Query 024781
Match_columns 262
No_of_seqs 132 out of 700
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:19:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024781.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024781hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_U RPN8, 26S proteasome re 100.0 1.4E-49 4.9E-54 368.8 24.2 203 58-261 4-216 (338)
2 2o95_A 26S proteasome non-ATPa 100.0 1.1E-41 3.8E-46 291.2 20.1 173 56-229 4-182 (187)
3 4e0q_A COP9 signalosome comple 100.0 2.8E-41 9.7E-46 277.3 9.3 133 57-190 3-139 (141)
4 4b4t_V 26S proteasome regulato 100.0 3.1E-32 1.1E-36 249.3 15.7 204 56-261 21-257 (306)
5 2znr_A AMSH-like protease; met 99.5 2.1E-13 7.3E-18 115.4 11.0 128 57-194 6-138 (178)
6 3rzv_A STAM-binding protein; u 99.4 4.9E-12 1.7E-16 109.6 11.9 127 58-195 40-172 (211)
7 2kks_A Uncharacterized protein 99.1 6.3E-09 2.1E-13 84.8 15.5 133 62-212 2-137 (146)
8 2kcq_A MOV34/MPN/PAD-1 family; 98.9 9.4E-09 3.2E-13 84.4 9.4 134 63-213 2-142 (153)
9 1oi0_A AF2198, hypothetical pr 98.1 1.8E-05 6.2E-10 62.4 9.7 106 62-189 4-111 (124)
10 2p8r_A PRP8, PRE-mRNA-splicing 96.5 0.0072 2.5E-07 53.8 7.8 110 71-194 46-172 (273)
11 2og4_A PRE-mRNA-splicing facto 96.2 0.008 2.7E-07 53.0 6.4 112 71-194 45-169 (254)
12 3sbg_A PRE-mRNA-splicing facto 94.7 0.04 1.4E-06 52.9 5.8 102 84-194 369-480 (565)
13 2rh2_A Dihydrofolate reductase 75.0 1.1 3.7E-05 29.7 1.3 12 137-148 23-34 (62)
14 2akf_A Coronin-1A; coiled coil 36.3 30 0.001 20.1 2.5 25 234-258 7-31 (32)
No 1
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-49 Score=368.85 Aligned_cols=203 Identities=25% Similarity=0.432 Sum_probs=181.5
Q ss_pred CCcEEEEehhhHhHHHHHHhhcC-CCCceEEEEeeeeEecCCeEEEEeeeecccCCCCc---ceeecHHHHHHHHHHHhh
Q 024781 58 SNVTAKVHPLVIFNICDCYVRRP-DQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD---QVALDIEYHHTMLKSHLK 133 (262)
Q Consensus 58 ~~~~V~VhPlVll~I~dH~~R~~-~~~~~ViG~LLG~~~~~~~veVtnsF~vP~~~~~~---~~~iD~~y~~~m~~l~kk 133 (262)
...+|.|||||||+|+|||+|.+ .++.+|+|+|||. ++|+.|||+|||++|++++++ .+++|.+|+++|+++|++
T Consensus 4 ~~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~-~~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kk 82 (338)
T 4b4t_U 4 QHEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGD-ANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKK 82 (338)
T ss_dssp CCSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEE-ECSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHH
T ss_pred CCCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeE-EcCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhh
Confidence 45699999999999999999954 4568999999998 899999999999999987653 368999999999999999
Q ss_pred hCCCCcEEEeecCCCCCCCchhHHHHHHhhhCC-CcEEEEEeCCCCCCcceeEEEEeeeeccCC-cccccceEEeeeEEe
Q 024781 134 VNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP-NPVHLTVDTGFRNGEGTVKAYVSVNLSLGD-RQLAAQFQEIPLDLR 211 (262)
Q Consensus 134 V~p~e~vVGWY~t~~~~~~~~~~ih~~~~~~~~-~PI~L~vD~~~~~~~l~ikAy~~~~~~~~~-~~~~~~F~~ip~~I~ 211 (262)
|||++.+||||+||++++..|+.||++|+++++ +|++|++|+...++++|++||++.+.+..+ ......|+++|++|.
T Consensus 83 V~~~e~iVGWY~tg~~~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~~~~lpi~aY~s~~~~~~~~~~~~~~F~~lp~~i~ 162 (338)
T 4b4t_U 83 INAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQGVGLPTDAYVAIEQVKDDGTSTEKTFLHLPCTIE 162 (338)
T ss_dssp HCCSCEEEEEEECCSSCCSTHHHHHHHHGGGCCSCCCEEEECSCCCSSSCSEEEEEEEEECSSCSTTCEEEEEEECEEEC
T ss_pred cCccCCEEEEEecCCCCCccHHHHHHHHHhccCCCcEEEEecCCCCCCCcceEEEEeehhccCCCcccccEEEEeeeEee
Confidence 999999999999999999999999999999974 899999999998999999999998876653 345678999999999
Q ss_pred cchhhHHHHHHhhccCCC----CCcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024781 212 MIEAERVGFDILKSTSVD----KLPSDLEGMEVLMERLLTLINDIYKYVDDTVR 261 (262)
Q Consensus 212 ~~e~E~i~l~~l~k~~~~----~~~~~l~~l~~sl~~L~~~l~~i~~Yl~~V~~ 261 (262)
++|+||||++|+++...+ .+..++.++.+++++|+.+++.|++||++|.+
T Consensus 163 ~~eaE~Igv~~l~r~~~~~~~~~l~~~l~~~~~al~~L~~~l~~i~~Yl~~V~~ 216 (338)
T 4b4t_U 163 AEEAEEIGVEHLLRDVRDQAAGGLSIRLTNQLKSLKGLQSKLKDVVEYLDKVIN 216 (338)
T ss_dssp SCHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cCcHHHHHHHHHHhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999986433 36678999999999999999999999999874
No 2
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=100.00 E-value=1.1e-41 Score=291.22 Aligned_cols=173 Identities=31% Similarity=0.466 Sum_probs=153.2
Q ss_pred CCCCcEEEEehhhHhHHHHHHhhcC--CCCceEEEEeeeeEecCCeEEEEeeeecccCCCCc---ceeecHHHHHHHHHH
Q 024781 56 ATSNVTAKVHPLVIFNICDCYVRRP--DQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD---QVALDIEYHHTMLKS 130 (262)
Q Consensus 56 ~~~~~~V~VhPlVll~I~dH~~R~~--~~~~~ViG~LLG~~~~~~~veVtnsF~vP~~~~~~---~~~iD~~y~~~m~~l 130 (262)
+.+..+|+|||+|+++|+|||+|.. ..+.+|+|+|||. ..++.++|+|||++|+.++++ .+.+|.+|+++|+++
T Consensus 4 ~~~~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~-~~~~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~ 82 (187)
T 2o95_A 4 ELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGS-WQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGM 82 (187)
T ss_dssp CCSCSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEE-ESSSEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHH
T ss_pred CCCCCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEE-EcCCEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHH
Confidence 4567899999999999999999974 2578999999998 778999999999999987654 358999999999999
Q ss_pred HhhhCCCCcEEEeecCCCCCCCchhHHHHHHhhhCCCcEEEEEeCCCCCCcceeEEEEeeeeccCC-cccccceEEeeeE
Q 024781 131 HLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGD-RQLAAQFQEIPLD 209 (262)
Q Consensus 131 ~kkV~p~e~vVGWY~t~~~~~~~~~~ih~~~~~~~~~PI~L~vD~~~~~~~l~ikAy~~~~~~~~~-~~~~~~F~~ip~~ 209 (262)
+++++|++.+||||+++++.+..|..||++|++.+++|++|++||.+..++++++||++.+.+.++ .+....|+++|++
T Consensus 83 ~~~v~~~~~iVGWY~s~~~~s~~d~~i~~~~~~~~~~~v~Livd~~~~~~~l~i~ay~~~~~~~~~~~~~~~~F~~ip~~ 162 (187)
T 2o95_A 83 FKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSE 162 (187)
T ss_dssp HHTTSSSCEEEEEEECCSSCCTTHHHHHHHHTTTCTTCEEEEECCCTTC-CCSEEEEEEEEECC----CCEEEEEEEEEE
T ss_pred HHHhCCCCCEEEEEcCCCcCCcccHHHHHHHHhcCCCCEEEEECCCCCCCCcCeEEEEEechhcCCCCcccCEEEEeeEE
Confidence 999999999999999999999999999999999899999999999886556999999999887653 3457889999999
Q ss_pred EecchhhHHHHHHhhccCCC
Q 024781 210 LRMIEAERVGFDILKSTSVD 229 (262)
Q Consensus 210 I~~~e~E~i~l~~l~k~~~~ 229 (262)
|.++|+||||++|+++...+
T Consensus 163 I~~~eaE~i~v~~l~~~~~~ 182 (187)
T 2o95_A 163 IGAEEAEEVGVEHLLRDIKD 182 (187)
T ss_dssp ECCCHHHHHHHHHHHHHCCS
T ss_pred EecCcHHHHHHHHHHhcCCC
Confidence 99999999999999987643
No 3
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=100.00 E-value=2.8e-41 Score=277.32 Aligned_cols=133 Identities=23% Similarity=0.381 Sum_probs=114.4
Q ss_pred CCCcEEEEehhhHhHHHHHHhhcCC---CCceEEEEeeeeEecCCeEEEEeeeecccCCCCcceeecHHHHHHHHHHHhh
Q 024781 57 TSNVTAKVHPLVIFNICDCYVRRPD---QAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLK 133 (262)
Q Consensus 57 ~~~~~V~VhPlVll~I~dH~~R~~~---~~~~ViG~LLG~~~~~~~veVtnsF~vP~~~~~~~~~iD~~y~~~m~~l~kk 133 (262)
+++.+|+|||||||+|+|||+|.+. .+.+|+|+|||. +.|+++||+|||++|++++++++.+|.+|+++|++++|+
T Consensus 3 ~~~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~-~~~~~veV~nsF~~p~~~~~~~~~~d~~y~~~m~~~~k~ 81 (141)
T 4e0q_A 3 HMSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGK-QKGRNIEIMNSFELKTDVIGDETVINKDYYNKKEQQYKQ 81 (141)
T ss_dssp --CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEE-EETTEEEEEEEEECCEEEETTEEEECHHHHHHHHHHHHH
T ss_pred CCcEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEE-EeCCEEEEEEEEEecccCCCCceeecHHHHHHHHHHHHH
Confidence 5578999999999999999999742 368999999999 789999999999999998888899999999999999999
Q ss_pred hCCCCcEEEeecCCCCCCCchhHHHHHHhhhCCCcEEEEEeCCCC-CCcceeEEEEee
Q 024781 134 VNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFR-NGEGTVKAYVSV 190 (262)
Q Consensus 134 V~p~e~vVGWY~t~~~~~~~~~~ih~~~~~~~~~PI~L~vD~~~~-~~~l~ikAy~~~ 190 (262)
|||++.+||||+|+++++..|+.||++|++++++||+|++||.++ .|++|++||++.
T Consensus 82 v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~~g~Lp~~ay~sv 139 (141)
T 4e0q_A 82 VFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPLSRSVDHLPLKLFESL 139 (141)
T ss_dssp HSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEESCSCCCCTTHHHHHHCC-
T ss_pred hCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEECCCccCCCeEEEEEEEEE
Confidence 999999999999999999999999999999999999999999985 467999999875
No 4
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.1e-32 Score=249.33 Aligned_cols=204 Identities=15% Similarity=0.220 Sum_probs=163.9
Q ss_pred CCCCcEEEEehhhHhHHHHHHhhcCCCCceEEEEeeeeEecCCeEEEEeeeecccCCCCcce-eecHHHHHHHHHHHhhh
Q 024781 56 ATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQV-ALDIEYHHTMLKSHLKV 134 (262)
Q Consensus 56 ~~~~~~V~VhPlVll~I~dH~~R~~~~~~~ViG~LLG~~~~~~~veVtnsF~vP~~~~~~~~-~iD~~y~~~m~~l~kkV 134 (262)
..+..+|+|+|+|||+|++|+.+ ..+.+|+|.|||.+.++++++|+|||++|+.++++++ ++|.+|+.+|+++++++
T Consensus 21 ~~~~~~V~is~lallkm~~Ha~~--~~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~~m~~~~~~v 98 (306)
T 4b4t_V 21 DDTKETVYISSIALLKMLKHGRA--GVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQT 98 (306)
T ss_dssp CSSCCEEEECHHHHHHHHHHTCS--CSSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeHHHHHHHHHHhcC--CCCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCCHHHHHHHHHHHHHh
Confidence 35678999999999999999954 3578999999998566778999999999999888776 58999999999999999
Q ss_pred CCCCcEEEeecCCCCC----CCchhHHHHHHhhhCCCcEEEEEeCCC-CCCcceeEEEEeeeeccC------C-------
Q 024781 135 NPQEVIVGWFSTGLGV----TGGSALIHEFYCREVPNPVHLTVDTGF-RNGEGTVKAYVSVNLSLG------D------- 196 (262)
Q Consensus 135 ~p~e~vVGWY~t~~~~----~~~~~~ih~~~~~~~~~PI~L~vD~~~-~~~~l~ikAy~~~~~~~~------~------- 196 (262)
++++.+||||||+++. +..|+..|..|+...+.+|+|++||.. ..|+++++||++.+.+.. .
T Consensus 99 ~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~~G~~~i~Afr~~~~~~~~~~~~~~~~~s~~~ 178 (306)
T 4b4t_V 99 GRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNLEPRQTTSNTG 178 (306)
T ss_dssp SCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSSSCSSCEEEEECCHHHHHHCCCCCSCC-----
T ss_pred CCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCCCCceeeeEEEecCccccccccCccccccccc
Confidence 9999999999999863 455666666677778889999999987 478999999999875421 0
Q ss_pred -----------cccccceEEeeeEEecchhhHHHHHHhhccCCC---CCcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024781 197 -----------RQLAAQFQEIPLDLRMIEAERVGFDILKSTSVD---KLPSDLEGMEVLMERLLTLINDIYKYVDDTVR 261 (262)
Q Consensus 197 -----------~~~~~~F~~ip~~I~~~e~E~i~l~~l~k~~~~---~~~~~l~~l~~sl~~L~~~l~~i~~Yl~~V~~ 261 (262)
......|.++|+++..++.|+..++.+.+..-. ...+-.+..+.+.+++.++++.+.+|.+.|++
T Consensus 179 ~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~l~~~~~~~~~~~~~~~i~~m~~~~~~y~k~v~~ 257 (306)
T 4b4t_V 179 LLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAATKSMVKIAEQYSKRIEE 257 (306)
T ss_dssp -----------------CEEECSCCCCCSSCTHHHHHHHHC----------CHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred ccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 012346999999999999999999999874321 23344567778889999999999999998864
No 5
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.47 E-value=2.1e-13 Score=115.44 Aligned_cols=128 Identities=12% Similarity=0.130 Sum_probs=97.2
Q ss_pred CCCcEEEEehhhHhHHHHHHhhcCCCCceEEEEeeeeEecCCeEEEEeeeecccCCCCccee-ecHHHHHHHHHHHhhhC
Q 024781 57 TSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA-LDIEYHHTMLKSHLKVN 135 (262)
Q Consensus 57 ~~~~~V~VhPlVll~I~dH~~R~~~~~~~ViG~LLG~~~~~~~veVtnsF~vP~~~~~~~~~-iD~~y~~~m~~l~kkV~ 135 (262)
.+...|.|...++.+|+.|+.++..++..++|.|+|. ..++..+|+++|++|...+++.+. .+.+-+ ++. ...
T Consensus 6 ~~~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~-~~~~~~~V~~v~~~pq~~t~~~~~~~~~~e~---~~~--~~~ 79 (178)
T 2znr_A 6 EGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGK-LTHNEFTITHVIVPKQSAGPDYCDMENVEEL---FNV--QDQ 79 (178)
T ss_dssp CSCCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEE-EETTEEEEEEEEECCEEEETTEEEECCHHHH---HHH--HHH
T ss_pred CCcEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeE-ecCCCeEEEEEEeCCcCCCCCeeccCCHHHH---HHH--HHh
Confidence 3456899999999999999987644457899999998 677889999999999877666554 332211 111 234
Q ss_pred CCCcEEEeecCCCC----CCCchhHHHHHHhhhCCCcEEEEEeCCCCCCcceeEEEEeeeecc
Q 024781 136 PQEVIVGWFSTGLG----VTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSL 194 (262)
Q Consensus 136 p~e~vVGWY~t~~~----~~~~~~~ih~~~~~~~~~PI~L~vD~~~~~~~l~ikAy~~~~~~~ 194 (262)
.++.+||||||+++ ++..|+..|..|+...+..++|+++|... .++||+..+.++
T Consensus 80 ~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~----~~~afrl~~~g~ 138 (178)
T 2znr_A 80 HDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK----DTGIFRLTNAGM 138 (178)
T ss_dssp HTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT----EEEEEEECHHHH
T ss_pred CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC----cceEEEEECCcE
Confidence 68999999999964 56677777766766667779999999763 389999987654
No 6
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.36 E-value=4.9e-12 Score=109.64 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=96.1
Q ss_pred CCcEEEEehhhHhHHHHHHhhcCCCCceEEEEeeeeEecCCeEEEEeeeecccCCCCcceee-cH-HHHHHHHHHHhhhC
Q 024781 58 SNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVAL-DI-EYHHTMLKSHLKVN 135 (262)
Q Consensus 58 ~~~~V~VhPlVll~I~dH~~R~~~~~~~ViG~LLG~~~~~~~veVtnsF~vP~~~~~~~~~i-D~-~y~~~m~~l~kkV~ 135 (262)
.-.+|.|..-++-+|+.|...+-.++.+++|.|+|+ ..++.++|+++|..|...+++.+.. +. +.++-+.+
T Consensus 40 ~lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk-~~~~~~~I~~v~~ppq~gt~~~v~~~~~~e~~~~~~~------ 112 (211)
T 3rzv_A 40 GLRHVVVPGRLCPQFLQLASANTARGVATCGILCGK-LMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQ------ 112 (211)
T ss_dssp TBCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEE-EETTEEEEEEEEECCEEECSSCEEECCHHHHHHHHHH------
T ss_pred ccEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeE-cCCCCEEEEEEEeCCccCCCCceeccChHHHHHHHhh------
Confidence 346899999999999999977533457899999998 7788999999999998776665533 22 22221111
Q ss_pred CCCcEEEeecCCCC----CCCchhHHHHHHhhhCCCcEEEEEeCCCCCCcceeEEEEeeeeccC
Q 024781 136 PQEVIVGWFSTGLG----VTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLG 195 (262)
Q Consensus 136 p~e~vVGWY~t~~~----~~~~~~~ih~~~~~~~~~PI~L~vD~~~~~~~l~ikAy~~~~~~~~ 195 (262)
.++.+||||||++. ++..|+..|..|+...+.-|+|++||.. .+++||+..+.|++
T Consensus 113 ~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~----~~lgaFrLtp~G~~ 172 (211)
T 3rzv_A 113 QGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKF----QETGFFKLTDHGLE 172 (211)
T ss_dssp HTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTT----TEEEEEEECHHHHH
T ss_pred CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC----CeeeEEEeccchhh
Confidence 49999999999864 5667777776676666777999999863 37999999987753
No 7
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=99.06 E-value=6.3e-09 Score=84.80 Aligned_cols=133 Identities=13% Similarity=0.068 Sum_probs=93.5
Q ss_pred EEEehhhHhHHHHHHhhcCCCCceEEEEeeeeEecCCeEEEEeeeecccCCCC-cceeecHHHHHHHHHHHhhhCCCCcE
Q 024781 62 AKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFS-DQVALDIEYHHTMLKSHLKVNPQEVI 140 (262)
Q Consensus 62 V~VhPlVll~I~dH~~R~~~~~~~ViG~LLG~~~~~~~veVtnsF~vP~~~~~-~~~~iD~~y~~~m~~l~kkV~p~e~v 140 (262)
+.|...++.+|++|..+. .+.+++|.|+|. ..++...|+..|++|....+ +...+|.+.+.+..+...+ .++.+
T Consensus 2 l~i~~~~l~~i~~ha~~~--~p~E~cGlL~G~-~~~~~~~v~~~~p~~n~~~~~~~f~~dp~~~~~~~~~~~~--~g~~i 76 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQA--LPNEACGLLGGR-RDGDDRWVERVYPLNNLDQSPEHFSMDPREQLTAVKDMRK--NGWVM 76 (146)
T ss_dssp EEEEHHHHHHHHHHHHHH--TTSCEEEEEEEE-EETTEEEEEEEECCCCCSCCSSSCCCCHHHHHHHHHHHHH--HTCEE
T ss_pred EEECHHHHHHHHHHHHhc--CCcceEEEEEEE-EcCCCcEEEEEEECCCcCCCCceEEECHHHHHHHHHHHHH--CCCEE
Confidence 578889999999999775 468999999998 67778899999999955433 3456787666555544443 36899
Q ss_pred EEeecCCCCC--CCchhHHHHHHhhhCCCcEEEEEeCCCCCCcceeEEEEeeeeccCCcccccceEEeeeEEec
Q 024781 141 VGWFSTGLGV--TGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRM 212 (262)
Q Consensus 141 VGWY~t~~~~--~~~~~~ih~~~~~~~~~PI~L~vD~~~~~~~l~ikAy~~~~~~~~~~~~~~~F~~ip~~I~~ 212 (262)
||||||+++. ..+...++. +. .+..+++++.+.. ++...++||+.. +..|.++|+.+..
T Consensus 77 vG~~HSHP~~~~~PS~~D~~~--~~-~~~~~~lIvs~~~-~~~~~~~af~~~---------~~~~~e~~i~~~~ 137 (146)
T 2kks_A 77 LGNFHSHPATPARPSAEDKRL--AF-DPSLSYLIISLAE-PQKPVCKSFLIK---------KDGVDEEEIILKE 137 (146)
T ss_dssp EEEEEEESSSCSSCCHHHHTT--CC-SSSCEEEEEECSC-SSSCEEEEEEEC---------SSCEEEECEEEES
T ss_pred EEEEeCCCcCCCCCCHHHHHh--hh-cCCCeEEEEEccC-CCceEEEEEEEe---------CCeEEEEEEEEeh
Confidence 9999999863 333333332 11 1344788887643 245679999984 2358999988753
No 8
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=98.86 E-value=9.4e-09 Score=84.38 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=88.6
Q ss_pred EEehhhHhHHHHHHhhcCCCCceEEEEeeeeEec-CCeEEEEeeeecccC--CC-CcceeecHHHHHHHHHHHhhhCCCC
Q 024781 63 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLP-DGTVDIRNSYVVPHN--EF-SDQVALDIEYHHTMLKSHLKVNPQE 138 (262)
Q Consensus 63 ~VhPlVll~I~dH~~R~~~~~~~ViG~LLG~~~~-~~~veVtnsF~vP~~--~~-~~~~~iD~~y~~~m~~l~kkV~p~e 138 (262)
+|.+.++.+|+.|..+. .+.+++|.|+|. .. ++.+.|+..|++|.. .+ .....+|.+.+.+..+...+. ++
T Consensus 2 ~i~~~~l~~i~~ha~~~--~p~E~cGlL~G~-~~~~~~~~v~~~~p~~n~~~~~~~~~f~~dp~~~~~~~~~~~~~--g~ 76 (153)
T 2kcq_A 2 KTTPDILDQIRVHGADA--YPEEGCGFLLGT-VTDDGDNRVAALHRATNRRSEQRTRRYELTADDYRAADAAAQEQ--GL 76 (153)
T ss_dssp BCCHHHHHHHHHHHHHH--TTSCCCEEEEEE-ECTTSCEEEEEEEESSCCCCCCCSCCSSCCCCSHHHHHHHHHHH--TC
T ss_pred EeCHHHHHHHHHHHHhc--CCcceEEEEEEe-eccCCCeEEEEEEECCCCCCCCCCcEEEECHHHHHHHHHHHHHC--CC
Confidence 45678899999999875 468999999998 55 678899999999865 32 234456654444444444332 68
Q ss_pred cEEEeecCCCCC--CCchhHHHHHHhhhCCCcEEEEEeCCCCCCc-ceeEEEEeeeeccCCcccccceEEeeeEEecc
Q 024781 139 VIVGWFSTGLGV--TGGSALIHEFYCREVPNPVHLTVDTGFRNGE-GTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMI 213 (262)
Q Consensus 139 ~vVGWY~t~~~~--~~~~~~ih~~~~~~~~~PI~L~vD~~~~~~~-l~ikAy~~~~~~~~~~~~~~~F~~ip~~I~~~ 213 (262)
.+||||||+++. ..+...+.. + ..+..+++++.+. .++ ..+++|+.... ...|.+.++.|...
T Consensus 77 ~ivG~yHSHP~~~~~PS~~D~~~--~-~~~~~~~lIvs~~--~~~~~~~~af~~~~~-------~g~~~e~~i~v~~~ 142 (153)
T 2kcq_A 77 DVVGVYHSHPDHPARPSATDLEE--A-TFPGFTYVIVSVR--DGAPEALTAWALAPD-------RSEFHREDIVRPDP 142 (153)
T ss_dssp EEEEEEEECSSSSSSCCHHHHHT--C-CCTTSEEEEEEEE--TTEEEEEEEEEECTT-------CSCEEEECCBCCCS
T ss_pred eEEEEEeCCCCCCCCCCHHHHHh--h-hcCCCeEEEEECC--CCCccEEEEEEEeCC-------CCcEEEEEEEEecC
Confidence 999999999863 233333332 1 1234478888642 233 46899998411 23588888877543
No 9
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=98.10 E-value=1.8e-05 Score=62.35 Aligned_cols=106 Identities=16% Similarity=0.131 Sum_probs=66.1
Q ss_pred EEEehhhHhHHHHHHhhcCCCCceEEEEeeeeEecCCeEEEEeeeecccCCCCcceeecHHHHHHHHHHHhhhCCCCcEE
Q 024781 62 AKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIV 141 (262)
Q Consensus 62 V~VhPlVll~I~dH~~R~~~~~~~ViG~LLG~~~~~~~veVtnsF~vP~~~~~~~~~iD~~y~~~m~~l~kkV~p~e~vV 141 (262)
+.|...++.+|++|..+. .+.+++|.|+|. . + .|++.|++| ...+. .+..|...|.. .++.+|
T Consensus 4 v~i~~~~l~~i~~ha~~~--~P~E~cGlL~g~-~-~---~v~~~~~~p-~~~~~---~~~~f~~~~~~------~~~~iv 66 (124)
T 1oi0_A 4 MKISRGLLKTILEAAKSA--HPDEFIALLSGS-K-D---VMDELIFLP-FVSGS---VSAVIHLDMLP------IGMKVF 66 (124)
T ss_dssp CEECHHHHHHHHHHHHHH--TTSCCEEEEEES-T-T---EECEEEECC-CCC----------------------CCCEEE
T ss_pred EEEcHHHHHHHHHHHHhc--CCCeeEEEEecc-c-C---EEEEEEECC-CCCCC---cCceeeeeecc------CCCEEE
Confidence 678889999999999875 478999999997 4 2 688999999 44322 11122222222 579999
Q ss_pred EeecCCCCC--CCchhHHHHHHhhhCCCcEEEEEeCCCCCCcceeEEEEe
Q 024781 142 GWFSTGLGV--TGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVS 189 (262)
Q Consensus 142 GWY~t~~~~--~~~~~~ih~~~~~~~~~PI~L~vD~~~~~~~l~ikAy~~ 189 (262)
|||||+++- ..+...+.. +.. +..++|++.+.. +...+++|..
T Consensus 67 G~~HSHP~~~~~PS~~D~~~--~~~-~~~~~lIvs~~~--~~~~~~~f~~ 111 (124)
T 1oi0_A 67 GTVHSHPSPSCRPSEEDLSL--FTR-FGKYHIIVCYPY--DENSWKCYNR 111 (124)
T ss_dssp EEEEEESSSCCSCCHHHHHH--HHH-SCSEEEEEETTC--CTTCEEEEET
T ss_pred EEEEECcCCCCccCHHHHHh--hhc-CCCEEEEEEccC--CCceEEEEec
Confidence 999999853 233333332 222 345788876532 2356788876
No 10
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=96.47 E-value=0.0072 Score=53.76 Aligned_cols=110 Identities=21% Similarity=0.273 Sum_probs=74.7
Q ss_pred HHHHHHhhcCCCCceEEEEeeeeEec---CCeEEEEeeeecccCCCCcceeec-----HHHHHHHHHHHhhhCCCCcEEE
Q 024781 71 NICDCYVRRPDQAERVIGTLLGSVLP---DGTVDIRNSYVVPHNEFSDQVALD-----IEYHHTMLKSHLKVNPQEVIVG 142 (262)
Q Consensus 71 ~I~dH~~R~~~~~~~ViG~LLG~~~~---~~~veVtnsF~vP~~~~~~~~~iD-----~~y~~~m~~l~kkV~p~e~vVG 142 (262)
+|++.+.....-...+.|.|.|. .. .+..||+.---+|...+.+.+..- .+|+ -++..+|
T Consensus 46 nllkkFi~IADlrTq~~G~LyG~-s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~l-----------~dLe~LG 113 (273)
T 2p8r_A 46 NILKKFITISDLRTQIAGFMYGV-SPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELL-----------RDFEPLG 113 (273)
T ss_dssp HHHHHHHHTSCSSSCCEEEEEEE-CCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCTTT-----------TTSEEEE
T ss_pred HHHHHHHHHhhccceEEEEEecc-CCCCCCCeEEEEEEEECCccCCCceEECCCcCcchhhh-----------ccccccc
Confidence 55556655543346799999998 53 246788766666666655444221 2232 7999999
Q ss_pred eecCCCC----CCCchhHHHHHHhhh---C--CCcEEEEEeCCCCCCcceeEEEEeeeecc
Q 024781 143 WFSTGLG----VTGGSALIHEFYCRE---V--PNPVHLTVDTGFRNGEGTVKAYVSVNLSL 194 (262)
Q Consensus 143 WY~t~~~----~~~~~~~ih~~~~~~---~--~~PI~L~vD~~~~~~~l~ikAy~~~~~~~ 194 (262)
|=||.+. +++.|+..|..|... . ++.|++++-+ ..|..++.||++.+.|+
T Consensus 114 WIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsf--tpgs~sl~af~LT~~G~ 172 (273)
T 2p8r_A 114 WMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSF--TPGSVSLTAYKLTPSGY 172 (273)
T ss_dssp EEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEE--ETTEEEEEEEEECHHHH
T ss_pred eEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEec--CCCCceeEEEEcChHHh
Confidence 9999763 577888888777654 3 3678888743 45667899999988765
No 11
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.008 Score=52.96 Aligned_cols=112 Identities=13% Similarity=0.236 Sum_probs=73.9
Q ss_pred HHHHHHhhcCCCCceEEEEeeeeEecC---CeEEEEeeeecccCCCCcceeec-----HHHHHHHHHHHhhhCCCCcEEE
Q 024781 71 NICDCYVRRPDQAERVIGTLLGSVLPD---GTVDIRNSYVVPHNEFSDQVALD-----IEYHHTMLKSHLKVNPQEVIVG 142 (262)
Q Consensus 71 ~I~dH~~R~~~~~~~ViG~LLG~~~~~---~~veVtnsF~vP~~~~~~~~~iD-----~~y~~~m~~l~kkV~p~e~vVG 142 (262)
+|++-+.+...-...+.|.|.|. ... +..||+.---+|...+.+.+... .+|.+ --++..+|
T Consensus 45 nLlkkFi~IAD~~Tq~cG~LyG~-~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~---------l~dLe~LG 114 (254)
T 2og4_A 45 NLLKKFIEISDVKIQVAAFIYGM-SAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPD---------TEGLELLG 114 (254)
T ss_dssp HHHHHHHHTSCSSSCCEEEEEEE-ECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTTSTT---------CTTCEEEE
T ss_pred HHHHHHHHHhhccceEEEEEEcc-CCCCCCCeEEEEEEEECCccCCCceEECCCcCccccchh---------hcCCEecc
Confidence 44555544443345799999998 532 46788665555666554433211 12211 26899999
Q ss_pred eecCCCC----CCCchhHHHHHHhhh-CCCcEEEEEeCCCCCCcceeEEEEeeeecc
Q 024781 143 WFSTGLG----VTGGSALIHEFYCRE-VPNPVHLTVDTGFRNGEGTVKAYVSVNLSL 194 (262)
Q Consensus 143 WY~t~~~----~~~~~~~ih~~~~~~-~~~PI~L~vD~~~~~~~l~ikAy~~~~~~~ 194 (262)
|=||.+. +++.|+..|..|... .++.|++++-+ ..|..++.||++.+.|+
T Consensus 115 WIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsf--tpgs~sl~af~LT~~G~ 169 (254)
T 2og4_A 115 WIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFS--TPGSVSLSAYNLTDEGY 169 (254)
T ss_dssp EEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEE--ETTEEEEEEEEECHHHH
T ss_pred eEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEec--CCCCceeEEEEcChhhh
Confidence 9999763 567888888777663 46889988754 34567899999998775
No 12
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=94.67 E-value=0.04 Score=52.86 Aligned_cols=102 Identities=14% Similarity=0.208 Sum_probs=69.2
Q ss_pred ceEEEEeeeeEec-C--CeEEEEeeeecccCCCCcceeecHHHHHHHHHHHhh--hCCCCcEEEeecCCCC----CCCch
Q 024781 84 ERVIGTLLGSVLP-D--GTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLK--VNPQEVIVGWFSTGLG----VTGGS 154 (262)
Q Consensus 84 ~~ViG~LLG~~~~-~--~~veVtnsF~vP~~~~~~~~~iD~~y~~~m~~l~kk--V~p~e~vVGWY~t~~~----~~~~~ 154 (262)
..+.|.|.|. .. + +..||+.---+|..++.+.+.+. + +..+.. .-.+...+||=||.+. +++.|
T Consensus 369 TQicGyLyG~-sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp-~-----lp~he~~~~l~dLe~LGWIHTqp~et~fLSs~D 441 (565)
T 3sbg_A 369 IQVAAFIYGM-SAKDHPKVKEIKTVVLVPQLGHVGSVQIS-N-----IPDIGDLPDTEGLELLGWIHTQTEELKFMAASE 441 (565)
T ss_dssp SCCEEEEEEE-EETTEEEEEEEEEEECCCEEECSSCEEEC-C-----CCCCTTSTTCTTCEEEEEEEEESSCCSSCCHHH
T ss_pred ceeEEEEecC-CCCCCCCeEEEEEEEECCccCCCceEECC-C-----CCccccccccccCEecceeeecCCcccccCHHH
Confidence 5799999998 55 3 45788665555676665555432 0 000000 1267999999998753 67888
Q ss_pred hHHHHHHhhhCC-CcEEEEEeCCCCCCcceeEEEEeeeecc
Q 024781 155 ALIHEFYCREVP-NPVHLTVDTGFRNGEGTVKAYVSVNLSL 194 (262)
Q Consensus 155 ~~ih~~~~~~~~-~PI~L~vD~~~~~~~l~ikAy~~~~~~~ 194 (262)
+..|..+...++ +.|.+++ +...|..++.||...+.|.
T Consensus 442 l~THakl~~~n~~~~I~itv--sftPGS~SLsAy~LT~eGy 480 (565)
T 3sbg_A 442 VATHSKLFADKKRDCIDISI--FSTPGSVSLSAYNLTDEGY 480 (565)
T ss_dssp HHHHHHHHSSSCTTCEEEEE--EEETTEEEEEEEEECHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEE--EecCCceEEEEEecCHhHH
Confidence 888988876643 4466655 3456889999999999874
No 13
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=75.01 E-value=1.1 Score=29.69 Aligned_cols=12 Identities=58% Similarity=1.129 Sum_probs=9.5
Q ss_pred CCcEEEeecCCC
Q 024781 137 QEVIVGWFSTGL 148 (262)
Q Consensus 137 ~e~vVGWY~t~~ 148 (262)
+-.|||||+|.-
T Consensus 23 qg~ivgwyct~l 34 (62)
T 2rh2_A 23 QGQIVGWYCTNL 34 (62)
T ss_dssp EEEEEEEECCSS
T ss_pred cceEeEEEEccc
Confidence 457999999863
No 14
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=36.32 E-value=30 Score=20.07 Aligned_cols=25 Identities=12% Similarity=0.376 Sum_probs=17.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 024781 234 DLEGMEVLMERLLTLINDIYKYVDD 258 (262)
Q Consensus 234 ~l~~l~~sl~~L~~~l~~i~~Yl~~ 258 (262)
++..+..-+.+|+++++++-+-+++
T Consensus 7 ~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 7 DVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556667778888888887766553
Done!