Query 024782
Match_columns 262
No_of_seqs 20 out of 22
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 14:20:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3quf_A Extracellular solute-bi 67.6 1.1 3.8E-05 37.5 0.0 20 19-44 2-21 (414)
2 2xz9_A Phosphoenolpyruvate-pro 67.0 7.1 0.00024 34.8 5.1 66 85-151 145-213 (324)
3 2lqo_A Putative glutaredoxin R 63.9 12 0.0004 27.4 4.9 55 92-153 16-83 (92)
4 3arc_J Photosystem II reaction 57.8 3.7 0.00013 28.2 1.2 28 234-261 6-33 (40)
5 3d8h_A Glycolytic phosphoglyce 57.8 3.3 0.00011 34.3 1.2 46 19-64 2-48 (267)
6 3fjv_A Uncharacterized novel p 54.5 6.9 0.00024 33.8 2.6 27 111-137 84-114 (194)
7 3rku_A Oxidoreductase YMR226C; 52.0 3 0.0001 34.8 0.0 13 19-31 2-14 (287)
8 2hwg_A Phosphoenolpyruvate-pro 51.7 20 0.00067 34.7 5.5 64 85-150 394-461 (575)
9 2l1p_A DNA-binding protein SAT 51.5 3.5 0.00012 31.8 0.3 24 85-109 59-82 (83)
10 2qu8_A Putative nucleolar GTP- 51.5 4.3 0.00015 31.7 0.8 39 19-62 2-41 (228)
11 2wqd_A Phosphoenolpyruvate-pro 50.4 20 0.00068 34.6 5.4 44 85-128 396-440 (572)
12 2acm_A Mucin-1; auto-catalytic 49.7 3.5 0.00012 30.8 0.0 14 20-33 2-15 (66)
13 3kz3_A Repressor protein CI; f 49.0 13 0.00043 25.0 2.8 63 85-171 2-64 (80)
14 1z6g_A Guanylate kinase; struc 48.6 3.7 0.00013 32.9 0.0 18 19-36 2-19 (218)
15 2b6h_A ADP-ribosylation factor 46.0 7.3 0.00025 29.6 1.3 12 51-62 30-41 (192)
16 1kkx_A Transcription regulator 45.4 7.8 0.00027 30.4 1.4 46 19-64 4-51 (123)
17 3cz5_A Two-component response 45.0 74 0.0025 22.4 6.4 63 112-174 78-144 (153)
18 3eul_A Possible nitrate/nitrit 42.6 78 0.0027 22.2 6.3 60 112-171 88-151 (152)
19 2qry_A Thiamine-binding peripl 42.2 5.3 0.00018 32.7 0.0 11 19-29 2-12 (330)
20 1rwy_A Parvalbumin alpha; EF-h 41.7 7.6 0.00026 26.4 0.7 40 132-171 50-89 (109)
21 2fgx_A Putative thioredoxin; N 40.4 19 0.00064 27.2 2.8 40 90-135 40-79 (107)
22 2yfa_A MCPS, methyl-accepting 40.1 6 0.0002 31.6 0.0 27 82-108 70-96 (258)
23 2q58_A Fragment, farnesyl pyro 39.4 6.3 0.00021 35.5 0.0 11 19-29 2-12 (368)
24 1lmb_3 Protein (lambda repress 38.3 23 0.00079 23.9 2.8 64 84-171 6-69 (92)
25 4dcu_A GTP-binding protein ENG 37.9 9.6 0.00033 34.0 1.0 11 19-29 2-12 (456)
26 1pva_A Parvalbumin; calcium bi 37.3 7.5 0.00026 26.5 0.1 67 105-171 21-90 (110)
27 2ew1_A RAS-related protein RAB 36.3 7.5 0.00026 30.2 0.0 11 19-29 2-12 (201)
28 2pvu_A ARTJ; basic amino acid 36.1 7.5 0.00026 30.3 0.0 11 19-29 2-12 (272)
29 2cob_A LCOR protein; MLR2, KIA 33.5 28 0.00097 25.9 2.7 23 139-161 13-35 (70)
30 3un6_A Hypothetical protein sa 32.1 9.6 0.00033 31.6 0.0 15 19-33 2-16 (341)
31 2pvb_A Protein (parvalbumin); 31.7 9.3 0.00032 26.0 -0.1 41 131-171 49-89 (108)
32 3o39_A Periplasmic protein rel 30.9 11 0.00036 29.4 0.1 15 19-33 2-16 (108)
33 2k8s_A Thioredoxin; dimer, str 30.3 22 0.00074 23.6 1.5 28 91-118 13-40 (80)
34 1xgw_A Epsin 4; ENTH, enthopro 30.2 23 0.0008 29.7 2.0 60 19-95 1-60 (176)
35 3nmz_A APC variant protein; pr 29.4 11 0.00039 34.6 0.0 18 19-36 2-19 (458)
36 3q6b_A Outer membrane protein 29.4 58 0.002 25.8 4.1 29 88-116 65-93 (189)
37 2v84_A Spermidine/putrescine A 29.1 12 0.0004 30.9 0.0 9 21-29 4-12 (343)
38 2o8v_B Thioredoxin 1; disulfid 29.1 12 0.0004 27.1 0.0 17 90-106 52-68 (128)
39 4f27_A Clumping factor B; DEV- 28.4 12 0.00042 31.9 0.0 17 19-35 3-19 (363)
40 1q5l_A Chaperone protein DNAK; 28.2 12 0.00042 29.0 0.0 13 19-31 2-14 (135)
41 2fg5_A RAB-22B, RAS-related pr 28.0 12 0.00043 27.9 0.0 11 19-29 2-12 (192)
42 2wbn_A G2P, terminase large su 27.8 13 0.00043 30.7 0.0 13 19-31 2-14 (212)
43 2p5s_A RAS and EF-hand domain 27.7 16 0.00055 27.5 0.6 11 51-61 29-39 (199)
44 3kx0_X Uncharacterized protein 27.5 13 0.00044 27.4 0.0 15 19-33 2-16 (185)
45 2h2k_A Protein S100-A13; calci 27.2 15 0.00052 27.1 0.3 13 23-35 2-14 (106)
46 2p32_A Heat shock 70 kDa prote 26.8 14 0.00047 27.9 0.1 12 19-30 2-13 (120)
47 3gzg_A Molybdate-binding perip 26.8 14 0.00046 30.6 0.0 11 19-29 2-12 (253)
48 4hw8_A Bacterial extracellular 26.7 14 0.00046 31.2 0.0 10 20-29 3-12 (420)
49 2qt1_A Nicotinamide riboside k 26.0 14 0.00049 28.4 0.0 12 19-30 2-13 (207)
50 3ixr_A Bacterioferritin comigr 25.8 14 0.00049 28.2 0.0 11 19-29 2-12 (179)
51 3k5i_A Phosphoribosyl-aminoimi 25.8 14 0.00049 32.4 0.0 12 18-29 1-12 (403)
52 3s9f_A Tryparedoxin; thioredox 25.8 14 0.0005 27.7 0.0 16 91-106 61-76 (165)
53 3h4x_A Phosphatidylinositol-sp 25.7 66 0.0023 30.0 4.4 78 97-183 105-188 (339)
54 1bu3_A Calcium-binding protein 25.7 20 0.00069 24.3 0.7 41 131-171 50-90 (109)
55 1s4x_A Integrin beta-3; cell a 25.3 15 0.00051 27.0 0.0 11 20-30 2-12 (67)
56 2auw_A Hypothetical protein NE 25.2 1.3E+02 0.0046 24.9 5.8 82 85-194 74-162 (170)
57 2i7a_A Calpain 13; calcium-dep 25.2 16 0.00053 28.4 0.1 40 130-171 83-124 (174)
58 2vh2_A FTSQ, cell division pro 25.1 15 0.00052 30.7 0.0 11 19-29 2-12 (255)
59 4hnl_A Mandelate racemase/muco 25.0 15 0.00052 32.8 0.0 8 22-29 2-9 (421)
60 1p5q_A FKBP52, FK506-binding p 25.0 15 0.00052 30.5 0.0 15 19-33 2-16 (336)
61 3b8m_A Ferric enterobactin (en 24.9 15 0.00052 32.0 0.0 14 114-127 121-134 (280)
62 2vws_A YFAU, 2-keto-3-deoxy su 24.9 44 0.0015 28.3 2.9 37 113-149 145-184 (267)
63 2vup_A Glutathione peroxidase- 24.9 15 0.00053 28.0 0.0 11 19-29 2-12 (190)
64 4aqz_A PILQ, type IV pilus bio 24.8 23 0.0008 28.7 1.1 13 19-31 2-14 (138)
65 4fe7_A Xylose operon regulator 24.7 18 0.00063 30.9 0.5 14 19-32 2-15 (412)
66 3o0i_A HSP90AA1 protein; HSP90 24.7 12 0.00043 32.8 -0.6 38 113-155 95-133 (256)
67 2guh_A Putative TETR-family tr 24.5 16 0.00054 28.2 0.0 11 19-29 2-12 (214)
68 2w1s_A Hyaluronoglucosaminidas 24.3 15 0.00052 29.9 -0.1 24 19-42 2-30 (192)
69 2iai_A Putative transcriptiona 24.0 18 0.00062 27.6 0.3 14 19-32 2-15 (230)
70 3kh7_A Thiol:disulfide interch 24.0 16 0.00056 27.6 0.0 54 52-106 28-86 (176)
71 3k01_A Acarbose/maltose bindin 23.9 16 0.00056 30.5 0.0 25 132-158 155-181 (412)
72 3q9v_A DNA-binding response re 23.9 16 0.00056 28.0 0.0 26 19-44 2-27 (133)
73 2bf9_A Pancreatic hormone; tur 23.6 68 0.0023 21.5 3.0 25 83-107 10-35 (36)
74 3tj1_A RNA polymerase I-specif 23.2 28 0.00095 34.6 1.4 51 89-151 71-121 (649)
75 2zvv_A PCNA 1, proliferating c 23.2 17 0.00059 30.4 0.0 15 230-244 222-236 (276)
76 2fsj_A Hypothetical protein TA 23.1 17 0.0006 31.4 0.0 11 19-29 2-12 (346)
77 3d40_A FOMA protein; fosfomyci 23.0 21 0.00072 30.6 0.5 18 88-105 44-61 (286)
78 3h8v_A Ubiquitin-like modifier 22.6 21 0.00071 31.5 0.4 44 19-62 2-48 (292)
79 2x0s_A Pyruvate phosphate diki 22.5 97 0.0033 31.5 5.2 84 85-169 734-838 (913)
80 1zye_A Thioredoxin-dependent p 22.3 19 0.00063 28.8 0.0 15 53-67 26-40 (220)
81 2k4z_A DSRR; ISCA/SUFA/HESB li 22.2 28 0.00096 27.0 1.0 11 19-29 2-12 (125)
82 1h6z_A Pyruvate phosphate diki 22.1 1E+02 0.0034 31.8 5.2 43 85-128 734-777 (913)
83 2gmw_A D,D-heptose 1,7-bisphos 22.1 19 0.00064 28.0 0.0 19 184-202 130-149 (211)
84 2of7_A Putative TETR-family tr 22.0 19 0.00065 28.4 0.0 11 19-29 4-14 (260)
85 1p7t_A MSG, malate synthase G; 21.9 1E+02 0.0035 31.4 5.2 39 86-127 395-433 (731)
86 2y78_A Peptidyl-prolyl CIS-tra 21.9 20 0.00067 27.5 0.1 11 19-29 2-12 (133)
87 1z9v_A Conserved hypothetical 21.8 19 0.00066 29.5 0.0 24 19-44 2-25 (121)
88 3vol_A Aerotaxis transducer AE 21.7 19 0.00066 28.7 0.0 15 143-157 143-157 (233)
89 2p6p_A Glycosyl transferase; X 21.7 88 0.003 25.7 3.9 44 137-182 329-372 (384)
90 2khi_A 30S ribosomal protein S 21.6 20 0.00067 26.9 0.0 13 19-31 2-14 (115)
91 2jg1_A Tagatose-6-phosphate ki 21.5 20 0.00067 30.1 0.0 11 19-29 2-12 (330)
92 3cux_A Malate synthase; TIM ba 21.4 1.1E+02 0.0037 29.7 5.0 39 85-126 213-251 (528)
93 3fs7_A Parvalbumin, thymic; ca 21.4 20 0.00068 24.4 0.0 41 131-171 50-90 (109)
94 3kxa_A NGO0477 protein, putati 21.3 7.4 0.00025 30.1 -2.5 32 140-171 82-120 (141)
95 2hlz_A Ketohexokinase; non-pro 21.3 20 0.00068 29.7 0.0 12 20-31 2-13 (312)
96 3gru_A Dimethyladenosine trans 21.2 20 0.00069 31.1 0.0 11 19-29 2-12 (295)
97 2wte_A CSA3; antiviral protein 21.1 56 0.0019 27.7 2.7 24 23-46 3-28 (244)
98 3dci_A Arylesterase; SGNH_hydr 21.1 20 0.0007 27.9 0.0 11 19-29 2-12 (232)
99 1q1c_A FK506-binding protein 4 21.0 21 0.0007 30.8 0.0 12 19-30 2-13 (280)
100 1bba_A Bovine pancreatic polyp 20.8 61 0.0021 21.7 2.3 25 83-107 10-35 (36)
101 4eo3_A Bacterioferritin comigr 20.7 1E+02 0.0036 26.6 4.4 50 92-153 126-175 (322)
102 2i81_A 2-Cys peroxiredoxin; st 20.7 21 0.00072 28.5 0.0 13 19-31 2-14 (213)
103 1y8a_A Hypothetical protein AF 20.6 21 0.00072 29.9 0.0 11 95-105 107-117 (332)
104 1dxe_A 2-dehydro-3-deoxy-galac 20.5 55 0.0019 27.4 2.6 37 113-149 145-184 (256)
105 1f8p_A Neuropeptide Y (PNPY); 20.5 84 0.0029 21.1 2.9 25 83-107 10-35 (37)
106 1jyk_A LICC protein, CTP:phosp 20.4 21 0.00073 29.1 0.0 21 96-119 59-79 (254)
107 3bni_A Putative TETR-family tr 20.2 22 0.00074 27.3 0.0 11 19-29 2-12 (229)
108 3l7y_A Putative uncharacterize 20.2 22 0.00074 29.0 0.0 17 205-221 237-253 (304)
109 3qc1_A Immunoglobulin-binding 20.1 36 0.0012 29.5 1.3 20 90-109 57-76 (243)
No 1
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=67.57 E-value=1.1 Score=37.55 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=0.0
Q ss_pred CCCcccccccccccchhhhccchhhh
Q 024782 19 GDNQINQHHPLFAATSWRASKLCLCC 44 (262)
Q Consensus 19 ~~~~~~~hh~l~~~~~~~~~~~~~~~ 44 (262)
++++|||||+. .|+.+..|-
T Consensus 2 ~~~~~~~~~~~------~~~~l~~Cg 21 (414)
T 3quf_A 2 GSSHHHHHHSS------GRENLYFQG 21 (414)
T ss_dssp --------------------------
T ss_pred CCccccccccc------cchhhhhcc
Confidence 45667777765 566666663
No 2
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=66.99 E-value=7.1 Score=34.81 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=40.1
Q ss_pred CChHhHHHHHHHHHHHHHHHhhcccccc-ceEEEEEecCcHHHHHHHhhCCCCCCCCC--hHHHHHHHHH
Q 024782 85 ATPEDLENIAQVKRVLELLRKNRDMLFS-EVKLTIMIEDPREVERRRLLGIEDSNAPT--RDDLAEALEQ 151 (262)
Q Consensus 85 ~~p~dl~~v~eIk~vL~lLk~~RDMsFn-EVKLTi~IEDPR~~Errr~lGIED~~g~s--rddla~AL~e 151 (262)
-|++|++.++++.+-.+.--+.+...|| ++++-+|||.|+.++.=..+-=. -|++| -.||...+--
T Consensus 145 ~s~~E~~~a~~~v~~~~~~~r~~G~~~~~~~~vg~mIEtp~av~~~d~Ia~~-vD~~siGtnDLtq~~lg 213 (324)
T 2xz9_A 145 SSVEEVRKANSILEEVKAELDREGVKYDKEIKVGIMVEIPSAAVTADILAKE-VDFFSIGTNDLTQYTLA 213 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCCCCTTCEEEEEECSHHHHHTHHHHTTT-CSEEEECHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEECcHHHHHHHHHHHHh-CcEEEECHHHHHHHHhC
Confidence 4667766666655444332224455676 59999999999999874333111 44433 5677766533
No 3
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=63.95 E-value=12 Score=27.38 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhhccccccceEEEEEecCcHHHHHH-Hhh-C--------CCCC---CCCChHHHHHHHHHhh
Q 024782 92 NIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERR-RLL-G--------IEDS---NAPTRDDLAEALEQVN 153 (262)
Q Consensus 92 ~v~eIk~vL~lLk~~RDMsFnEVKLTi~IEDPR~~Err-r~l-G--------IED~---~g~srddla~AL~eV~ 153 (262)
||...|++|+- +...|.|+.+. +||..++.= ++. | |.|. .+++.+++.++|.++.
T Consensus 16 ~C~~aK~~L~~----~gi~y~~idi~---~d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~L~el~ 83 (92)
T 2lqo_A 16 YCLRLKTALTA----NRIAYDEVDIE---HNRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAKLVKIA 83 (92)
T ss_dssp SHHHHHHHHHH----TTCCCEEEETT---TCHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHh----cCCceEEEEcC---CCHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHHHHHhc
Confidence 78888887753 57889887764 677765542 222 4 3443 3678899999998864
No 4
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=57.84 E-value=3.7 Score=28.24 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=23.4
Q ss_pred chhhhhhhcchhhHHHhHHHHHhhhccC
Q 024782 234 GYGALYLVTAFPVIIGISVVLILFYNSL 261 (262)
Q Consensus 234 GygaLYLVSa~PViI~I~vVlILFyNSL 261 (262)
|=-+|+||-.+-=+.+|+++.|.||-|-
T Consensus 6 GRiPLWlvgtv~G~~vi~~~giFfyGsY 33 (40)
T 3arc_J 6 GRIPLWIVATVAGMGVIVIVGLFFYGAY 33 (40)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcccEEeeeeehhhhhhheeeEEEeecc
Confidence 5667888888888888999999999763
No 5
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria, glycolysis, I structural genomics consortium, SGC; 2.01A {Cryptosporidium parvum}
Probab=57.75 E-value=3.3 Score=34.28 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=16.4
Q ss_pred CCCcccccccccccchhhhccchhhhccccc-CcccccccCCCCccc
Q 024782 19 GDNQINQHHPLFAATSWRASKLCLCCSRRSS-QRVVALVGKGDTDLR 64 (262)
Q Consensus 19 ~~~~~~~hh~l~~~~~~~~~~~~~~~~rr~s-~~~~~~~g~e~~~~~ 64 (262)
+++.+||||+.=+..+..-.++-+.||-.+. |.....-|.-|..|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~M~~l~LvRHGet~~n~~~~~~G~~D~pLt 48 (267)
T 3d8h_A 2 GSSHHHHHHSSGLVPRGSTYKLTLIRHGESEWNKENRFTGWTDVSLS 48 (267)
T ss_dssp ------------------CEEEEEEECCCBTTTTTTBCCTTCCCCBC
T ss_pred CccccccccccCCCCcccceEEEEEeCCCCccccccccCCCCCCCcC
Confidence 4556777787655544444578889998764 333334455555443
No 6
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=54.53 E-value=6.9 Score=33.81 Aligned_cols=27 Identities=48% Similarity=0.608 Sum_probs=22.5
Q ss_pred ccceEEEEEecCcHHHHHHH----hhCCCCC
Q 024782 111 FSEVKLTIMIEDPREVERRR----LLGIEDS 137 (262)
Q Consensus 111 FnEVKLTi~IEDPR~~Errr----~lGIED~ 137 (262)
=++.|.|+|||=|...|||+ +.||||.
T Consensus 84 ~~~l~ATl~IE~~d~~er~~~L~~L~Gie~~ 114 (194)
T 3fjv_A 84 GSNLKATLQIEYENETQRRAALARLVGIEDR 114 (194)
T ss_dssp SSEEEEEEEECCSSHHHHHHHHHHTTTGGGS
T ss_pred CCcEEEEEEEEcCCHHHHHHHHHHhcCccce
Confidence 36899999999999999976 4588874
No 7
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}
Probab=52.03 E-value=3 Score=34.80 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=0.0
Q ss_pred CCCcccccccccc
Q 024782 19 GDNQINQHHPLFA 31 (262)
Q Consensus 19 ~~~~~~~hh~l~~ 31 (262)
+++.|||||+.|+
T Consensus 2 ~~~~~~~~~~~~~ 14 (287)
T 3rku_A 2 GSSHHHHHHSSFL 14 (287)
T ss_dssp -------------
T ss_pred CCcccccccccee
Confidence 4567888998887
No 8
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=51.65 E-value=20 Score=34.71 Aligned_cols=64 Identities=14% Similarity=0.240 Sum_probs=39.6
Q ss_pred CChHhHHHHHHHHHHHHHHHhhcccccc-ceEEEEEecCcHHHHHHHhh-CCCCCCCCC--hHHHHHHHH
Q 024782 85 ATPEDLENIAQVKRVLELLRKNRDMLFS-EVKLTIMIEDPREVERRRLL-GIEDSNAPT--RDDLAEALE 150 (262)
Q Consensus 85 ~~p~dl~~v~eIk~vL~lLk~~RDMsFn-EVKLTi~IEDPR~~Errr~l-GIED~~g~s--rddla~AL~ 150 (262)
-|+++++.++++.+-.+.--+.+...|| ++++-+|||-|+.+..=..+ .. -|++| -.||.+..-
T Consensus 394 ~t~~E~~~a~~~v~~~~~~l~~~G~~~~~~~~vg~MIE~P~a~~~ad~ia~~--vDf~siGtNDLtqy~l 461 (575)
T 2hwg_A 394 ISVEEVRALRKEIEIYKQELRDEGKAFDESIEIGVMVETPAAATIARHLAKE--VDFFSIGTNDLTQYTL 461 (575)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEECSHHHHHTHHHHHTT--CSEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEECcHHHHHHHHHHHHh--CCEEEECHHHHHHHHh
Confidence 4677777776665433322245667787 69999999999998873322 22 33333 456666443
No 9
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=51.53 E-value=3.5 Score=31.84 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.9
Q ss_pred CChHhHHHHHHHHHHHHHHHhhccc
Q 024782 85 ATPEDLENIAQVKRVLELLRKNRDM 109 (262)
Q Consensus 85 ~~p~dl~~v~eIk~vL~lLk~~RDM 109 (262)
||-. ++-|++...|.+-.|++.||
T Consensus 59 PsL~-~kIAk~fg~w~~~~~~~~~~ 82 (83)
T 2l1p_A 59 ANVS-AAKCQEFGRWYKHFKKTKDM 82 (83)
T ss_dssp CCCC-SHHHHHHHHHHHHHHCCSCC
T ss_pred CCch-HHHHHHHHHHHHHHHHhhhc
Confidence 6666 99999999999999999998
No 10
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=51.46 E-value=4.3 Score=31.70 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=9.7
Q ss_pred CCCcccccccccccchh-hhccchhhhcccccCcccccccCCCCc
Q 024782 19 GDNQINQHHPLFAATSW-RASKLCLCCSRRSSQRVVALVGKGDTD 62 (262)
Q Consensus 19 ~~~~~~~hh~l~~~~~~-~~~~~~~~~~rr~s~~~~~~~g~e~~~ 62 (262)
+++.|||||+. +... ..++++....+ ...++.+|....+
T Consensus 2 ~~~~~~~~~~~--~~~~~~~~~~P~~~~~---~~kI~vvG~~~vG 41 (228)
T 2qu8_A 2 GSSHHHHHHSS--GRENLYFQGLPSINPH---KKTIILSGAPNVG 41 (228)
T ss_dssp ----------------------CCSCCTT---SEEEEEECSTTSS
T ss_pred Ccccccccccc--cchhheeccCCCCCCC---CCEEEEECCCCCC
Confidence 34556666664 3221 33355532222 2456666665544
No 11
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=50.44 E-value=20 Score=34.65 Aligned_cols=44 Identities=23% Similarity=0.202 Sum_probs=30.3
Q ss_pred CChHhHHHHHHHHHHHHHHHhhcccccc-ceEEEEEecCcHHHHH
Q 024782 85 ATPEDLENIAQVKRVLELLRKNRDMLFS-EVKLTIMIEDPREVER 128 (262)
Q Consensus 85 ~~p~dl~~v~eIk~vL~lLk~~RDMsFn-EVKLTi~IEDPR~~Er 128 (262)
-|+++++.++++.+-.+.--+.+...|| ++++-+|||-|+.+..
T Consensus 396 ~s~~E~~~a~~~v~~~~~~l~~~G~~~~~~~~vg~MIE~P~a~~~ 440 (572)
T 2wqd_A 396 ATINEFREAKAILLEEKENLKNEGHDISDDIELGIMVEIPATAAL 440 (572)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTCCCCSCCEEEEEECCHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEEccHHHHHH
Confidence 4667777666554332221145667787 6999999999999886
No 12
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=49.69 E-value=3.5 Score=30.81 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=4.1
Q ss_pred CCcccccccccccc
Q 024782 20 DNQINQHHPLFAAT 33 (262)
Q Consensus 20 ~~~~~~hh~l~~~~ 33 (262)
++.+||||+.|+.+
T Consensus 2 ~~~~~~~~~~~~ls 15 (66)
T 2acm_A 2 SSHHHHHHSFFFLS 15 (66)
T ss_dssp --------CEEEEE
T ss_pred CCcccccchhHHHH
Confidence 45667777777665
No 13
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=49.05 E-value=13 Score=25.01 Aligned_cols=63 Identities=21% Similarity=0.308 Sum_probs=42.0
Q ss_pred CChHhHHHHHHHHHHHHHHHhhccccccceEEEEEecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhhcCCCCchHHHH
Q 024782 85 ATPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVAL 164 (262)
Q Consensus 85 ~~p~dl~~v~eIk~vL~lLk~~RDMsFnEVKLTi~IEDPR~~Errr~lGIED~~g~srddla~AL~eV~eGriP~dr~AL 164 (262)
.||+++.+...+...|+.+++.+.||-.|+- +.+|| |+ .++-.+..|+.+-+-..+
T Consensus 2 lt~~~~~~~~~l~~~l~~~r~~~gltq~~lA--------------~~~gv------s~----~~is~~e~g~~~~~~~~~ 57 (80)
T 3kz3_A 2 LTQEQLEDARRLKAIWEKKKNELGLSYESVA--------------DKMGM------GQ----SAVAALFNGINALNAYNA 57 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCCHHHHH--------------HHTTS------CH----HHHHHHHTTSSCCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--------------HHhCc------CH----HHHHHHHcCCCCCCHHHH
Confidence 5789999999999999888887766654431 23443 32 345566677766555666
Q ss_pred HHHHHHH
Q 024782 165 RMLAEEM 171 (262)
Q Consensus 165 ~~L~eEm 171 (262)
..|++-+
T Consensus 58 ~~ia~~l 64 (80)
T 3kz3_A 58 ALLAKIL 64 (80)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6676654
No 14
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=48.63 E-value=3.7 Score=32.91 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred CCCcccccccccccchhh
Q 024782 19 GDNQINQHHPLFAATSWR 36 (262)
Q Consensus 19 ~~~~~~~hh~l~~~~~~~ 36 (262)
+++.+||||+.+-+.+|+
T Consensus 2 ~~~~~~~~~~~l~~isl~ 19 (218)
T 1z6g_A 2 GSSHHHHHHSSGLVPRGS 19 (218)
T ss_dssp ------------------
T ss_pred CCcccccccccccCCcee
Confidence 456788899988887775
No 15
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=46.01 E-value=7.3 Score=29.56 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=7.0
Q ss_pred cccccccCCCCc
Q 024782 51 RVVALVGKGDTD 62 (262)
Q Consensus 51 ~~~~~~g~e~~~ 62 (262)
..+..+|....+
T Consensus 30 ~ki~v~G~~~vG 41 (192)
T 2b6h_A 30 MRILMVGLDAAG 41 (192)
T ss_dssp EEEEEEESTTSS
T ss_pred cEEEEECCCCCC
Confidence 456666665544
No 16
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=45.45 E-value=7.8 Score=30.42 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=25.7
Q ss_pred CCCccccccccccc--chhhhccchhhhcccccCcccccccCCCCccc
Q 024782 19 GDNQINQHHPLFAA--TSWRASKLCLCCSRRSSQRVVALVGKGDTDLR 64 (262)
Q Consensus 19 ~~~~~~~hh~l~~~--~~~~~~~~~~~~~rr~s~~~~~~~g~e~~~~~ 64 (262)
|.+.+||||.-... ..|-..-..||..|.+.-...|.+|..+.+|-
T Consensus 4 ~~~~~~~~~~~~~~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~lDL~ 51 (123)
T 1kkx_A 4 SGSHHHHHHGSNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLF 51 (123)
T ss_dssp -----------CCCHHHHHHHHHHHHHHHTTCSSSSCCCCSSSSCCTT
T ss_pred CCcccccccCCcchhHHHHHHHHHHHHHHcCCCCCcCceECCEeecHH
Confidence 44555666665443 56665566788877766557899999999986
No 17
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=45.04 E-value=74 Score=22.38 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=44.0
Q ss_pred cceEEEEEecCc--HHHHHHHhhCCCC--CCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcC
Q 024782 112 SEVKLTIMIEDP--REVERRRLLGIED--SNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMVQW 174 (262)
Q Consensus 112 nEVKLTi~IEDP--R~~Errr~lGIED--~~g~srddla~AL~eV~eGriP~dr~AL~~L~eEm~~W 174 (262)
..+++.+..... ....+-...|..| ....+.+++..++..+-+|+.+-.....+.|.+++..=
T Consensus 78 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 144 (153)
T 3cz5_A 78 GAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRRAMSPDIAQEIAEERVEG 144 (153)
T ss_dssp TTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCCEECHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCccCChHHHHHHHhhcCCC
Confidence 456666655443 3333333466654 34578899999999999999988888888888777653
No 18
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=42.62 E-value=78 Score=22.20 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=30.4
Q ss_pred cceEEEEEecCcH--HHHHHHhhCCCC--CCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 024782 112 SEVKLTIMIEDPR--EVERRRLLGIED--SNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (262)
Q Consensus 112 nEVKLTi~IEDPR--~~Errr~lGIED--~~g~srddla~AL~eV~eGriP~dr~AL~~L~eEm 171 (262)
..+++.++-.... ...+-..+|..+ ....+.+++.+++..+-.|+..-....++.|.+++
T Consensus 88 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~ 151 (152)
T 3eul_A 88 LPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGLAGEI 151 (152)
T ss_dssp CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC---------------
T ss_pred CCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCeeeCHHHHHHHhhcc
Confidence 4566666555443 333334456654 34678999999999999998877777777766654
No 19
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=42.18 E-value=5.3 Score=32.75 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCcccccccc
Q 024782 19 GDNQINQHHPL 29 (262)
Q Consensus 19 ~~~~~~~hh~l 29 (262)
++++|||||+.
T Consensus 2 ~~~~~~~~~~~ 12 (330)
T 2qry_A 2 GSSHHHHHHSS 12 (330)
T ss_dssp -----------
T ss_pred CCccccccccc
Confidence 34556666654
No 20
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=41.70 E-value=7.6 Score=26.42 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=23.4
Q ss_pred hCCCCCCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 024782 132 LGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (262)
Q Consensus 132 lGIED~~g~srddla~AL~eV~eGriP~dr~AL~~L~eEm 171 (262)
+......-+|.+|+..+|..+..+..+-...-++.+.+++
T Consensus 50 ~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (109)
T 1rwy_A 50 LDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAG 89 (109)
T ss_dssp HSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred HCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 3333333489999999999886422333333455555443
No 21
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=40.39 E-value=19 Score=27.24 Aligned_cols=40 Identities=8% Similarity=0.039 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhhccccccceEEEEEecCcHHHHHHHhhCCC
Q 024782 90 LENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIE 135 (262)
Q Consensus 90 l~~v~eIk~vL~lLk~~RDMsFnEVKLTi~IEDPR~~Errr~lGIE 135 (262)
=-+|..++.+|+-|.......|.+|.++ +||...++ +|+.
T Consensus 40 C~~C~~a~~~L~~l~~e~~i~~~~vDId---~d~~l~~~---ygv~ 79 (107)
T 2fgx_A 40 CHLCEEMIASLRVLQKKSWFELEVINID---GNEHLTRL---YNDR 79 (107)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCEEEETT---TCHHHHHH---STTS
T ss_pred ChhHHHHHHHHHHHHHhcCCeEEEEECC---CCHHHHHH---hCCC
Confidence 4589999999999988878888877654 68876654 6763
No 22
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=40.13 E-value=6 Score=31.57 Aligned_cols=27 Identities=7% Similarity=0.238 Sum_probs=20.5
Q ss_pred hccCChHhHHHHHHHHHHHHHHHhhcc
Q 024782 82 EEEATPEDLENIAQVKRVLELLRKNRD 108 (262)
Q Consensus 82 ~~e~~p~dl~~v~eIk~vL~lLk~~RD 108 (262)
..-.+|++...+.+|..-+...++..+
T Consensus 70 ~~~~~~~~~~~l~~i~~~~~~Y~~~f~ 96 (258)
T 2yfa_A 70 TTFKSPENVKLLGELGDTISAYKLSLN 96 (258)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCcccHHHHHHHHHHHHHHHHHHH
Confidence 334679999999999888887777543
No 23
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=39.35 E-value=6.3 Score=35.46 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCcccccccc
Q 024782 19 GDNQINQHHPL 29 (262)
Q Consensus 19 ~~~~~~~hh~l 29 (262)
|+++|||||+.
T Consensus 2 ~~~~~~~~~~s 12 (368)
T 2q58_A 2 GSSHHHHHHSS 12 (368)
T ss_dssp -----------
T ss_pred CCccccccccC
Confidence 56677888876
No 24
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=38.28 E-value=23 Score=23.95 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=45.4
Q ss_pred cCChHhHHHHHHHHHHHHHHHhhccccccceEEEEEecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhhcCCCCchHHH
Q 024782 84 EATPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVA 163 (262)
Q Consensus 84 e~~p~dl~~v~eIk~vL~lLk~~RDMsFnEVKLTi~IEDPR~~Errr~lGIED~~g~srddla~AL~eV~eGriP~dr~A 163 (262)
..+++++.+...|...|+.+++.+.||-.|+ . +.+|| |+ .++-.+..|+.+-+...
T Consensus 6 ~~~~~~~~~~~~l~~~l~~~R~~~glsq~~l-----------A---~~~gi------s~----~~is~~e~g~~~~~~~~ 61 (92)
T 1lmb_3 6 PLTQEQLEDARRLKAIYEKKKNELGLSQESV-----------A---DKMGM------GQ----SGVGALFNGINALNAYN 61 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTCCHHHH-----------H---HHHTS------CH----HHHHHHHTTSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCHHHH-----------H---HHHCc------CH----HHHHHHHcCCCCCCHHH
Confidence 4678888899999999999999988885543 1 23453 43 45666777876656666
Q ss_pred HHHHHHHH
Q 024782 164 LRMLAEEM 171 (262)
Q Consensus 164 L~~L~eEm 171 (262)
+..|++-+
T Consensus 62 l~~ia~~l 69 (92)
T 1lmb_3 62 AALLAKIL 69 (92)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777765
No 25
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=37.85 E-value=9.6 Score=33.98 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCcccccccc
Q 024782 19 GDNQINQHHPL 29 (262)
Q Consensus 19 ~~~~~~~hh~l 29 (262)
++++|||||+.
T Consensus 2 ~~~~~~~~~~~ 12 (456)
T 4dcu_A 2 GSSHHHHHHSS 12 (456)
T ss_dssp -----------
T ss_pred CCccccccccC
Confidence 45566777765
No 26
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=37.28 E-value=7.5 Score=26.49 Aligned_cols=67 Identities=4% Similarity=0.052 Sum_probs=33.9
Q ss_pred hhccccccceEEEEEecCcHHHHHHHh---hCCCCCCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 024782 105 KNRDMLFSEVKLTIMIEDPREVERRRL---LGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (262)
Q Consensus 105 ~~RDMsFnEVKLTi~IEDPR~~Errr~---lGIED~~g~srddla~AL~eV~eGriP~dr~AL~~L~eEm 171 (262)
.+-.++|.|..-.+........+=++. +......-+|.+|+..+|..+..+..+-+..-++.+.+++
T Consensus 21 ~~g~i~~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 90 (110)
T 1pva_A 21 AEGSFNHKKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAA 90 (110)
T ss_dssp STTCCCHHHHHHHHTCTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHccCcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh
Confidence 444566666543322222222233333 4433344489999999998875422333334455555543
No 27
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=36.29 E-value=7.5 Score=30.22 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCcccccccc
Q 024782 19 GDNQINQHHPL 29 (262)
Q Consensus 19 ~~~~~~~hh~l 29 (262)
+++.||||||.
T Consensus 2 ~~~~~~~~~~~ 12 (201)
T 2ew1_A 2 GSSHHHHHHSS 12 (201)
T ss_dssp -----------
T ss_pred Ccccccccccc
Confidence 45667777765
No 28
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=36.15 E-value=7.5 Score=30.27 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCcccccccc
Q 024782 19 GDNQINQHHPL 29 (262)
Q Consensus 19 ~~~~~~~hh~l 29 (262)
++++|||||+.
T Consensus 2 ~~~~~~~~~~~ 12 (272)
T 2pvu_A 2 GSSHHHHHHSS 12 (272)
T ss_dssp -----------
T ss_pred Ccccccccccc
Confidence 34566667764
No 29
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=33.49 E-value=28 Score=25.92 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=18.5
Q ss_pred CCChHHHHHHHHHhhcCCCCchH
Q 024782 139 APTRDDLAEALEQVNEGKVPKNR 161 (262)
Q Consensus 139 g~srddla~AL~eV~eGriP~dr 161 (262)
.-|+|+|.+|++.|.+|+..--+
T Consensus 13 ~Yte~~L~~Ai~aVr~g~mS~~~ 35 (70)
T 2cob_A 13 QYNSEILEEAISVVMSGKMSVSK 35 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSSCHHH
T ss_pred ccCHHHHHHHHHHHHcCCccHHH
Confidence 36899999999999999854433
No 30
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=32.09 E-value=9.6 Score=31.57 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=0.0
Q ss_pred CCCcccccccccccc
Q 024782 19 GDNQINQHHPLFAAT 33 (262)
Q Consensus 19 ~~~~~~~hh~l~~~~ 33 (262)
++++|||||+-..+.
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (341)
T 3un6_A 2 GSSHHHHHHENLYFQ 16 (341)
T ss_dssp ---------------
T ss_pred CCccccccchhHHHh
Confidence 456777788876654
No 31
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=31.68 E-value=9.3 Score=26.02 Aligned_cols=41 Identities=10% Similarity=0.116 Sum_probs=23.5
Q ss_pred hhCCCCCCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 024782 131 LLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (262)
Q Consensus 131 ~lGIED~~g~srddla~AL~eV~eGriP~dr~AL~~L~eEm 171 (262)
.+.......+|.+|+..+|..+..+..+-+..-++.+.+++
T Consensus 49 ~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (108)
T 2pvb_A 49 VIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADG 89 (108)
T ss_dssp HHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred HHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Confidence 34433334489999999988775422333334455555544
No 32
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=30.93 E-value=11 Score=29.43 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=2.4
Q ss_pred CCCcccccccccccc
Q 024782 19 GDNQINQHHPLFAAT 33 (262)
Q Consensus 19 ~~~~~~~hh~l~~~~ 33 (262)
|++.+||||+.|-+-
T Consensus 2 ~~~~~~~~~~~~~~L 16 (108)
T 3o39_A 2 GSSHHHHHHGSFKDL 16 (108)
T ss_dssp -----------CCCS
T ss_pred CCcccccccCCcCCC
Confidence 456778888887653
No 33
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=30.34 E-value=22 Score=23.55 Aligned_cols=28 Identities=7% Similarity=-0.034 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhhccccccceEEEE
Q 024782 91 ENIAQVKRVLELLRKNRDMLFSEVKLTI 118 (262)
Q Consensus 91 ~~v~eIk~vL~lLk~~RDMsFnEVKLTi 118 (262)
-+|..++.+|+-|-+.....|..+++..
T Consensus 13 ~~C~~~~~~l~~~~~~~~~~~~~~~v~~ 40 (80)
T 2k8s_A 13 PVCVSAEQAVANAIDPSKYTVEIVHLGT 40 (80)
T ss_dssp HHHHHHHHHHHHHSCTTTEEEEEEETTT
T ss_pred CchHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 4799999999877766666777777654
No 34
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=30.16 E-value=23 Score=29.67 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=17.8
Q ss_pred CCCcccccccccccchhhhccchhhhcccccCcccccccCCCCccccccccccccccchhhhhhccCChHhHHHHHH
Q 024782 19 GDNQINQHHPLFAATSWRASKLCLCCSRRSSQRVVALVGKGDTDLRVAQENDLQDQDQEDEEEEEEATPEDLENIAQ 95 (262)
Q Consensus 19 ~~~~~~~hh~l~~~~~~~~~~~~~~~~rr~s~~~~~~~g~e~~~~~v~~~~~~~~~~~~~~~~~~e~~p~dl~~v~e 95 (262)
|++.+||||...++..+.- .+ +|+ --....|..+.++.|- ++.+.++--|+...+..|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~r-~~-----~r~--~kn~v~~ys~~E~kVr---------eATnnd~wGPs~~~m~eIa~ 60 (176)
T 1xgw_A 1 GSSHHHHHHGSMLNMWKVR-EL-----VDK--ATNVVMNYSEIESKVR---------EATNDDPWGPSGQLMGEIAK 60 (176)
T ss_dssp -----------------------------------CCCCCCHHHHHHH---------HHTCSCSSCCCHHHHHHHHH
T ss_pred CCCccccccchhhhHHHHH-HH-----HHH--HHHHhcCCCHHHHHHH---------HHcCCCCCCCCHHHHHHHHH
Confidence 3567788888877753321 11 111 1223344455555443 33444456688777766654
No 35
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=29.41 E-value=11 Score=34.60 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred CCCcccccccccccchhh
Q 024782 19 GDNQINQHHPLFAATSWR 36 (262)
Q Consensus 19 ~~~~~~~hh~l~~~~~~~ 36 (262)
++++|||||+.-+-.+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (458)
T 3nmz_A 2 GSSHHHHHHSSGLVPRGS 19 (458)
T ss_dssp ------------------
T ss_pred CCcccccccccccCCCCC
Confidence 455677777764444444
No 36
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=29.39 E-value=58 Score=25.79 Aligned_cols=29 Identities=7% Similarity=0.107 Sum_probs=18.8
Q ss_pred HhHHHHHHHHHHHHHHHhhccccccceEE
Q 024782 88 EDLENIAQVKRVLELLRKNRDMLFSEVKL 116 (262)
Q Consensus 88 ~dl~~v~eIk~vL~lLk~~RDMsFnEVKL 116 (262)
=+...+.+.+.-|.-+++++--.|..|..
T Consensus 65 ~~~~~l~~~~~~I~~~y~~~GY~~a~v~~ 93 (189)
T 3q6b_A 65 YNGTKVTKMEDDIKKLLGRYGYAYPRVQS 93 (189)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred eCHHHHHHHHHHHHHHHHhCCCceEEeeE
Confidence 34455566667777777777777666555
No 37
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=29.07 E-value=12 Score=30.89 Aligned_cols=9 Identities=22% Similarity=0.468 Sum_probs=0.0
Q ss_pred Ccccccccc
Q 024782 21 NQINQHHPL 29 (262)
Q Consensus 21 ~~~~~hh~l 29 (262)
++|||||+.
T Consensus 4 ~~~~~~~~~ 12 (343)
T 2v84_A 4 SHHHHHHSS 12 (343)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 455666654
No 38
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=29.07 E-value=12 Score=27.12 Aligned_cols=17 Identities=6% Similarity=0.139 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 024782 90 LENIAQVKRVLELLRKN 106 (262)
Q Consensus 90 l~~v~eIk~vL~lLk~~ 106 (262)
=.+|+.....|+-|.+.
T Consensus 52 C~~C~~~~p~l~~l~~~ 68 (128)
T 2o8v_B 52 CGPAKMIAPILDEIADE 68 (128)
T ss_dssp CHHHHHTHHHHHHHHHH
T ss_pred CHHHHHHhHHHHHHHHH
Confidence 35788888887777654
No 39
>4f27_A Clumping factor B; DEV-IGG fold, protein-peptide complex, fibronogen, cell SURF adhesion-blood clotting complex; 1.92A {Staphylococcus aureus} PDB: 4f20_A 4f24_A 4f1z_A 3au0_A 3at0_A 3asw_A
Probab=28.38 E-value=12 Score=31.92 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=0.0
Q ss_pred CCCcccccccccccchh
Q 024782 19 GDNQINQHHPLFAATSW 35 (262)
Q Consensus 19 ~~~~~~~hh~l~~~~~~ 35 (262)
++++||||-+||+..++
T Consensus 3 ~~~~~~~~~~~~~~~s~ 19 (363)
T 4f27_A 3 GSHHHHHHENLYFQGSL 19 (363)
T ss_dssp -----------------
T ss_pred Cccccccccceeeeeeh
Confidence 34455555567765433
No 40
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1
Probab=28.16 E-value=12 Score=29.05 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=0.0
Q ss_pred CCCcccccccccc
Q 024782 19 GDNQINQHHPLFA 31 (262)
Q Consensus 19 ~~~~~~~hh~l~~ 31 (262)
+++.+||||.|..
T Consensus 2 ~~~~~~~~~~~~~ 14 (135)
T 1q5l_A 2 GSSHHHHHHGLVP 14 (135)
T ss_dssp -------------
T ss_pred CccccccccCcEe
Confidence 4567788888764
No 41
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=27.99 E-value=12 Score=27.94 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCcccccccc
Q 024782 19 GDNQINQHHPL 29 (262)
Q Consensus 19 ~~~~~~~hh~l 29 (262)
+++.|||||+.
T Consensus 2 ~~~~~~~~~~~ 12 (192)
T 2fg5_A 2 GSSHHHHHHSS 12 (192)
T ss_dssp -----------
T ss_pred Ccccccccccc
Confidence 34556667764
No 42
>2wbn_A G2P, terminase large subunit; large terminase, nuclease, viral protein, DNA packaging; 1.90A {Bacillus phage SPP1} PDB: 2wc9_A
Probab=27.78 E-value=13 Score=30.67 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=0.0
Q ss_pred CCCcccccccccc
Q 024782 19 GDNQINQHHPLFA 31 (262)
Q Consensus 19 ~~~~~~~hh~l~~ 31 (262)
+++.+||||+.++
T Consensus 2 ~~~~~~~~~~~~y 14 (212)
T 2wbn_A 2 GSSHHHHHHSSGL 14 (212)
T ss_dssp -------------
T ss_pred CcccccccccHHH
Confidence 4566777777643
No 43
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=27.71 E-value=16 Score=27.50 Aligned_cols=11 Identities=18% Similarity=0.338 Sum_probs=5.3
Q ss_pred cccccccCCCC
Q 024782 51 RVVALVGKGDT 61 (262)
Q Consensus 51 ~~~~~~g~e~~ 61 (262)
..+..+|....
T Consensus 29 ~ki~v~G~~~~ 39 (199)
T 2p5s_A 29 YKIVLAGDAAV 39 (199)
T ss_dssp EEEEEESSTTS
T ss_pred eEEEEECcCCC
Confidence 34555555443
No 44
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=27.52 E-value=13 Score=27.39 Aligned_cols=15 Identities=20% Similarity=0.301 Sum_probs=0.0
Q ss_pred CCCcccccccccccc
Q 024782 19 GDNQINQHHPLFAAT 33 (262)
Q Consensus 19 ~~~~~~~hh~l~~~~ 33 (262)
+++.||+||+++.++
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (185)
T 3kx0_X 2 GSSHHHHHHSSGLVP 16 (185)
T ss_dssp ---------------
T ss_pred CcccccccccccccC
Confidence 455667777776654
No 45
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Probab=27.25 E-value=15 Score=27.12 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=5.4
Q ss_pred ccccccccccchh
Q 024782 23 INQHHPLFAATSW 35 (262)
Q Consensus 23 ~~~hh~l~~~~~~ 35 (262)
+||||+|..+...
T Consensus 2 ~~~~~~~~~~~~~ 14 (106)
T 2h2k_A 2 HHHHHSLMAAEPL 14 (106)
T ss_dssp -----CTGGGSCC
T ss_pred CcchHHHhhcccC
Confidence 6788898877533
No 46
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=26.76 E-value=14 Score=27.91 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=0.4
Q ss_pred CCCccccccccc
Q 024782 19 GDNQINQHHPLF 30 (262)
Q Consensus 19 ~~~~~~~hh~l~ 30 (262)
+++.+||||+..
T Consensus 2 ~~~~~~~~~~~~ 13 (120)
T 2p32_A 2 GSSHHHHHHSSG 13 (120)
T ss_dssp -----------C
T ss_pred CccccchhhHHH
Confidence 345666677653
No 47
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=26.75 E-value=14 Score=30.63 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCcccccccc
Q 024782 19 GDNQINQHHPL 29 (262)
Q Consensus 19 ~~~~~~~hh~l 29 (262)
++++|||||+.
T Consensus 2 ~~~~~~~~~~~ 12 (253)
T 3gzg_A 2 GSSHHHHHHSS 12 (253)
T ss_dssp -----------
T ss_pred Ccccccccccc
Confidence 34556667764
No 48
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=26.72 E-value=14 Score=31.21 Aligned_cols=10 Identities=20% Similarity=0.378 Sum_probs=0.0
Q ss_pred CCcccccccc
Q 024782 20 DNQINQHHPL 29 (262)
Q Consensus 20 ~~~~~~hh~l 29 (262)
+++|||||--
T Consensus 3 ~~~~~~~~~~ 12 (420)
T 4hw8_A 3 SSHHHHHHEN 12 (420)
T ss_dssp ----------
T ss_pred Cccccccccc
Confidence 4455666643
No 49
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=26.01 E-value=14 Score=28.37 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=0.0
Q ss_pred CCCccccccccc
Q 024782 19 GDNQINQHHPLF 30 (262)
Q Consensus 19 ~~~~~~~hh~l~ 30 (262)
+++.|||||+.-
T Consensus 2 ~~~~~~~~~~~~ 13 (207)
T 2qt1_A 2 GSSHHHHHHSSG 13 (207)
T ss_dssp ------------
T ss_pred CCcccccccccc
Confidence 455667777653
No 50
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=25.85 E-value=14 Score=28.16 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCcccccccc
Q 024782 19 GDNQINQHHPL 29 (262)
Q Consensus 19 ~~~~~~~hh~l 29 (262)
+++.|||||+.
T Consensus 2 ~~~~~~~~~~~ 12 (179)
T 3ixr_A 2 GSSHHHHHHSS 12 (179)
T ss_dssp -----------
T ss_pred Ccccccccccc
Confidence 34566667765
No 51
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=25.80 E-value=14 Score=32.38 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=0.0
Q ss_pred cCCCcccccccc
Q 024782 18 HGDNQINQHHPL 29 (262)
Q Consensus 18 ~~~~~~~~hh~l 29 (262)
|+++.|||||+.
T Consensus 1 ~~~~~~~~~~~~ 12 (403)
T 3k5i_A 1 HGSSHHHHHHSS 12 (403)
T ss_dssp ------------
T ss_pred CCcccccccccc
Confidence 567778888875
No 52
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=25.76 E-value=14 Score=27.68 Aligned_cols=16 Identities=6% Similarity=-0.097 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 024782 91 ENIAQVKRVLELLRKN 106 (262)
Q Consensus 91 ~~v~eIk~vL~lLk~~ 106 (262)
..|......|+-|+++
T Consensus 61 ~~C~~~~p~l~~l~~~ 76 (165)
T 3s9f_A 61 PPCRGFTPQLVEFYEK 76 (165)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3566666666555443
No 53
>3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC, Ca2+-dependent, catalytic TIM barrel, disulfide-LINK loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB: 3h4w_A
Probab=25.71 E-value=66 Score=30.01 Aligned_cols=78 Identities=14% Similarity=0.096 Sum_probs=41.3
Q ss_pred HHHHHHHHhhccccccceEEEEEecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhhcCC--CCchH----HHHHHHHHH
Q 024782 97 KRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGK--VPKNR----VALRMLAEE 170 (262)
Q Consensus 97 k~vL~lLk~~RDMsFnEVKLTi~IEDPR~~Errr~lGIED~~g~srddla~AL~eV~eGr--iP~dr----~AL~~L~eE 170 (262)
+.+|+.+|.-=|.--+++-++|+||+--. -....+...+++.+.+.+|--.+ .|.|= ..|+.-. -
T Consensus 105 ~~CL~~IK~WsdahPsh~PViI~LE~K~t--------~~~~~g~~p~~lDaeI~~vFGd~L~tPddvrG~~~TL~eAV-l 175 (339)
T 3h4x_A 105 AGCLSDMRAWHDAHPGHRPILLKIEMKDG--------FNAKGGRGPAEFDALIRQKLGDAVYGPGDLTGGHATADEAV-R 175 (339)
T ss_dssp HHHHHHHHHHHHHSTTCCCEEEEEEETTC--------CBGGGTBSHHHHHHHHHHHHGGGBCCHHHHHTTSSSHHHHH-H
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEecccC--------cccccCcCHHHHHHHHHHHhccceEcchhhcccccCHHHHH-h
Confidence 33344444444456789999999998532 11112233466666666654332 24331 1222211 1
Q ss_pred HhcCCCcchhhcc
Q 024782 171 MVQWPNLEVEATK 183 (262)
Q Consensus 171 m~~WP~LE~ea~k 183 (262)
-.+||.++..--|
T Consensus 176 a~GWPSl~slRGK 188 (339)
T 3h4x_A 176 AGGWPSRADLAGK 188 (339)
T ss_dssp HHCCCBTGGGTTC
T ss_pred cCCCCChHHhCCC
Confidence 2789999987643
No 54
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=25.69 E-value=20 Score=24.34 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=23.4
Q ss_pred hhCCCCCCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 024782 131 LLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (262)
Q Consensus 131 ~lGIED~~g~srddla~AL~eV~eGriP~dr~AL~~L~eEm 171 (262)
.+.......+|.+|+..+|..+..+..+-...-++.+.+++
T Consensus 50 ~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 90 (109)
T 1bu3_A 50 VIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAG 90 (109)
T ss_dssp HHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHHHHHHHHH
T ss_pred HHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHHHHHHHHh
Confidence 34444344489999999998885322233333445454443
No 55
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=25.27 E-value=15 Score=26.97 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred CCccccccccc
Q 024782 20 DNQINQHHPLF 30 (262)
Q Consensus 20 ~~~~~~hh~l~ 30 (262)
++.+||||+|.
T Consensus 2 ~~~~~~~~~li 12 (67)
T 1s4x_A 2 SSHHHHHHSSG 12 (67)
T ss_dssp -----------
T ss_pred CcccchhhhHH
Confidence 45566677663
No 56
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=25.25 E-value=1.3e+02 Score=24.90 Aligned_cols=82 Identities=13% Similarity=0.151 Sum_probs=49.6
Q ss_pred CChHhHHH-HHHH-----HHHHHHHHhhccccccceEEEEEecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhhcCCC-
Q 024782 85 ATPEDLEN-IAQV-----KRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKV- 157 (262)
Q Consensus 85 ~~p~dl~~-v~eI-----k~vL~lLk~~RDMsFnEVKLTi~IEDPR~~Errr~lGIED~~g~srddla~AL~eV~eGri- 157 (262)
.+|+-|.. +.+. -+.|+.|++++++|-.|+ + +.+|| || .++..++.|+.
T Consensus 74 iaPd~LY~~~~~~~~~~s~~~lk~lR~~~glTQ~el-----------A---~~LGv------sr----~tis~yE~G~r~ 129 (170)
T 2auw_A 74 FGRDNVYAWAKEQAGEVSHEMFGDWMHRNNLSLTTA-----------A---EALGI------SR----RMVSYYRTAHKI 129 (170)
T ss_dssp BCHHHHHHHHHHHTTCCCHHHHHHHHHHTTCCHHHH-----------H---HHHTS------CH----HHHHHHHTTSSC
T ss_pred CCHHHHHHhhhhhccCCCcHHHHHHHHHcCCCHHHH-----------H---HHhCC------CH----HHHHHHHcCCCC
Confidence 66666633 2222 134788889999888776 1 35665 43 46677888976
Q ss_pred CchHHHHHHHHHHHhcCCCcchhhcccCCChhhhHhh
Q 024782 158 PKNRVALRMLAEEMVQWPNLEVEATKQKPSKSLYAKV 194 (262)
Q Consensus 158 P~dr~AL~~L~eEm~~WP~LE~ea~k~kPskS~YAka 194 (262)
|.--..|+|++-|-.+=+. .-.|++.|.+ |||-
T Consensus 130 iP~~~~lac~~~~~~~~~~--~~~~~~~~~~--~~~~ 162 (170)
T 2auw_A 130 IPRTIWLACLGWEATRPET--KTLPRTLPAA--YAKG 162 (170)
T ss_dssp CCHHHHHHHHHHHHTCSCC--SSCCSSCC--------
T ss_pred CCHHHHHHHHHHHhhcccc--cCCcccChHH--Hhcc
Confidence 5666789999977666543 2356788866 8883
No 57
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=25.23 E-value=16 Score=28.40 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=23.5
Q ss_pred HhhCCCCCCCCChHHHHHHHHHhhc--CCCCchHHHHHHHHHHH
Q 024782 130 RLLGIEDSNAPTRDDLAEALEQVNE--GKVPKNRVALRMLAEEM 171 (262)
Q Consensus 130 r~lGIED~~g~srddla~AL~eV~e--GriP~dr~AL~~L~eEm 171 (262)
+.+. ...--+|++|+..+|..+.. |.-+.+ ..++.+.+++
T Consensus 83 ~~fD-d~~G~I~~~El~~~l~~l~~~~G~~~~~-~~~~~l~~~~ 124 (174)
T 2i7a_A 83 QKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISR-ELLHLVTLRY 124 (174)
T ss_dssp HHHC-SBTTBEEGGGHHHHHHTCGGGTTCCCCH-HHHHHHHHHH
T ss_pred HHhc-CCCCcCCHHHHHHHHHHhHhccCCCCCH-HHHHHHHHHH
Confidence 4566 33333899999998887622 443433 3455555554
No 58
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica}
Probab=25.10 E-value=15 Score=30.71 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCcccccccc
Q 024782 19 GDNQINQHHPL 29 (262)
Q Consensus 19 ~~~~~~~hh~l 29 (262)
++++|||||+.
T Consensus 2 ~~~~~~~~~~~ 12 (255)
T 2vh2_A 2 GSSHHHHHHSS 12 (255)
T ss_dssp -----------
T ss_pred Cccccccccch
Confidence 34566667764
No 59
>4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A
Probab=25.04 E-value=15 Score=32.77 Aligned_cols=8 Identities=25% Similarity=0.488 Sum_probs=0.0
Q ss_pred cccccccc
Q 024782 22 QINQHHPL 29 (262)
Q Consensus 22 ~~~~hh~l 29 (262)
+||||||.
T Consensus 2 hhhhhhss 9 (421)
T 4hnl_A 2 HHHHHHSS 9 (421)
T ss_dssp --------
T ss_pred CcccCCCc
Confidence 47778875
No 60
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=24.99 E-value=15 Score=30.49 Aligned_cols=15 Identities=20% Similarity=0.301 Sum_probs=0.0
Q ss_pred CCCcccccccccccc
Q 024782 19 GDNQINQHHPLFAAT 33 (262)
Q Consensus 19 ~~~~~~~hh~l~~~~ 33 (262)
++++|||||+.-++.
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (336)
T 1p5q_A 2 GSSHHHHHHSSGLVP 16 (336)
T ss_dssp ---------------
T ss_pred CCcccccccccCCcc
Confidence 456677788776653
No 61
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial polysaccharide CO-polymerase, metal transport, biosynthetic protein; 2.70A {Escherichia coli} SCOP: d.58.60.1 PDB: 3b8n_A 4e2l_A
Probab=24.92 E-value=15 Score=32.01 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=8.3
Q ss_pred eEEEEEecCcHHHH
Q 024782 114 VKLTIMIEDPREVE 127 (262)
Q Consensus 114 VKLTi~IEDPR~~E 127 (262)
.+|+..=++|-+.-
T Consensus 121 ~~lsf~a~t~~~A~ 134 (280)
T 3b8m_A 121 WTLSFTAPTSEEAQ 134 (280)
T ss_dssp EEEEEEESSHHHHH
T ss_pred eEEEEEeCCHHHHH
Confidence 46666666665543
No 62
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=24.86 E-value=44 Score=28.34 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=25.4
Q ss_pred ceEEEEEecCcHHHHHHH-hhCCCCCCCC--ChHHHHHHH
Q 024782 113 EVKLTIMIEDPREVERRR-LLGIEDSNAP--TRDDLAEAL 149 (262)
Q Consensus 113 EVKLTi~IEDPR~~Errr-~lGIED~~g~--srddla~AL 149 (262)
++++.+|||.|..+++=. +...+--|++ -+.||...|
T Consensus 145 ~~~v~~~IEt~~av~~~~eIa~~~gvd~l~iG~~DL~~~l 184 (267)
T 2vws_A 145 SLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASL 184 (267)
T ss_dssp HCEEEEECCSHHHHHTHHHHHTSTTCCEEEECHHHHHHHT
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCCCCEEEEChHHHHHHh
Confidence 589999999999998733 2333323443 378888775
No 63
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=24.85 E-value=15 Score=27.98 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCcccccccc
Q 024782 19 GDNQINQHHPL 29 (262)
Q Consensus 19 ~~~~~~~hh~l 29 (262)
+++.|||||+.
T Consensus 2 ~~~~~~~~~~~ 12 (190)
T 2vup_A 2 GSSHHHHHHSS 12 (190)
T ss_dssp -----------
T ss_pred Ccccccccccc
Confidence 34556666764
No 64
>4aqz_A PILQ, type IV pilus biogenesis and competence protein P; transport protein, secretin, type IV PILI, type II secretion; NMR {Neisseria meningitidis}
Probab=24.84 E-value=23 Score=28.73 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=9.4
Q ss_pred CCCcccccccccc
Q 024782 19 GDNQINQHHPLFA 31 (262)
Q Consensus 19 ~~~~~~~hh~l~~ 31 (262)
+++.+||||.+.-
T Consensus 2 ~~~~~~~~~g~vp 14 (138)
T 4aqz_A 2 GSSHHHHHHGLVP 14 (138)
T ss_dssp CSSCCSSCCCCCC
T ss_pred Ccccccccccccc
Confidence 4567788888865
No 65
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=24.74 E-value=18 Score=30.90 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=0.0
Q ss_pred CCCccccccccccc
Q 024782 19 GDNQINQHHPLFAA 32 (262)
Q Consensus 19 ~~~~~~~hh~l~~~ 32 (262)
+++.|||||+.=+|
T Consensus 2 ~~~~~~~~~~~~~~ 15 (412)
T 4fe7_A 2 GSSHHHHHHSSGLV 15 (412)
T ss_dssp --------------
T ss_pred CCcccccccccCcC
Confidence 45667778876554
No 66
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=24.72 E-value=12 Score=32.78 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=24.0
Q ss_pred ceEEEEEecCcHHHHHHHhhCCC-CCCCCChHHHHHHHHHhhcC
Q 024782 113 EVKLTIMIEDPREVERRRLLGIE-DSNAPTRDDLAEALEQVNEG 155 (262)
Q Consensus 113 EVKLTi~IEDPR~~Errr~lGIE-D~~g~srddla~AL~eV~eG 155 (262)
+++++|.+.. +. +.+=|. +-.|.|++|+..+|.-+..-
T Consensus 95 ~~~I~I~~d~----~~-~~I~I~DnG~GMt~edl~~~l~~ia~S 133 (256)
T 3o0i_A 95 ELHINLIPNK----QD-RTLTIVDTGIGMTKADLINNLGTIAKS 133 (256)
T ss_dssp CCCEEEEEET----TT-TEEEEEECSCCCCHHHHHTHHHHHHHH
T ss_pred ceEEEEEEcC----Cc-eEEEEecCCCCcCHHHHHHHHHhhccc
Confidence 4555555532 23 344444 56789999999999766543
No 67
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=24.49 E-value=16 Score=28.16 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCcccccccc
Q 024782 19 GDNQINQHHPL 29 (262)
Q Consensus 19 ~~~~~~~hh~l 29 (262)
+++.+||||+.
T Consensus 2 ~~~~~~~~~~~ 12 (214)
T 2guh_A 2 GSSHHHHHHSS 12 (214)
T ss_dssp -----------
T ss_pred CCccccccccc
Confidence 34566667765
No 68
>2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate binding module, toxin, secreted, virulence, hydrolase, glycosidase; HET: MSE BTB; 1.45A {Clostridium perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A*
Probab=24.35 E-value=15 Score=29.92 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=4.6
Q ss_pred CCCcccccccccc-----cchhhhccchh
Q 024782 19 GDNQINQHHPLFA-----ATSWRASKLCL 42 (262)
Q Consensus 19 ~~~~~~~hh~l~~-----~~~~~~~~~~~ 42 (262)
+++.+||||+.-+ .++|+++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~assi~s 30 (192)
T 2w1s_A 2 GSSHHHHHHSSGLVPRGSHMASNPSLIRS 30 (192)
T ss_dssp ----------------------CCEEEEC
T ss_pred CcccccccccccccccCccccccceEEec
Confidence 3455666776433 37787777653
No 69
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=24.00 E-value=18 Score=27.64 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=1.7
Q ss_pred CCCccccccccccc
Q 024782 19 GDNQINQHHPLFAA 32 (262)
Q Consensus 19 ~~~~~~~hh~l~~~ 32 (262)
+++.|||||+.+.+
T Consensus 2 ~~~~~~~~~~~~~~ 15 (230)
T 2iai_A 2 GSSHHHHHHSSGRE 15 (230)
T ss_dssp -----------CCC
T ss_pred CCccccccccchhh
Confidence 45567777777654
No 70
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=23.96 E-value=16 Score=27.57 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=28.0
Q ss_pred ccccccCCCCccccccccccccccchhhhhhccCC-----hHhHHHHHHHHHHHHHHHhh
Q 024782 52 VVALVGKGDTDLRVAQENDLQDQDQEDEEEEEEAT-----PEDLENIAQVKRVLELLRKN 106 (262)
Q Consensus 52 ~~~~~g~e~~~~~v~~~~~~~~~~~~~~~~~~e~~-----p~dl~~v~eIk~vL~lLk~~ 106 (262)
..+.+|+.-+++++.+..... ....-.+-...+. --.--+|......|+-|+++
T Consensus 28 ~~~~~G~~~P~f~l~~~~g~~-~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~ 86 (176)
T 3kh7_A 28 PSALIGKPFPAFDLPSVQDPA-RRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ 86 (176)
T ss_dssp TTTTTTSBCCCCEEEBSSCTT-SEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT
T ss_pred cccccCCcCCCcEecccCCCC-ceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC
Confidence 346789988888877643200 0000111111110 11224688877788888776
No 71
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=23.93 E-value=16 Score=30.51 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=14.5
Q ss_pred hCCCCCCCCChHHHHHHHHHhhc--CCCC
Q 024782 132 LGIEDSNAPTRDDLAEALEQVNE--GKVP 158 (262)
Q Consensus 132 lGIED~~g~srddla~AL~eV~e--GriP 158 (262)
+||+.+. |-||+.+++..+.+ |..|
T Consensus 155 ~Gl~~P~--Twdel~~~~~~l~~~~g~~~ 181 (412)
T 3k01_A 155 AGVEVPG--SVAELKTAAAEITEKTGATG 181 (412)
T ss_dssp HTCCCCS--BHHHHHHHHHHHHHHHSCEE
T ss_pred cCCCCCC--CHHHHHHHHHHHhcccCCCc
Confidence 4665443 67777776666543 4444
No 72
>3q9v_A DNA-binding response regulator; response regulator protein, DNA binding protein; 1.60A {Deinococcus radiodurans}
Probab=23.91 E-value=16 Score=28.03 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=0.0
Q ss_pred CCCcccccccccccchhhhccchhhh
Q 024782 19 GDNQINQHHPLFAATSWRASKLCLCC 44 (262)
Q Consensus 19 ~~~~~~~hh~l~~~~~~~~~~~~~~~ 44 (262)
+++.+||||+.--+-.|..++++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~lrr~~ 27 (133)
T 3q9v_A 2 GSSHHHHHHSSGENLYFEGSHMASMT 27 (133)
T ss_dssp --------------------------
T ss_pred CccccccccccchhhhHHHHHHHHhh
Confidence 45667788887667777777776543
No 73
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=23.64 E-value=68 Score=21.50 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=20.7
Q ss_pred ccCChHhH-HHHHHHHHHHHHHHhhc
Q 024782 83 EEATPEDL-ENIAQVKRVLELLRKNR 107 (262)
Q Consensus 83 ~e~~p~dl-~~v~eIk~vL~lLk~~R 107 (262)
++++|||| +|...+.+-+.++-+.|
T Consensus 10 ~dA~~Eela~Y~~~LrhYiNlvTRqR 35 (36)
T 2bf9_A 10 DDAPVEDLIRFYNDLQQYLNVVTRHR 35 (36)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 35889997 68899999999988776
No 74
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=23.18 E-value=28 Score=34.62 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHhhccccccceEEEEEecCcHHHHHHHhhCCCCCCCCChHHHHHHHHH
Q 024782 89 DLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQ 151 (262)
Q Consensus 89 dl~~v~eIk~vL~lLk~~RDMsFnEVKLTi~IEDPR~~Errr~lGIED~~g~srddla~AL~e 151 (262)
+-.|.++|++.|+-+++..+--|+.+|=.+. +|. ..++.++-.++.--|..
T Consensus 71 ~~~~~~~V~~AL~~~~~Gd~~~Yd~L~~~~~--~~~----------~~~d~~~~~~L~~~L~a 121 (649)
T 3tj1_A 71 AAMYSRFVKSALDDLDKNDSTQIGIIANQVA--LPS----------KNPERINDKNLNILLDI 121 (649)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH--SCT----------TCTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhc--CCC----------cCcCcCCHHHHHHHHHH
Confidence 4467889999999999887778887765554 443 13455555554444433
No 75
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=23.17 E-value=17 Score=30.36 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=10.9
Q ss_pred CCccchhhhhhhcch
Q 024782 230 PSALGYGALYLVTAF 244 (262)
Q Consensus 230 p~~vGygaLYLVSa~ 244 (262)
|--++|..=||.-+.
T Consensus 222 ~~~i~fn~~YL~d~l 236 (276)
T 2zvv_A 222 PVSLSFALRYMNSFT 236 (276)
T ss_dssp CEEEEEEHHHHHHHG
T ss_pred cEEEEEEHHHHHHHh
Confidence 445899988887554
No 76
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=23.11 E-value=17 Score=31.35 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCcccccccc
Q 024782 19 GDNQINQHHPL 29 (262)
Q Consensus 19 ~~~~~~~hh~l 29 (262)
++++|||||+.
T Consensus 2 ~~~~~~~~~~~ 12 (346)
T 2fsj_A 2 GSSHHHHHHSS 12 (346)
T ss_dssp -----------
T ss_pred CCccccccccc
Confidence 34566777764
No 77
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=23.04 E-value=21 Score=30.57 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=11.6
Q ss_pred HhHHHHHHHHHHHHHHHh
Q 024782 88 EDLENIAQVKRVLELLRK 105 (262)
Q Consensus 88 ~dl~~v~eIk~vL~lLk~ 105 (262)
.|.+.+..+.+.|..|++
T Consensus 44 ~~~~~l~~la~~Ia~l~~ 61 (286)
T 3d40_A 44 LDDDAVTRFARNFARLAE 61 (286)
T ss_dssp BCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 455666677777776654
No 78
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=22.61 E-value=21 Score=31.45 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=8.8
Q ss_pred CCCcccccccccccchh--hhccchh-hhcccccCcccccccCCCCc
Q 024782 19 GDNQINQHHPLFAATSW--RASKLCL-CCSRRSSQRVVALVGKGDTD 62 (262)
Q Consensus 19 ~~~~~~~hh~l~~~~~~--~~~~~~~-~~~rr~s~~~~~~~g~e~~~ 62 (262)
++++|||||+.=+|-+- .-..+-+ -..++-.+..|+.||-.-.+
T Consensus 2 ~~~~~~~~~~~~~~y~r~i~L~~~G~~~~q~kL~~~~VlVvGaGGlG 48 (292)
T 3h8v_A 2 GSSHHHHHHSSGLVPRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVG 48 (292)
T ss_dssp ------------------------------CGGGGCEEEEECCSHHH
T ss_pred CcccccccccCCCCchHhhcccccChHHHHHHHhCCeEEEECcCHHH
Confidence 45667778876555211 1112222 11223334566666665433
No 79
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=22.53 E-value=97 Score=31.45 Aligned_cols=84 Identities=20% Similarity=0.230 Sum_probs=49.4
Q ss_pred CChHhHHHHHH-HHHHHHHHHhhccccccceEEEEEecCcHHHHHHHhh---------CCCCC----CCCChHHHHHHHH
Q 024782 85 ATPEDLENIAQ-VKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLL---------GIEDS----NAPTRDDLAEALE 150 (262)
Q Consensus 85 ~~p~dl~~v~e-Ik~vL~lLk~~RDMsFnEVKLTi~IEDPR~~Errr~l---------GIED~----~g~srddla~AL~ 150 (262)
.++++++.|++ |.++.+.+...+...+ .+++-+|||=|+.+=.=..+ |=.|. =|++||+-...|.
T Consensus 734 ~~~~E~~~~~~~v~~~~~~~~~~~g~~~-~~~vG~MiEvPsaal~ad~~a~~~DFfSiGTNDLTQ~tlg~DRd~~~~~~~ 812 (913)
T 2x0s_A 734 GKKEELSLIREEVVKTAEAVITKSGKRV-HYTVGTMIEVPRAAVTADSIAQKADFFSFGTNDLTQMGCGFSRDDAGPFLR 812 (913)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEEECSHHHHHTHHHHGGGCSEEEECTTHHHHHHHTCCGGGCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCC-CCeEEEEEeHHHHHHHHHHHHHHCCEEEECHhHHHHHHHHHhcCCchhhhh
Confidence 57888888875 4566666666665554 47899999999987432221 11111 1667776332232
Q ss_pred H-------hhcCCCCchHHHHHHHHH
Q 024782 151 Q-------VNEGKVPKNRVALRMLAE 169 (262)
Q Consensus 151 e-------V~eGriP~dr~AL~~L~e 169 (262)
. ..+---|-|..|+..|.+
T Consensus 813 ~y~~~~~~~~dp~~~~~~~~v~~li~ 838 (913)
T 2x0s_A 813 HYGNLGIYAQDPFQSIDQEGIGELVR 838 (913)
T ss_dssp HHHHHTSSSSCTTTSCCTTTHHHHHH
T ss_pred hhhhccccccCCCchhHHHHHHHHHH
Confidence 2 123445666666666654
No 80
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=22.30 E-value=19 Score=28.83 Aligned_cols=15 Identities=7% Similarity=0.011 Sum_probs=10.1
Q ss_pred cccccCCCCcccccc
Q 024782 53 VALVGKGDTDLRVAQ 67 (262)
Q Consensus 53 ~~~~g~e~~~~~v~~ 67 (262)
.+.+|+.-+++++.+
T Consensus 26 ~l~~G~~aP~f~l~~ 40 (220)
T 1zye_A 26 APAVTQHAPYFKGTA 40 (220)
T ss_dssp -CCTTSBCCCCEEEE
T ss_pred cccCCCCCCCcEEEe
Confidence 456788878777653
No 81
>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}
Probab=22.16 E-value=28 Score=27.02 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=6.5
Q ss_pred CCCcccccccc
Q 024782 19 GDNQINQHHPL 29 (262)
Q Consensus 19 ~~~~~~~hh~l 29 (262)
+++.+||||+.
T Consensus 2 ~~~~~~~~~~~ 12 (125)
T 2k4z_A 2 GSSHHHHHHSS 12 (125)
T ss_dssp CSSCCSSSSCC
T ss_pred Ccccccccccc
Confidence 34556667764
No 82
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A
Probab=22.11 E-value=1e+02 Score=31.81 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=31.8
Q ss_pred CChHhHHHHHHH-HHHHHHHHhhccccccceEEEEEecCcHHHHH
Q 024782 85 ATPEDLENIAQV-KRVLELLRKNRDMLFSEVKLTIMIEDPREVER 128 (262)
Q Consensus 85 ~~p~dl~~v~eI-k~vL~lLk~~RDMsFnEVKLTi~IEDPR~~Er 128 (262)
.++++++.++++ .++.+-|.+.....+ .+++-+|||=||.+-.
T Consensus 734 ~t~~E~~~~~~~i~~~~~el~~e~g~~~-~~~vG~MiEvPsaal~ 777 (913)
T 1h6z_A 734 GKKEELSLIREEVVKTAEAVITKSGKRV-HYTVGTMIEVPRAAVT 777 (913)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHSCSCC-CCEEEEEECSHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCC-CceEEEEecchHHHHH
Confidence 578888888775 355555665555666 5999999999999654
No 83
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=22.06 E-value=19 Score=28.05 Aligned_cols=19 Identities=21% Similarity=0.252 Sum_probs=12.8
Q ss_pred cCCChhhhHhhh-ccCCChH
Q 024782 184 QKPSKSLYAKVT-DTGIDPE 202 (262)
Q Consensus 184 ~kPskS~YAkat-dTGIdP~ 202 (262)
.||.+..|.++. ..|++|.
T Consensus 130 ~KP~p~~~~~~~~~lgi~~~ 149 (211)
T 2gmw_A 130 RKPHPGMLLSARDYLHIDMA 149 (211)
T ss_dssp STTSCHHHHHHHHHHTBCGG
T ss_pred CCCCHHHHHHHHHHcCCCHH
Confidence 577777787764 4566663
No 84
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=21.96 E-value=19 Score=28.38 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCcccccccc
Q 024782 19 GDNQINQHHPL 29 (262)
Q Consensus 19 ~~~~~~~hh~l 29 (262)
+++.|||||+.
T Consensus 4 ~~~~~~~~~~~ 14 (260)
T 2of7_A 4 GSSHHHHHHSS 14 (260)
T ss_dssp -----------
T ss_pred Ccccccccccc
Confidence 45566777765
No 85
>1p7t_A MSG, malate synthase G; TIM barrel, glyoxylate cycle, acetyl-COA, cysteine-sulfenic lyase; HET: ACO PG4; 1.95A {Escherichia coli str} SCOP: c.1.13.1 PDB: 1y8b_A 1d8c_A* 2jqx_A
Probab=21.92 E-value=1e+02 Score=31.38 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=29.6
Q ss_pred ChHhHHHHHHHHHHHHHHHhhccccccceEEEEEecCcHHHH
Q 024782 86 TPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVE 127 (262)
Q Consensus 86 ~p~dl~~v~eIk~vL~lLk~~RDMsFnEVKLTi~IEDPR~~E 127 (262)
+|+|.+.+.+++..++-. ..+.-+-+|+++|||-+|..-
T Consensus 395 speEV~~~~~lf~~~E~~---lGlp~gTIKi~vLIET~ra~~ 433 (731)
T 1p7t_A 395 GPQEVAFANKLFTRIETM---LGMAPNTLKMGIMDEERRTSL 433 (731)
T ss_dssp SHHHHHHHHHHHHHHHHH---TTCCTTCEEEEEEECSHHHHT
T ss_pred CHHHHHHHHHHHHHHHHh---hCCCCCceEEEEEECCHHHHH
Confidence 788888877777665543 455567899999999999764
No 86
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=21.91 E-value=20 Score=27.51 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=0.5
Q ss_pred CCCcccccccc
Q 024782 19 GDNQINQHHPL 29 (262)
Q Consensus 19 ~~~~~~~hh~l 29 (262)
+++.+||||+.
T Consensus 2 ~~~~~~~~~~~ 12 (133)
T 2y78_A 2 GSSHHHHHHSS 12 (133)
T ss_dssp ----------C
T ss_pred Ccccccccccc
Confidence 34556667765
No 87
>1z9v_A Conserved hypothetical protein MTH0776; solution structure, archaeabacterium, unknown function; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=21.84 E-value=19 Score=29.47 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=3.2
Q ss_pred CCCcccccccccccchhhhccchhhh
Q 024782 19 GDNQINQHHPLFAATSWRASKLCLCC 44 (262)
Q Consensus 19 ~~~~~~~hh~l~~~~~~~~~~~~~~~ 44 (262)
+++.+||||+.=+-. ..|..+||.
T Consensus 2 ~~~~~~~~~~~~~~~--~~~~ms~Ci 25 (121)
T 1z9v_A 2 GSSHHHHHHSSGLVP--RGSHMTFCL 25 (121)
T ss_dssp --------------------CCBCCC
T ss_pred CcccccccccCCccc--CcchHHHHH
Confidence 345566677653322 334555554
No 88
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=21.67 E-value=19 Score=28.69 Aligned_cols=15 Identities=7% Similarity=0.386 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhcCCC
Q 024782 143 DDLAEALEQVNEGKV 157 (262)
Q Consensus 143 ddla~AL~eV~eGri 157 (262)
+++...+..+.+|..
T Consensus 143 ~ei~~l~~a~~~gdl 157 (233)
T 3vol_A 143 QEVSQLVQAAAAGDF 157 (233)
T ss_dssp HHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhCCcc
Confidence 455555566777754
No 89
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=21.66 E-value=88 Score=25.71 Aligned_cols=44 Identities=11% Similarity=0.152 Sum_probs=34.8
Q ss_pred CCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCcchhhc
Q 024782 137 SNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMVQWPNLEVEAT 182 (262)
Q Consensus 137 ~~g~srddla~AL~eV~eGriP~dr~AL~~L~eEm~~WP~LE~ea~ 182 (262)
.+..|.+++++++.++-+. |+-|..++.+++++..-|..+..+.
T Consensus 329 ~~~~~~~~l~~~i~~ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (384)
T 2p6p_A 329 PGEDSTEAIADSCQELQAK--DTYARRAQDLSREISGMPLPATVVT 372 (384)
T ss_dssp TTCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3457899999999987553 6778899999999998887665543
No 90
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=21.57 E-value=20 Score=26.87 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=0.0
Q ss_pred CCCcccccccccc
Q 024782 19 GDNQINQHHPLFA 31 (262)
Q Consensus 19 ~~~~~~~hh~l~~ 31 (262)
+++.+||||+.+-
T Consensus 2 ~~~~~~~~~~~~k 14 (115)
T 2khi_A 2 GSSHHHHHHSSGL 14 (115)
T ss_dssp -------------
T ss_pred Ccccccccccchh
Confidence 4556777777654
No 91
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Probab=21.47 E-value=20 Score=30.11 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCcccccccc
Q 024782 19 GDNQINQHHPL 29 (262)
Q Consensus 19 ~~~~~~~hh~l 29 (262)
++++|||||+.
T Consensus 2 ~~~~~~~~~~~ 12 (330)
T 2jg1_A 2 GSSHHHHHHSS 12 (330)
T ss_dssp -----------
T ss_pred CCccccccccc
Confidence 34566667764
No 92
>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.70A {Bacillus anthracis}
Probab=21.45 E-value=1.1e+02 Score=29.72 Aligned_cols=39 Identities=10% Similarity=0.007 Sum_probs=29.5
Q ss_pred CChHhHHHHHHHHHHHHHHHhhccccccceEEEEEecCcHHH
Q 024782 85 ATPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREV 126 (262)
Q Consensus 85 ~~p~dl~~v~eIk~vL~lLk~~RDMsFnEVKLTi~IEDPR~~ 126 (262)
-+|+|.+.+.+++..++- ...+.-+-+|+++|||-++..
T Consensus 213 es~~Ev~~~~~lf~~~E~---~lGlp~gtIki~vlIET~~a~ 251 (528)
T 3cux_A 213 ESYLEARLWNDVFVFAQK---YIGIPNGTIKATVLLETIHAS 251 (528)
T ss_dssp CSHHHHHHHHHHHHHHHH---HHTCCTTCCEEEEEECSHHHH
T ss_pred CCHHHHHHHHHHHHHHHH---HhCCCCCceEEEEEeCCHHHH
Confidence 378888888777766554 344556789999999999975
No 93
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=21.38 E-value=20 Score=24.37 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=23.3
Q ss_pred hhCCCCCCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 024782 131 LLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (262)
Q Consensus 131 ~lGIED~~g~srddla~AL~eV~eGriP~dr~AL~~L~eEm 171 (262)
.+.-....-+|.+|+..+|..+..+..+-....++.+.+++
T Consensus 50 ~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (109)
T 3fs7_A 50 ILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAG 90 (109)
T ss_dssp HHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred HHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHh
Confidence 44444445588899888888775422333334445554443
No 94
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=21.33 E-value=7.4 Score=30.12 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=18.3
Q ss_pred CChHHHHHH-------HHHhhcCCCCchHHHHHHHHHHH
Q 024782 140 PTRDDLAEA-------LEQVNEGKVPKNRVALRMLAEEM 171 (262)
Q Consensus 140 ~srddla~A-------L~eV~eGriP~dr~AL~~L~eEm 171 (262)
.|..|+|+. +-.+..|+..-+...|..|++-+
T Consensus 82 lTq~elA~~lGis~s~is~~E~G~~~ps~~~l~~la~~l 120 (141)
T 3kxa_A 82 FTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANAL 120 (141)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 466676664 34566676544555555555543
No 95
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Probab=21.33 E-value=20 Score=29.74 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred CCcccccccccc
Q 024782 20 DNQINQHHPLFA 31 (262)
Q Consensus 20 ~~~~~~hh~l~~ 31 (262)
+++|||||+.=+
T Consensus 2 ~~~~~~~~~~~~ 13 (312)
T 2hlz_A 2 SSHHHHHHSSGL 13 (312)
T ss_dssp ------------
T ss_pred CCccccccccCC
Confidence 456677776544
No 96
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=21.15 E-value=20 Score=31.13 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCcccccccc
Q 024782 19 GDNQINQHHPL 29 (262)
Q Consensus 19 ~~~~~~~hh~l 29 (262)
++++||||||.
T Consensus 2 ~~~~~~~~~~~ 12 (295)
T 3gru_A 2 GSSHHHHHHSS 12 (295)
T ss_dssp -----------
T ss_pred CCccccccCcc
Confidence 45667777775
No 97
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=21.07 E-value=56 Score=27.72 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=10.9
Q ss_pred ccccc--cccccchhhhccchhhhcc
Q 024782 23 INQHH--PLFAATSWRASKLCLCCSR 46 (262)
Q Consensus 23 ~~~hh--~l~~~~~~~~~~~~~~~~r 46 (262)
||||| +++++..|....+-.+.-|
T Consensus 3 ~~~~~~~~~~~tlGFd~~~~vral~~ 28 (244)
T 2wte_A 3 HHHHHMKSYFVTMGFNETFLLRLLNE 28 (244)
T ss_dssp -----CCEEEECCCSCCHHHHHHHHH
T ss_pred chhhhhhhheeccCcChHHHHHHHHH
Confidence 34444 5677777865555433333
No 98
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=21.05 E-value=20 Score=27.89 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCcccccccc
Q 024782 19 GDNQINQHHPL 29 (262)
Q Consensus 19 ~~~~~~~hh~l 29 (262)
+++.|||||+.
T Consensus 2 ~~~~~~~~~~~ 12 (232)
T 3dci_A 2 GSSHHHHHHSS 12 (232)
T ss_dssp -----------
T ss_pred Ccccccccccc
Confidence 34566777765
No 99
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=20.95 E-value=21 Score=30.79 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=0.0
Q ss_pred CCCccccccccc
Q 024782 19 GDNQINQHHPLF 30 (262)
Q Consensus 19 ~~~~~~~hh~l~ 30 (262)
++++|||||+.=
T Consensus 2 ~~~~~~~~~~~~ 13 (280)
T 1q1c_A 2 GSSHHHHHHSSG 13 (280)
T ss_dssp ------------
T ss_pred Cccccccccccc
Confidence 345667777653
No 100
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=20.81 E-value=61 Score=21.74 Aligned_cols=25 Identities=32% Similarity=0.692 Sum_probs=20.3
Q ss_pred ccCChHhH-HHHHHHHHHHHHHHhhc
Q 024782 83 EEATPEDL-ENIAQVKRVLELLRKNR 107 (262)
Q Consensus 83 ~e~~p~dl-~~v~eIk~vL~lLk~~R 107 (262)
++++|||| +|-..+.+-+.++-+.|
T Consensus 10 ~dA~pEela~Y~~~Lr~YiNlvTRqR 35 (36)
T 1bba_A 10 DNATPEQMAQYAAELRRYINMLTRPR 35 (36)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 35788887 68889999998887776
No 101
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=20.71 E-value=1e+02 Score=26.64 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhhccccccceEEEEEecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhh
Q 024782 92 NIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVN 153 (262)
Q Consensus 92 ~v~eIk~vL~lLk~~RDMsFnEVKLTi~IEDPR~~Errr~lGIED~~g~srddla~AL~eV~ 153 (262)
.+.||.++|+-|. ..||+|+|. ...||-.=... .+.+++|++-+.|+.-.
T Consensus 126 h~~~~l~~~~~~~-~~~~~~~~~----------I~~RRSiR~F~-~~~V~~e~l~~ileaA~ 175 (322)
T 4eo3_A 126 HVQEVKEALDRLI-EEDLSLNKH----------IEWRRARRALK-KDRVPREELELLIKAAH 175 (322)
T ss_dssp HHHHHHHHHHHHH-HHHTSCCHH----------HHHCCCCCCBC-CCCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhhc-hhhhHHHHH----------HHhhhccCCcC-ccccCHHHHHHHHHHHH
Confidence 6889999999997 479999984 34454333444 46799999988887653
No 102
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=20.68 E-value=21 Score=28.46 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=0.0
Q ss_pred CCCcccccccccc
Q 024782 19 GDNQINQHHPLFA 31 (262)
Q Consensus 19 ~~~~~~~hh~l~~ 31 (262)
+++.|||||+.=+
T Consensus 2 ~~~~~~~~~~~~~ 14 (213)
T 2i81_A 2 GSSHHHHHHSSGL 14 (213)
T ss_dssp -------------
T ss_pred CccccccccccCC
Confidence 3456677776533
No 103
>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu initiative, PSI, midwest center for structural genomics; 1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24
Probab=20.64 E-value=21 Score=29.87 Aligned_cols=11 Identities=9% Similarity=0.401 Sum_probs=6.7
Q ss_pred HHHHHHHHHHh
Q 024782 95 QVKRVLELLRK 105 (262)
Q Consensus 95 eIk~vL~lLk~ 105 (262)
.++++|+.|++
T Consensus 107 ~~~~~l~~l~~ 117 (332)
T 1y8a_A 107 DAEKAMATLQE 117 (332)
T ss_dssp THHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 34566666665
No 104
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=20.53 E-value=55 Score=27.43 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=25.6
Q ss_pred ceEEEEEecCcHHHHHH-HhhCCCCCCCC--ChHHHHHHH
Q 024782 113 EVKLTIMIEDPREVERR-RLLGIEDSNAP--TRDDLAEAL 149 (262)
Q Consensus 113 EVKLTi~IEDPR~~Err-r~lGIED~~g~--srddla~AL 149 (262)
++++.+|||.|..+++= +++..+--|++ -..||...|
T Consensus 145 ~~~v~~~IEt~~av~~~~eIa~~~~vd~l~iG~~DL~~~l 184 (256)
T 1dxe_A 145 NITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAAL 184 (256)
T ss_dssp SCEEEEEECSHHHHHTHHHHHTSTTCCEEEECHHHHHHHT
T ss_pred ccEEEEEECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHh
Confidence 68999999999999873 23333334443 367888776
No 105
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=20.48 E-value=84 Score=21.09 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=20.4
Q ss_pred ccCChHhH-HHHHHHHHHHHHHHhhc
Q 024782 83 EEATPEDL-ENIAQVKRVLELLRKNR 107 (262)
Q Consensus 83 ~e~~p~dl-~~v~eIk~vL~lLk~~R 107 (262)
++++|||| +|...+.+-+.++-+.|
T Consensus 10 ~~a~pEela~Y~~~Lr~YinlvTRqR 35 (37)
T 1f8p_A 10 EDAPAEDLARYYSALRHYINLITRQR 35 (37)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 45788887 68889999999888876
No 106
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=20.42 E-value=21 Score=29.10 Aligned_cols=21 Identities=10% Similarity=0.336 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhccccccceEEEEE
Q 024782 96 VKRVLELLRKNRDMLFSEVKLTIM 119 (262)
Q Consensus 96 Ik~vL~lLk~~RDMsFnEVKLTi~ 119 (262)
|..+|+.|++. -+.+|-+.+.
T Consensus 59 i~~~l~~l~~~---g~~~i~vv~~ 79 (254)
T 1jyk_A 59 IEYQIEFLKEK---GINDIIIIVG 79 (254)
T ss_dssp HHHHHHHHHHT---TCCCEEEEEC
T ss_pred HHHHHHHHHHC---CCCeEEEEeC
Confidence 55667777654 2566655544
No 107
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=20.21 E-value=22 Score=27.28 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCcccccccc
Q 024782 19 GDNQINQHHPL 29 (262)
Q Consensus 19 ~~~~~~~hh~l 29 (262)
+++.|||||+.
T Consensus 2 ~~~~~~~~~~~ 12 (229)
T 3bni_A 2 GSSHHHHHHSS 12 (229)
T ss_dssp -----------
T ss_pred CCccccccccc
Confidence 34556666643
No 108
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=20.20 E-value=22 Score=29.02 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=9.0
Q ss_pred HhhcCCCccchhhcccC
Q 024782 205 AKRLNIDWDSAAEIEDA 221 (262)
Q Consensus 205 akRL~IdWDsAaEIE~~ 221 (262)
++++||+.+...-+-+.
T Consensus 237 ~~~lgi~~~e~i~~GDs 253 (304)
T 3l7y_A 237 LKRWNFTSDHLMAFGDG 253 (304)
T ss_dssp HHHTTCCGGGEEEEECS
T ss_pred HHHhCcCHHHEEEECCC
Confidence 55556665555444443
No 109
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=20.09 E-value=36 Score=29.53 Aligned_cols=20 Identities=35% Similarity=0.331 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 024782 90 LENIAQVKRVLELLRKNRDM 109 (262)
Q Consensus 90 l~~v~eIk~vL~lLk~~RDM 109 (262)
-+|=..|+..|.+|++-..|
T Consensus 57 ~~~Q~~v~~~i~~le~~~~~ 76 (243)
T 3qc1_A 57 RTIQDKVSKGLELLEKAAGM 76 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666778888888776655
Done!