Query 024782
Match_columns 262
No_of_seqs 20 out of 22
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 14:20:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024782.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024782hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lmb3_ a.35.1.2 (3:) lambda C 77.7 3.1 0.00023 28.4 6.2 63 85-171 2-64 (87)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 73.3 0.7 5.1E-05 29.3 1.6 25 237-261 3-27 (34)
3 d1vbga1 c.1.12.2 (A:521-876) P 43.6 14 0.001 31.3 5.2 69 85-155 194-265 (356)
4 d1susa1 c.66.1.1 (A:21-247) Ca 31.3 5.3 0.00038 31.7 0.3 18 228-245 65-82 (227)
5 d1h75a_ c.47.1.1 (A:) Glutared 30.1 18 0.0013 23.2 2.8 36 91-133 12-47 (76)
6 d2f2ab1 a.182.1.2 (B:294-400) 27.2 38 0.0027 23.5 4.4 32 139-172 70-101 (107)
7 d1rwya_ a.39.1.4 (A:) Parvalbu 27.0 8.6 0.00062 26.6 0.7 45 126-171 41-89 (109)
8 d2q0ta1 a.152.1.1 (A:1-257) Hy 23.6 24 0.0017 28.0 3.0 35 138-172 217-251 (257)
9 d1pn3a_ c.87.1.5 (A:) TDP-epi- 22.9 25 0.0018 26.0 2.8 33 136-171 339-371 (391)
10 d1o17a1 a.46.2.1 (A:1-70) Anth 22.7 40 0.0029 21.5 3.5 26 138-163 14-39 (70)
11 d1r7ha_ c.47.1.1 (A:) Glutared 22.6 31 0.0023 21.6 2.9 37 91-134 12-48 (74)
12 d2ppxa1 a.35.1.3 (A:30-91) Unc 21.9 88 0.0064 19.4 5.5 46 123-175 2-54 (62)
13 d1piwa2 c.2.1.1 (A:153-320) Ci 21.6 22 0.0016 25.4 2.1 19 139-157 149-167 (168)
No 1
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}
Probab=77.71 E-value=3.1 Score=28.37 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=50.0
Q ss_pred CChHhHHHHHHHHHHHHHHHhhccccccceEEEEEecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhhcCCCCchHHHH
Q 024782 85 ATPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVAL 164 (262)
Q Consensus 85 ~~p~dl~~v~eIk~vL~lLk~~RDMsFnEVKLTi~IEDPR~~Errr~lGIED~~g~srddla~AL~eV~eGriP~dr~AL 164 (262)
.||+|++.-+.++.+++.+|+.+.||-.|+- +.+||. -.++-.++.|+..-+-..|
T Consensus 2 ~t~~~~~~~~~l~~~i~~~R~~~gltq~~lA--------------~~lgis----------~~~is~~E~g~~~~s~~~l 57 (87)
T d1lmb3_ 2 LTQEQLEDARRLKAIYEKKKNELGLSQESVA--------------DKMGMG----------QSGVGALFNGINALNAYNA 57 (87)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCCHHHHH--------------HHHTSC----------HHHHHHHHTTSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--------------HHhCcc----------HHHHHHHHhccCCCcHHHH
Confidence 5899999999999999999999888866542 356653 2466778899998888888
Q ss_pred HHHHHHH
Q 024782 165 RMLAEEM 171 (262)
Q Consensus 165 ~~L~eEm 171 (262)
..||+=+
T Consensus 58 ~~ia~~l 64 (87)
T d1lmb3_ 58 ALLAKIL 64 (87)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888754
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=73.30 E-value=0.7 Score=29.28 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=21.7
Q ss_pred hhhhhcchhhHHHhHHHHHhhhccC
Q 024782 237 ALYLVTAFPVIIGISVVLILFYNSL 261 (262)
Q Consensus 237 aLYLVSa~PViI~I~vVlILFyNSL 261 (262)
+|+||-.+-=+.+|++|.|.||-|-
T Consensus 3 PLWlv~tv~G~~vi~~vG~FfYGsY 27 (34)
T d2axtj1 3 PLWIVATVAGMGVIVIVGLFFYGAY 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cEEEeeehhhhhhHhheeeeeeeee
Confidence 6788888888999999999999873
No 3
>d1vbga1 c.1.12.2 (A:521-876) Pyruvate phosphate dikinase, C-terminal domain {Maize (Zea mays) [TaxId: 4577]}
Probab=43.58 E-value=14 Score=31.34 Aligned_cols=69 Identities=22% Similarity=0.227 Sum_probs=43.2
Q ss_pred CChHhHHHHHHH-HHHHHHHHhhccccccceEEEEEecCcHHHHHHHhhCCCCCCCCC--hHHHHHHHHHhhcC
Q 024782 85 ATPEDLENIAQV-KRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPT--RDDLAEALEQVNEG 155 (262)
Q Consensus 85 ~~p~dl~~v~eI-k~vL~lLk~~RDMsFnEVKLTi~IEDPR~~Errr~lGIED~~g~s--rddla~AL~eV~eG 155 (262)
.++++++.+.++ .++.+.|+++.... ..+++=||||-|+.+=-=..+ .+--|.+| --||.+-+-.+.++
T Consensus 194 ~~~~E~~~~~~~~~~~~~~~~~~~~~~-~~~~iGiMiEvPsaal~~d~~-~~~~DF~SIGTNDLtQytla~DRd 265 (356)
T d1vbga1 194 GTPQELGHQVTLIRQVAEKVFANVGKT-IGYKVGTMIEIPRAALVADEI-AEQAEFFSFGTNDLTQMTFGYSRD 265 (356)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTCC-CCCEEEEEECSHHHHHTHHHH-TTTCSEEEECHHHHHHHHHTCCTT
T ss_pred hhHHHHHHHHHHHHHhHHHHHHhcccc-cCceeeeeccChHHHHHHHHH-hheEEEEEecchHHHHHHHHhhhh
Confidence 577888777774 34556665554433 368999999999987543222 12234433 56777777666554
No 4
>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=31.26 E-value=5.3 Score=31.69 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=16.4
Q ss_pred CCCCccchhhhhhhcchh
Q 024782 228 EVPSALGYGALYLVTAFP 245 (262)
Q Consensus 228 ~vp~~vGygaLYLVSa~P 245 (262)
++++..||+++|+..|+|
T Consensus 65 EiGT~~GyStl~la~al~ 82 (227)
T d1susa1 65 EIGVYTGYSLLATALAIP 82 (227)
T ss_dssp EECCGGGHHHHHHHHHSC
T ss_pred EecchhhhhHHHHHhhCC
Confidence 478999999999999987
No 5
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=30.09 E-value=18 Score=23.22 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhccccccceEEEEEecCcHHHHHHHhhC
Q 024782 91 ENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLG 133 (262)
Q Consensus 91 ~~v~eIk~vL~lLk~~RDMsFnEVKLTi~IEDPR~~Errr~lG 133 (262)
-+|...|++|+ ++.+.|.|+.++ +||...+.-+.+|
T Consensus 12 ~~C~~ak~~L~----~~~i~y~~~~i~---~~~~~~~~~~~~g 47 (76)
T d1h75a_ 12 VQCHATKRAME----NRGFDFEMINVD---RVPEAAEALRAQG 47 (76)
T ss_dssp HHHHHHHHHHH----HTTCCCEEEETT---TCHHHHHHHHHTT
T ss_pred ccHHHHHHHHH----hcCceeEEEeec---CCHHHHHHHHhcC
Confidence 47888888874 467899998775 7777666544455
No 6
>d2f2ab1 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=27.17 E-value=38 Score=23.52 Aligned_cols=32 Identities=19% Similarity=0.415 Sum_probs=25.5
Q ss_pred CCChHHHHHHHHHhhcCCCCchHHHHHHHHHHHh
Q 024782 139 APTRDDLAEALEQVNEGKVPKNRVALRMLAEEMV 172 (262)
Q Consensus 139 g~srddla~AL~eV~eGriP~dr~AL~~L~eEm~ 172 (262)
.+|.+.+++-+..|.+|+|-.. .| +.+.++|.
T Consensus 70 ~i~~~~la~Li~lv~~g~Is~~-~a-K~vl~~~~ 101 (107)
T d2f2ab1 70 KLTPENLAGMIKLIEDGTMSSK-IA-KKVFPELA 101 (107)
T ss_dssp SCCHHHHHHHHHHHTTSSSCHH-HH-HHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCccHH-HH-HHHHHHHH
Confidence 4679999999999999999654 33 66777775
No 7
>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}
Probab=26.97 E-value=8.6 Score=26.56 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=27.9
Q ss_pred HHHHHhhCCCCCCC---CChHHHHHHHHHhhcC-CCCchHHHHHHHHHHH
Q 024782 126 VERRRLLGIEDSNA---PTRDDLAEALEQVNEG-KVPKNRVALRMLAEEM 171 (262)
Q Consensus 126 ~Errr~lGIED~~g---~srddla~AL~eV~eG-riP~dr~AL~~L~eEm 171 (262)
.+-|+...+=|.+| ++++|+..+|..+..+ +...+.. +..+.+++
T Consensus 41 ~~~~~~F~~~D~d~~G~I~~~El~~~l~~l~~~~~~~~~~e-~~~~~~~~ 89 (109)
T d1rwya_ 41 DDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKE-TKTLMAAG 89 (109)
T ss_dssp HHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHH-HHHHHHHH
T ss_pred HHHHHHhhcccCCCCCcCcHHHHHHHHHHhccccccCCHHH-HHHHHHHh
Confidence 34455666656666 9999999999987654 4344433 44444443
No 8
>d2q0ta1 a.152.1.1 (A:1-257) Hypothetical protein Bxeno_B2006 {Burkholderia xenovorans [TaxId: 36873]}
Probab=23.57 E-value=24 Score=28.03 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=29.8
Q ss_pred CCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHHh
Q 024782 138 NAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMV 172 (262)
Q Consensus 138 ~g~srddla~AL~eV~eGriP~dr~AL~~L~eEm~ 172 (262)
-|.|++|+.++|..+----+|.=..+++.|-++|.
T Consensus 217 ~G~t~eEi~eal~~~~~~G~~~~~~~~~~l~~~l~ 251 (257)
T d2q0ta1 217 YGATAEELMELLEIVSVTGIHGAELGAPLLEAALK 251 (257)
T ss_dssp TTCCHHHHHHHHHHHGGGGGHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 58999999999988666668888899999888875
No 9
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}
Probab=22.89 E-value=25 Score=26.02 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=24.0
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 024782 136 DSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (262)
Q Consensus 136 D~~g~srddla~AL~eV~eGriP~dr~AL~~L~eEm 171 (262)
+...+|.|++++++.+|-+ |.-|...+.+++.+
T Consensus 339 ~~~~~~~~~l~~~i~~~l~---~~~r~~a~~~a~~~ 371 (391)
T d1pn3a_ 339 DGPVPTIDSLSAALDTALA---PEIRARATTVADTI 371 (391)
T ss_dssp CCSSCCHHHHHHHHHHHTS---TTHHHHHHHHGGGS
T ss_pred CcCCCCHHHHHHHHHHHhC---HHHHHHHHHHHHHH
Confidence 4566899999999999874 45566556665554
No 10
>d1o17a1 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=22.70 E-value=40 Score=21.47 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=23.0
Q ss_pred CCCChHHHHHHHHHhhcCCCCchHHH
Q 024782 138 NAPTRDDLAEALEQVNEGKVPKNRVA 163 (262)
Q Consensus 138 ~g~srddla~AL~eV~eGriP~dr~A 163 (262)
...|++|+..+...|-+|+++..-+|
T Consensus 14 ~~Ls~~e~~~~~~~i~~g~~s~~qia 39 (70)
T d1o17a1 14 SDLEINEAEELAKAIIRGEVPEILVS 39 (70)
T ss_dssp CCCCHHHHHHHHHHHHTTCSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHH
Confidence 56899999999999999999988765
No 11
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=22.60 E-value=31 Score=21.59 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhccccccceEEEEEecCcHHHHHHHhhCC
Q 024782 91 ENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGI 134 (262)
Q Consensus 91 ~~v~eIk~vL~lLk~~RDMsFnEVKLTi~IEDPR~~Errr~lGI 134 (262)
-||...|++|+ ++.+.|.|+.+. +||...+--+.+|.
T Consensus 12 ~~C~~ak~~L~----~~~i~~~~~~i~---~~~~~~~~~~~~g~ 48 (74)
T d1r7ha_ 12 VQCTATKKALD----RAGLAYNTVDIS---LDDEARDYVMALGY 48 (74)
T ss_dssp HHHHHHHHHHH----HTTCCCEEEETT---TCHHHHHHHHHTTC
T ss_pred hhHHHHHHHHH----HcCCceEEEEcc---CCHHHHHHHHHhCC
Confidence 47888888775 568899888764 67766655555554
No 12
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=21.86 E-value=88 Score=19.42 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=30.3
Q ss_pred cHHHHHHHhhCCCCCCCCChHHHHHHH-------HHhhcCCCCchHHHHHHHHHHHhcCC
Q 024782 123 PREVERRRLLGIEDSNAPTRDDLAEAL-------EQVNEGKVPKNRVALRMLAEEMVQWP 175 (262)
Q Consensus 123 PR~~Errr~lGIED~~g~srddla~AL-------~eV~eGriP~dr~AL~~L~eEm~~WP 175 (262)
||.++-|+.+| .|.+|+|+.| ...+.|+..-+..++..| .-+...|
T Consensus 2 p~ik~~R~~~g------ltQ~elA~~lGvs~~tvs~~E~G~~~P~~~~~~ll-~~l~~~P 54 (62)
T d2ppxa1 2 PRIKIIRRALK------LTQEEFSARYHIPLGTLRDWEQGRSEPDQPARAYL-KIIAVDP 54 (62)
T ss_dssp CHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHH-HHHHHCH
T ss_pred hHHHHHHHHcC------CCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHH-HHHhcCH
Confidence 67777777765 4888888754 567788776666655444 4454444
No 13
>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.55 E-value=22 Score=25.36 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=17.1
Q ss_pred CCChHHHHHHHHHhhcCCC
Q 024782 139 APTRDDLAEALEQVNEGKV 157 (262)
Q Consensus 139 g~srddla~AL~eV~eGri 157 (262)
.-|++|+.++|+.|.+|||
T Consensus 149 ~g~~~~~~e~l~li~~gkI 167 (168)
T d1piwa2 149 LGSIKELNQLLKLVSEKDI 167 (168)
T ss_dssp CCCHHHHHHHHHHHHHTTC
T ss_pred eCCHHHHHHHHHHHHhCCC
Confidence 3489999999999999997
Done!