Query 024784
Match_columns 262
No_of_seqs 241 out of 2126
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:23:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02950 TxlA TRX-like protein 99.9 1.8E-26 3.8E-31 187.1 15.3 140 121-261 2-142 (142)
2 KOG0910 Thioredoxin-like prote 99.8 7.1E-21 1.5E-25 152.9 10.7 93 135-230 57-149 (150)
3 PHA02278 thioredoxin-like prot 99.8 7E-20 1.5E-24 140.6 12.0 93 131-224 6-100 (103)
4 PRK15412 thiol:disulfide inter 99.8 1.9E-19 4.1E-24 152.0 15.7 110 119-232 47-179 (185)
5 cd02951 SoxW SoxW family; SoxW 99.8 4E-19 8.7E-24 140.2 12.3 101 131-231 5-121 (125)
6 PRK03147 thiol-disulfide oxido 99.8 1.5E-18 3.2E-23 143.8 16.0 109 118-228 42-171 (173)
7 PRK10996 thioredoxin 2; Provis 99.8 5.9E-19 1.3E-23 142.5 12.7 103 124-229 37-139 (139)
8 cd02954 DIM1 Dim1 family; Dim1 99.8 7.8E-19 1.7E-23 136.6 12.8 89 138-229 13-111 (114)
9 cd02948 TRX_NDPK TRX domain, T 99.8 5.6E-19 1.2E-23 135.0 11.6 94 130-228 8-102 (102)
10 cd02953 DsbDgamma DsbD gamma f 99.8 5E-19 1.1E-23 135.2 10.0 96 131-226 3-104 (104)
11 cd02985 TRX_CDSP32 TRX family, 99.8 1.4E-18 3E-23 133.1 12.3 87 138-227 14-101 (103)
12 cd02956 ybbN ybbN protein fami 99.8 1.4E-18 3E-23 130.6 12.0 86 138-226 11-96 (96)
13 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1.5E-18 3.3E-23 131.8 10.4 92 130-224 9-100 (101)
14 PF00085 Thioredoxin: Thioredo 99.8 6.4E-18 1.4E-22 127.5 13.8 97 129-228 6-103 (103)
15 cd02963 TRX_DnaJ TRX domain, D 99.8 1.7E-18 3.7E-23 134.4 10.6 88 138-228 23-111 (111)
16 PRK09381 trxA thioredoxin; Pro 99.8 7E-18 1.5E-22 129.8 12.9 91 136-229 18-108 (109)
17 cd03006 PDI_a_EFP1_N PDIa fami 99.8 2.9E-18 6.3E-23 133.7 10.6 94 129-225 16-113 (113)
18 KOG0907 Thioredoxin [Posttrans 99.8 3.1E-18 6.7E-23 131.9 10.5 87 137-228 19-105 (106)
19 cd02999 PDI_a_ERp44_like PDIa 99.8 2.8E-18 6E-23 130.9 10.2 85 137-225 16-100 (100)
20 PRK14018 trifunctional thiored 99.8 5.9E-18 1.3E-22 162.0 14.8 107 118-228 39-172 (521)
21 TIGR00385 dsbE periplasmic pro 99.8 1.2E-17 2.7E-22 139.3 14.9 110 118-230 41-172 (173)
22 TIGR02738 TrbB type-F conjugat 99.8 1.4E-17 3.1E-22 136.5 14.2 91 137-229 48-153 (153)
23 PTZ00443 Thioredoxin domain-co 99.8 1.2E-17 2.5E-22 144.8 13.7 103 128-233 36-143 (224)
24 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 1.1E-17 2.4E-22 127.5 10.6 93 131-225 10-104 (104)
25 cd03065 PDI_b_Calsequestrin_N 99.7 1.3E-17 2.8E-22 131.2 11.1 98 129-230 16-120 (120)
26 cd02949 TRX_NTR TRX domain, no 99.7 2.1E-17 4.4E-22 124.9 11.5 89 135-226 9-97 (97)
27 PLN00410 U5 snRNP protein, DIM 99.7 1.9E-17 4.1E-22 133.6 11.8 99 131-232 13-123 (142)
28 cd02997 PDI_a_PDIR PDIa family 99.7 2.1E-17 4.5E-22 125.3 11.5 94 131-225 9-104 (104)
29 COG3118 Thioredoxin domain-con 99.7 8.5E-18 1.8E-22 148.5 10.3 92 137-231 41-132 (304)
30 cd02965 HyaE HyaE family; HyaE 99.7 3.9E-17 8.3E-22 126.4 11.4 93 128-223 16-110 (111)
31 TIGR02661 MauD methylamine deh 99.7 7.2E-17 1.6E-21 136.7 14.2 117 118-237 53-187 (189)
32 cd02962 TMX2 TMX2 family; comp 99.7 5.6E-17 1.2E-21 132.7 12.8 83 131-216 37-128 (152)
33 cd03002 PDI_a_MPD1_like PDI fa 99.7 4E-17 8.7E-22 125.2 11.1 95 131-225 9-108 (109)
34 cd03010 TlpA_like_DsbE TlpA-li 99.7 5.4E-17 1.2E-21 128.1 11.9 102 118-221 4-126 (127)
35 cd03005 PDI_a_ERp46 PDIa famil 99.7 4.2E-17 9.1E-22 123.3 10.7 91 131-225 9-102 (102)
36 PRK13728 conjugal transfer pro 99.7 1.4E-16 3.1E-21 133.3 14.7 102 122-231 58-173 (181)
37 cd02996 PDI_a_ERp44 PDIa famil 99.7 4.4E-17 9.6E-22 125.3 10.2 93 130-225 9-108 (108)
38 cd02994 PDI_a_TMX PDIa family, 99.7 9E-17 2E-21 121.8 11.6 92 130-227 9-101 (101)
39 TIGR01126 pdi_dom protein disu 99.7 9.2E-17 2E-21 121.1 11.3 95 131-228 5-101 (102)
40 PLN02399 phospholipid hydroper 99.7 8.8E-17 1.9E-21 140.3 12.3 112 118-231 80-236 (236)
41 TIGR01068 thioredoxin thioredo 99.7 1.5E-16 3.2E-21 119.4 11.9 89 138-229 13-101 (101)
42 PTZ00056 glutathione peroxidas 99.7 9.1E-17 2E-21 137.2 11.6 113 118-232 20-181 (199)
43 PF13098 Thioredoxin_2: Thiore 99.7 8E-17 1.7E-21 124.2 8.3 89 137-225 3-112 (112)
44 cd02984 TRX_PICOT TRX domain, 99.7 2.7E-16 5.8E-21 118.0 11.0 90 132-225 5-96 (97)
45 PLN02412 probable glutathione 99.7 3.9E-16 8.3E-21 129.8 12.7 112 118-231 10-166 (167)
46 cd03000 PDI_a_TMX3 PDIa family 99.7 3.3E-16 7.2E-21 119.7 11.4 92 132-228 9-103 (104)
47 cd03009 TryX_like_TryX_NRX Try 99.7 2.7E-16 5.8E-21 124.9 10.4 88 122-211 3-115 (131)
48 PF08534 Redoxin: Redoxin; In 99.7 2.8E-16 6.1E-21 126.8 10.6 98 118-217 7-136 (146)
49 cd03008 TryX_like_RdCVF Trypar 99.7 3E-16 6.5E-21 127.5 10.3 75 137-211 23-128 (146)
50 PTZ00051 thioredoxin; Provisio 99.7 4.6E-16 9.9E-21 117.1 10.4 87 131-222 10-96 (98)
51 cd02959 ERp19 Endoplasmic reti 99.7 9.3E-17 2E-21 126.0 6.7 99 131-230 11-114 (117)
52 cd02967 mauD Methylamine utili 99.7 2.8E-16 6.1E-21 121.4 9.3 92 119-211 2-111 (114)
53 cd02986 DLP Dim1 family, Dim1- 99.7 9.2E-16 2E-20 118.8 11.9 91 138-231 13-113 (114)
54 cd02975 PfPDO_like_N Pyrococcu 99.7 6.2E-16 1.3E-20 120.5 11.0 95 133-231 16-112 (113)
55 cd02961 PDI_a_family Protein D 99.7 4.9E-16 1.1E-20 115.8 9.7 94 130-225 6-101 (101)
56 cd02989 Phd_like_TxnDC9 Phosdu 99.7 6.1E-16 1.3E-20 120.5 10.5 83 130-216 13-95 (113)
57 TIGR01295 PedC_BrcD bacterioci 99.7 1.1E-15 2.4E-20 120.7 12.1 92 131-225 15-120 (122)
58 cd00340 GSH_Peroxidase Glutath 99.7 5.6E-16 1.2E-20 126.5 10.4 104 118-224 3-151 (152)
59 cd03001 PDI_a_P5 PDIa family, 99.7 1.3E-15 2.9E-20 115.2 11.4 93 131-225 9-102 (103)
60 cd02993 PDI_a_APS_reductase PD 99.7 1.1E-15 2.4E-20 118.0 10.9 88 137-225 19-109 (109)
61 TIGR02540 gpx7 putative glutat 99.6 1.3E-15 2.7E-20 124.6 11.4 109 119-229 4-153 (153)
62 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 1.6E-15 3.5E-20 118.6 11.3 99 119-224 2-121 (123)
63 cd02998 PDI_a_ERp38 PDIa famil 99.6 1.3E-15 2.8E-20 115.3 10.4 94 131-225 9-105 (105)
64 cd02957 Phd_like Phosducin (Ph 99.6 1.7E-15 3.7E-20 117.8 11.1 73 139-216 24-96 (113)
65 TIGR01626 ytfJ_HI0045 conserve 99.6 2.6E-15 5.6E-20 126.3 12.9 87 137-226 57-177 (184)
66 PF13905 Thioredoxin_8: Thiore 99.6 1.3E-15 2.9E-20 114.0 9.5 70 139-208 1-95 (95)
67 cd02947 TRX_family TRX family; 99.6 3.7E-15 8.1E-20 108.8 11.7 90 132-225 3-92 (93)
68 cd02964 TryX_like_family Trypa 99.6 1.3E-15 2.8E-20 121.4 9.9 82 129-212 9-116 (132)
69 cd03012 TlpA_like_DipZ_like Tl 99.6 2.1E-15 4.4E-20 119.2 10.9 90 124-215 9-125 (126)
70 PTZ00102 disulphide isomerase; 99.6 6.2E-15 1.3E-19 140.6 15.5 101 128-232 38-141 (477)
71 cd02969 PRX_like1 Peroxiredoxi 99.6 9.9E-15 2.1E-19 121.2 14.3 114 118-232 5-155 (171)
72 PLN02919 haloacid dehalogenase 99.6 5E-15 1.1E-19 153.4 13.8 105 125-230 407-537 (1057)
73 cd02966 TlpA_like_family TlpA- 99.6 7.5E-15 1.6E-19 111.3 10.3 93 120-214 2-116 (116)
74 cd02955 SSP411 TRX domain, SSP 99.6 9.1E-15 2E-19 115.8 10.2 97 131-229 7-119 (124)
75 PTZ00256 glutathione peroxidas 99.6 1.5E-14 3.2E-19 121.9 12.1 112 118-231 21-183 (183)
76 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 1.1E-14 2.3E-19 110.2 10.1 91 131-225 9-104 (104)
77 TIGR02740 TraF-like TraF-like 99.6 2.3E-14 5.1E-19 127.9 12.9 94 138-233 165-268 (271)
78 cd03017 PRX_BCP Peroxiredoxin 99.6 1.6E-14 3.5E-19 115.3 10.3 106 118-225 4-139 (140)
79 cd02958 UAS UAS family; UAS is 99.6 3.6E-14 7.8E-19 110.4 11.8 100 132-231 10-113 (114)
80 PRK00293 dipZ thiol:disulfide 99.6 1.8E-14 4E-19 140.7 11.9 93 136-229 471-570 (571)
81 TIGR00411 redox_disulf_1 small 99.6 4.6E-14 1E-18 102.5 10.8 81 142-229 2-82 (82)
82 cd02987 Phd_like_Phd Phosducin 99.5 5.3E-14 1.2E-18 117.8 10.9 72 140-216 84-155 (175)
83 TIGR00424 APS_reduc 5'-adenyly 99.5 7.2E-14 1.6E-18 132.5 11.8 98 130-228 359-462 (463)
84 PRK09437 bcp thioredoxin-depen 99.5 1.2E-13 2.6E-18 112.6 11.5 109 118-228 11-152 (154)
85 PF00578 AhpC-TSA: AhpC/TSA fa 99.5 5.1E-14 1.1E-18 109.9 8.3 92 118-211 6-124 (124)
86 PTZ00102 disulphide isomerase; 99.5 1.1E-13 2.3E-18 132.1 11.7 100 130-231 365-467 (477)
87 cd02970 PRX_like2 Peroxiredoxi 99.5 1.4E-13 3.1E-18 110.6 10.5 97 118-214 3-148 (149)
88 cd02952 TRP14_like Human TRX-r 99.5 1.1E-13 2.4E-18 108.7 8.8 70 138-207 20-102 (119)
89 TIGR01130 ER_PDI_fam protein d 99.5 1.8E-13 3.9E-18 129.4 11.7 98 130-230 9-110 (462)
90 cd02992 PDI_a_QSOX PDIa family 99.5 1.7E-13 3.6E-18 106.9 8.9 76 131-207 10-89 (114)
91 PTZ00062 glutaredoxin; Provisi 99.5 2.8E-13 6E-18 115.9 10.7 87 132-231 9-96 (204)
92 cd02988 Phd_like_VIAF Phosduci 99.5 3.4E-13 7.4E-18 114.5 10.6 81 139-226 102-189 (192)
93 cd03014 PRX_Atyp2cys Peroxired 99.5 3.3E-13 7.1E-18 108.5 10.0 105 118-225 7-141 (143)
94 cd02982 PDI_b'_family Protein 99.5 2.8E-13 6E-18 102.7 8.8 89 139-229 12-103 (103)
95 PRK00522 tpx lipid hydroperoxi 99.5 5.5E-13 1.2E-17 110.7 11.1 107 119-228 26-165 (167)
96 cd03015 PRX_Typ2cys Peroxiredo 99.5 7.8E-13 1.7E-17 110.2 11.6 110 118-229 6-157 (173)
97 KOG0908 Thioredoxin-like prote 99.4 4.1E-13 8.8E-18 115.7 9.7 93 137-234 19-111 (288)
98 cd02960 AGR Anterior Gradient 99.4 4.2E-13 9.1E-18 106.7 8.4 86 129-217 13-101 (130)
99 PLN02309 5'-adenylylsulfate re 99.4 8.3E-13 1.8E-17 125.2 11.8 91 137-228 363-456 (457)
100 TIGR02187 GlrX_arch Glutaredox 99.4 1E-12 2.3E-17 113.3 11.5 90 139-230 19-112 (215)
101 COG2143 Thioredoxin-related pr 99.4 2.3E-12 5.1E-17 103.8 12.4 101 132-232 35-152 (182)
102 TIGR03137 AhpC peroxiredoxin. 99.4 1.6E-12 3.4E-17 110.0 11.3 108 118-227 9-154 (187)
103 cd03018 PRX_AhpE_like Peroxire 99.4 2.4E-12 5.2E-17 103.9 11.7 97 118-216 8-134 (149)
104 KOG0190 Protein disulfide isom 99.4 5.9E-13 1.3E-17 126.0 9.3 101 128-231 31-134 (493)
105 smart00594 UAS UAS domain. 99.4 1.8E-12 3.8E-17 102.3 10.5 94 132-225 20-121 (122)
106 cd03007 PDI_a_ERp29_N PDIa fam 99.4 1.3E-12 2.8E-17 102.0 9.3 96 128-228 7-115 (116)
107 cd02971 PRX_family Peroxiredox 99.4 1.8E-12 3.9E-17 103.4 10.4 98 118-217 3-131 (140)
108 TIGR00412 redox_disulf_2 small 99.4 1.8E-12 3.9E-17 93.9 8.5 73 143-225 2-75 (76)
109 PRK13190 putative peroxiredoxi 99.4 5.1E-12 1.1E-16 108.2 11.8 110 118-230 9-155 (202)
110 cd02968 SCO SCO (an acronym fo 99.4 3.4E-12 7.4E-17 102.1 9.0 95 118-214 3-142 (142)
111 PHA02125 thioredoxin-like prot 99.3 9.2E-12 2E-16 89.8 9.5 70 143-224 2-72 (75)
112 PRK10606 btuE putative glutath 99.3 6.2E-12 1.3E-16 106.0 9.8 109 118-229 6-181 (183)
113 TIGR01130 ER_PDI_fam protein d 99.3 1.3E-11 2.7E-16 116.8 11.1 99 130-232 354-457 (462)
114 TIGR02187 GlrX_arch Glutaredox 99.3 3.4E-11 7.3E-16 103.9 11.4 82 139-227 132-214 (215)
115 cd03016 PRX_1cys Peroxiredoxin 99.3 4.5E-11 9.8E-16 102.4 12.0 124 118-243 6-171 (203)
116 COG4232 Thiol:disulfide interc 99.3 2.9E-11 6.4E-16 115.7 11.3 98 131-229 464-568 (569)
117 KOG4277 Uncharacterized conser 99.3 8.7E-12 1.9E-16 110.3 6.6 92 138-231 42-134 (468)
118 PRK10382 alkyl hydroperoxide r 99.3 6.1E-11 1.3E-15 100.4 11.4 94 137-230 29-157 (187)
119 KOG2501 Thioredoxin, nucleored 99.2 3.3E-11 7.3E-16 97.9 8.6 92 119-211 14-131 (157)
120 PRK15000 peroxidase; Provision 99.2 9E-11 2E-15 100.4 11.7 93 138-230 33-163 (200)
121 PRK13189 peroxiredoxin; Provis 99.2 1E-10 2.2E-15 101.7 11.6 111 118-230 16-164 (222)
122 PRK13599 putative peroxiredoxi 99.2 1E-10 2.2E-15 101.1 11.3 111 118-230 9-157 (215)
123 cd03026 AhpF_NTD_C TRX-GRX-lik 99.2 1.5E-10 3.2E-15 86.5 9.6 76 138-221 11-86 (89)
124 cd02973 TRX_GRX_like Thioredox 99.2 1.1E-10 2.4E-15 81.7 8.4 63 142-210 2-64 (67)
125 KOG0912 Thiol-disulfide isomer 99.2 6.2E-11 1.4E-15 105.0 8.4 101 130-231 4-108 (375)
126 PTZ00137 2-Cys peroxiredoxin; 99.2 2.2E-10 4.8E-15 101.5 11.8 111 119-230 76-226 (261)
127 KOG0190 Protein disulfide isom 99.2 4.3E-11 9.2E-16 113.5 7.0 96 131-230 375-474 (493)
128 PF13899 Thioredoxin_7: Thiore 99.2 8.5E-11 1.8E-15 86.0 7.1 71 131-204 9-82 (82)
129 PRK13191 putative peroxiredoxi 99.2 3.7E-10 8.1E-15 97.6 11.7 111 118-230 14-162 (215)
130 PRK11509 hydrogenase-1 operon 99.1 1.1E-09 2.3E-14 87.3 12.0 100 130-232 25-127 (132)
131 PTZ00253 tryparedoxin peroxida 99.1 6.2E-10 1.3E-14 95.0 10.6 102 126-229 25-164 (199)
132 KOG0191 Thioredoxin/protein di 99.1 7.5E-10 1.6E-14 103.5 11.3 99 133-234 41-139 (383)
133 cd02991 UAS_ETEA UAS family, E 99.1 1.7E-09 3.6E-14 84.7 11.3 97 132-231 10-115 (116)
134 COG1225 Bcp Peroxiredoxin [Pos 99.1 1.2E-09 2.7E-14 89.3 10.9 110 117-228 10-155 (157)
135 COG0526 TrxA Thiol-disulfide i 99.0 1.5E-09 3.2E-14 81.1 8.7 89 139-229 32-124 (127)
136 PF03190 Thioredox_DsbH: Prote 99.0 1E-09 2.2E-14 90.4 7.3 89 122-212 20-119 (163)
137 PF13728 TraF: F plasmid trans 98.9 8.2E-09 1.8E-13 89.2 11.2 86 138-225 119-214 (215)
138 KOG1731 FAD-dependent sulfhydr 98.9 2E-09 4.3E-14 102.6 6.4 107 131-237 48-161 (606)
139 COG1999 Uncharacterized protei 98.9 8E-08 1.7E-12 82.6 14.9 110 120-231 50-206 (207)
140 TIGR02739 TraF type-F conjugat 98.9 1.7E-08 3.6E-13 89.2 10.7 93 138-232 149-251 (256)
141 PRK13703 conjugal pilus assemb 98.8 4.4E-08 9.6E-13 86.1 11.0 92 139-232 143-244 (248)
142 PF14595 Thioredoxin_9: Thiore 98.8 1.4E-08 3E-13 81.0 7.1 85 138-227 40-127 (129)
143 TIGR02196 GlrX_YruB Glutaredox 98.7 7.8E-08 1.7E-12 67.4 8.4 71 143-226 2-74 (74)
144 KOG0191 Thioredoxin/protein di 98.7 5.3E-08 1.2E-12 91.0 9.4 92 138-232 161-255 (383)
145 cd01659 TRX_superfamily Thiore 98.7 9E-08 1.9E-12 63.5 7.9 62 143-205 1-63 (69)
146 KOG0914 Thioredoxin-like prote 98.6 8.2E-08 1.8E-12 81.7 7.4 74 137-213 142-222 (265)
147 PF13192 Thioredoxin_3: Thiore 98.6 4.2E-07 9.1E-12 65.5 9.3 73 144-226 3-76 (76)
148 PF02630 SCO1-SenC: SCO1/SenC; 98.6 2.4E-07 5.3E-12 77.4 8.0 95 118-214 33-173 (174)
149 COG0386 BtuE Glutathione perox 98.5 2.4E-06 5.2E-11 69.2 11.1 110 118-230 6-161 (162)
150 TIGR02200 GlrX_actino Glutared 98.5 7E-07 1.5E-11 63.5 7.2 72 143-226 2-76 (77)
151 cd03013 PRX5_like Peroxiredoxi 98.4 1.2E-06 2.6E-11 71.8 8.7 97 118-216 6-141 (155)
152 TIGR02180 GRX_euk Glutaredoxin 98.4 9.1E-07 2E-11 64.1 6.9 61 143-208 1-64 (84)
153 KOG2792 Putative cytochrome C 98.4 4.7E-06 1E-10 72.8 11.8 109 120-230 122-276 (280)
154 PRK10954 periplasmic protein d 98.4 6.6E-06 1.4E-10 70.6 12.6 42 138-179 36-80 (207)
155 PF06110 DUF953: Eukaryotic pr 98.4 1.9E-06 4.2E-11 67.6 7.8 71 137-207 17-101 (119)
156 PRK10877 protein disulfide iso 98.3 5.5E-06 1.2E-10 72.5 11.0 83 138-228 106-230 (232)
157 KOG0913 Thiol-disulfide isomer 98.3 1.6E-07 3.6E-12 80.7 1.1 96 128-229 30-126 (248)
158 PRK11200 grxA glutaredoxin 1; 98.3 7E-06 1.5E-10 60.2 9.5 78 142-229 2-83 (85)
159 PRK11657 dsbG disulfide isomer 98.2 7.9E-06 1.7E-10 72.3 10.2 86 138-226 116-249 (251)
160 PF13462 Thioredoxin_4: Thiore 98.2 2.2E-05 4.7E-10 63.7 11.7 84 138-227 11-162 (162)
161 cd03023 DsbA_Com1_like DsbA fa 98.2 1.5E-05 3.2E-10 63.8 10.4 41 138-179 4-44 (154)
162 PF02114 Phosducin: Phosducin; 98.2 5.5E-06 1.2E-10 73.8 8.6 94 139-237 146-242 (265)
163 cd03020 DsbA_DsbC_DsbG DsbA fa 98.1 2E-05 4.2E-10 67.0 9.5 79 138-225 76-197 (197)
164 cd03019 DsbA_DsbA DsbA family, 98.1 3.2E-05 7E-10 63.7 9.8 41 138-178 14-54 (178)
165 TIGR03143 AhpF_homolog putativ 98.0 5.5E-05 1.2E-09 74.2 11.9 80 138-225 474-554 (555)
166 cd02976 NrdH NrdH-redoxin (Nrd 98.0 4.2E-05 9.2E-10 53.2 7.8 69 143-224 2-72 (73)
167 TIGR02183 GRXA Glutaredoxin, G 98.0 5.7E-05 1.2E-09 55.7 8.8 76 143-228 2-81 (86)
168 KOG3425 Uncharacterized conser 98.0 2.1E-05 4.5E-10 61.1 6.3 68 137-204 23-104 (128)
169 PF13848 Thioredoxin_6: Thiore 97.9 0.00019 4E-09 59.3 11.9 95 131-227 86-184 (184)
170 PF01216 Calsequestrin: Calseq 97.9 0.00016 3.5E-09 65.9 11.4 108 118-230 23-145 (383)
171 KOG0911 Glutaredoxin-related p 97.9 9.8E-06 2.1E-10 69.5 3.4 90 138-232 16-105 (227)
172 cd03419 GRX_GRXh_1_2_like Glut 97.9 9.7E-05 2.1E-09 53.1 8.2 59 143-208 2-63 (82)
173 cd02983 P5_C P5 family, C-term 97.9 0.00012 2.6E-09 58.3 9.4 80 155-237 40-123 (130)
174 cd03072 PDI_b'_ERp44 PDIb' fam 97.8 0.0002 4.4E-09 55.4 10.0 97 132-232 9-111 (111)
175 PF00462 Glutaredoxin: Glutare 97.8 3.9E-05 8.5E-10 52.3 5.3 58 143-209 1-60 (60)
176 COG0450 AhpC Peroxiredoxin [Po 97.8 0.0002 4.3E-09 60.4 10.2 100 129-230 25-162 (194)
177 PF11009 DUF2847: Protein of u 97.7 0.00026 5.6E-09 54.3 8.9 89 132-221 10-104 (105)
178 KOG1651 Glutathione peroxidase 97.7 0.00025 5.5E-09 58.2 9.4 112 117-230 14-170 (171)
179 KOG1672 ATP binding protein [P 97.7 6.5E-05 1.4E-09 63.1 6.0 79 134-216 79-157 (211)
180 cd02066 GRX_family Glutaredoxi 97.7 0.00023 4.9E-09 49.1 7.4 59 143-210 2-62 (72)
181 KOG3414 Component of the U4/U6 97.7 0.00058 1.2E-08 53.6 10.0 92 138-232 22-123 (142)
182 cd02972 DsbA_family DsbA famil 97.6 0.00023 5E-09 51.8 7.0 61 143-203 1-91 (98)
183 PRK10329 glutaredoxin-like pro 97.6 0.00089 1.9E-08 48.8 9.6 75 143-230 3-78 (81)
184 PHA03050 glutaredoxin; Provisi 97.6 0.0002 4.3E-09 55.3 6.3 61 143-209 15-80 (108)
185 PRK15317 alkyl hydroperoxide r 97.6 0.00051 1.1E-08 66.8 10.7 81 139-227 115-196 (517)
186 TIGR02190 GlrX-dom Glutaredoxi 97.6 0.00051 1.1E-08 49.6 8.0 60 140-208 7-67 (79)
187 cd03029 GRX_hybridPRX5 Glutare 97.5 0.0012 2.5E-08 46.6 9.3 68 143-225 3-71 (72)
188 COG1331 Highly conserved prote 97.5 0.00032 6.9E-09 69.1 7.7 88 122-211 26-124 (667)
189 PF00837 T4_deiodinase: Iodoth 97.4 0.0025 5.5E-08 55.5 11.8 109 117-228 79-236 (237)
190 TIGR02194 GlrX_NrdH Glutaredox 97.4 0.00093 2E-08 47.3 7.5 68 144-223 2-70 (72)
191 PF07449 HyaE: Hydrogenase-1 e 97.4 0.00084 1.8E-08 51.7 7.6 88 129-220 16-106 (107)
192 TIGR02181 GRX_bact Glutaredoxi 97.4 0.00055 1.2E-08 49.1 6.3 58 143-209 1-60 (79)
193 cd03418 GRX_GRXb_1_3_like Glut 97.4 0.00066 1.4E-08 48.0 6.5 58 143-209 2-62 (75)
194 PF05768 DUF836: Glutaredoxin- 97.4 0.00059 1.3E-08 49.7 6.2 80 142-226 1-81 (81)
195 TIGR03140 AhpF alkyl hydropero 97.3 0.0024 5.1E-08 62.1 10.8 82 139-228 117-198 (515)
196 cd03073 PDI_b'_ERp72_ERp57 PDI 97.2 0.0028 6.1E-08 49.1 8.7 73 153-228 32-110 (111)
197 TIGR02189 GlrX-like_plant Glut 97.2 0.0016 3.4E-08 49.4 7.1 58 143-209 10-72 (99)
198 cd03027 GRX_DEP Glutaredoxin ( 97.2 0.0016 3.4E-08 46.1 6.6 59 143-210 3-63 (73)
199 TIGR03143 AhpF_homolog putativ 97.2 0.0032 7E-08 61.8 10.9 92 138-232 365-457 (555)
200 KOG0855 Alkyl hydroperoxide re 97.2 0.0022 4.7E-08 52.9 7.8 111 118-229 70-209 (211)
201 PF02966 DIM1: Mitosis protein 97.1 0.006 1.3E-07 48.4 9.6 92 137-231 18-119 (133)
202 COG0695 GrxC Glutaredoxin and 97.0 0.0066 1.4E-07 44.1 8.6 68 143-222 3-74 (80)
203 cd03028 GRX_PICOT_like Glutare 97.0 0.003 6.4E-08 46.9 6.9 62 138-208 6-73 (90)
204 PF13743 Thioredoxin_5: Thiore 96.9 0.0039 8.5E-08 52.1 7.8 33 145-177 2-34 (176)
205 TIGR00365 monothiol glutaredox 96.8 0.0047 1E-07 46.6 6.8 63 138-209 10-78 (97)
206 PRK10638 glutaredoxin 3; Provi 96.8 0.0058 1.3E-07 44.4 6.6 59 143-210 4-64 (83)
207 KOG2507 Ubiquitin regulatory p 96.8 0.011 2.4E-07 55.2 9.7 93 138-230 17-112 (506)
208 PF01323 DSBA: DSBA-like thior 96.7 0.016 3.6E-07 48.1 10.2 37 142-178 1-38 (193)
209 PRK10824 glutaredoxin-4; Provi 96.4 0.012 2.6E-07 45.9 6.8 64 138-210 13-82 (115)
210 cd02981 PDI_b_family Protein D 96.4 0.044 9.6E-07 40.4 9.5 87 132-227 10-96 (97)
211 COG1651 DsbG Protein-disulfide 96.3 0.04 8.7E-07 48.0 10.2 32 139-170 84-115 (244)
212 KOG1752 Glutaredoxin and relat 96.2 0.028 6.2E-07 43.0 7.4 62 139-209 13-78 (104)
213 cd02990 UAS_FAF1 UAS family, F 96.0 0.19 4.1E-06 40.4 11.6 92 136-230 18-134 (136)
214 PF00255 GSHPx: Glutathione pe 95.8 0.029 6.2E-07 43.3 6.1 60 119-181 3-63 (108)
215 PF07912 ERp29_N: ERp29, N-ter 95.5 0.14 2.9E-06 40.4 8.7 99 128-228 10-118 (126)
216 PTZ00062 glutaredoxin; Provisi 95.4 0.058 1.2E-06 46.3 7.0 63 138-209 111-179 (204)
217 PRK12759 bifunctional gluaredo 95.3 0.095 2.1E-06 49.7 8.8 86 143-240 4-99 (410)
218 PF05176 ATP-synt_10: ATP10 pr 95.3 0.14 3E-06 45.5 9.3 107 119-226 103-247 (252)
219 KOG0852 Alkyl hydroperoxide re 95.0 0.15 3.3E-06 42.5 7.9 93 137-229 31-161 (196)
220 cd02977 ArsC_family Arsenate R 94.3 0.055 1.2E-06 41.0 3.8 78 144-227 2-85 (105)
221 PF13778 DUF4174: Domain of un 94.3 0.63 1.4E-05 36.3 9.8 95 132-228 3-111 (118)
222 KOG3170 Conserved phosducin-li 94.3 0.15 3.3E-06 43.4 6.6 84 137-227 109-199 (240)
223 PF06053 DUF929: Domain of unk 94.0 0.41 8.8E-06 42.3 9.0 61 135-204 54-114 (249)
224 COG3019 Predicted metal-bindin 94.0 1.3 2.7E-05 35.7 10.8 83 142-237 27-113 (149)
225 PF09695 YtfJ_HI0045: Bacteria 93.7 0.72 1.6E-05 37.9 9.2 93 137-229 35-158 (160)
226 PF13848 Thioredoxin_6: Thiore 93.7 0.59 1.3E-05 38.2 9.0 68 157-230 8-76 (184)
227 KOG3171 Conserved phosducin-li 93.4 0.14 3.1E-06 44.0 4.9 94 140-238 160-256 (273)
228 COG2077 Tpx Peroxiredoxin [Pos 93.2 0.65 1.4E-05 37.9 8.1 90 119-211 26-146 (158)
229 cd03067 PDI_b_PDIR_N PDIb fami 93.0 0.98 2.1E-05 34.4 8.2 94 132-226 12-109 (112)
230 cd03060 GST_N_Omega_like GST_N 92.9 0.91 2E-05 31.4 7.7 59 144-209 2-60 (71)
231 PHA03075 glutaredoxin-like pro 92.6 1.4 3E-05 34.3 8.8 85 140-229 2-115 (123)
232 cd03031 GRX_GRX_like Glutaredo 92.3 0.47 1E-05 38.6 6.3 58 144-210 3-72 (147)
233 cd03036 ArsC_like Arsenate Red 92.3 0.14 3E-06 39.4 3.0 60 144-209 2-63 (111)
234 cd03040 GST_N_mPGES2 GST_N fam 92.2 2.1 4.6E-05 29.8 9.0 73 144-229 3-76 (77)
235 COG4545 Glutaredoxin-related p 92.0 0.46 9.9E-06 34.1 5.1 59 144-210 5-77 (85)
236 COG2761 FrnE Predicted dithiol 91.3 0.61 1.3E-05 40.6 6.3 44 186-234 175-218 (225)
237 KOG2603 Oligosaccharyltransfer 91.3 1.1 2.4E-05 40.7 8.0 91 139-232 60-169 (331)
238 cd03041 GST_N_2GST_N GST_N fam 91.1 2.1 4.6E-05 30.1 8.1 71 144-227 3-75 (77)
239 TIGR01617 arsC_related transcr 91.0 0.37 8E-06 37.3 4.3 75 144-227 2-86 (117)
240 cd03069 PDI_b_ERp57 PDIb famil 90.9 2.9 6.2E-05 31.5 9.0 84 132-227 11-102 (104)
241 PF04592 SelP_N: Selenoprotein 89.7 2.2 4.7E-05 37.3 8.2 93 137-229 24-146 (238)
242 cd03066 PDI_b_Calsequestrin_mi 89.3 5.7 0.00012 29.6 9.5 89 131-228 10-100 (102)
243 cd03051 GST_N_GTT2_like GST_N 88.8 1.4 3.1E-05 30.1 5.4 58 145-208 3-62 (74)
244 cd00570 GST_N_family Glutathio 88.1 2 4.3E-05 28.3 5.7 53 145-201 3-55 (71)
245 cd03032 ArsC_Spx Arsenate Redu 87.6 0.54 1.2E-05 36.3 2.9 79 143-227 2-85 (115)
246 TIGR02742 TrbC_Ftype type-F co 87.2 2.7 5.9E-05 33.4 6.7 47 175-226 55-112 (130)
247 PF07315 DUF1462: Protein of u 86.1 12 0.00026 27.8 9.4 72 150-226 8-93 (93)
248 PF09673 TrbC_Ftype: Type-F co 85.4 6.2 0.00013 30.5 7.8 63 156-222 36-109 (113)
249 cd02974 AhpF_NTD_N Alkyl hydro 85.3 12 0.00027 27.8 9.1 75 138-228 18-93 (94)
250 TIGR02654 circ_KaiB circadian 85.3 3.4 7.3E-05 30.6 5.9 73 141-217 4-77 (87)
251 cd02978 KaiB_like KaiB-like fa 85.2 3 6.5E-05 29.7 5.4 59 143-203 4-63 (72)
252 KOG1364 Predicted ubiquitin re 85.2 1.7 3.6E-05 40.1 5.1 63 172-234 131-194 (356)
253 PRK09301 circadian clock prote 85.0 3.4 7.3E-05 31.5 5.9 75 139-217 5-80 (103)
254 PRK01655 spxA transcriptional 84.7 0.52 1.1E-05 37.4 1.5 34 143-182 2-35 (131)
255 PF13417 GST_N_3: Glutathione 84.7 11 0.00024 26.2 9.2 72 146-231 2-73 (75)
256 PRK12559 transcriptional regul 84.6 0.85 1.9E-05 36.2 2.7 32 143-180 2-33 (131)
257 cd03035 ArsC_Yffb Arsenate Red 84.4 0.89 1.9E-05 34.6 2.6 57 144-211 2-63 (105)
258 PF06953 ArsD: Arsenical resis 84.3 5.4 0.00012 31.5 7.0 80 148-231 10-104 (123)
259 cd03037 GST_N_GRX2 GST_N famil 84.2 5.6 0.00012 27.2 6.5 56 145-208 3-58 (71)
260 KOG2640 Thioredoxin [Function 83.3 0.47 1E-05 43.0 0.7 87 139-230 76-163 (319)
261 PF04134 DUF393: Protein of un 83.1 4.6 9.9E-05 30.6 6.2 58 146-207 2-61 (114)
262 PRK15317 alkyl hydroperoxide r 82.9 11 0.00023 36.7 10.1 84 139-237 18-102 (517)
263 COG3054 Predicted transcriptio 82.1 27 0.00058 28.7 10.8 39 190-228 140-179 (184)
264 KOG2244 Highly conserved prote 81.8 0.84 1.8E-05 44.5 1.8 79 128-208 101-190 (786)
265 cd03024 DsbA_FrnE DsbA family, 80.7 3.1 6.8E-05 34.6 4.8 37 185-226 165-201 (201)
266 KOG0854 Alkyl hydroperoxide re 80.6 23 0.00051 29.8 9.7 91 139-229 31-168 (224)
267 PF06764 DUF1223: Protein of u 80.5 25 0.00055 30.1 10.3 79 145-231 4-100 (202)
268 TIGR03140 AhpF alkyl hydropero 80.2 14 0.00031 35.9 9.9 82 139-234 18-100 (515)
269 PF08806 Sep15_SelM: Sep15/Sel 78.8 3.1 6.6E-05 30.1 3.6 35 195-229 41-76 (78)
270 PRK13344 spxA transcriptional 78.3 2.2 4.9E-05 33.9 3.0 33 143-181 2-34 (132)
271 PRK04517 hypothetical protein; 77.8 12 0.00025 32.4 7.6 130 92-232 1-157 (216)
272 cd03055 GST_N_Omega GST_N fami 77.7 20 0.00043 25.9 7.8 60 143-209 19-78 (89)
273 cd03059 GST_N_SspA GST_N famil 75.8 11 0.00024 25.6 5.7 52 144-200 2-53 (73)
274 KOG4498 Uncharacterized conser 75.1 5.7 0.00012 33.6 4.6 85 123-210 35-121 (197)
275 cd03025 DsbA_FrnE_like DsbA fa 73.0 6.2 0.00013 32.5 4.5 29 143-171 3-31 (193)
276 cd03045 GST_N_Delta_Epsilon GS 72.0 6.8 0.00015 26.8 3.9 53 144-200 2-56 (74)
277 COG3531 Predicted protein-disu 71.0 8 0.00017 33.0 4.6 44 186-230 165-210 (212)
278 cd03062 TRX_Fd_Sucrase TRX-lik 68.6 12 0.00026 28.0 4.8 42 196-242 53-96 (97)
279 COG3634 AhpF Alkyl hydroperoxi 67.4 23 0.0005 33.3 7.1 82 138-227 115-196 (520)
280 cd03022 DsbA_HCCA_Iso DsbA fam 65.5 10 0.00022 31.0 4.3 34 186-225 158-191 (192)
281 PF09822 ABC_transp_aux: ABC-t 65.5 82 0.0018 27.6 10.3 94 139-232 24-145 (271)
282 COG3411 Ferredoxin [Energy pro 64.8 22 0.00047 24.7 4.9 41 196-241 17-57 (64)
283 PRK13730 conjugal transfer pil 63.3 25 0.00055 30.2 6.2 39 186-226 153-191 (212)
284 COG5429 Uncharacterized secret 62.8 52 0.0011 29.0 8.0 84 141-230 42-142 (261)
285 COG3011 Predicted thiol-disulf 62.6 45 0.00098 26.8 7.2 69 138-210 5-74 (137)
286 COG4837 Uncharacterized protei 59.5 74 0.0016 23.9 9.2 83 141-228 4-102 (106)
287 cd03056 GST_N_4 GST_N family, 59.3 26 0.00056 23.5 4.8 53 145-201 3-57 (73)
288 COG5294 Uncharacterized protei 58.8 17 0.00036 28.1 3.9 59 92-150 1-76 (113)
289 TIGR03521 GldG gliding-associa 58.3 1.9E+02 0.0042 28.5 12.4 59 139-197 47-116 (552)
290 PF02743 Cache_1: Cache domain 54.6 10 0.00022 26.7 2.1 40 172-211 29-68 (81)
291 cd03034 ArsC_ArsC Arsenate Red 53.2 14 0.0003 28.3 2.7 75 144-227 2-84 (112)
292 PRK00366 ispG 4-hydroxy-3-meth 52.7 32 0.00069 32.1 5.4 44 185-229 313-357 (360)
293 PF15284 PAGK: Phage-encoded v 52.4 17 0.00037 24.9 2.7 21 92-112 1-21 (61)
294 KOG1422 Intracellular Cl- chan 52.1 91 0.002 27.0 7.7 69 150-232 20-88 (221)
295 PF11287 DUF3088: Protein of u 50.7 25 0.00054 27.2 3.7 52 150-203 23-76 (112)
296 COG0821 gcpE 1-hydroxy-2-methy 50.4 24 0.00053 32.6 4.2 80 151-232 264-354 (361)
297 TIGR00014 arsC arsenate reduct 49.1 20 0.00042 27.5 3.0 75 144-227 2-85 (114)
298 COG2761 FrnE Predicted dithiol 48.0 28 0.0006 30.4 4.1 33 139-171 3-36 (225)
299 PRK10026 arsenate reductase; P 47.6 30 0.00066 27.8 4.0 21 143-163 4-24 (141)
300 cd03025 DsbA_FrnE_like DsbA fa 47.6 24 0.00051 28.9 3.6 21 186-206 160-180 (193)
301 COG1393 ArsC Arsenate reductas 47.2 17 0.00037 28.2 2.4 64 143-210 3-66 (117)
302 PRK13620 psbV cytochrome c-550 45.8 7.1 0.00015 33.5 0.1 17 214-230 183-199 (215)
303 PF07689 KaiB: KaiB domain; I 45.7 5.9 0.00013 28.9 -0.3 53 148-202 5-58 (82)
304 cd03052 GST_N_GDAP1 GST_N fami 44.6 62 0.0013 22.3 4.9 59 144-209 2-62 (73)
305 cd03049 GST_N_3 GST_N family, 44.5 86 0.0019 21.1 5.6 60 145-209 3-62 (73)
306 cd03063 TRX_Fd_FDH_beta TRX-li 41.7 69 0.0015 23.8 4.9 44 196-244 48-91 (92)
307 COG0678 AHP1 Peroxiredoxin [Po 41.3 68 0.0015 26.4 5.1 45 136-181 34-83 (165)
308 PRK01904 hypothetical protein; 41.1 2.1E+02 0.0046 24.6 8.6 130 92-232 1-155 (219)
309 PF05988 DUF899: Bacterial pro 38.2 2.6E+02 0.0057 24.1 9.3 62 120-182 49-117 (211)
310 PF00879 Defensin_propep: Defe 37.6 71 0.0015 21.2 3.8 12 138-149 38-49 (52)
311 cd03053 GST_N_Phi GST_N family 36.7 1.2E+02 0.0026 20.5 5.3 54 143-200 2-57 (76)
312 cd03068 PDI_b_ERp72 PDIb famil 36.7 1.8E+02 0.0039 21.8 9.5 85 132-227 11-106 (107)
313 cd03033 ArsC_15kD Arsenate Red 35.9 19 0.00041 27.7 1.1 21 143-163 2-22 (113)
314 cd03061 GST_N_CLIC GST_N famil 35.6 1.8E+02 0.0039 21.4 8.5 69 148-230 19-87 (91)
315 PF07411 DUF1508: Domain of un 35.1 84 0.0018 20.3 4.0 37 196-232 5-41 (49)
316 COG1512 Beta-propeller domains 35.0 3.4E+02 0.0073 24.4 12.0 60 155-214 49-117 (271)
317 cd03074 PDI_b'_Calsequestrin_C 34.4 2.2E+02 0.0048 22.1 10.3 90 140-229 21-120 (120)
318 TIGR03759 conj_TIGR03759 integ 34.0 1.2E+02 0.0026 26.0 5.6 49 141-193 110-160 (200)
319 PF08139 LPAM_1: Prokaryotic m 33.9 52 0.0011 18.4 2.3 15 93-107 5-19 (25)
320 PRK10853 putative reductase; P 33.0 13 0.00029 28.8 -0.2 58 143-211 2-64 (118)
321 cd03021 DsbA_GSTK DsbA family, 32.7 83 0.0018 26.4 4.7 40 184-226 168-209 (209)
322 PF00571 CBS: CBS domain CBS d 30.9 95 0.0021 19.6 3.8 47 174-225 9-55 (57)
323 COG0525 ValS Valyl-tRNA synthe 30.0 67 0.0015 33.6 4.2 35 194-229 286-324 (877)
324 cd03022 DsbA_HCCA_Iso DsbA fam 30.0 81 0.0018 25.6 4.1 33 145-177 3-35 (192)
325 PRK09481 sspA stringent starva 28.7 3.2E+02 0.007 22.7 7.7 57 139-200 7-63 (211)
326 PF06491 Disulph_isomer: Disul 28.5 3.1E+02 0.0067 21.9 7.5 95 132-229 27-132 (136)
327 PRK03991 threonyl-tRNA synthet 27.6 2.7E+02 0.0058 28.1 7.9 75 161-236 515-599 (613)
328 PF11760 CbiG_N: Cobalamin syn 27.0 1.9E+02 0.0042 21.1 5.1 38 195-232 37-76 (84)
329 PRK13617 psbV cytochrome c-550 26.1 39 0.00085 28.2 1.4 19 214-232 138-156 (170)
330 TIGR00612 ispG_gcpE 1-hydroxy- 26.1 58 0.0013 30.2 2.6 50 172-227 292-343 (346)
331 cd00307 RuBisCO_small_like Rib 25.9 72 0.0016 23.4 2.7 35 146-180 28-71 (84)
332 PF00352 TBP: Transcription fa 25.6 1.2E+02 0.0027 21.7 3.9 30 197-229 50-79 (86)
333 PRK12450 foldase protein PrsA; 25.4 1E+02 0.0023 27.9 4.2 43 92-134 1-44 (309)
334 KOG4614 Inner membrane protein 25.0 1.3E+02 0.0028 26.6 4.5 30 197-226 249-278 (287)
335 PF01216 Calsequestrin: Calseq 24.9 5.9E+02 0.013 24.0 11.2 97 139-235 268-374 (383)
336 PRK14443 acylphosphatase; Prov 24.7 2.1E+02 0.0046 21.2 5.1 42 185-232 24-66 (93)
337 cd02407 PTH2_family Peptidyl-t 24.7 2.3E+02 0.005 21.8 5.5 54 172-225 49-109 (115)
338 PF09116 gp45-slide_C: gp45 sl 24.7 54 0.0012 25.4 1.9 35 178-212 5-39 (112)
339 KOG3384 Selenoprotein [General 24.1 1.3E+02 0.0028 24.3 3.9 36 195-230 116-152 (154)
340 PLN02734 glycyl-tRNA synthetas 23.7 4.3E+02 0.0093 27.1 8.4 77 158-234 585-666 (684)
341 PF03960 ArsC: ArsC family; I 23.3 12 0.00026 28.3 -2.0 73 146-227 1-82 (110)
342 cd03527 RuBisCO_small Ribulose 22.5 1.2E+02 0.0026 22.9 3.4 36 146-181 45-87 (99)
343 PRK14864 putative biofilm stre 21.9 3.6E+02 0.0079 20.5 8.7 23 155-177 63-86 (104)
344 PRK10387 glutaredoxin 2; Provi 21.1 3.8E+02 0.0082 21.9 6.6 56 146-209 4-59 (210)
345 COG3315 O-Methyltransferase in 20.9 4.2E+02 0.009 24.0 7.2 67 158-231 123-198 (297)
346 PF04551 GcpE: GcpE protein; 20.9 23 0.0005 32.9 -0.9 76 151-228 271-358 (359)
347 PF07788 DUF1626: Protein of u 20.9 2.6E+02 0.0057 19.7 4.6 59 135-194 8-70 (70)
348 PRK14426 acylphosphatase; Prov 20.9 2.7E+02 0.0058 20.4 5.0 42 185-232 24-66 (92)
349 PF00708 Acylphosphatase: Acyl 20.8 2.1E+02 0.0045 20.7 4.4 43 185-232 24-66 (91)
350 PRK14420 acylphosphatase; Prov 20.5 2.8E+02 0.006 20.1 5.0 42 185-231 22-63 (91)
351 KOG0541 Alkyl hydroperoxide re 20.5 4.1E+02 0.0088 22.0 6.2 52 129-182 34-90 (171)
352 PF06679 DUF1180: Protein of u 20.1 3.2E+02 0.0069 22.6 5.7 26 87-112 88-113 (163)
No 1
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.94 E-value=1.8e-26 Score=187.11 Aligned_cols=140 Identities=58% Similarity=0.998 Sum_probs=126.5
Q ss_pred ccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEE
Q 024784 121 SLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFA 200 (262)
Q Consensus 121 ~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~v 200 (262)
++.++..+...+++++.+++++||+||++||++|+.+.|.+.++++++.+++.|+.|++|...+.+++++|+|.++||++
T Consensus 2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v 81 (142)
T cd02950 2 SLEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFV 81 (142)
T ss_pred ChHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEE
Confidence 45677788888999999999999999999999999999999999999987789999999987777899999999999999
Q ss_pred EEcCCCeEEEEEeCCCCHHHHHHHHHHHhCCCCCCCcccccCCCCchhhhhh-ccccCCCCC
Q 024784 201 FLDREGNEEGNVVGRLPRQYLLENVDALAHGKASIPHARIVGQYSSAENRKV-HQVVDPRSH 261 (262)
Q Consensus 201 liD~~Gkiv~~~~G~~~~e~l~~~l~~l~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~ 261 (262)
|||++|+++.++.|..+.++|.++|++++++. ..|.++..|+.+..++-+. ..-.|||||
T Consensus 82 ~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (142)
T cd02950 82 FLDREGNEEGQSIGLQPKQVLAQNLDALVAGE-PLPYANAVGQTSELKSPKNPSSQDDPRSH 142 (142)
T ss_pred EECCCCCEEEEEeCCCCHHHHHHHHHHHHcCC-CCCcccccCcccccCCCcccccCCCCCCC
Confidence 99999999999999999999999999999977 8899999999998876443 334499998
No 2
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=7.1e-21 Score=152.89 Aligned_cols=93 Identities=17% Similarity=0.536 Sum_probs=88.4
Q ss_pred HhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeC
Q 024784 135 ALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVG 214 (262)
Q Consensus 135 ~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G 214 (262)
.++.+.||||+|||+||++|+.+.|.|+++..+|.++++++.||+|+.. +++++|+|..+||+++| ++|+.+.++.|
T Consensus 57 Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~--ela~~Y~I~avPtvlvf-knGe~~d~~vG 133 (150)
T KOG0910|consen 57 VINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHP--ELAEDYEISAVPTVLVF-KNGEKVDRFVG 133 (150)
T ss_pred HHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccccc--chHhhcceeeeeEEEEE-ECCEEeeeecc
Confidence 3467999999999999999999999999999999999999999999886 99999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHhC
Q 024784 215 RLPRQYLLENVDALAH 230 (262)
Q Consensus 215 ~~~~e~l~~~l~~l~~ 230 (262)
..+.+.|.++|++++.
T Consensus 134 ~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 134 AVPKEQLRSLIKKFLK 149 (150)
T ss_pred cCCHHHHHHHHHHHhc
Confidence 9999999999999875
No 3
>PHA02278 thioredoxin-like protein
Probab=99.83 E-value=7e-20 Score=140.57 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=82.2
Q ss_pred chHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc--hHHHHHHcCCCCccEEEEEcCCCeE
Q 024784 131 PYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK--WEQELDEFGVEGIPHFAFLDREGNE 208 (262)
Q Consensus 131 ~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~--~~~l~~~~gi~~~Pt~vliD~~Gki 208 (262)
.+.+.+.+++++||+|||+||++|+.+.|.+.++++++..++.|+.+|+|..+ ..+++++|+|.++||+++| ++|++
T Consensus 6 ~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f-k~G~~ 84 (103)
T PHA02278 6 DLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY-KDGQL 84 (103)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE-ECCEE
Confidence 45666678999999999999999999999999999886655789999999753 3589999999999999999 89999
Q ss_pred EEEEeCCCCHHHHHHH
Q 024784 209 EGNVVGRLPRQYLLEN 224 (262)
Q Consensus 209 v~~~~G~~~~e~l~~~ 224 (262)
+.++.|..+.+.+.++
T Consensus 85 v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 85 VKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEeCCCCHHHHHhh
Confidence 9999999998887764
No 4
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.83 E-value=1.9e-19 Score=151.96 Aligned_cols=110 Identities=23% Similarity=0.358 Sum_probs=87.5
Q ss_pred ccccccccc--cccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCch------------
Q 024784 119 GVSLKDLSA--AALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKW------------ 184 (262)
Q Consensus 119 ~~~l~~~~g--~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~------------ 184 (262)
.+++.++++ +...+. ...+||+++|+||++||++|++++|.|.++.++ .+.+++|++|++..
T Consensus 47 ~f~l~~~~g~g~~~~~~-~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~ 122 (185)
T PRK15412 47 KFRLESLENPGQFYQAD-VLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNP 122 (185)
T ss_pred CcCCccCCCCCccccHH-HhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCC
Confidence 466666664 333333 234799999999999999999999999998653 38899999865421
Q ss_pred ---------HHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHhCCC
Q 024784 185 ---------EQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVDALAHGK 232 (262)
Q Consensus 185 ---------~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~~~~ 232 (262)
..+...|++.++|+++++|++|++++++.|..+.+++++.|+.++...
T Consensus 123 ~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~ 179 (185)
T PRK15412 123 YALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKY 179 (185)
T ss_pred CceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 123457899999999999999999999999999999999999988543
No 5
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.81 E-value=4e-19 Score=140.23 Aligned_cols=101 Identities=26% Similarity=0.421 Sum_probs=88.1
Q ss_pred chHHHhcCC-CcEEEEEEcCCChhhHhhhHHHH---HHHHHhcCcceEEEEEccCC-----------chHHHHHHcCCCC
Q 024784 131 PYEQALTNG-KPTVLEFYADWCEVCRELAPDVY---RVEQQYKDRVNFVMLNVDNT-----------KWEQELDEFGVEG 195 (262)
Q Consensus 131 ~l~~~~~~~-k~vlV~F~a~wC~~C~~~~p~L~---~l~~~~~~~v~~v~V~vD~~-----------~~~~l~~~~gi~~ 195 (262)
.+.++.+++ |+++|+||++||++|+.+.+.+. ++.+.+.+.+.++.+|+|.. ...+++.+|+|.+
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~ 84 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF 84 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc
Confidence 355677889 99999999999999999999885 56666766688999999864 2468899999999
Q ss_pred ccEEEEEcCC-CeEEEEEeCCCCHHHHHHHHHHHhCC
Q 024784 196 IPHFAFLDRE-GNEEGNVVGRLPRQYLLENVDALAHG 231 (262)
Q Consensus 196 ~Pt~vliD~~-Gkiv~~~~G~~~~e~l~~~l~~l~~~ 231 (262)
+||++|+|++ |+++.++.|..+.+++.++|+.++++
T Consensus 85 ~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 85 TPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred ccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 9999999999 89999999999999999999998865
No 6
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.80 E-value=1.5e-18 Score=143.81 Aligned_cols=109 Identities=26% Similarity=0.557 Sum_probs=96.0
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCc-------------
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTK------------- 183 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~------------- 183 (262)
+.+++.+.+|+..++.+. +|++++|+||++||++|+...+.+.++++++.+. +.++.|+.|...
T Consensus 42 p~~~~~~~~g~~~~l~~~--~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~ 119 (173)
T PRK03147 42 PNFVLTDLEGKKIELKDL--KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLT 119 (173)
T ss_pred CCcEeecCCCCEEeHHHc--CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCC
Confidence 347888888888887763 6899999999999999999999999999999876 899999987542
Q ss_pred -------hHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHH
Q 024784 184 -------WEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVDAL 228 (262)
Q Consensus 184 -------~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l 228 (262)
..++.+.|++.++|+++++|++|+++..+.|..+.+++.+.|+++
T Consensus 120 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 120 FPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred ceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 246778999999999999999999999999999999999998875
No 7
>PRK10996 thioredoxin 2; Provisional
Probab=99.80 E-value=5.9e-19 Score=142.45 Aligned_cols=103 Identities=22% Similarity=0.486 Sum_probs=91.5
Q ss_pred cccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEc
Q 024784 124 DLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLD 203 (262)
Q Consensus 124 ~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD 203 (262)
.++....++++.+.++++++|+||++||++|+.+.|.+.++++++.+++.++.+|++... +++++|+|.++||++++
T Consensus 37 ~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~--~l~~~~~V~~~Ptlii~- 113 (139)
T PRK10996 37 VINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER--ELSARFRIRSIPTIMIF- 113 (139)
T ss_pred CEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH--HHHHhcCCCccCEEEEE-
Confidence 334455567777788999999999999999999999999999999887888888888765 89999999999999999
Q ss_pred CCCeEEEEEeCCCCHHHHHHHHHHHh
Q 024784 204 REGNEEGNVVGRLPRQYLLENVDALA 229 (262)
Q Consensus 204 ~~Gkiv~~~~G~~~~e~l~~~l~~l~ 229 (262)
++|+++.++.|..+.++|.++|++++
T Consensus 114 ~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 114 KNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred ECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 69999999999999999999999864
No 8
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.80 E-value=7.8e-19 Score=136.58 Aligned_cols=89 Identities=13% Similarity=0.282 Sum_probs=79.4
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCC
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLP 217 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~ 217 (262)
.++++||+|||+||++|+.+.|.|.++++++.+.+.|+.||+|... +++++|+|.++||++++ ++|+++.+..|..+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~--~la~~~~V~~iPTf~~f-k~G~~v~~~~G~~~ 89 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP--DFNKMYELYDPPTVMFF-FRNKHMKIDLGTGN 89 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH--HHHHHcCCCCCCEEEEE-ECCEEEEEEcCCCC
Confidence 5789999999999999999999999999999987899999999875 99999999999999999 99999999888654
Q ss_pred ----------HHHHHHHHHHHh
Q 024784 218 ----------RQYLLENVDALA 229 (262)
Q Consensus 218 ----------~e~l~~~l~~l~ 229 (262)
.+.|.+.++.+-
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~ 111 (114)
T cd02954 90 NNKINWVFEDKQEFIDIIETIY 111 (114)
T ss_pred CceEEEecCcHHHHHHHHHHHh
Confidence 566777766554
No 9
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.80 E-value=5.6e-19 Score=134.97 Aligned_cols=94 Identities=22% Similarity=0.475 Sum_probs=82.6
Q ss_pred cchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeE
Q 024784 130 LPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNE 208 (262)
Q Consensus 130 ~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gki 208 (262)
..+++++.++++++|+|||+||++|+.+.|.+.++++++++. +.|+.+|+| . .+++++|+|.++||++++ ++|++
T Consensus 8 ~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~--~~~~~~~~v~~~Pt~~~~-~~g~~ 83 (102)
T cd02948 8 EEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T--IDTLKRYRGKCEPTFLFY-KNGEL 83 (102)
T ss_pred HHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C--HHHHHHcCCCcCcEEEEE-ECCEE
Confidence 356667778999999999999999999999999999999865 789999999 3 378999999999999999 89999
Q ss_pred EEEEeCCCCHHHHHHHHHHH
Q 024784 209 EGNVVGRLPRQYLLENVDAL 228 (262)
Q Consensus 209 v~~~~G~~~~e~l~~~l~~l 228 (262)
+.+..|. +.+.+.++|+++
T Consensus 84 ~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 84 VAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred EEEEecC-ChHHHHHHHhhC
Confidence 9999995 778888888764
No 10
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.79 E-value=5e-19 Score=135.19 Aligned_cols=96 Identities=29% Similarity=0.476 Sum_probs=83.9
Q ss_pred chHHHhcCCCcEEEEEEcCCChhhHhhhHHH---HHHHHHhcCcceEEEEEccCCc--hHHHHHHcCCCCccEEEEEcC-
Q 024784 131 PYEQALTNGKPTVLEFYADWCEVCRELAPDV---YRVEQQYKDRVNFVMLNVDNTK--WEQELDEFGVEGIPHFAFLDR- 204 (262)
Q Consensus 131 ~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L---~~l~~~~~~~v~~v~V~vD~~~--~~~l~~~~gi~~~Pt~vliD~- 204 (262)
.+.++..+++++||+||++||++|+.+.+.+ .++.+.+++++.++.+|++..+ ..+++++|+|.++||++++++
T Consensus 3 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~ 82 (104)
T cd02953 3 ALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPG 82 (104)
T ss_pred HHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCC
Confidence 3566778899999999999999999999888 5788888767899999987543 468999999999999999988
Q ss_pred CCeEEEEEeCCCCHHHHHHHHH
Q 024784 205 EGNEEGNVVGRLPRQYLLENVD 226 (262)
Q Consensus 205 ~Gkiv~~~~G~~~~e~l~~~l~ 226 (262)
+|+++.++.|..+.++|.++|+
T Consensus 83 ~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 83 GEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCcccccccCHHHHHHHhC
Confidence 8999999999999999988774
No 11
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.79 E-value=1.4e-18 Score=133.08 Aligned_cols=87 Identities=21% Similarity=0.318 Sum_probs=75.1
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc-hHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCC
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK-WEQELDEFGVEGIPHFAFLDREGNEEGNVVGRL 216 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~-~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~ 216 (262)
+++++||+|||+||++|+.++|.|+++++++ +.+.|+.||+|... ..+++++|+|.++||++++ ++|+++.++.|..
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~-~~G~~v~~~~G~~ 91 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFY-KDGEKIHEEEGIG 91 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE-eCCeEEEEEeCCC
Confidence 4899999999999999999999999999999 45899999998763 3479999999999999888 9999999999955
Q ss_pred CHHHHHHHHHH
Q 024784 217 PRQYLLENVDA 227 (262)
Q Consensus 217 ~~e~l~~~l~~ 227 (262)
.+++.+.+.+
T Consensus 92 -~~~l~~~~~~ 101 (103)
T cd02985 92 -PDELIGDVLY 101 (103)
T ss_pred -HHHHHHHHHh
Confidence 4556665543
No 12
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.79 E-value=1.4e-18 Score=130.55 Aligned_cols=86 Identities=24% Similarity=0.463 Sum_probs=78.7
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCC
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLP 217 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~ 217 (262)
+++++||+||++||++|+.+.|.+.++++.+.+.+.++.||+|... +++++|+|.++||++++ .+|+++.++.|..+
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~--~l~~~~~i~~~Pt~~~~-~~g~~~~~~~g~~~ 87 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP--QIAQQFGVQALPTVYLF-AAGQPVDGFQGAQP 87 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH--HHHHHcCCCCCCEEEEE-eCCEEeeeecCCCC
Confidence 4789999999999999999999999999999877888888888765 99999999999999999 59999999999999
Q ss_pred HHHHHHHHH
Q 024784 218 RQYLLENVD 226 (262)
Q Consensus 218 ~e~l~~~l~ 226 (262)
.++|.++|+
T Consensus 88 ~~~l~~~l~ 96 (96)
T cd02956 88 EEQLRQMLD 96 (96)
T ss_pred HHHHHHHhC
Confidence 999988874
No 13
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.78 E-value=1.5e-18 Score=131.84 Aligned_cols=92 Identities=17% Similarity=0.357 Sum_probs=82.8
Q ss_pred cchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEE
Q 024784 130 LPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 130 ~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv 209 (262)
.++++.+.++++++|+||++||++|+.+.|.+.++++++++.+.|+.||+|... .++++|+|.++||++++ ++|+.+
T Consensus 9 ~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~-~~g~~~ 85 (101)
T cd03003 9 GDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR--MLCRSQGVNSYPSLYVF-PSGMNP 85 (101)
T ss_pred hhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH--HHHHHcCCCccCEEEEE-cCCCCc
Confidence 356667778899999999999999999999999999999987889999998764 89999999999999999 899999
Q ss_pred EEEeCCCCHHHHHHH
Q 024784 210 GNVVGRLPRQYLLEN 224 (262)
Q Consensus 210 ~~~~G~~~~e~l~~~ 224 (262)
.++.|..+.+.|.++
T Consensus 86 ~~~~G~~~~~~l~~f 100 (101)
T cd03003 86 EKYYGDRSKESLVKF 100 (101)
T ss_pred ccCCCCCCHHHHHhh
Confidence 999999999887764
No 14
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.78 E-value=6.4e-18 Score=127.50 Aligned_cols=97 Identities=27% Similarity=0.624 Sum_probs=87.9
Q ss_pred ccchHHHhcC-CCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCe
Q 024784 129 ALPYEQALTN-GKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGN 207 (262)
Q Consensus 129 ~~~l~~~~~~-~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gk 207 (262)
..++++.+.+ ++++||+||++||++|+.+.|.+.++.+.+.+++.|+.||.+.. ..++++|+|.++||++++ .+|+
T Consensus 6 ~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~-~~g~ 82 (103)
T PF00085_consen 6 DENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN--KELCKKYGVKSVPTIIFF-KNGK 82 (103)
T ss_dssp TTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS--HHHHHHTTCSSSSEEEEE-ETTE
T ss_pred HHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc--chhhhccCCCCCCEEEEE-ECCc
Confidence 4457777766 89999999999999999999999999999997788888888865 499999999999999999 8999
Q ss_pred EEEEEeCCCCHHHHHHHHHHH
Q 024784 208 EEGNVVGRLPRQYLLENVDAL 228 (262)
Q Consensus 208 iv~~~~G~~~~e~l~~~l~~l 228 (262)
.+.++.|..+.+.|.++|++.
T Consensus 83 ~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 83 EVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEEEESSSSHHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHcC
Confidence 999999999999999999874
No 15
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.78 E-value=1.7e-18 Score=134.39 Aligned_cols=88 Identities=19% Similarity=0.344 Sum_probs=81.0
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCC
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRL 216 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~ 216 (262)
++++++|+||++||++|+.+.|.+.++.+++.+. +.++.||+|... .++++|+|.++||++++ ++|+++.++.|..
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~--~l~~~~~V~~~Pt~~i~-~~g~~~~~~~G~~ 99 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER--RLARKLGAHSVPAIVGI-INGQVTFYHDSSF 99 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH--HHHHHcCCccCCEEEEE-ECCEEEEEecCCC
Confidence 6899999999999999999999999999999764 888999988765 89999999999999999 6999999999999
Q ss_pred CHHHHHHHHHHH
Q 024784 217 PRQYLLENVDAL 228 (262)
Q Consensus 217 ~~e~l~~~l~~l 228 (262)
+.++|.++|+++
T Consensus 100 ~~~~l~~~i~~~ 111 (111)
T cd02963 100 TKQHVVDFVRKL 111 (111)
T ss_pred CHHHHHHHHhcC
Confidence 999999999864
No 16
>PRK09381 trxA thioredoxin; Provisional
Probab=99.77 E-value=7e-18 Score=129.80 Aligned_cols=91 Identities=26% Similarity=0.621 Sum_probs=84.2
Q ss_pred hcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCC
Q 024784 136 LTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGR 215 (262)
Q Consensus 136 ~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~ 215 (262)
+..+++++|+||++||++|+.+.|.+.++++++.+++.++.+|+|... .++++|++.++||++++ ++|+++.++.|.
T Consensus 18 ~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~-~~G~~~~~~~G~ 94 (109)
T PRK09381 18 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP--GTAPKYGIRGIPTLLLF-KNGEVAATKVGA 94 (109)
T ss_pred hcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh--hHHHhCCCCcCCEEEEE-eCCeEEEEecCC
Confidence 456889999999999999999999999999999888899999998765 88999999999999999 799999999999
Q ss_pred CCHHHHHHHHHHHh
Q 024784 216 LPRQYLLENVDALA 229 (262)
Q Consensus 216 ~~~e~l~~~l~~l~ 229 (262)
.+.+++.++|+..+
T Consensus 95 ~~~~~l~~~i~~~~ 108 (109)
T PRK09381 95 LSKGQLKEFLDANL 108 (109)
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999998875
No 17
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.77 E-value=2.9e-18 Score=133.71 Aligned_cols=94 Identities=17% Similarity=0.206 Sum_probs=81.8
Q ss_pred ccchHHH---hcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHH-HHcCCCCccEEEEEcC
Q 024784 129 ALPYEQA---LTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQEL-DEFGVEGIPHFAFLDR 204 (262)
Q Consensus 129 ~~~l~~~---~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~-~~~gi~~~Pt~vliD~ 204 (262)
..+++++ ..+++++||+|||+||++|+.+.|.+.++++.+++.+.|+.||+|... .++ ++|+|.++||++++ +
T Consensus 16 ~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~--~l~~~~~~I~~~PTl~lf-~ 92 (113)
T cd03006 16 KGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ--GKCRKQKHFFYFPVIHLY-Y 92 (113)
T ss_pred hhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh--HHHHHhcCCcccCEEEEE-E
Confidence 3344443 568999999999999999999999999999999887888999988665 788 58999999999999 8
Q ss_pred CCeEEEEEeCCCCHHHHHHHH
Q 024784 205 EGNEEGNVVGRLPRQYLLENV 225 (262)
Q Consensus 205 ~Gkiv~~~~G~~~~e~l~~~l 225 (262)
+|+...++.|..+.+.|..++
T Consensus 93 ~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 93 RSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred CCccceEEeCCCCHHHHHhhC
Confidence 999989999999999888763
No 18
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.1e-18 Score=131.92 Aligned_cols=87 Identities=33% Similarity=0.691 Sum_probs=79.1
Q ss_pred cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCC
Q 024784 137 TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRL 216 (262)
Q Consensus 137 ~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~ 216 (262)
..+++++|+|||+||++|+.+.|.+.+++.+|.+ +.|+.||+|+ +.++++.|+|..+||++++ ++|+.+.++.|..
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde--~~~~~~~~~V~~~PTf~f~-k~g~~~~~~vGa~ 94 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE--LEEVAKEFNVKAMPTFVFY-KGGEEVDEVVGAN 94 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc--CHhHHHhcCceEeeEEEEE-ECCEEEEEEecCC
Confidence 4579999999999999999999999999999999 9999999999 7899999999999999999 9999999999955
Q ss_pred CHHHHHHHHHHH
Q 024784 217 PRQYLLENVDAL 228 (262)
Q Consensus 217 ~~e~l~~~l~~l 228 (262)
. +++++.|+++
T Consensus 95 ~-~~l~~~i~~~ 105 (106)
T KOG0907|consen 95 K-AELEKKIAKH 105 (106)
T ss_pred H-HHHHHHHHhc
Confidence 5 4677776653
No 19
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.77 E-value=2.8e-18 Score=130.89 Aligned_cols=85 Identities=16% Similarity=0.332 Sum_probs=74.6
Q ss_pred cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCC
Q 024784 137 TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRL 216 (262)
Q Consensus 137 ~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~ 216 (262)
.+|++++|+|||+||++|+.++|.+.++++++++ +.++.||.+. +...++++|+|.++||+++| ++| .+.++.|..
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf-~~g-~~~~~~G~~ 91 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESS-IKPSLLSRYGVVGFPTILLF-NST-PRVRYNGTR 91 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCC-CCHHHHHhcCCeecCEEEEE-cCC-ceeEecCCC
Confidence 4799999999999999999999999999999976 7788887762 23589999999999999999 567 788999999
Q ss_pred CHHHHHHHH
Q 024784 217 PRQYLLENV 225 (262)
Q Consensus 217 ~~e~l~~~l 225 (262)
+.+.|.++|
T Consensus 92 ~~~~l~~f~ 100 (100)
T cd02999 92 TLDSLAAFY 100 (100)
T ss_pred CHHHHHhhC
Confidence 999888764
No 20
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.77 E-value=5.9e-18 Score=162.01 Aligned_cols=107 Identities=18% Similarity=0.335 Sum_probs=90.2
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccC---------------
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDN--------------- 181 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~--------------- 181 (262)
+.+.+.+.+|+...++ +||+|||+|||+||++|+.++|.|++++++++++ +.|+.|+++.
T Consensus 39 P~f~l~D~dG~~v~ls----kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~ 114 (521)
T PRK14018 39 STLKTADNRPASVYLK----KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYA 114 (521)
T ss_pred CCeEeecCCCceeecc----CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHH
Confidence 3467778888776554 7999999999999999999999999999999743 8888886521
Q ss_pred -----------CchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHH
Q 024784 182 -----------TKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVDAL 228 (262)
Q Consensus 182 -----------~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l 228 (262)
+...++++.|+|.++||++|||++|+++.++.|..+.++|.++|+..
T Consensus 115 ~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 115 GLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred hCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 12246778999999999999999999999999999999999999843
No 21
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.77 E-value=1.2e-17 Score=139.33 Aligned_cols=110 Identities=22% Similarity=0.350 Sum_probs=89.5
Q ss_pred cccccccccccccchH-HHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc-------------
Q 024784 118 FGVSLKDLSAAALPYE-QALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK------------- 183 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~-~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~------------- 183 (262)
+.|++++.+|+...+. +...+||+++|+||++||++|++++|.++++.++ ++.+++|+.+...
T Consensus 41 p~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~ 117 (173)
T TIGR00385 41 PAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNP 117 (173)
T ss_pred CCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCC
Confidence 4478888888744443 3334789999999999999999999999988753 3788999875431
Q ss_pred --------hHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHhC
Q 024784 184 --------WEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVDALAH 230 (262)
Q Consensus 184 --------~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~~ 230 (262)
..++.+.|++.++|+++++|++|++++++.|..+.++++++|+++++
T Consensus 118 f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 118 YQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 12445678999999999999999999999999999999999999874
No 22
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.76 E-value=1.4e-17 Score=136.46 Aligned_cols=91 Identities=16% Similarity=0.281 Sum_probs=74.8
Q ss_pred cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc----------hHHHH-HHc---CCCCccEEEEE
Q 024784 137 TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK----------WEQEL-DEF---GVEGIPHFAFL 202 (262)
Q Consensus 137 ~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~----------~~~l~-~~~---gi~~~Pt~vli 202 (262)
..++..+|+||++||++|++++|.|++++++++ +.++.|++|... ..... +.| ++.++||++++
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 346778999999999999999999999999985 678888888642 12333 345 88999999999
Q ss_pred cCCCeE-EEEEeCCCCHHHHHHHHHHHh
Q 024784 203 DREGNE-EGNVVGRLPRQYLLENVDALA 229 (262)
Q Consensus 203 D~~Gki-v~~~~G~~~~e~l~~~l~~l~ 229 (262)
|++|++ +.++.|..+.+++.+.|++++
T Consensus 126 D~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred eCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 999886 557899999999999988764
No 23
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.76 E-value=1.2e-17 Score=144.83 Aligned_cols=103 Identities=21% Similarity=0.361 Sum_probs=87.6
Q ss_pred cccchHHHhc-----CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEE
Q 024784 128 AALPYEQALT-----NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFL 202 (262)
Q Consensus 128 ~~~~l~~~~~-----~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vli 202 (262)
+..++++... .+++++|+||++||++|+.+.|.++++++++++.+.+..+|++.. .+++++|+|.++||++++
T Consensus 36 t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~--~~l~~~~~I~~~PTl~~f 113 (224)
T PTZ00443 36 NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA--LNLAKRFAIKGYPTLLLF 113 (224)
T ss_pred CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc--HHHHHHcCCCcCCEEEEE
Confidence 3445665543 258999999999999999999999999999998778887777755 489999999999999999
Q ss_pred cCCCeEEEEEeCCCCHHHHHHHHHHHhCCCC
Q 024784 203 DREGNEEGNVVGRLPRQYLLENVDALAHGKA 233 (262)
Q Consensus 203 D~~Gkiv~~~~G~~~~e~l~~~l~~l~~~~~ 233 (262)
.+|+++....|..+.++|.+++++......
T Consensus 114 -~~G~~v~~~~G~~s~e~L~~fi~~~~~~~~ 143 (224)
T PTZ00443 114 -DKGKMYQYEGGDRSTEKLAAFALGDFKKAL 143 (224)
T ss_pred -ECCEEEEeeCCCCCHHHHHHHHHHHHHhhc
Confidence 589999888899999999999999886443
No 24
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.75 E-value=1.1e-17 Score=127.54 Aligned_cols=93 Identities=16% Similarity=0.409 Sum_probs=79.8
Q ss_pred chHHHh-cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEE
Q 024784 131 PYEQAL-TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 131 ~l~~~~-~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv 209 (262)
++++.+ ..+++++|+||++||++|+.+.|.+.++.+++.+.+.++.||++... +++++|+|.++||+++++.+|+.+
T Consensus 10 ~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~i~~~Pt~~~~~~g~~~~ 87 (104)
T cd03004 10 DFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYE--SLCQQANIRAYPTIRLYPGNASKY 87 (104)
T ss_pred HHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH--HHHHHcCCCcccEEEEEcCCCCCc
Confidence 455443 45789999999999999999999999999999877889999888754 899999999999999995555999
Q ss_pred EEEeCCCC-HHHHHHHH
Q 024784 210 GNVVGRLP-RQYLLENV 225 (262)
Q Consensus 210 ~~~~G~~~-~e~l~~~l 225 (262)
.++.|..+ .++|.++|
T Consensus 88 ~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 88 HSYNGWHRDADSILEFI 104 (104)
T ss_pred eEccCCCCCHHHHHhhC
Confidence 99999887 88887764
No 25
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.75 E-value=1.3e-17 Score=131.21 Aligned_cols=98 Identities=12% Similarity=0.154 Sum_probs=85.6
Q ss_pred ccchHHHh-cCCCcEEEEEEcCCChh--hH--hhhHHHHHHHHHh--cCcceEEEEEccCCchHHHHHHcCCCCccEEEE
Q 024784 129 ALPYEQAL-TNGKPTVLEFYADWCEV--CR--ELAPDVYRVEQQY--KDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAF 201 (262)
Q Consensus 129 ~~~l~~~~-~~~k~vlV~F~a~wC~~--C~--~~~p~L~~l~~~~--~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vl 201 (262)
..++++.+ +++.++|++||++||++ |+ .+.|.+.+++.++ .+++.|+.||+|... +++++|||.++||+++
T Consensus 16 ~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~--~La~~~~I~~iPTl~l 93 (120)
T cd03065 16 EKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA--KVAKKLGLDEEDSIYV 93 (120)
T ss_pred hhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH--HHHHHcCCccccEEEE
Confidence 34566554 45668999999999987 99 8889999999998 767999999999775 9999999999999999
Q ss_pred EcCCCeEEEEEeCCCCHHHHHHHHHHHhC
Q 024784 202 LDREGNEEGNVVGRLPRQYLLENVDALAH 230 (262)
Q Consensus 202 iD~~Gkiv~~~~G~~~~e~l~~~l~~l~~ 230 (262)
| ++|+++. +.|..+.+.|.++|++++.
T Consensus 94 f-k~G~~v~-~~G~~~~~~l~~~l~~~~~ 120 (120)
T cd03065 94 F-KDDEVIE-YDGEFAADTLVEFLLDLIE 120 (120)
T ss_pred E-ECCEEEE-eeCCCCHHHHHHHHHHHhC
Confidence 9 8999987 9999999999999998863
No 26
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.74 E-value=2.1e-17 Score=124.94 Aligned_cols=89 Identities=18% Similarity=0.393 Sum_probs=80.9
Q ss_pred HhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeC
Q 024784 135 ALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVG 214 (262)
Q Consensus 135 ~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G 214 (262)
+.+.+++++|+||++||+.|+.+.+.+.++.+++.+++.++.+|+|... +++++|+|.++|+++++ ++|+++.++.|
T Consensus 9 ~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~--~l~~~~~v~~vPt~~i~-~~g~~v~~~~g 85 (97)
T cd02949 9 YHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ--EIAEAAGIMGTPTVQFF-KDKELVKEISG 85 (97)
T ss_pred HHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH--HHHHHCCCeeccEEEEE-ECCeEEEEEeC
Confidence 3457899999999999999999999999999999877888888888765 89999999999999999 68999999999
Q ss_pred CCCHHHHHHHHH
Q 024784 215 RLPRQYLLENVD 226 (262)
Q Consensus 215 ~~~~e~l~~~l~ 226 (262)
..+.++|.++|+
T Consensus 86 ~~~~~~~~~~l~ 97 (97)
T cd02949 86 VKMKSEYREFIE 97 (97)
T ss_pred CccHHHHHHhhC
Confidence 999999988874
No 27
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.74 E-value=1.9e-17 Score=133.55 Aligned_cols=99 Identities=16% Similarity=0.263 Sum_probs=86.8
Q ss_pred chHHHh--cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEE-EEcCCCe
Q 024784 131 PYEQAL--TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFA-FLDREGN 207 (262)
Q Consensus 131 ~l~~~~--~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~v-liD~~Gk 207 (262)
.+++++ .+++++||+|||+||++|+.+.|.|.++++++++.+.|+.||+|+.+ +++..|+|.+.|+++ |+ ++|+
T Consensus 13 e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~--dla~~y~I~~~~t~~~ff-k~g~ 89 (142)
T PLN00410 13 AVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVP--DFNTMYELYDPCTVMFFF-RNKH 89 (142)
T ss_pred HHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCH--HHHHHcCccCCCcEEEEE-ECCe
Confidence 344444 36889999999999999999999999999999988889999999776 999999999887777 66 8999
Q ss_pred -EEEEEeC--------CCCHHHHHHHHHHHhCCC
Q 024784 208 -EEGNVVG--------RLPRQYLLENVDALAHGK 232 (262)
Q Consensus 208 -iv~~~~G--------~~~~e~l~~~l~~l~~~~ 232 (262)
.+.+..| ..+.++|.+.++.++.|-
T Consensus 90 ~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 90 IMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred EEEEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence 8899989 678899999999998765
No 28
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.74 E-value=2.1e-17 Score=125.30 Aligned_cols=94 Identities=19% Similarity=0.506 Sum_probs=82.4
Q ss_pred chHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhc--CcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeE
Q 024784 131 PYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYK--DRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNE 208 (262)
Q Consensus 131 ~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~--~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gki 208 (262)
.+++.+.++++++|+||++||++|+.+.|.++++.+.+. +.+.++.+|++...+..++++|+|.++||++++ ++|++
T Consensus 9 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~-~~g~~ 87 (104)
T cd02997 9 DFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYF-ENGKF 87 (104)
T ss_pred hHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEE-eCCCe
Confidence 566677788899999999999999999999999999887 447788888887556799999999999999888 78999
Q ss_pred EEEEeCCCCHHHHHHHH
Q 024784 209 EGNVVGRLPRQYLLENV 225 (262)
Q Consensus 209 v~~~~G~~~~e~l~~~l 225 (262)
+.++.|..+.+.+.++|
T Consensus 88 ~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 88 VEKYEGERTAEDIIEFM 104 (104)
T ss_pred eEEeCCCCCHHHHHhhC
Confidence 99999999999887764
No 29
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=8.5e-18 Score=148.46 Aligned_cols=92 Identities=24% Similarity=0.577 Sum_probs=87.5
Q ss_pred cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCC
Q 024784 137 TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRL 216 (262)
Q Consensus 137 ~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~ 216 (262)
+..+||||+||++||++|+.+.|.|.++..+|++++.+..||+|... .++..|||+++||++.| ++|+.|.-+.|..
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p--~vAaqfgiqsIPtV~af-~dGqpVdgF~G~q 117 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEP--MVAAQFGVQSIPTVYAF-KDGQPVDGFQGAQ 117 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcch--hHHHHhCcCcCCeEEEe-eCCcCccccCCCC
Confidence 35679999999999999999999999999999999999999999887 99999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHhCC
Q 024784 217 PRQYLLENVDALAHG 231 (262)
Q Consensus 217 ~~e~l~~~l~~l~~~ 231 (262)
+++.+++||++++..
T Consensus 118 Pesqlr~~ld~~~~~ 132 (304)
T COG3118 118 PESQLRQFLDKVLPA 132 (304)
T ss_pred cHHHHHHHHHHhcCh
Confidence 999999999998875
No 30
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.73 E-value=3.9e-17 Score=126.36 Aligned_cols=93 Identities=18% Similarity=0.228 Sum_probs=84.3
Q ss_pred cccchHHHhcCCCcEEEEEEcCC--ChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCC
Q 024784 128 AALPYEQALTNGKPTVLEFYADW--CEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDRE 205 (262)
Q Consensus 128 ~~~~l~~~~~~~k~vlV~F~a~w--C~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~ 205 (262)
+..++++..+.|.+++|+||++| ||+|+.+.|.|.+++++|++.+.|+.+|+|... +++.+|+|.++||+++| ++
T Consensus 16 ~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~--~la~~f~V~sIPTli~f-kd 92 (111)
T cd02965 16 DAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ--ALAARFGVLRTPALLFF-RD 92 (111)
T ss_pred ccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH--HHHHHcCCCcCCEEEEE-EC
Confidence 34456677778899999999997 999999999999999999988889999999876 99999999999999999 99
Q ss_pred CeEEEEEeCCCCHHHHHH
Q 024784 206 GNEEGNVVGRLPRQYLLE 223 (262)
Q Consensus 206 Gkiv~~~~G~~~~e~l~~ 223 (262)
|+++.++.|..+.+++..
T Consensus 93 Gk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 93 GRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred CEEEEEEeCccCHHHHhh
Confidence 999999999999888753
No 31
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.73 E-value=7.2e-17 Score=136.72 Aligned_cols=117 Identities=24% Similarity=0.308 Sum_probs=94.0
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc--------------
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK-------------- 183 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~-------------- 183 (262)
+.|++++.+|+.+.+.+...+||+++|+||++||++|+.+.|.+.+++++++ +.++.|+.|..+
T Consensus 53 P~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~ 130 (189)
T TIGR02661 53 PIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGE 130 (189)
T ss_pred CCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcc
Confidence 3488888999888876544579999999999999999999999999987764 567777643211
Q ss_pred ----hHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHhCCCCCCCc
Q 024784 184 ----WEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVDALAHGKASIPH 237 (262)
Q Consensus 184 ----~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~~~~~~~~~ 237 (262)
..++.+.|++..+|+.+++|++|+++++. .....+++++.++.+..|..|+++
T Consensus 131 ~~~~~~~i~~~y~v~~~P~~~lID~~G~I~~~g-~~~~~~~le~ll~~l~~~~~~~~~ 187 (189)
T TIGR02661 131 RYVVSAEIGMAFQVGKIPYGVLLDQDGKIRAKG-LTNTREHLESLLEADREGFASLQQ 187 (189)
T ss_pred eeechhHHHHhccCCccceEEEECCCCeEEEcc-CCCCHHHHHHHHHHHHcCcchhhh
Confidence 13566789999999999999999998863 235678999999999999888775
No 32
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.73 E-value=5.6e-17 Score=132.74 Aligned_cols=83 Identities=18% Similarity=0.401 Sum_probs=72.3
Q ss_pred chHHHh--cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCchHHHHHHcCCCC------ccEEEE
Q 024784 131 PYEQAL--TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTKWEQELDEFGVEG------IPHFAF 201 (262)
Q Consensus 131 ~l~~~~--~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~~~~l~~~~gi~~------~Pt~vl 201 (262)
++++.+ .++++++|+||++||++|+.+.|.+.++++++++. +.|+.||+|... +++++|+|.+ +||+++
T Consensus 37 ~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~--~la~~~~V~~~~~v~~~PT~il 114 (152)
T cd02962 37 TLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP--NVAEKFRVSTSPLSKQLPTIIL 114 (152)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH--HHHHHcCceecCCcCCCCEEEE
Confidence 455554 34679999999999999999999999999999754 899999998875 8999999988 999999
Q ss_pred EcCCCeEEEEEeCCC
Q 024784 202 LDREGNEEGNVVGRL 216 (262)
Q Consensus 202 iD~~Gkiv~~~~G~~ 216 (262)
+ ++|+++.++.|+.
T Consensus 115 f-~~Gk~v~r~~G~~ 128 (152)
T cd02962 115 F-QGGKEVARRPYYN 128 (152)
T ss_pred E-ECCEEEEEEeccc
Confidence 9 7999999999843
No 33
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.73 E-value=4e-17 Score=125.16 Aligned_cols=95 Identities=20% Similarity=0.496 Sum_probs=81.9
Q ss_pred chHHHh-cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCC---
Q 024784 131 PYEQAL-TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREG--- 206 (262)
Q Consensus 131 ~l~~~~-~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~G--- 206 (262)
++++.+ ..+++++|+||++||++|+.+.|.+.++++.+.+.+.++.+|+|.+++.+++++|+|.++||++++++++
T Consensus 9 ~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~ 88 (109)
T cd03002 9 NFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKAS 88 (109)
T ss_pred hHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCccc
Confidence 445443 4588899999999999999999999999999988789999999986667999999999999999996665
Q ss_pred -eEEEEEeCCCCHHHHHHHH
Q 024784 207 -NEEGNVVGRLPRQYLLENV 225 (262)
Q Consensus 207 -kiv~~~~G~~~~e~l~~~l 225 (262)
.....+.|..+.+.|.++|
T Consensus 89 ~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 89 KHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred ccccccccCccCHHHHHHHh
Confidence 3567788999999998886
No 34
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.72 E-value=5.4e-17 Score=128.08 Aligned_cols=102 Identities=26% Similarity=0.394 Sum_probs=81.4
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCC---------------
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNT--------------- 182 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~--------------- 182 (262)
+.|+++++++....++....+|++++|+||++||++|+.++|.|+++.++++ +.++.|+.+..
T Consensus 4 p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~ 81 (127)
T cd03010 4 PAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPY 81 (127)
T ss_pred CCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCC
Confidence 3577788877333333333469999999999999999999999999988863 78888886422
Q ss_pred ------chHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHH
Q 024784 183 ------KWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYL 221 (262)
Q Consensus 183 ------~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l 221 (262)
....+++.|++.++|+++++|++|+++.++.|..+.+.|
T Consensus 82 ~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 82 AAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred ceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 123667889999999999999999999999999987754
No 35
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.72 E-value=4.2e-17 Score=123.33 Aligned_cols=91 Identities=22% Similarity=0.554 Sum_probs=78.5
Q ss_pred chHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcC---cceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCe
Q 024784 131 PYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKD---RVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGN 207 (262)
Q Consensus 131 ~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~---~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gk 207 (262)
++.+.+.++ +++|+||++||++|+.+.|.+.++++++++ .+.++.+|.+... .++++|+|.++||++++ ++|+
T Consensus 9 ~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~-~~g~ 84 (102)
T cd03005 9 NFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR--ELCSEFQVRGYPTLLLF-KDGE 84 (102)
T ss_pred HHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh--hhHhhcCCCcCCEEEEE-eCCC
Confidence 455566555 599999999999999999999999999976 4788888877654 89999999999999999 7999
Q ss_pred EEEEEeCCCCHHHHHHHH
Q 024784 208 EEGNVVGRLPRQYLLENV 225 (262)
Q Consensus 208 iv~~~~G~~~~e~l~~~l 225 (262)
++.++.|..+.+.|.++|
T Consensus 85 ~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 85 KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eeeEeeCCCCHHHHHhhC
Confidence 999999999998887764
No 36
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.72 E-value=1.4e-16 Score=133.26 Aligned_cols=102 Identities=14% Similarity=0.176 Sum_probs=84.7
Q ss_pred cccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc-----------hHHHHHH
Q 024784 122 LKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK-----------WEQELDE 190 (262)
Q Consensus 122 l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~-----------~~~l~~~ 190 (262)
+...+|+.+++++.. ||+||++||++|++++|.|.+++++|+ +.++.|++|... ...+.+.
T Consensus 58 f~l~dG~~v~lsd~~------lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~ 129 (181)
T PRK13728 58 FRLSNGRQVNLADWK------VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTF 129 (181)
T ss_pred cCCCCCCEeehhHce------EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHH
Confidence 344467777766532 778999999999999999999999985 789999888541 2346778
Q ss_pred cCC--CCccEEEEEcCCCeEEE-EEeCCCCHHHHHHHHHHHhCC
Q 024784 191 FGV--EGIPHFAFLDREGNEEG-NVVGRLPRQYLLENVDALAHG 231 (262)
Q Consensus 191 ~gi--~~~Pt~vliD~~Gkiv~-~~~G~~~~e~l~~~l~~l~~~ 231 (262)
|++ .++|+++++|++|+++. .+.|..+.+++++.|+++++.
T Consensus 130 ~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 130 FPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred hCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 995 69999999999999974 799999999999999999876
No 37
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.72 E-value=4.4e-17 Score=125.31 Aligned_cols=93 Identities=22% Similarity=0.413 Sum_probs=78.6
Q ss_pred cchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcC------cceEEEEEccCCchHHHHHHcCCCCccEEEEEc
Q 024784 130 LPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKD------RVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLD 203 (262)
Q Consensus 130 ~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~------~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD 203 (262)
.++++.+..+++++|+||++||++|+.+.|.+.++++.+++ ++.++.||+|... +++++|+|.++||++++
T Consensus 9 ~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~--~l~~~~~v~~~Ptl~~~- 85 (108)
T cd02996 9 GNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES--DIADRYRINKYPTLKLF- 85 (108)
T ss_pred hhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHhCCCCcCCEEEEE-
Confidence 45667777889999999999999999999999999887632 3677777877654 89999999999999999
Q ss_pred CCCeE-EEEEeCCCCHHHHHHHH
Q 024784 204 REGNE-EGNVVGRLPRQYLLENV 225 (262)
Q Consensus 204 ~~Gki-v~~~~G~~~~e~l~~~l 225 (262)
++|++ ...+.|..+.+.|.++|
T Consensus 86 ~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 86 RNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred eCCcCcceecCCCCCHHHHHhhC
Confidence 89984 47788999999888764
No 38
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.72 E-value=9e-17 Score=121.84 Aligned_cols=92 Identities=22% Similarity=0.434 Sum_probs=78.0
Q ss_pred cchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeE
Q 024784 130 LPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNE 208 (262)
Q Consensus 130 ~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gki 208 (262)
.++++.+ +++ ++|+||++||++|+.+.|.+.++++.+++. +.+..+|++... .++++|+|.++||++++ ++|++
T Consensus 9 ~~f~~~~-~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~--~~~~~~~i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 9 SNWTLVL-EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP--GLSGRFFVTALPTIYHA-KDGVF 83 (101)
T ss_pred hhHHHHh-CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH--hHHHHcCCcccCEEEEe-CCCCE
Confidence 3555555 454 789999999999999999999999988653 888888888654 89999999999999998 89985
Q ss_pred EEEEeCCCCHHHHHHHHHH
Q 024784 209 EGNVVGRLPRQYLLENVDA 227 (262)
Q Consensus 209 v~~~~G~~~~e~l~~~l~~ 227 (262)
.++.|..+.++|.++|++
T Consensus 84 -~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 84 -RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred -EEecCCCCHHHHHHHHhC
Confidence 788999999999988863
No 39
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.71 E-value=9.2e-17 Score=121.05 Aligned_cols=95 Identities=22% Similarity=0.518 Sum_probs=82.1
Q ss_pred chHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcC--cceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeE
Q 024784 131 PYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKD--RVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNE 208 (262)
Q Consensus 131 ~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~--~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gki 208 (262)
++.+.+.++++++|+||++||+.|+.+.+.+.++++.+++ ++.++.+|.+.. ..++++|+|.++|+++++++++.
T Consensus 5 ~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~i~~~P~~~~~~~~~~- 81 (102)
T TIGR01126 5 NFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE--KDLASRFGVSGFPTIKFFPKGKK- 81 (102)
T ss_pred hHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch--HHHHHhCCCCcCCEEEEecCCCc-
Confidence 4566666899999999999999999999999999999987 477777777665 48999999999999999966665
Q ss_pred EEEEeCCCCHHHHHHHHHHH
Q 024784 209 EGNVVGRLPRQYLLENVDAL 228 (262)
Q Consensus 209 v~~~~G~~~~e~l~~~l~~l 228 (262)
+..+.|..+.++|.++|++.
T Consensus 82 ~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 82 PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred ceeecCCCCHHHHHHHHHhc
Confidence 77899999999999999875
No 40
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.71 E-value=8.8e-17 Score=140.34 Aligned_cols=112 Identities=12% Similarity=0.175 Sum_probs=92.5
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccC------Cc---hHHH
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDN------TK---WEQE 187 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~------~~---~~~l 187 (262)
+.+++++.+|+.+.+.+. +||++||+||++||++|..++|.|++++++|+++ +.+++|+.|. .. ..++
T Consensus 80 PdF~l~d~~G~~vsLsd~--kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f 157 (236)
T PLN02399 80 HDFTVKDIDGKDVALSKF--KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQF 157 (236)
T ss_pred CceEEECCCCCEEeHHHh--CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHH
Confidence 468889999998888874 6899999999999999999999999999999877 9999999752 11 1232
Q ss_pred H-HHcC----------------------------------CCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHhCC
Q 024784 188 L-DEFG----------------------------------VEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVDALAHG 231 (262)
Q Consensus 188 ~-~~~g----------------------------------i~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~~~ 231 (262)
+ ++++ +...|+++|||++|++++++.|..+.+++++.|++++++
T Consensus 158 ~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~~ 236 (236)
T PLN02399 158 ACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLAA 236 (236)
T ss_pred HHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhcC
Confidence 2 2221 123599999999999999999999999999999999863
No 41
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.71 E-value=1.5e-16 Score=119.38 Aligned_cols=89 Identities=30% Similarity=0.696 Sum_probs=81.4
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCC
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLP 217 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~ 217 (262)
.+++++|+||++||++|+.+.+.+.++.+++++++.|+.+|.+... +++++|+|.++|+++++ .+|+++.++.|..+
T Consensus 13 ~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~P~~~~~-~~g~~~~~~~g~~~ 89 (101)
T TIGR01068 13 SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP--DIAAKYGIRSIPTLLLF-KNGKEVDRSVGALP 89 (101)
T ss_pred cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH--HHHHHcCCCcCCEEEEE-eCCcEeeeecCCCC
Confidence 4679999999999999999999999999999877999999988765 89999999999999999 79999999999999
Q ss_pred HHHHHHHHHHHh
Q 024784 218 RQYLLENVDALA 229 (262)
Q Consensus 218 ~e~l~~~l~~l~ 229 (262)
.+++.++|++.+
T Consensus 90 ~~~l~~~l~~~~ 101 (101)
T TIGR01068 90 KAALKQLINKNL 101 (101)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 42
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.71 E-value=9.1e-17 Score=137.24 Aligned_cols=113 Identities=13% Similarity=0.202 Sum_probs=92.8
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccC------C---chHHH
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDN------T---KWEQE 187 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~------~---~~~~l 187 (262)
+.+++.+++|+.+++++. +||++||+||++||++|+.++|.|++++++|.++ +.|++|++|. . ...++
T Consensus 20 pdf~l~d~~G~~vsL~~~--kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f 97 (199)
T PTZ00056 20 YDYTVKTLEGTTVPMSSL--KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKF 97 (199)
T ss_pred CceEEECCCCCEEeHHHh--CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHH
Confidence 368888999998888874 6899999999999999999999999999999876 9999998742 1 22344
Q ss_pred HHHcCC------------------------------------CCcc---EEEEEcCCCeEEEEEeCCCCHHHHHHHHHHH
Q 024784 188 LDEFGV------------------------------------EGIP---HFAFLDREGNEEGNVVGRLPRQYLLENVDAL 228 (262)
Q Consensus 188 ~~~~gi------------------------------------~~~P---t~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l 228 (262)
++++++ ..+| +++|||++|+++.++.|..+.+++.+.|+++
T Consensus 98 ~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~l 177 (199)
T PTZ00056 98 NDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAEL 177 (199)
T ss_pred HHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 444433 1122 7999999999999999999999999999999
Q ss_pred hCCC
Q 024784 229 AHGK 232 (262)
Q Consensus 229 ~~~~ 232 (262)
++.+
T Consensus 178 l~~~ 181 (199)
T PTZ00056 178 LGVK 181 (199)
T ss_pred HHHH
Confidence 8765
No 43
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.69 E-value=8e-17 Score=124.18 Aligned_cols=89 Identities=30% Similarity=0.672 Sum_probs=71.2
Q ss_pred cCCCcEEEEEEcCCChhhHhhhHHHHH---HHHHhcCcceEEEEEccCCc------------------hHHHHHHcCCCC
Q 024784 137 TNGKPTVLEFYADWCEVCRELAPDVYR---VEQQYKDRVNFVMLNVDNTK------------------WEQELDEFGVEG 195 (262)
Q Consensus 137 ~~~k~vlV~F~a~wC~~C~~~~p~L~~---l~~~~~~~v~~v~V~vD~~~------------------~~~l~~~~gi~~ 195 (262)
.++|+++|+||++||++|+++.+.+.+ +.+.+.+++.++.++++... ..++++.|||.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 478999999999999999999999986 44455556889999998643 246889999999
Q ss_pred ccEEEEEcCCCeEEEEEeCCCCHHHHHHHH
Q 024784 196 IPHFAFLDREGNEEGNVVGRLPRQYLLENV 225 (262)
Q Consensus 196 ~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l 225 (262)
+||++++|++|+++.++.|..+.++|.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999999999999999999999998875
No 44
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.69 E-value=2.7e-16 Score=118.03 Aligned_cols=90 Identities=24% Similarity=0.503 Sum_probs=74.5
Q ss_pred hHHHhcC--CCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEE
Q 024784 132 YEQALTN--GKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 132 l~~~~~~--~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv 209 (262)
+++++.. +++++|+||++||++|+.+.+.|.++.+++...+.++.+|.+... +++++|++.++||++++ .+|+++
T Consensus 5 ~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~--~~~~~~~i~~~Pt~~~~-~~g~~~ 81 (97)
T cd02984 5 FEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP--EISEKFEITAVPTFVFF-RNGTIV 81 (97)
T ss_pred HHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH--HHHHhcCCccccEEEEE-ECCEEE
Confidence 3444433 599999999999999999999999999997555888888877554 89999999999999999 699999
Q ss_pred EEEeCCCCHHHHHHHH
Q 024784 210 GNVVGRLPRQYLLENV 225 (262)
Q Consensus 210 ~~~~G~~~~e~l~~~l 225 (262)
.++.|. ..++|.+.|
T Consensus 82 ~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 82 DRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEeCC-CHHHHHHhh
Confidence 999995 456666554
No 45
>PLN02412 probable glutathione peroxidase
Probab=99.69 E-value=3.9e-16 Score=129.75 Aligned_cols=112 Identities=13% Similarity=0.192 Sum_probs=92.4
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccC------CchHHH---
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDN------TKWEQE--- 187 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~------~~~~~l--- 187 (262)
+.+++++.+|+.+++++. +||++||+||++||++|+.++|.|++++++|+++ +.+++|+.|. ...+++
T Consensus 10 pdf~l~d~~G~~v~l~~~--~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~ 87 (167)
T PLN02412 10 YDFTVKDIGGNDVSLNQY--KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQT 87 (167)
T ss_pred CceEEECCCCCEEeHHHh--CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHH
Confidence 368889999998888764 6899999999999999999999999999999977 9999998753 121122
Q ss_pred -HHHcC----------------------------------CCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHhCC
Q 024784 188 -LDEFG----------------------------------VEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVDALAHG 231 (262)
Q Consensus 188 -~~~~g----------------------------------i~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~~~ 231 (262)
+++++ +...|++++||++|++++++.|..+.+++.+.|+++++.
T Consensus 88 ~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 88 VCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred HHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 22211 344689999999999999999999999999999998863
No 46
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.69 E-value=3.3e-16 Score=119.69 Aligned_cols=92 Identities=24% Similarity=0.452 Sum_probs=76.1
Q ss_pred hHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcC---cceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeE
Q 024784 132 YEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKD---RVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNE 208 (262)
Q Consensus 132 l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~---~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gki 208 (262)
+++. .++++++|+||++||++|+.+.|.|.++++++++ .+.+..+|++.. ..++++|+|.++||++++ .+| .
T Consensus 9 ~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~I~~~Pt~~l~-~~~-~ 83 (104)
T cd03000 9 FKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY--SSIASEFGVRGYPTIKLL-KGD-L 83 (104)
T ss_pred hhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC--HhHHhhcCCccccEEEEE-cCC-C
Confidence 4443 4577999999999999999999999999999854 266666776654 489999999999999999 455 4
Q ss_pred EEEEeCCCCHHHHHHHHHHH
Q 024784 209 EGNVVGRLPRQYLLENVDAL 228 (262)
Q Consensus 209 v~~~~G~~~~e~l~~~l~~l 228 (262)
+.++.|..+.++|.++++++
T Consensus 84 ~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 84 AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred ceeecCCCCHHHHHHHHHhh
Confidence 56788999999999999875
No 47
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.68 E-value=2.7e-16 Score=124.87 Aligned_cols=88 Identities=26% Similarity=0.510 Sum_probs=74.5
Q ss_pred cccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcC---cceEEEEEccCCch--------------
Q 024784 122 LKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKD---RVNFVMLNVDNTKW-------------- 184 (262)
Q Consensus 122 l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~---~v~~v~V~vD~~~~-------------- 184 (262)
+.+.+|+.+.+.+. +||++||+||++||++|+.++|.|.++++++.+ .+.++.|++|....
T Consensus 3 l~~~~G~~v~l~~~--~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 3 LLRNDGGKVPVSSL--EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred ccccCCCCccHHHh--CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 35677888888764 689999999999999999999999999988863 37899999886521
Q ss_pred --------HHHHHHcCCCCccEEEEEcCCCeEEEE
Q 024784 185 --------EQELDEFGVEGIPHFAFLDREGNEEGN 211 (262)
Q Consensus 185 --------~~l~~~~gi~~~Pt~vliD~~Gkiv~~ 211 (262)
..+++.|+|.++|++++||++|+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTT 115 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcc
Confidence 356789999999999999999999875
No 48
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.68 E-value=2.8e-16 Score=126.81 Aligned_cols=98 Identities=33% Similarity=0.603 Sum_probs=84.4
Q ss_pred ccccccc--ccccccchHHHhcCCCcEEEEEEcC-CChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCch---------
Q 024784 118 FGVSLKD--LSAAALPYEQALTNGKPTVLEFYAD-WCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTKW--------- 184 (262)
Q Consensus 118 ~~~~l~~--~~g~~~~l~~~~~~~k~vlV~F~a~-wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~~--------- 184 (262)
+.+++++ .+|+..++++ .+||++||+||++ ||++|+.++|.+.++++.|+++ +.++.|+.+....
T Consensus 7 P~~~~~~~~~~g~~~~l~~--~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~ 84 (146)
T PF08534_consen 7 PDFSLKDLDLDGKPVSLSD--FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYG 84 (146)
T ss_dssp -CCEEEEEETTSEEEEGGG--GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTT
T ss_pred CCeEEEeecCCCCEecHHH--hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhC
Confidence 3566654 8889988887 5899999999999 9999999999999999998877 9999999886532
Q ss_pred ----------HHHHHHcCCC---------CccEEEEEcCCCeEEEEEeCCCC
Q 024784 185 ----------EQELDEFGVE---------GIPHFAFLDREGNEEGNVVGRLP 217 (262)
Q Consensus 185 ----------~~l~~~~gi~---------~~Pt~vliD~~Gkiv~~~~G~~~ 217 (262)
.++.++|++. ++|++++||++|++++...|..+
T Consensus 85 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 85 INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 3566788988 99999999999999999999877
No 49
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.67 E-value=3e-16 Score=127.52 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=64.5
Q ss_pred cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcC--------cceEEEEEccCCch-----------------------H
Q 024784 137 TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKD--------RVNFVMLNVDNTKW-----------------------E 185 (262)
Q Consensus 137 ~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~--------~v~~v~V~vD~~~~-----------------------~ 185 (262)
.+||+++|+|||+||++|++++|.|.++++++.+ ++.+++|+.|.+.. .
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~ 102 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR 102 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH
Confidence 3799999999999999999999999998886653 38999999885421 2
Q ss_pred HHHHHcCCCCccEEEEEcCCCeEEEE
Q 024784 186 QELDEFGVEGIPHFAFLDREGNEEGN 211 (262)
Q Consensus 186 ~l~~~~gi~~~Pt~vliD~~Gkiv~~ 211 (262)
.+.++|++.++||++++|++|+++.+
T Consensus 103 ~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 103 ELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHcCCCCCCEEEEECCCCcEEee
Confidence 56678999999999999999999876
No 50
>PTZ00051 thioredoxin; Provisional
Probab=99.67 E-value=4.6e-16 Score=117.11 Aligned_cols=87 Identities=23% Similarity=0.595 Sum_probs=75.3
Q ss_pred chHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEE
Q 024784 131 PYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEG 210 (262)
Q Consensus 131 ~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~ 210 (262)
.+.+++..+++++|+||++||++|+.+.+.+.++++++.+ +.++.+|.+.. ..++++|+|.++||++++ ++|+++.
T Consensus 10 ~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~-~~g~~~~ 85 (98)
T PTZ00051 10 EFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDEL--SEVAEKENITSMPTFKVF-KNGSVVD 85 (98)
T ss_pred HHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcch--HHHHHHCCCceeeEEEEE-eCCeEEE
Confidence 4566677899999999999999999999999999998865 78888888754 489999999999999888 8999999
Q ss_pred EEeCCCCHHHHH
Q 024784 211 NVVGRLPRQYLL 222 (262)
Q Consensus 211 ~~~G~~~~e~l~ 222 (262)
++.|. ..++|.
T Consensus 86 ~~~G~-~~~~~~ 96 (98)
T PTZ00051 86 TLLGA-NDEALK 96 (98)
T ss_pred EEeCC-CHHHhh
Confidence 99996 555554
No 51
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.67 E-value=9.3e-17 Score=125.97 Aligned_cols=99 Identities=28% Similarity=0.556 Sum_probs=78.6
Q ss_pred chHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCC--ccEEEEEcCCCeE
Q 024784 131 PYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEG--IPHFAFLDREGNE 208 (262)
Q Consensus 131 ~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~--~Pt~vliD~~Gki 208 (262)
.++.+..++|++||+|||+||++|+.+.|.+.+..+.......|+.+++|... +.....|++.+ +||++|+|++|++
T Consensus 11 al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 11 GIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE-EPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred HHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC-CchhhhcccCCCccceEEEECCCCCC
Confidence 45566678999999999999999999999999977655444578888888654 23557889886 9999999999999
Q ss_pred EE---EEeCCCCHHHHHHHHHHHhC
Q 024784 209 EG---NVVGRLPRQYLLENVDALAH 230 (262)
Q Consensus 209 v~---~~~G~~~~e~l~~~l~~l~~ 230 (262)
+. ...|..+.+.+...|+.+.+
T Consensus 90 ~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 90 HPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred chhhccCCCCccccccCCCHHHHHh
Confidence 87 45677777777777777654
No 52
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.67 E-value=2.8e-16 Score=121.38 Aligned_cols=92 Identities=21% Similarity=0.362 Sum_probs=73.5
Q ss_pred ccccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCC-ch-------------
Q 024784 119 GVSLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNT-KW------------- 184 (262)
Q Consensus 119 ~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~-~~------------- 184 (262)
.+.+.+.+|+.+.+.+.. +||+++|+||++||++|+.++|.+.++++.+.+++.++.+.-+.. +.
T Consensus 2 ~f~l~~~~G~~~~l~~~~-~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p 80 (114)
T cd02967 2 TFDLTTIDGAPVRIGGIS-PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFP 80 (114)
T ss_pred CceeecCCCCEEEccccc-CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCc
Confidence 467778888888877653 589999999999999999999999999998877677776642211 11
Q ss_pred ----HHHHHHcCCCCccEEEEEcCCCeEEEE
Q 024784 185 ----EQELDEFGVEGIPHFAFLDREGNEEGN 211 (262)
Q Consensus 185 ----~~l~~~~gi~~~Pt~vliD~~Gkiv~~ 211 (262)
.++.+.|++.++|++++||++|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~P~~~vid~~G~v~~~ 111 (114)
T cd02967 81 YVLSAELGMAYQVSKLPYAVLLDEAGVIAAK 111 (114)
T ss_pred EEecHHHHhhcCCCCcCeEEEECCCCeEEec
Confidence 345567899999999999999999875
No 53
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.67 E-value=9.2e-16 Score=118.80 Aligned_cols=91 Identities=20% Similarity=0.301 Sum_probs=78.6
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeC---
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVG--- 214 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G--- 214 (262)
++|++||.||++||++|+.+.|.|.++++++++.+.|+.||+|+.+ ++++.|+|...||++++ ++|+-+..-.|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~--dva~~y~I~amPtfvff-kngkh~~~d~gt~~ 89 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVP--VYTQYFDISYIPSTIFF-FNGQHMKVDYGSPD 89 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccH--HHHHhcCceeCcEEEEE-ECCcEEEEecCCCC
Confidence 6999999999999999999999999999999876899999999776 99999999999999999 89988764333
Q ss_pred ------CC-CHHHHHHHHHHHhCC
Q 024784 215 ------RL-PRQYLLENVDALAHG 231 (262)
Q Consensus 215 ------~~-~~e~l~~~l~~l~~~ 231 (262)
.+ +.+++.+.++.+-.|
T Consensus 90 ~~k~~~~~~~k~~~idi~e~~yr~ 113 (114)
T cd02986 90 HTKFVGSFKTKQDFIDLIEVIYRG 113 (114)
T ss_pred CcEEEEEcCchhHHHHHHHHHHcC
Confidence 22 358899988877654
No 54
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.67 E-value=6.2e-16 Score=120.50 Aligned_cols=95 Identities=17% Similarity=0.335 Sum_probs=80.3
Q ss_pred HHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEE--
Q 024784 133 EQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEG-- 210 (262)
Q Consensus 133 ~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~-- 210 (262)
.+.+.+++.++|+||++||++|+.+.|.+.++.+.+ +.+.++.+|+|... +++++|+|.++||+++++ +|+...
T Consensus 16 ~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~--~l~~~~~v~~vPt~~i~~-~g~~~~~~ 91 (113)
T cd02975 16 FKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDK--EKAEKYGVERVPTTIFLQ-DGGKDGGI 91 (113)
T ss_pred HHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCH--HHHHHcCCCcCCEEEEEe-CCeecceE
Confidence 344567788999999999999999999999999887 45899999999754 999999999999999994 443333
Q ss_pred EEeCCCCHHHHHHHHHHHhCC
Q 024784 211 NVVGRLPRQYLLENVDALAHG 231 (262)
Q Consensus 211 ~~~G~~~~e~l~~~l~~l~~~ 231 (262)
++.|..+..+|.++|+.++..
T Consensus 92 ~~~G~~~~~el~~~i~~i~~~ 112 (113)
T cd02975 92 RYYGLPAGYEFASLIEDIVRV 112 (113)
T ss_pred EEEecCchHHHHHHHHHHHhc
Confidence 688989999999999998753
No 55
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.66 E-value=4.9e-16 Score=115.77 Aligned_cols=94 Identities=22% Similarity=0.506 Sum_probs=81.4
Q ss_pred cchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHh--cCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCe
Q 024784 130 LPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQY--KDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGN 207 (262)
Q Consensus 130 ~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~--~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gk 207 (262)
.++.+++.++++++|+||++||++|+.+.+.+.++.+.+ .+.+.++.+|.+.. ..++++|+|.++||+++++++|+
T Consensus 6 ~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~i~~~Pt~~~~~~~~~ 83 (101)
T cd02961 6 DNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN--NDLCSEYGVRGYPTIKLFPNGSK 83 (101)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch--HHHHHhCCCCCCCEEEEEcCCCc
Confidence 356677778889999999999999999999999999999 45588888888864 49999999999999999977778
Q ss_pred EEEEEeCCCCHHHHHHHH
Q 024784 208 EEGNVVGRLPRQYLLENV 225 (262)
Q Consensus 208 iv~~~~G~~~~e~l~~~l 225 (262)
.+.++.|..+.+++.+++
T Consensus 84 ~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 84 EPVKYEGPRTLESLVEFI 101 (101)
T ss_pred ccccCCCCcCHHHHHhhC
Confidence 888899988888887764
No 56
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.66 E-value=6.1e-16 Score=120.54 Aligned_cols=83 Identities=12% Similarity=0.297 Sum_probs=74.6
Q ss_pred cchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEE
Q 024784 130 LPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 130 ~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv 209 (262)
..+.+.+.++++++|+||++||++|+.+.|.|.++.+++.+ +.|+.||+|... +++++|+|.++||+++| ++|+++
T Consensus 13 ~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~--~l~~~~~v~~vPt~l~f-k~G~~v 88 (113)
T cd02989 13 KEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAP--FLVEKLNIKVLPTVILF-KNGKTV 88 (113)
T ss_pred HHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCH--HHHHHCCCccCCEEEEE-ECCEEE
Confidence 35666677889999999999999999999999999999876 899999999876 89999999999999999 899999
Q ss_pred EEEeCCC
Q 024784 210 GNVVGRL 216 (262)
Q Consensus 210 ~~~~G~~ 216 (262)
.++.|..
T Consensus 89 ~~~~g~~ 95 (113)
T cd02989 89 DRIVGFE 95 (113)
T ss_pred EEEECcc
Confidence 9988754
No 57
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.66 E-value=1.1e-15 Score=120.73 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=75.7
Q ss_pred chHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc---------hHHHHHHcC----CCCcc
Q 024784 131 PYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK---------WEQELDEFG----VEGIP 197 (262)
Q Consensus 131 ~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~---------~~~l~~~~g----i~~~P 197 (262)
.+.+.+.+++.++|+||++|||+|+.+.|.|.++.++.+ +.++.||+|.+. ..++.+.|+ |.++|
T Consensus 15 ~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~--~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~P 92 (122)
T TIGR01295 15 RALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTK--APIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTP 92 (122)
T ss_pred HHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcC--CcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCC
Confidence 456667789999999999999999999999999999843 679999998532 235667765 45699
Q ss_pred EEEEEcCCCeEEEEEeC-CCCHHHHHHHH
Q 024784 198 HFAFLDREGNEEGNVVG-RLPRQYLLENV 225 (262)
Q Consensus 198 t~vliD~~Gkiv~~~~G-~~~~e~l~~~l 225 (262)
|++++ ++|+++.++.| ..+.++|++++
T Consensus 93 T~v~~-k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 93 TFVHI-TDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred EEEEE-eCCeEEEEEeCCCCCHHHHHHHh
Confidence 99999 99999999999 55688888775
No 58
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.66 E-value=5.6e-16 Score=126.55 Aligned_cols=104 Identities=17% Similarity=0.279 Sum_probs=83.5
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccC------C---chHHH
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDN------T---KWEQE 187 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~------~---~~~~l 187 (262)
+.+++.+.+|+..++++. +||++||+||++||+ |+.++|.|++++++|+++ +.+++|+.|. . ...++
T Consensus 3 ~~f~l~d~~G~~v~l~~~--~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f 79 (152)
T cd00340 3 YDFSVKDIDGEPVSLSKY--KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEF 79 (152)
T ss_pred ceeEEECCCCCEEeHHHh--CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHH
Confidence 357888999998888874 589999999999999 999999999999999865 9999998753 1 12233
Q ss_pred HHH-cC-----------------------CCCcc-----------EEEEEcCCCeEEEEEeCCCCHHHHHHH
Q 024784 188 LDE-FG-----------------------VEGIP-----------HFAFLDREGNEEGNVVGRLPRQYLLEN 224 (262)
Q Consensus 188 ~~~-~g-----------------------i~~~P-----------t~vliD~~Gkiv~~~~G~~~~e~l~~~ 224 (262)
+++ ++ +.++| |+++||++|++++++.|..+.+++.+.
T Consensus 80 ~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 80 CETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred HHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 432 22 23466 799999999999999999998877654
No 59
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.66 E-value=1.3e-15 Score=115.24 Aligned_cols=93 Identities=20% Similarity=0.473 Sum_probs=78.1
Q ss_pred chHHHh-cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEE
Q 024784 131 PYEQAL-TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 131 ~l~~~~-~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv 209 (262)
++.+.+ ..+++++|+||++||++|+.+.|.+.++++++.+.+.++.+|.+... +++++|+|.++|++++++.+.+..
T Consensus 9 ~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~i~~~P~~~~~~~~~~~~ 86 (103)
T cd03001 9 NFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ--SLAQQYGVRGFPTIKVFGAGKNSP 86 (103)
T ss_pred hHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH--HHHHHCCCCccCEEEEECCCCcce
Confidence 445444 34667999999999999999999999999999877889999888654 899999999999999995443566
Q ss_pred EEEeCCCCHHHHHHHH
Q 024784 210 GNVVGRLPRQYLLENV 225 (262)
Q Consensus 210 ~~~~G~~~~e~l~~~l 225 (262)
..+.|..+.+.|.+|+
T Consensus 87 ~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 87 QDYQGGRTAKAIVSAA 102 (103)
T ss_pred eecCCCCCHHHHHHHh
Confidence 7788999999888875
No 60
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.65 E-value=1.1e-15 Score=117.97 Aligned_cols=88 Identities=17% Similarity=0.374 Sum_probs=75.0
Q ss_pred cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCchHHHHH-HcCCCCccEEEEEcCCCeEEEEEeC
Q 024784 137 TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTKWEQELD-EFGVEGIPHFAFLDREGNEEGNVVG 214 (262)
Q Consensus 137 ~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~~~~l~~-~~gi~~~Pt~vliD~~Gkiv~~~~G 214 (262)
..+++++|+||++||++|+.+.|.+.++++.+++. +.+..||+|... ..++. .|++.++||+++++++|+....+.|
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~-~~~~~~~~~v~~~Pti~~f~~~~~~~~~y~g 97 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ-REFAKEELQLKSFPTILFFPKNSRQPIKYPS 97 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc-hhhHHhhcCCCcCCEEEEEcCCCCCceeccC
Confidence 36899999999999999999999999999999875 889999988732 35665 5999999999999887778888988
Q ss_pred C-CCHHHHHHHH
Q 024784 215 R-LPRQYLLENV 225 (262)
Q Consensus 215 ~-~~~e~l~~~l 225 (262)
. .+.+.|..||
T Consensus 98 ~~~~~~~l~~f~ 109 (109)
T cd02993 98 EQRDVDSLLMFV 109 (109)
T ss_pred CCCCHHHHHhhC
Confidence 4 7888887664
No 61
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.65 E-value=1.3e-15 Score=124.55 Aligned_cols=109 Identities=15% Similarity=0.198 Sum_probs=88.8
Q ss_pred ccccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEcc--------CC-chHHHH
Q 024784 119 GVSLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVD--------NT-KWEQEL 188 (262)
Q Consensus 119 ~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD--------~~-~~~~l~ 188 (262)
.|++.+.+|+.+++++. +||++||+||++||++|+.++|.|++++++|+++ +.+++|+.+ .. ...+.+
T Consensus 4 ~f~l~~~~G~~~~l~~~--~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 4 SFEVKDARGRTVSLEKY--RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cceeECCCCCEecHHHh--CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHH
Confidence 57888999999888874 6899999999999999999999999999999875 999999852 11 112333
Q ss_pred HH-cC--------------------------CCCccE----EEEEcCCCeEEEEEeCCCCHHHHHHHHHHHh
Q 024784 189 DE-FG--------------------------VEGIPH----FAFLDREGNEEGNVVGRLPRQYLLENVDALA 229 (262)
Q Consensus 189 ~~-~g--------------------------i~~~Pt----~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~ 229 (262)
++ ++ ..++|+ ++++|++|++++++.|..+.+++.+.|++++
T Consensus 82 ~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 82 RRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred HHhcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 22 21 124787 9999999999999999999999999998764
No 62
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.65 E-value=1.6e-15 Score=118.64 Aligned_cols=99 Identities=22% Similarity=0.327 Sum_probs=80.9
Q ss_pred ccccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCC----------------
Q 024784 119 GVSLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNT---------------- 182 (262)
Q Consensus 119 ~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~---------------- 182 (262)
.+.+.+.+|+...+.+ .++++++|+||++||++|+.+.|.|.++++. +.++.|.+|..
T Consensus 2 ~f~l~~~~g~~~~~~~--~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~----~~~i~i~~~~~~~~~~~~~~~~~~~~~ 75 (123)
T cd03011 2 LFTATTLDGEQFDLES--LSGKPVLVYFWATWCPVCRFTSPTVNQLAAD----YPVVSVALRSGDDGAVARFMQKKGYGF 75 (123)
T ss_pred CceeecCCCCEeeHHH--hCCCEEEEEEECCcChhhhhhChHHHHHHhh----CCEEEEEccCCCHHHHHHHHHHcCCCc
Confidence 4667778877766665 4679999999999999999999999999877 34566655432
Q ss_pred -----chHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHH
Q 024784 183 -----KWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLEN 224 (262)
Q Consensus 183 -----~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~ 224 (262)
...++++.|+|.++|+++++|++| +++++.|..+.+.|.+.
T Consensus 76 ~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 76 PVINDPDGVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred cEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence 224688899999999999999998 99999999999988754
No 63
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.65 E-value=1.3e-15 Score=115.33 Aligned_cols=94 Identities=24% Similarity=0.546 Sum_probs=77.9
Q ss_pred chHHHhc-CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhc--CcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCe
Q 024784 131 PYEQALT-NGKPTVLEFYADWCEVCRELAPDVYRVEQQYK--DRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGN 207 (262)
Q Consensus 131 ~l~~~~~-~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~--~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gk 207 (262)
++++... .+++++|+||++||++|+.+.|.+.++.+.++ +++.++.+|.+.. +..++++|+|.++|++++++.+|+
T Consensus 9 ~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~i~~~P~~~~~~~~~~ 87 (105)
T cd02998 9 NFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA-NKDLAKKYGVSGFPTLKFFPKGST 87 (105)
T ss_pred cHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc-chhhHHhCCCCCcCEEEEEeCCCC
Confidence 4444443 46699999999999999999999999999987 3377777777762 459999999999999999977777
Q ss_pred EEEEEeCCCCHHHHHHHH
Q 024784 208 EEGNVVGRLPRQYLLENV 225 (262)
Q Consensus 208 iv~~~~G~~~~e~l~~~l 225 (262)
....+.|..+.++|.++|
T Consensus 88 ~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 88 EPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CccccCCccCHHHHHhhC
Confidence 778899999999888764
No 64
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.64 E-value=1.7e-15 Score=117.75 Aligned_cols=73 Identities=21% Similarity=0.430 Sum_probs=67.0
Q ss_pred CCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCC
Q 024784 139 GKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRL 216 (262)
Q Consensus 139 ~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~ 216 (262)
+++++|+||++||++|+.+.|.|.++++++.+ +.|+.||++.. +++++|+|.++||+++| ++|+++.++.|..
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~---~l~~~~~i~~~Pt~~~f-~~G~~v~~~~G~~ 96 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA---FLVNYLDIKVLPTLLVY-KNGELIDNIVGFE 96 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh---HHHHhcCCCcCCEEEEE-ECCEEEEEEecHH
Confidence 48999999999999999999999999999976 78899998865 89999999999999999 8999999998843
No 65
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.64 E-value=2.6e-15 Score=126.29 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=71.4
Q ss_pred cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceE------EEEEccCCch--------------------------
Q 024784 137 TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNF------VMLNVDNTKW-------------------------- 184 (262)
Q Consensus 137 ~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~------v~V~vD~~~~-------------------------- 184 (262)
..||+.||+|||+||++|+.++|.+.++.++ ++.+ +.||+|+..+
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 4699999999999999999999999999543 1556 8888886421
Q ss_pred -HHHHHHcCCCCccEE-EEEcCCCeEEEEEeCCCCHHHHHHHHH
Q 024784 185 -EQELDEFGVEGIPHF-AFLDREGNEEGNVVGRLPRQYLLENVD 226 (262)
Q Consensus 185 -~~l~~~~gi~~~Pt~-vliD~~Gkiv~~~~G~~~~e~l~~~l~ 226 (262)
..+...||+.++|++ +++|++|++++++.|..+.+++++.+.
T Consensus 134 ~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~ 177 (184)
T TIGR01626 134 KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVIS 177 (184)
T ss_pred cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 134467899999888 899999999999999999888877443
No 66
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.64 E-value=1.3e-15 Score=114.04 Aligned_cols=70 Identities=36% Similarity=0.841 Sum_probs=60.0
Q ss_pred CCcEEEEEEcCCChhhHhhhHHHHHHHHHhc--CcceEEEEEccCCc-----------------------hHHHHHHcCC
Q 024784 139 GKPTVLEFYADWCEVCRELAPDVYRVEQQYK--DRVNFVMLNVDNTK-----------------------WEQELDEFGV 193 (262)
Q Consensus 139 ~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~--~~v~~v~V~vD~~~-----------------------~~~l~~~~gi 193 (262)
||+++|+||++||++|+++.|.|.+++++++ +++.++.|+.|.+. ...+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 7899999999999999999999999999999 55999999999652 1456788999
Q ss_pred CCccEEEEEcCCCeE
Q 024784 194 EGIPHFAFLDREGNE 208 (262)
Q Consensus 194 ~~~Pt~vliD~~Gki 208 (262)
.++|+++++|++|+|
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 999999999999986
No 67
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.64 E-value=3.7e-15 Score=108.79 Aligned_cols=90 Identities=34% Similarity=0.754 Sum_probs=79.2
Q ss_pred hHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEE
Q 024784 132 YEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGN 211 (262)
Q Consensus 132 l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~ 211 (262)
++.++..+++++|+||++||++|+.+.+.+.++.+. .+++.++.+|++... ++++.|++.++|+++++ .+|+++..
T Consensus 3 ~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~--~~~~~~~v~~~P~~~~~-~~g~~~~~ 78 (93)
T cd02947 3 FEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENP--ELAEEYGVRSIPTFLFF-KNGKEVDR 78 (93)
T ss_pred hHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCCh--hHHHhcCcccccEEEEE-ECCEEEEE
Confidence 455566679999999999999999999999999988 445899999998755 89999999999999999 78999999
Q ss_pred EeCCCCHHHHHHHH
Q 024784 212 VVGRLPRQYLLENV 225 (262)
Q Consensus 212 ~~G~~~~e~l~~~l 225 (262)
+.|..+.+.|.++|
T Consensus 79 ~~g~~~~~~l~~~i 92 (93)
T cd02947 79 VVGADPKEELEEFL 92 (93)
T ss_pred EecCCCHHHHHHHh
Confidence 99998888888876
No 68
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.64 E-value=1.3e-15 Score=121.42 Aligned_cols=82 Identities=28% Similarity=0.554 Sum_probs=68.3
Q ss_pred ccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcC---cceEEEEEccCCc----------------------
Q 024784 129 ALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKD---RVNFVMLNVDNTK---------------------- 183 (262)
Q Consensus 129 ~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~---~v~~v~V~vD~~~---------------------- 183 (262)
.+++++ .+||++||+||++||++|+.++|.|+++++++++ .+.++.|++|...
T Consensus 9 ~v~l~~--~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~ 86 (132)
T cd02964 9 VVPVSA--LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEE 86 (132)
T ss_pred cccHHH--hCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHH
Confidence 555554 3799999999999999999999999999998875 3789999988642
Q ss_pred -hHHHHHHcCCCCccEEEEEcCCCeEEEEE
Q 024784 184 -WEQELDEFGVEGIPHFAFLDREGNEEGNV 212 (262)
Q Consensus 184 -~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~ 212 (262)
...+.+.|+|.++|+++++|++|+++++.
T Consensus 87 ~~~~~~~~~~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 87 LRELLEKQFKVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCEEchh
Confidence 12456779999999999999999998754
No 69
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.64 E-value=2.1e-15 Score=119.23 Aligned_cols=90 Identities=23% Similarity=0.364 Sum_probs=73.4
Q ss_pred cccc-cccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccC-----C--------------
Q 024784 124 DLSA-AALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDN-----T-------------- 182 (262)
Q Consensus 124 ~~~g-~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~-----~-------------- 182 (262)
++++ +.+++++. +||++||+||++||++|+.++|.|++++++++++ +.++.|+.+. .
T Consensus 9 w~~~~~~v~l~~~--~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (126)
T cd03012 9 WLNTDKPLSLAQL--RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGIT 86 (126)
T ss_pred hhcCCCccCHHHh--CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCC
Confidence 3433 45666664 7899999999999999999999999999999875 8899987631 1
Q ss_pred ------chHHHHHHcCCCCccEEEEEcCCCeEEEEEeCC
Q 024784 183 ------KWEQELDEFGVEGIPHFAFLDREGNEEGNVVGR 215 (262)
Q Consensus 183 ------~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~ 215 (262)
....+.+.|++.++|++++||++|++++++.|.
T Consensus 87 ~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 87 YPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEecC
Confidence 013455678999999999999999999999885
No 70
>PTZ00102 disulphide isomerase; Provisional
Probab=99.63 E-value=6.2e-15 Score=140.60 Aligned_cols=101 Identities=23% Similarity=0.515 Sum_probs=84.0
Q ss_pred cccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcC---cceEEEEEccCCchHHHHHHcCCCCccEEEEEcC
Q 024784 128 AALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKD---RVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDR 204 (262)
Q Consensus 128 ~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~---~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~ 204 (262)
+..+++.++.+++.++|+||++||++|+.+.|.+.++++.+.+ ++.++.||++.. .+++++|+|.++||++++ .
T Consensus 38 ~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~-~ 114 (477)
T PTZ00102 38 TDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE--MELAQEFGVRGYPTIKFF-N 114 (477)
T ss_pred chhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC--HHHHHhcCCCcccEEEEE-E
Confidence 3446677778899999999999999999999999999887753 266666666554 599999999999999999 5
Q ss_pred CCeEEEEEeCCCCHHHHHHHHHHHhCCC
Q 024784 205 EGNEEGNVVGRLPRQYLLENVDALAHGK 232 (262)
Q Consensus 205 ~Gkiv~~~~G~~~~e~l~~~l~~l~~~~ 232 (262)
+|+.+ .+.|..+.+.|.++++++....
T Consensus 115 ~g~~~-~y~g~~~~~~l~~~l~~~~~~~ 141 (477)
T PTZ00102 115 KGNPV-NYSGGRTADGIVSWIKKLTGPA 141 (477)
T ss_pred CCceE-EecCCCCHHHHHHHHHHhhCCC
Confidence 66666 8899999999999999987543
No 71
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.62 E-value=9.9e-15 Score=121.25 Aligned_cols=114 Identities=21% Similarity=0.344 Sum_probs=94.7
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCC------ch------
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNT------KW------ 184 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~------~~------ 184 (262)
+.+++.+.+++.+++.+.. +++++||+||++||+.|..+++.|.++++++.++ +.|+.|+.|.. ..
T Consensus 5 p~f~l~~~~g~~v~l~~~~-~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~ 83 (171)
T cd02969 5 PDFSLPDTDGKTYSLADFA-DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAK 83 (171)
T ss_pred CCccccCCCCCEEeHHHHh-CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHH
Confidence 3578888888888888743 7899999999999999999999999999999854 99999998752 11
Q ss_pred ---------------HHHHHHcCCCCccEEEEEcCCCeEEEEEe---------CCCCHHHHHHHHHHHhCCC
Q 024784 185 ---------------EQELDEFGVEGIPHFAFLDREGNEEGNVV---------GRLPRQYLLENVDALAHGK 232 (262)
Q Consensus 185 ---------------~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~---------G~~~~e~l~~~l~~l~~~~ 232 (262)
..+++.|++..+|+++++|++|++++... +..+.+++.+.|++++.+.
T Consensus 84 ~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 84 AKEHGYPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred HHHCCCCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence 24456889999999999999999987631 2245688999999999987
No 72
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.61 E-value=5e-15 Score=153.41 Aligned_cols=105 Identities=29% Similarity=0.451 Sum_probs=87.9
Q ss_pred ccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEc---cCC------------------
Q 024784 125 LSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNV---DNT------------------ 182 (262)
Q Consensus 125 ~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~v---D~~------------------ 182 (262)
.+++...+.+. .+||++||+|||+||++|+.++|.|++++++|+++ +.++.|+. |..
T Consensus 407 ~~g~~~~l~~~-lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~p 485 (1057)
T PLN02919 407 LNTAPLQFRRD-LKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHP 485 (1057)
T ss_pred cCCccccchhh-cCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCcc
Confidence 45655555433 36999999999999999999999999999999876 88888863 321
Q ss_pred ----chHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHhC
Q 024784 183 ----KWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVDALAH 230 (262)
Q Consensus 183 ----~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~~ 230 (262)
...+++++|+|.++|++++||++|+++.++.|....+++.++|+.++.
T Consensus 486 vv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 486 VVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred EEECCchHHHHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 123567889999999999999999999999999999999999999875
No 73
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.60 E-value=7.5e-15 Score=111.35 Aligned_cols=93 Identities=32% Similarity=0.642 Sum_probs=78.9
Q ss_pred cccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcC-cceEEEEEccCC----------------
Q 024784 120 VSLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKD-RVNFVMLNVDNT---------------- 182 (262)
Q Consensus 120 ~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~-~v~~v~V~vD~~---------------- 182 (262)
+.+.+++|+...+.+. .+++++|+||++||++|+...+.+.++.+++.+ ++.++.|++|..
T Consensus 2 ~~~~~~~g~~~~~~~~--~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~ 79 (116)
T cd02966 2 FSLPDLDGKPVSLSDL--KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITF 79 (116)
T ss_pred ccccCCCCCEeehHHc--CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence 4566777777777654 589999999999999999999999999999963 399999999874
Q ss_pred -----chHHHHHHcCCCCccEEEEEcCCCeEEEEEeC
Q 024784 183 -----KWEQELDEFGVEGIPHFAFLDREGNEEGNVVG 214 (262)
Q Consensus 183 -----~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G 214 (262)
...++.+.|++.++|+++++|++|+++.++.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 80 PVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ceEEcCcchHHHhcCcCccceEEEECCCCcEEEEecC
Confidence 11367889999999999999999999998876
No 74
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.59 E-value=9.1e-15 Score=115.77 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=73.3
Q ss_pred chHHHhcCCCcEEEEEEcCCChhhHhhhHHHH---HHHHHhcCcceEEEEEccCCchHHHHH--------HcCCCCccEE
Q 024784 131 PYEQALTNGKPTVLEFYADWCEVCRELAPDVY---RVEQQYKDRVNFVMLNVDNTKWEQELD--------EFGVEGIPHF 199 (262)
Q Consensus 131 ~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~---~l~~~~~~~v~~v~V~vD~~~~~~l~~--------~~gi~~~Pt~ 199 (262)
.+.++.+++|+++|+|+++||++|+.|...+. ++.+.+.+++.++.+|++... ++.+ .|++.++|++
T Consensus 7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~--~~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERP--DVDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCc--HHHHHHHHHHHHhcCCCCCCEE
Confidence 46677789999999999999999999987543 466666666888888887654 3322 4699999999
Q ss_pred EEEcCCCeEEEEEeCC-----CCHHHHHHHHHHHh
Q 024784 200 AFLDREGNEEGNVVGR-----LPRQYLLENVDALA 229 (262)
Q Consensus 200 vliD~~Gkiv~~~~G~-----~~~e~l~~~l~~l~ 229 (262)
+|+|++|+++....+. .+...+.++++++.
T Consensus 85 vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (124)
T cd02955 85 VFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIR 119 (124)
T ss_pred EEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHH
Confidence 9999999999876554 33345666665543
No 75
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.59 E-value=1.5e-14 Score=121.94 Aligned_cols=112 Identities=13% Similarity=0.260 Sum_probs=88.1
Q ss_pred cccccccccccccchHHHhcCCCcE-EEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccC----C-----chHH
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPT-VLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDN----T-----KWEQ 186 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~v-lV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~----~-----~~~~ 186 (262)
+.|++++.+|+.+++++. +||++ |+.+||+||++|+.++|.|++++++|+++ +.+++|++|. . ...+
T Consensus 21 p~f~l~d~~G~~vsLs~~--~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~ 98 (183)
T PTZ00256 21 FEFEAIDIDGQLVQLSKF--KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKE 98 (183)
T ss_pred cceEeEcCCCCEEeHHHh--CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHH
Confidence 358888999998888874 68865 45669999999999999999999999876 9999998642 1 0111
Q ss_pred HH-HH------------------------------------cCCCCccE---EEEEcCCCeEEEEEeCCCCHHHHHHHHH
Q 024784 187 EL-DE------------------------------------FGVEGIPH---FAFLDREGNEEGNVVGRLPRQYLLENVD 226 (262)
Q Consensus 187 l~-~~------------------------------------~gi~~~Pt---~vliD~~Gkiv~~~~G~~~~e~l~~~l~ 226 (262)
+. ++ +++.++|+ +++||++|+++.++.|..+.+.+.+.|+
T Consensus 99 f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~ 178 (183)
T PTZ00256 99 YVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIE 178 (183)
T ss_pred HHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHH
Confidence 11 11 13447894 6999999999999999999999999999
Q ss_pred HHhCC
Q 024784 227 ALAHG 231 (262)
Q Consensus 227 ~l~~~ 231 (262)
+++++
T Consensus 179 ~ll~~ 183 (183)
T PTZ00256 179 KLLNA 183 (183)
T ss_pred HHhcC
Confidence 98763
No 76
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.59 E-value=1.1e-14 Score=110.19 Aligned_cols=91 Identities=24% Similarity=0.518 Sum_probs=75.0
Q ss_pred chHHHh-cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcC--cceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCe
Q 024784 131 PYEQAL-TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKD--RVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGN 207 (262)
Q Consensus 131 ~l~~~~-~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~--~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gk 207 (262)
++++.+ ..+++++|+||++||++|+.+.|.+.++.+.+++ ++.++.+|.+.. +++..+++.++||++++ ++|+
T Consensus 9 ~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---~~~~~~~~~~~Pt~~~~-~~~~ 84 (104)
T cd02995 9 NFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN---DVPSEFVVDGFPTILFF-PAGD 84 (104)
T ss_pred hhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch---hhhhhccCCCCCEEEEE-cCCC
Confidence 454443 3468999999999999999999999999999877 377888887764 57888999999999999 5555
Q ss_pred --EEEEEeCCCCHHHHHHHH
Q 024784 208 --EEGNVVGRLPRQYLLENV 225 (262)
Q Consensus 208 --iv~~~~G~~~~e~l~~~l 225 (262)
...++.|..+.+.|.++|
T Consensus 85 ~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 85 KSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCceEccCCcCHHHHHhhC
Confidence 566788999988888764
No 77
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.58 E-value=2.3e-14 Score=127.85 Aligned_cols=94 Identities=17% Similarity=0.293 Sum_probs=80.2
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc---------hHHHHHHcCCCCccEEEEEcCCC-e
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK---------WEQELDEFGVEGIPHFAFLDREG-N 207 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~---------~~~l~~~~gi~~~Pt~vliD~~G-k 207 (262)
.|+++||+||++||++|+.++|.|++++++++ +.++.|++|... ...++++|||.++||++++|++| +
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 58999999999999999999999999999996 688888888642 24688999999999999999855 4
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCCC
Q 024784 208 EEGNVVGRLPRQYLLENVDALAHGKA 233 (262)
Q Consensus 208 iv~~~~G~~~~e~l~~~l~~l~~~~~ 233 (262)
+.....|.++.++|.+.|..+..+.+
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a~~~~ 268 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAAHPAG 268 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhcccC
Confidence 54557799999999999998876443
No 78
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.57 E-value=1.6e-14 Score=115.32 Aligned_cols=106 Identities=21% Similarity=0.234 Sum_probs=89.6
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEE-cCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCc------------
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFY-ADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTK------------ 183 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~-a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~------------ 183 (262)
+.+++.+.+|+..++.+. +||+++|+|| +.||+.|..+++.|.++++++.+. +.++.|++|...
T Consensus 4 p~f~l~~~~g~~~~l~~~--~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 81 (140)
T cd03017 4 PDFTLPDQDGETVSLSDL--RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLP 81 (140)
T ss_pred CCccccCCCCCEEeHHHh--CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 457888888998888875 5899999999 689999999999999999998765 999999987542
Q ss_pred -------hHHHHHHcCCCCc---------cEEEEEcCCCeEEEEEeCCCCHHHHHHHH
Q 024784 184 -------WEQELDEFGVEGI---------PHFAFLDREGNEEGNVVGRLPRQYLLENV 225 (262)
Q Consensus 184 -------~~~l~~~~gi~~~---------Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l 225 (262)
...+.+.||+..+ |+++++|++|++++.+.|....+.+.+.+
T Consensus 82 ~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 82 FPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred ceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 1355677898887 99999999999999999999888777665
No 79
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.57 E-value=3.6e-14 Score=110.36 Aligned_cols=100 Identities=17% Similarity=0.230 Sum_probs=86.4
Q ss_pred hHHHhcCCCcEEEEEEcCCChhhHhhhHHHH---HHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcC-CCe
Q 024784 132 YEQALTNGKPTVLEFYADWCEVCRELAPDVY---RVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDR-EGN 207 (262)
Q Consensus 132 l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~---~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~-~Gk 207 (262)
+.++.+++|+++|+|+++||++|+.+...+. ++.+.++.++.++.+|++..+..+++..|++.++|+++++|+ +|+
T Consensus 10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~ 89 (114)
T cd02958 10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGE 89 (114)
T ss_pred HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCc
Confidence 4556678999999999999999999976544 366666666888888888777789999999999999999999 899
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCC
Q 024784 208 EEGNVVGRLPRQYLLENVDALAHG 231 (262)
Q Consensus 208 iv~~~~G~~~~e~l~~~l~~l~~~ 231 (262)
++.++.|..+.++|.+.|++....
T Consensus 90 ~l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 90 VLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred EeEEEcCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999987653
No 80
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.56 E-value=1.8e-14 Score=140.72 Aligned_cols=93 Identities=28% Similarity=0.543 Sum_probs=80.5
Q ss_pred hcCCCcEEEEEEcCCChhhHhhhHHH---HHHHHHhcCcceEEEEEccCC--chHHHHHHcCCCCccEEEEEcCCCeEE-
Q 024784 136 LTNGKPTVLEFYADWCEVCRELAPDV---YRVEQQYKDRVNFVMLNVDNT--KWEQELDEFGVEGIPHFAFLDREGNEE- 209 (262)
Q Consensus 136 ~~~~k~vlV~F~a~wC~~C~~~~p~L---~~l~~~~~~~v~~v~V~vD~~--~~~~l~~~~gi~~~Pt~vliD~~Gkiv- 209 (262)
..+||+++|+|||+||++|+.+.+.+ .++.+.+++ +.++.+|++++ ++.+++++|++.++||++++|++|+++
T Consensus 471 ~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~ 549 (571)
T PRK00293 471 KGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIP 549 (571)
T ss_pred HhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcc
Confidence 34689999999999999999998876 567777765 88999999864 346889999999999999999999984
Q ss_pred -EEEeCCCCHHHHHHHHHHHh
Q 024784 210 -GNVVGRLPRQYLLENVDALA 229 (262)
Q Consensus 210 -~~~~G~~~~e~l~~~l~~l~ 229 (262)
.++.|..+.+++.+.|+++.
T Consensus 550 ~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 550 DARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred cccccCCCCHHHHHHHHHHhc
Confidence 68899999999999999864
No 81
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.56 E-value=4.6e-14 Score=102.54 Aligned_cols=81 Identities=21% Similarity=0.372 Sum_probs=70.4
Q ss_pred EEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHH
Q 024784 142 TVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYL 221 (262)
Q Consensus 142 vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l 221 (262)
.+..||++||++|+.+.+.|.+++++++..+.++.||++... +++++||+.++||+++ +|+. ++.|..+.+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~vPt~~~---~g~~--~~~G~~~~~~l 74 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP--QKAMEYGIMAVPAIVI---NGDV--EFIGAPTKEEL 74 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH--HHHHHcCCccCCEEEE---CCEE--EEecCCCHHHH
Confidence 467899999999999999999999999877888999988665 8899999999999976 6663 77898899999
Q ss_pred HHHHHHHh
Q 024784 222 LENVDALA 229 (262)
Q Consensus 222 ~~~l~~l~ 229 (262)
.++|++++
T Consensus 75 ~~~l~~~~ 82 (82)
T TIGR00411 75 VEAIKKRL 82 (82)
T ss_pred HHHHHhhC
Confidence 99998753
No 82
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.54 E-value=5.3e-14 Score=117.85 Aligned_cols=72 Identities=22% Similarity=0.397 Sum_probs=66.2
Q ss_pred CcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCC
Q 024784 140 KPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRL 216 (262)
Q Consensus 140 k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~ 216 (262)
.+|||+||++||++|+.+.|.|.+++++|.. +.|+.||++.. .++.+|+|.++||+++| ++|+++.++.|..
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-vkF~kVd~d~~---~l~~~f~v~~vPTllly-k~G~~v~~~vG~~ 155 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-VKFCKIRASAT---GASDEFDTDALPALLVY-KGGELIGNFVRVT 155 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCCC-eEEEEEeccch---hhHHhCCCCCCCEEEEE-ECCEEEEEEechH
Confidence 4999999999999999999999999999975 89999999964 79999999999999999 9999999988743
No 83
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.52 E-value=7.2e-14 Score=132.46 Aligned_cols=98 Identities=16% Similarity=0.313 Sum_probs=80.0
Q ss_pred cchHHHhc---CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCchHHHHHHcCCCCccEEEEEcCC
Q 024784 130 LPYEQALT---NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDRE 205 (262)
Q Consensus 130 ~~l~~~~~---~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~ 205 (262)
.++++.+. .++++||+||++||++|+.+.|.+.++++++.+. +.|+.||+|.+......++|+|.++||+++| ++
T Consensus 359 ~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~F-k~ 437 (463)
T TIGR00424 359 PGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFF-PK 437 (463)
T ss_pred HHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEE-EC
Confidence 34565543 7899999999999999999999999999999875 8899999997643344578999999999999 55
Q ss_pred Ce-EEEEEe-CCCCHHHHHHHHHHH
Q 024784 206 GN-EEGNVV-GRLPRQYLLENVDAL 228 (262)
Q Consensus 206 Gk-iv~~~~-G~~~~e~l~~~l~~l 228 (262)
|+ ....|. |..+.+.|..+|+.+
T Consensus 438 g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 438 HSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred CCCCceeCCCCCCCHHHHHHHHHhh
Confidence 54 334465 579999999999875
No 84
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.52 E-value=1.2e-13 Score=112.59 Aligned_cols=109 Identities=19% Similarity=0.168 Sum_probs=88.6
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEEcC-CChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCc------------
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFYAD-WCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTK------------ 183 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~-wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~------------ 183 (262)
+.+++.+.+|+.+++++. +||++||+||++ ||+.|..+.+.|.+++++++++ +.++.|+.|...
T Consensus 11 p~f~l~~~~G~~~~l~~~--~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~ 88 (154)
T PRK09437 11 PKFSLPDQDGEQVSLTDF--QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLN 88 (154)
T ss_pred CCcEeeCCCCCEEeHHHh--CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 468888999988888774 789999999976 6889999999999999999766 999999987532
Q ss_pred -------hHHHHHHcCCCCc------------cEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHH
Q 024784 184 -------WEQELDEFGVEGI------------PHFAFLDREGNEEGNVVGRLPRQYLLENVDAL 228 (262)
Q Consensus 184 -------~~~l~~~~gi~~~------------Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l 228 (262)
...++++||+... |++++||++|++++.+.|....+.+.+.++.+
T Consensus 89 ~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~~~ 152 (154)
T PRK09437 89 FTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLDYL 152 (154)
T ss_pred CeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHHHH
Confidence 1345677887654 78899999999999999988777766666554
No 85
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.51 E-value=5.1e-14 Score=109.93 Aligned_cols=92 Identities=25% Similarity=0.563 Sum_probs=80.8
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEEcC-CChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCc------------
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFYAD-WCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTK------------ 183 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~-wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~------------ 183 (262)
+.+.+++.+++..+++++ +||++||+||++ ||+.|+..++.|+++.++++++ +.++.|+.|..+
T Consensus 6 P~f~l~~~~g~~~~l~~l--~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~ 83 (124)
T PF00578_consen 6 PDFTLTDSDGKTVSLSDL--KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLP 83 (124)
T ss_dssp GCEEEETTTSEEEEGGGG--TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCS
T ss_pred CCcEeECCCCCEEEHHHH--CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccc
Confidence 468888999999999886 789999999999 9999999999999999999875 999999998653
Q ss_pred -------hHHHHHHcCCC------CccEEEEEcCCCeEEEE
Q 024784 184 -------WEQELDEFGVE------GIPHFAFLDREGNEEGN 211 (262)
Q Consensus 184 -------~~~l~~~~gi~------~~Pt~vliD~~Gkiv~~ 211 (262)
..++++.|++. .+|+++++|++|+++++
T Consensus 84 ~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 84 FPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp SEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred cccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 13566788998 99999999999999874
No 86
>PTZ00102 disulphide isomerase; Provisional
Probab=99.51 E-value=1.1e-13 Score=132.11 Aligned_cols=100 Identities=24% Similarity=0.432 Sum_probs=85.3
Q ss_pred cchHHH-hcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc--ceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCC
Q 024784 130 LPYEQA-LTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR--VNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREG 206 (262)
Q Consensus 130 ~~l~~~-~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~--v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~G 206 (262)
.++++. ...+++++|+|||+||++|+.+.|.+.++++.+.+. +.++.+|.+..+ ..++.|++.++||+++++.+|
T Consensus 365 ~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~--~~~~~~~v~~~Pt~~~~~~~~ 442 (477)
T PTZ00102 365 NTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANE--TPLEEFSWSAFPTILFVKAGE 442 (477)
T ss_pred cchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCc--cchhcCCCcccCeEEEEECCC
Confidence 345555 467899999999999999999999999999988763 777777877654 788999999999999997777
Q ss_pred eEEEEEeCCCCHHHHHHHHHHHhCC
Q 024784 207 NEEGNVVGRLPRQYLLENVDALAHG 231 (262)
Q Consensus 207 kiv~~~~G~~~~e~l~~~l~~l~~~ 231 (262)
++..++.|..+.+.+.++|++....
T Consensus 443 ~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 443 RTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred cceeEecCcCCHHHHHHHHHHcCCC
Confidence 7666899999999999999998754
No 87
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.50 E-value=1.4e-13 Score=110.61 Aligned_cols=97 Identities=15% Similarity=0.229 Sum_probs=77.6
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCch------------
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTKW------------ 184 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~~------------ 184 (262)
+.+++.+.+|+.+++.+...+++.+|++||++||++|+.+++.|.++++++.+. +.++.|+.|....
T Consensus 3 p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~ 82 (149)
T cd02970 3 PDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPF 82 (149)
T ss_pred CCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCC
Confidence 457788888988888765444455566667999999999999999999999755 9999999875421
Q ss_pred -------HHHHHHcCCC-----------------------------CccEEEEEcCCCeEEEEEeC
Q 024784 185 -------EQELDEFGVE-----------------------------GIPHFAFLDREGNEEGNVVG 214 (262)
Q Consensus 185 -------~~l~~~~gi~-----------------------------~~Pt~vliD~~Gkiv~~~~G 214 (262)
.++.+.||+. .+|+++++|++|++++.+.|
T Consensus 83 p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 83 PVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred eEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 3556778873 79999999999999998876
No 88
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.49 E-value=1.1e-13 Score=108.69 Aligned_cols=70 Identities=20% Similarity=0.416 Sum_probs=61.3
Q ss_pred CCCcEEEEEEc-------CCChhhHhhhHHHHHHHHHhcCcceEEEEEccCC-----chHHHHHHcCCC-CccEEEEEcC
Q 024784 138 NGKPTVLEFYA-------DWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNT-----KWEQELDEFGVE-GIPHFAFLDR 204 (262)
Q Consensus 138 ~~k~vlV~F~a-------~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~-----~~~~l~~~~gi~-~~Pt~vliD~ 204 (262)
+|++++|+||| +||++|+.+.|.|.++.+++++++.|+.||+|.. .+.++..+|+|. ++||+++++.
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~ 99 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKT 99 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcC
Confidence 37899999999 9999999999999999999997799999999863 245889999998 9999999943
Q ss_pred CCe
Q 024784 205 EGN 207 (262)
Q Consensus 205 ~Gk 207 (262)
.++
T Consensus 100 ~~~ 102 (119)
T cd02952 100 PQR 102 (119)
T ss_pred Cce
Confidence 333
No 89
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.49 E-value=1.8e-13 Score=129.40 Aligned_cols=98 Identities=18% Similarity=0.498 Sum_probs=84.5
Q ss_pred cchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc---ceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCC
Q 024784 130 LPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR---VNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREG 206 (262)
Q Consensus 130 ~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~---v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~G 206 (262)
.++.+++.++++++|+|||+||++|+.+.|.+.++++.+.+. +.++.||++.. .+++++|+|.++||++++ ++|
T Consensus 9 ~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~-~~g 85 (462)
T TIGR01130 9 DNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE--KDLAQKYGVSGYPTLKIF-RNG 85 (462)
T ss_pred HHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc--HHHHHhCCCccccEEEEE-eCC
Confidence 456677778999999999999999999999999998887643 66676666655 599999999999999999 788
Q ss_pred eE-EEEEeCCCCHHHHHHHHHHHhC
Q 024784 207 NE-EGNVVGRLPRQYLLENVDALAH 230 (262)
Q Consensus 207 ki-v~~~~G~~~~e~l~~~l~~l~~ 230 (262)
+. +..+.|..+.+.|.+++++.+.
T Consensus 86 ~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 86 EDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred ccceeEecCCCCHHHHHHHHHHhcC
Confidence 87 7889999999999999998875
No 90
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.48 E-value=1.7e-13 Score=106.91 Aligned_cols=76 Identities=24% Similarity=0.540 Sum_probs=62.4
Q ss_pred chHHHh-cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcC---cceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCC
Q 024784 131 PYEQAL-TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKD---RVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREG 206 (262)
Q Consensus 131 ~l~~~~-~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~---~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~G 206 (262)
++++.. ..+++++|+||++||++|+.+.|.+.++++.+++ .+.+..+|.+...+.+++++|+|.++||+++| ++|
T Consensus 10 ~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf-~~~ 88 (114)
T cd02992 10 SFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYF-PPF 88 (114)
T ss_pred hHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEE-CCC
Confidence 444443 3457999999999999999999999999998764 37777888766556789999999999999999 555
Q ss_pred e
Q 024784 207 N 207 (262)
Q Consensus 207 k 207 (262)
+
T Consensus 89 ~ 89 (114)
T cd02992 89 S 89 (114)
T ss_pred C
Confidence 5
No 91
>PTZ00062 glutaredoxin; Provisional
Probab=99.48 E-value=2.8e-13 Score=115.86 Aligned_cols=87 Identities=11% Similarity=0.132 Sum_probs=74.9
Q ss_pred hHHHhcCC-CcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEE
Q 024784 132 YEQALTNG-KPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEG 210 (262)
Q Consensus 132 l~~~~~~~-k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~ 210 (262)
+.+..+.+ ..++++|||+||++|+.+.+.+.++.++|.+ +.|+.||.| |+|.++||++++ ++|+++.
T Consensus 9 ~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d----------~~V~~vPtfv~~-~~g~~i~ 76 (204)
T PTZ00062 9 KDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA----------DANNEYGVFEFY-QNSQLIN 76 (204)
T ss_pred HHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc----------cCcccceEEEEE-ECCEEEe
Confidence 44444433 6789999999999999999999999999976 899998877 999999999999 8999999
Q ss_pred EEeCCCCHHHHHHHHHHHhCC
Q 024784 211 NVVGRLPRQYLLENVDALAHG 231 (262)
Q Consensus 211 ~~~G~~~~e~l~~~l~~l~~~ 231 (262)
++.|. +..++.+.++++...
T Consensus 77 r~~G~-~~~~~~~~~~~~~~~ 96 (204)
T PTZ00062 77 SLEGC-NTSTLVSFIRGWAQK 96 (204)
T ss_pred eeeCC-CHHHHHHHHHHHcCC
Confidence 99995 467788888887764
No 92
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.47 E-value=3.4e-13 Score=114.54 Aligned_cols=81 Identities=17% Similarity=0.290 Sum_probs=69.6
Q ss_pred CCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCC---
Q 024784 139 GKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGR--- 215 (262)
Q Consensus 139 ~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~--- 215 (262)
+++|||+||++||++|+.+.+.|.+++++|.. +.|+.|+++. ....|++.++||+++| ++|+++.++.|.
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~-----~~~~~~i~~lPTlliy-k~G~~v~~ivG~~~~ 174 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQ-----CIPNYPDKNLPTILVY-RNGDIVKQFIGLLEF 174 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHH-----hHhhCCCCCCCEEEEE-ECCEEEEEEeCchhh
Confidence 45899999999999999999999999999975 8999999974 3689999999999999 999999999884
Q ss_pred ----CCHHHHHHHHH
Q 024784 216 ----LPRQYLLENVD 226 (262)
Q Consensus 216 ----~~~e~l~~~l~ 226 (262)
.+.+.|+..|.
T Consensus 175 gg~~~~~~~lE~~L~ 189 (192)
T cd02988 175 GGMNTTMEDLEWLLV 189 (192)
T ss_pred CCCCCCHHHHHHHHH
Confidence 34455555554
No 93
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.47 E-value=3.3e-13 Score=108.54 Aligned_cols=105 Identities=10% Similarity=0.055 Sum_probs=84.0
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEEcCC-ChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc-------------
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFYADW-CEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK------------- 183 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~w-C~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~------------- 183 (262)
+.+++.+.+|+.+++++. +||++||+||+.| |++|+.+++.|.++++++. ++.++.|++|...
T Consensus 7 P~f~l~~~~g~~~~l~~~--~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~ 83 (143)
T cd03014 7 PDFTLVTSDLSEVSLADF--AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDN 83 (143)
T ss_pred CCcEEECCCCcEEeHHHh--CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCC
Confidence 457888888888888874 6899999999998 6999999999999999986 4899999997431
Q ss_pred --------hHHHHHHcCCCC------ccEEEEEcCCCeEEEEEeCCC--CHHHHHHHH
Q 024784 184 --------WEQELDEFGVEG------IPHFAFLDREGNEEGNVVGRL--PRQYLLENV 225 (262)
Q Consensus 184 --------~~~l~~~~gi~~------~Pt~vliD~~Gkiv~~~~G~~--~~e~l~~~l 225 (262)
...+.+.||+.. .|+++++|++|++++...|.. ...++++.|
T Consensus 84 ~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 84 VTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred ceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 145677888863 699999999999999988753 334455444
No 94
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.46 E-value=2.8e-13 Score=102.66 Aligned_cols=89 Identities=25% Similarity=0.406 Sum_probs=77.4
Q ss_pred CCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCC--CccEEEEEcCC-CeEEEEEeCC
Q 024784 139 GKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVE--GIPHFAFLDRE-GNEEGNVVGR 215 (262)
Q Consensus 139 ~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~--~~Pt~vliD~~-Gkiv~~~~G~ 215 (262)
++++++.||++||++|..+.+.+.++++++++++.|+.+|.|... .+++.||+. ++|++++++.+ |+......|.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~--~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~ 89 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG--RHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE 89 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH--HHHHHcCCChhhCCEEEEEecccccccCCCccc
Confidence 789999999999999999999999999999988999999998754 899999999 99999999552 6555555566
Q ss_pred CCHHHHHHHHHHHh
Q 024784 216 LPRQYLLENVDALA 229 (262)
Q Consensus 216 ~~~e~l~~~l~~l~ 229 (262)
.+.+.|.++|+.++
T Consensus 90 ~~~~~l~~fi~~~~ 103 (103)
T cd02982 90 LTAESLEEFVEDFL 103 (103)
T ss_pred cCHHHHHHHHHhhC
Confidence 68999999998753
No 95
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.46 E-value=5.5e-13 Score=110.74 Aligned_cols=107 Identities=13% Similarity=0.092 Sum_probs=84.8
Q ss_pred ccccccccccccchHHHhcCCCcEEEEEEcCC-ChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc--------------
Q 024784 119 GVSLKDLSAAALPYEQALTNGKPTVLEFYADW-CEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK-------------- 183 (262)
Q Consensus 119 ~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~w-C~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~-------------- 183 (262)
.+.+.+.+|+.+.+++. +||++||+||++| |++|..+++.|+++++++. ++.++.|+.|...
T Consensus 26 ~f~l~~~~g~~v~l~~~--~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~ 102 (167)
T PRK00522 26 DFTLVANDLSDVSLADF--AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENV 102 (167)
T ss_pred CeEEEcCCCcEEehHHh--CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCc
Confidence 57778888888888774 6899999999999 9999999999999999985 5899999988431
Q ss_pred -------hHHHHHHcCCCCcc---------EEEEEcCCCeEEEEEeCC--CCHHHHHHHHHHH
Q 024784 184 -------WEQELDEFGVEGIP---------HFAFLDREGNEEGNVVGR--LPRQYLLENVDAL 228 (262)
Q Consensus 184 -------~~~l~~~~gi~~~P---------t~vliD~~Gkiv~~~~G~--~~~e~l~~~l~~l 228 (262)
...+++.||+...| ++++||++|++++.+.+. ....++.+.|+.+
T Consensus 103 ~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l 165 (167)
T PRK00522 103 ITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAAL 165 (167)
T ss_pred eEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHh
Confidence 12667888998777 999999999999988643 3334455555543
No 96
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.45 E-value=7.8e-13 Score=110.22 Aligned_cols=110 Identities=20% Similarity=0.217 Sum_probs=86.0
Q ss_pred cccccccccc----cccchHHHhcCCCcEEEEEE-cCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCc--------
Q 024784 118 FGVSLKDLSA----AALPYEQALTNGKPTVLEFY-ADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTK-------- 183 (262)
Q Consensus 118 ~~~~l~~~~g----~~~~l~~~~~~~k~vlV~F~-a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~-------- 183 (262)
+.+.+++.++ +...+++. +||++||+|| ++||++|..+++.|+++++++.+. +.++.|++|...
T Consensus 6 P~f~~~~~~g~~~~~~~~l~~~--~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~ 83 (173)
T cd03015 6 PDFKATAVVPNGEFKEISLSDY--KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNT 83 (173)
T ss_pred CCCEeecccCCCCceEEehHHh--CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHh
Confidence 4577777766 56677664 6899999999 899999999999999999999765 999999987531
Q ss_pred ------------------hHHHHHHcCCC------CccEEEEEcCCCeEEEEEeCCC----CHHHHHHHHHHHh
Q 024784 184 ------------------WEQELDEFGVE------GIPHFAFLDREGNEEGNVVGRL----PRQYLLENVDALA 229 (262)
Q Consensus 184 ------------------~~~l~~~~gi~------~~Pt~vliD~~Gkiv~~~~G~~----~~e~l~~~l~~l~ 229 (262)
..++++.||+. .+|++++||++|++++.+.+.. +.+++.+.|+.+.
T Consensus 84 ~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~ 157 (173)
T cd03015 84 PRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQ 157 (173)
T ss_pred hhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 12445678876 5789999999999999986643 4566777776654
No 97
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.1e-13 Score=115.75 Aligned_cols=93 Identities=29% Similarity=0.558 Sum_probs=84.0
Q ss_pred cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCC
Q 024784 137 TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRL 216 (262)
Q Consensus 137 ~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~ 216 (262)
..+|.++|+|+|+||++|+...|.+..+..+|.+ ..|..||+|+-. ..+..+||...||+++| .+|+-+..+.| .
T Consensus 19 ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~--~taa~~gV~amPTFiff-~ng~kid~~qG-A 93 (288)
T KOG0908|consen 19 AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECR--GTAATNGVNAMPTFIFF-RNGVKIDQIQG-A 93 (288)
T ss_pred cCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhh--chhhhcCcccCceEEEE-ecCeEeeeecC-C
Confidence 4578999999999999999999999999999977 789999999765 78999999999999999 99999999999 6
Q ss_pred CHHHHHHHHHHHhCCCCC
Q 024784 217 PRQYLLENVDALAHGKAS 234 (262)
Q Consensus 217 ~~e~l~~~l~~l~~~~~~ 234 (262)
+..-|++.+.+++.....
T Consensus 94 d~~gLe~kv~~~~stsaa 111 (288)
T KOG0908|consen 94 DASGLEEKVAKYASTSAA 111 (288)
T ss_pred CHHHHHHHHHHHhccCcc
Confidence 778899999999876643
No 98
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.44 E-value=4.2e-13 Score=106.69 Aligned_cols=86 Identities=16% Similarity=0.256 Sum_probs=63.0
Q ss_pred ccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHH---HHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCC
Q 024784 129 ALPYEQALTNGKPTVLEFYADWCEVCRELAPDVY---RVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDRE 205 (262)
Q Consensus 129 ~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~---~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~ 205 (262)
...++.+.+++|+++|+|+++||++|+++...+. ++.+....++.++.++.|..+ .-....| .++||++|+|++
T Consensus 13 eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td--~~~~~~g-~~vPtivFld~~ 89 (130)
T cd02960 13 EEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTD--KNLSPDG-QYVPRIMFVDPS 89 (130)
T ss_pred HHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCC--CCcCccC-cccCeEEEECCC
Confidence 3455667788999999999999999999998766 355555444555566665432 1111244 689999999999
Q ss_pred CeEEEEEeCCCC
Q 024784 206 GNEEGNVVGRLP 217 (262)
Q Consensus 206 Gkiv~~~~G~~~ 217 (262)
|+++.++.|+.+
T Consensus 90 g~vi~~i~Gy~~ 101 (130)
T cd02960 90 LTVRADITGRYS 101 (130)
T ss_pred CCCccccccccc
Confidence 999999888764
No 99
>PLN02309 5'-adenylylsulfate reductase
Probab=99.44 E-value=8.3e-13 Score=125.20 Aligned_cols=91 Identities=15% Similarity=0.364 Sum_probs=75.0
Q ss_pred cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCchHHHHH-HcCCCCccEEEEEcCCCeEEEEEe-
Q 024784 137 TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTKWEQELD-EFGVEGIPHFAFLDREGNEEGNVV- 213 (262)
Q Consensus 137 ~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~~~~l~~-~~gi~~~Pt~vliD~~Gkiv~~~~- 213 (262)
..++++||+||++||++|+.+.|.+.++++++.+. +.|+.+|+|..+ .+++. +|+|.++||+++|.++.+....|.
T Consensus 363 ~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~-~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~ 441 (457)
T PLN02309 363 NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQ-KEFAKQELQLGSFPTILLFPKNSSRPIKYPS 441 (457)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcc-hHHHHhhCCCceeeEEEEEeCCCCCeeecCC
Confidence 47899999999999999999999999999999765 899999998332 36675 699999999999944333334465
Q ss_pred CCCCHHHHHHHHHHH
Q 024784 214 GRLPRQYLLENVDAL 228 (262)
Q Consensus 214 G~~~~e~l~~~l~~l 228 (262)
|..+.+.|.+||+.+
T Consensus 442 ~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 442 EKRDVDSLLSFVNSL 456 (457)
T ss_pred CCcCHHHHHHHHHHh
Confidence 468999999999876
No 100
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.43 E-value=1e-12 Score=113.35 Aligned_cols=90 Identities=17% Similarity=0.369 Sum_probs=76.6
Q ss_pred CCcEEEEEEc---CCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEE-EEeC
Q 024784 139 GKPTVLEFYA---DWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEG-NVVG 214 (262)
Q Consensus 139 ~k~vlV~F~a---~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~-~~~G 214 (262)
+...++.|++ +||++|+.+.|.+.++.+++++ +.+..+++|.+...+++++|+|.++||+++| ++|+.+. ++.|
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~-~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f-~~g~~~~~~~~G 96 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK-LKLEIYDFDTPEDKEEAEKYGVERVPTTIIL-EEGKDGGIRYTG 96 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC-ceEEEEecCCcccHHHHHHcCCCccCEEEEE-eCCeeeEEEEee
Confidence 3344666777 9999999999999999999954 6677777776666799999999999999999 6888885 8999
Q ss_pred CCCHHHHHHHHHHHhC
Q 024784 215 RLPRQYLLENVDALAH 230 (262)
Q Consensus 215 ~~~~e~l~~~l~~l~~ 230 (262)
..+.+++.++|+.++.
T Consensus 97 ~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 97 IPAGYEFAALIEDIVR 112 (215)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999999864
No 101
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.3e-12 Score=103.79 Aligned_cols=101 Identities=25% Similarity=0.441 Sum_probs=85.9
Q ss_pred hHHHhcCCCcEEEEEEcCCChhhHhhhHHHH---HHHHHhcCcceEEEEEccCC--------------chHHHHHHcCCC
Q 024784 132 YEQALTNGKPTVLEFYADWCEVCRELAPDVY---RVEQQYKDRVNFVMLNVDNT--------------KWEQELDEFGVE 194 (262)
Q Consensus 132 l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~---~l~~~~~~~v~~v~V~vD~~--------------~~~~l~~~~gi~ 194 (262)
...+..++|..++.|-...|++|..+..++. ++.+-+..++.++.+++... ..++++..|+++
T Consensus 35 ~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vr 114 (182)
T COG2143 35 NKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVR 114 (182)
T ss_pred HHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccc
Confidence 3445568999999999999999999987776 46666777788888887532 235899999999
Q ss_pred CccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHhCCC
Q 024784 195 GIPHFAFLDREGNEEGNVVGRLPRQYLLENVDALAHGK 232 (262)
Q Consensus 195 ~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~~~~ 232 (262)
++||++++|++|+.+..+.|+++++++...++.+.+|.
T Consensus 115 stPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ 152 (182)
T COG2143 115 STPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADGK 152 (182)
T ss_pred cCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988776
No 102
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.42 E-value=1.6e-12 Score=109.99 Aligned_cols=108 Identities=21% Similarity=0.195 Sum_probs=80.9
Q ss_pred cccccccc-ccc--ccchHHHhcCCCcEEEEEE-cCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCc---------
Q 024784 118 FGVSLKDL-SAA--ALPYEQALTNGKPTVLEFY-ADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTK--------- 183 (262)
Q Consensus 118 ~~~~l~~~-~g~--~~~l~~~~~~~k~vlV~F~-a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~--------- 183 (262)
+.|++.++ +|. ...+++ .+||++||+|| ++||++|..+++.|.++++++.+. +++++|++|...
T Consensus 9 P~f~l~~~~~g~~~~~sl~d--~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~ 86 (187)
T TIGR03137 9 KPFKATAYHNGEFVEVTDED--VKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTS 86 (187)
T ss_pred CCcEeeeccCCceeEecHHH--HCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhh
Confidence 45677663 454 344444 36899999999 999999999999999999998754 899999988531
Q ss_pred --------------hHHHHHHcCCC------CccEEEEEcCCCeEEEEEeCC----CCHHHHHHHHHH
Q 024784 184 --------------WEQELDEFGVE------GIPHFAFLDREGNEEGNVVGR----LPRQYLLENVDA 227 (262)
Q Consensus 184 --------------~~~l~~~~gi~------~~Pt~vliD~~Gkiv~~~~G~----~~~e~l~~~l~~ 227 (262)
...+++.||+. ..|++++||++|++++.+.+. ...+++.+.|+.
T Consensus 87 ~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 87 EAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred hhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 13566788886 469999999999999886542 245555555544
No 103
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.42 E-value=2.4e-12 Score=103.89 Aligned_cols=97 Identities=20% Similarity=0.318 Sum_probs=78.7
Q ss_pred cccccccccccccchHHHhcCC-CcEEEEEE-cCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCc-----------
Q 024784 118 FGVSLKDLSAAALPYEQALTNG-KPTVLEFY-ADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTK----------- 183 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~-k~vlV~F~-a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~----------- 183 (262)
+.+.+.+.+|+.+.+++. +| ++++|+|| ++||+.|....+.|+++++++.++ +.++.|+.|...
T Consensus 8 p~~~l~~~~g~~v~l~~~--~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~ 85 (149)
T cd03018 8 PDFELPDQNGQEVRLSEF--RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGL 85 (149)
T ss_pred CCcEecCCCCCEEeHHHH--cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCC
Confidence 357788888888888774 45 88888887 999999999999999999999764 999999887421
Q ss_pred --------h--HHHHHHcCCCC----c--cEEEEEcCCCeEEEEEeCCC
Q 024784 184 --------W--EQELDEFGVEG----I--PHFAFLDREGNEEGNVVGRL 216 (262)
Q Consensus 184 --------~--~~l~~~~gi~~----~--Pt~vliD~~Gkiv~~~~G~~ 216 (262)
. .++++.||+.. + |+++++|++|++++.+.|..
T Consensus 86 ~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 86 TFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred CceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCC
Confidence 1 35667888873 3 48999999999999988865
No 104
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=5.9e-13 Score=126.00 Aligned_cols=101 Identities=18% Similarity=0.440 Sum_probs=87.7
Q ss_pred cccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc---ceEEEEEccCCchHHHHHHcCCCCccEEEEEcC
Q 024784 128 AALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR---VNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDR 204 (262)
Q Consensus 128 ~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~---v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~ 204 (262)
...++.+.+..+..++|.|||+||++|+.++|++.+.++.+... +.+..||.... ..++.+|+|.++||+.++ +
T Consensus 31 t~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~--~~~~~~y~v~gyPTlkiF-r 107 (493)
T KOG0190|consen 31 TKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE--SDLASKYEVRGYPTLKIF-R 107 (493)
T ss_pred ecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh--hhhHhhhcCCCCCeEEEE-e
Confidence 44567788888999999999999999999999999999988764 66777776665 599999999999999999 9
Q ss_pred CCeEEEEEeCCCCHHHHHHHHHHHhCC
Q 024784 205 EGNEEGNVVGRLPRQYLLENVDALAHG 231 (262)
Q Consensus 205 ~Gkiv~~~~G~~~~e~l~~~l~~l~~~ 231 (262)
+|+....|.|....+.+..||.+....
T Consensus 108 nG~~~~~Y~G~r~adgIv~wl~kq~gP 134 (493)
T KOG0190|consen 108 NGRSAQDYNGPREADGIVKWLKKQSGP 134 (493)
T ss_pred cCCcceeccCcccHHHHHHHHHhccCC
Confidence 999878899999999999999885543
No 105
>smart00594 UAS UAS domain.
Probab=99.41 E-value=1.8e-12 Score=102.28 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=80.4
Q ss_pred hHHHhcCCCcEEEEEEcCCChhhHhhhHHHH---HHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCC--
Q 024784 132 YEQALTNGKPTVLEFYADWCEVCRELAPDVY---RVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREG-- 206 (262)
Q Consensus 132 l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~---~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~G-- 206 (262)
++++..++|+++|+|+++||++|..+...+. ++.+.++.++.++.+|++..+..++++.|++.++|+++++|++|
T Consensus 20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~ 99 (122)
T smart00594 20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQ 99 (122)
T ss_pred HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCc
Confidence 4556678999999999999999999887655 35566666688888999988888999999999999999999998
Q ss_pred ---eEEEEEeCCCCHHHHHHHH
Q 024784 207 ---NEEGNVVGRLPRQYLLENV 225 (262)
Q Consensus 207 ---kiv~~~~G~~~~e~l~~~l 225 (262)
+++.++.|..+.++|.+.|
T Consensus 100 ~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 100 RVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred eeEEEeccccCCCCHHHHHHhh
Confidence 5678899999999998876
No 106
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.41 E-value=1.3e-12 Score=102.02 Aligned_cols=96 Identities=9% Similarity=0.149 Sum_probs=75.0
Q ss_pred cccchHHHhcCCCcEEEEEEc--CCCh---hhHhhhHHHHHHHHHhcCcceEEEEEccC---CchHHHHHHcCCC--Ccc
Q 024784 128 AALPYEQALTNGKPTVLEFYA--DWCE---VCRELAPDVYRVEQQYKDRVNFVMLNVDN---TKWEQELDEFGVE--GIP 197 (262)
Q Consensus 128 ~~~~l~~~~~~~k~vlV~F~a--~wC~---~C~~~~p~L~~l~~~~~~~v~~v~V~vD~---~~~~~l~~~~gi~--~~P 197 (262)
+..++++.+.+++.+||.||| +||+ +|+.++|++.+..+ .+.+..||++. ..+.+++++|+|. ++|
T Consensus 7 ~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyP 82 (116)
T cd03007 7 DTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLDKESYP 82 (116)
T ss_pred ChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCCcCCCC
Confidence 455778888899999999999 7777 66666666655433 27788888864 4457899999999 999
Q ss_pred EEEEEcCCCe--EEEEEeCC-CCHHHHHHHHHHH
Q 024784 198 HFAFLDREGN--EEGNVVGR-LPRQYLLENVDAL 228 (262)
Q Consensus 198 t~vliD~~Gk--iv~~~~G~-~~~e~l~~~l~~l 228 (262)
|+++| .+|. ....+.|. ++.+.|.++|++.
T Consensus 83 Tl~lF-~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 83 VIYLF-HGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred EEEEE-eCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 99999 6674 34568886 9999999998764
No 107
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.41 E-value=1.8e-12 Score=103.37 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=81.9
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEE-cCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCc------------
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFY-ADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTK------------ 183 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~-a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~------------ 183 (262)
+.+++.+.+|+..++.+. +|++++|+|| +.||++|....+.|.+++++++.. +.++.|+.|...
T Consensus 3 p~f~l~~~~g~~~~l~~~--~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~ 80 (140)
T cd02971 3 PDFTLPATDGGEVSLSDF--KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGL 80 (140)
T ss_pred CCceeccCCCcEEehHHh--CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCC
Confidence 467888888999888876 7999999999 789999999999999999998644 999999987431
Q ss_pred --------hHHHHHHcCCCCcc---------EEEEEcCCCeEEEEEeCCCC
Q 024784 184 --------WEQELDEFGVEGIP---------HFAFLDREGNEEGNVVGRLP 217 (262)
Q Consensus 184 --------~~~l~~~~gi~~~P---------t~vliD~~Gkiv~~~~G~~~ 217 (262)
...+.+.||+...| +++++|++|++++.+.|...
T Consensus 81 ~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 81 NFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred CceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 13556778877665 89999999999999998765
No 108
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.39 E-value=1.8e-12 Score=93.88 Aligned_cols=73 Identities=19% Similarity=0.382 Sum_probs=58.4
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCC-CCHHHH
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGR-LPRQYL 221 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~-~~~e~l 221 (262)
.|.||++||++|+.+.|.+.++.++++..+.++.+| +. +.+.+||+.++||+++ ||+++ +.|. .+.+++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~~---~~a~~~~v~~vPti~i---~G~~~--~~G~~~~~~~l 71 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--DM---NEILEAGVTATPGVAV---DGELV--IMGKIPSKEEI 71 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--CH---HHHHHcCCCcCCEEEE---CCEEE--EEeccCCHHHH
Confidence 378999999999999999999999998766665555 32 3478899999999988 88887 6675 444777
Q ss_pred HHHH
Q 024784 222 LENV 225 (262)
Q Consensus 222 ~~~l 225 (262)
.+++
T Consensus 72 ~~~l 75 (76)
T TIGR00412 72 KEIL 75 (76)
T ss_pred HHHh
Confidence 7665
No 109
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.38 E-value=5.1e-12 Score=108.19 Aligned_cols=110 Identities=16% Similarity=0.144 Sum_probs=86.4
Q ss_pred cccccccccccccchHHHhcCCCcEEE-EEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCc------------
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVL-EFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTK------------ 183 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV-~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~------------ 183 (262)
+.|++.+..+ .+++.+. +||+++| +||++||++|..+++.|.+++++++++ +.+++|++|...
T Consensus 9 P~F~~~~~~g-~v~l~d~--~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~ 85 (202)
T PRK13190 9 PDFTVNTTKG-PIDLSKY--KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEER 85 (202)
T ss_pred CCcEEecCCC-cEeHHHh--CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHh
Confidence 3566666655 4666663 6787665 688999999999999999999999865 999999988421
Q ss_pred -------------hHHHHHHcCCC------CccEEEEEcCCCeEEEEE----eCCCCHHHHHHHHHHHhC
Q 024784 184 -------------WEQELDEFGVE------GIPHFAFLDREGNEEGNV----VGRLPRQYLLENVDALAH 230 (262)
Q Consensus 184 -------------~~~l~~~~gi~------~~Pt~vliD~~Gkiv~~~----~G~~~~e~l~~~l~~l~~ 230 (262)
..++++.||+. .+|++++||++|++++.. .+..+.+++...|+.+..
T Consensus 86 ~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 86 FGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred cCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 13556778874 589999999999998876 445788999999998875
No 110
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.36 E-value=3.4e-12 Score=102.07 Aligned_cols=95 Identities=21% Similarity=0.302 Sum_probs=75.9
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEEcCCChh-hHhhhHHHHHHHHHhcCc----ceEEEEEccCC-c----h---
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFYADWCEV-CRELAPDVYRVEQQYKDR----VNFVMLNVDNT-K----W--- 184 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~-C~~~~p~L~~l~~~~~~~----v~~v~V~vD~~-~----~--- 184 (262)
+.+++.+.+|+.+++.+. +||++||+||++||++ |..+.+.|.+++++++++ +.+++|+.|.. + .
T Consensus 3 p~f~l~~~~g~~~~l~~~--~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~ 80 (142)
T cd02968 3 PDFTLTDQDGRPVTLSDL--KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAY 80 (142)
T ss_pred CceEEEcCCCCEEchHHh--CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHH
Confidence 467888888888888764 7899999999999997 999999999999998753 89999998753 1 1
Q ss_pred ------------------HHHHHHcCCCC--------------ccEEEEEcCCCeEEEEEeC
Q 024784 185 ------------------EQELDEFGVEG--------------IPHFAFLDREGNEEGNVVG 214 (262)
Q Consensus 185 ------------------~~l~~~~gi~~--------------~Pt~vliD~~Gkiv~~~~G 214 (262)
..+++.||+.. .|++++||++|++++.+.|
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 81 AKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred HHHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence 24445666543 3579999999999988754
No 111
>PHA02125 thioredoxin-like protein
Probab=99.34 E-value=9.2e-12 Score=89.79 Aligned_cols=70 Identities=20% Similarity=0.381 Sum_probs=53.7
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCC-HHHH
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLP-RQYL 221 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~-~e~l 221 (262)
+++||++||++|+.+.|.|.++. +.++.||.|. ..+++++|+|.++||++ +|+.+.++.|... ..+|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~--~~~l~~~~~v~~~PT~~----~g~~~~~~~G~~~~~~~l 69 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDE--GVELTAKHHIRSLPTLV----NTSTLDRFTGVPRNVAEL 69 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCC--CHHHHHHcCCceeCeEE----CCEEEEEEeCCCCcHHHH
Confidence 78999999999999999987542 3455555555 45999999999999986 6888888888532 2445
Q ss_pred HHH
Q 024784 222 LEN 224 (262)
Q Consensus 222 ~~~ 224 (262)
++.
T Consensus 70 ~~~ 72 (75)
T PHA02125 70 KEK 72 (75)
T ss_pred HHH
Confidence 444
No 112
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.34 E-value=6.2e-12 Score=106.02 Aligned_cols=109 Identities=10% Similarity=0.198 Sum_probs=84.8
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccC------C---chHHH
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDN------T---KWEQE 187 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~------~---~~~~l 187 (262)
+.+++.+++|+.+++++ .+||++||.|||+||++|. ..+.|++++++|+++ +.++++..+. . +..++
T Consensus 6 ~~f~~~~~~G~~v~Ls~--~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f 82 (183)
T PRK10606 6 LTTVVTTIDGEVTTLEK--YAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTY 82 (183)
T ss_pred cCcEeECCCCCEEeHHH--hCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHH
Confidence 35788899999888877 4799999999999999996 588999999999876 9999998752 1 12334
Q ss_pred HH-HcCC-----------------------CCcc-------------------------------EEEEEcCCCeEEEEE
Q 024784 188 LD-EFGV-----------------------EGIP-------------------------------HFAFLDREGNEEGNV 212 (262)
Q Consensus 188 ~~-~~gi-----------------------~~~P-------------------------------t~vliD~~Gkiv~~~ 212 (262)
++ +|++ ...| +-+++|++|+++.++
T Consensus 83 ~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r~ 162 (183)
T PRK10606 83 CRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRF 162 (183)
T ss_pred HHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEEE
Confidence 43 3432 1222 268999999999999
Q ss_pred eCCCCHHH--HHHHHHHHh
Q 024784 213 VGRLPRQY--LLENVDALA 229 (262)
Q Consensus 213 ~G~~~~e~--l~~~l~~l~ 229 (262)
.....+++ |++.|++++
T Consensus 163 ~~~~~p~~~~i~~~i~~~l 181 (183)
T PRK10606 163 SPDMTPEDPIVMESIKLAL 181 (183)
T ss_pred CCCCCCCHHHHHHHHHHHh
Confidence 88776665 999998887
No 113
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.30 E-value=1.3e-11 Score=116.78 Aligned_cols=99 Identities=24% Similarity=0.426 Sum_probs=81.2
Q ss_pred cchHHHh-cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcC---cceEEEEEccCCchHHHHHHcCCCCccEEEEEcCC
Q 024784 130 LPYEQAL-TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKD---RVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDRE 205 (262)
Q Consensus 130 ~~l~~~~-~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~---~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~ 205 (262)
.++.+.. ..+++++|+||++||++|+.+.|.+.++++.+.+ ++.++.+|++..+ +.. |++.++||+++++++
T Consensus 354 ~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~---~~~-~~i~~~Pt~~~~~~~ 429 (462)
T TIGR01130 354 KNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND---VPP-FEVEGFPTIKFVPAG 429 (462)
T ss_pred cCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc---cCC-CCccccCEEEEEeCC
Confidence 3455443 4689999999999999999999999999999987 5889999988764 344 999999999999544
Q ss_pred Ce-EEEEEeCCCCHHHHHHHHHHHhCCC
Q 024784 206 GN-EEGNVVGRLPRQYLLENVDALAHGK 232 (262)
Q Consensus 206 Gk-iv~~~~G~~~~e~l~~~l~~l~~~~ 232 (262)
++ ....+.|..+.+.|.++|++.....
T Consensus 430 ~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 457 (462)
T TIGR01130 430 KKSEPVPYDGDRTLEDFSKFIAKHATFP 457 (462)
T ss_pred CCcCceEecCcCCHHHHHHHHHhcCCCC
Confidence 44 2356889999999999999887655
No 114
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.28 E-value=3.4e-11 Score=103.94 Aligned_cols=82 Identities=17% Similarity=0.324 Sum_probs=68.0
Q ss_pred CCc-EEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCC
Q 024784 139 GKP-TVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLP 217 (262)
Q Consensus 139 ~k~-vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~ 217 (262)
+++ +|+.||++||++|+.+.+.+.++...+. ++.++.+|.+..+ +++++|+|.++||++++ .+|+. +.|..+
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~-~i~~~~vD~~~~~--~~~~~~~V~~vPtl~i~-~~~~~---~~G~~~ 204 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAND-KILGEMIEANENP--DLAEKYGVMSVPKIVIN-KGVEE---FVGAYP 204 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC-ceEEEEEeCCCCH--HHHHHhCCccCCEEEEe-cCCEE---EECCCC
Confidence 445 4555999999999999999999888754 4778888887654 89999999999999987 67763 789999
Q ss_pred HHHHHHHHHH
Q 024784 218 RQYLLENVDA 227 (262)
Q Consensus 218 ~e~l~~~l~~ 227 (262)
.++|.++|++
T Consensus 205 ~~~l~~~l~~ 214 (215)
T TIGR02187 205 EEQFLEYILS 214 (215)
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 115
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.28 E-value=4.5e-11 Score=102.37 Aligned_cols=124 Identities=16% Similarity=0.195 Sum_probs=88.8
Q ss_pred cccccccccccccchHHHhcCCCc-EEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCc------------
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKP-TVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTK------------ 183 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~-vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~------------ 183 (262)
+.|++.+..| ...+.+. ..+++ +|++||++||+.|..+++.|++++++++++ +.+++|++|...
T Consensus 6 P~F~~~~~~g-~~~l~d~-~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~ 83 (203)
T cd03016 6 PNFEADTTHG-PIKFHDY-LGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEY 83 (203)
T ss_pred CCeEEecCCC-cEeHHHH-cCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHh
Confidence 3566666665 3566654 23254 456888999999999999999999999866 999999988531
Q ss_pred -------------hHHHHHHcCCC----C----ccEEEEEcCCCeEEEEEeC----CCCHHHHHHHHHHHhCCC---CCC
Q 024784 184 -------------WEQELDEFGVE----G----IPHFAFLDREGNEEGNVVG----RLPRQYLLENVDALAHGK---ASI 235 (262)
Q Consensus 184 -------------~~~l~~~~gi~----~----~Pt~vliD~~Gkiv~~~~G----~~~~e~l~~~l~~l~~~~---~~~ 235 (262)
..++++.||+. + +|+++|||++|+++..+.+ ..+.+++.+.|+++.... ...
T Consensus 84 ~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~~~~~~~~~ 163 (203)
T cd03016 84 TGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQLTDKHKVAT 163 (203)
T ss_pred cCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhHhhcCcCc
Confidence 13566788875 2 4579999999999988765 345788888888876542 344
Q ss_pred CcccccCC
Q 024784 236 PHARIVGQ 243 (262)
Q Consensus 236 ~~~~~~g~ 243 (262)
|.-=.-|+
T Consensus 164 p~~w~~g~ 171 (203)
T cd03016 164 PANWKPGD 171 (203)
T ss_pred CCCCCCCC
Confidence 44333444
No 116
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.27 E-value=2.9e-11 Score=115.73 Aligned_cols=98 Identities=33% Similarity=0.634 Sum_probs=81.8
Q ss_pred chHHHhcCCC--cEEEEEEcCCChhhHhhhHHHH-H--HHHHhcCcceEEEEEccCCc--hHHHHHHcCCCCccEEEEEc
Q 024784 131 PYEQALTNGK--PTVLEFYADWCEVCRELAPDVY-R--VEQQYKDRVNFVMLNVDNTK--WEQELDEFGVEGIPHFAFLD 203 (262)
Q Consensus 131 ~l~~~~~~~k--~vlV~F~a~wC~~C~~~~p~L~-~--l~~~~~~~v~~v~V~vD~~~--~~~l~~~~gi~~~Pt~vliD 203 (262)
.+++++.+++ +|+|+|||+||-.|+++++... + .+.+..+ +.+..+|+..++ +.+++++|++-++|++++||
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~ 542 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFGVPTYLFFG 542 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 5667776666 9999999999999999998887 3 3344444 788888886553 46889999999999999999
Q ss_pred CCCeEEEEEeCCCCHHHHHHHHHHHh
Q 024784 204 REGNEEGNVVGRLPRQYLLENVDALA 229 (262)
Q Consensus 204 ~~Gkiv~~~~G~~~~e~l~~~l~~l~ 229 (262)
++|++...+.|.++.+.+.+++++..
T Consensus 543 ~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 543 PQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CCCCcCcCCcceecHHHHHHHHHHhc
Confidence 99999888999999999999998753
No 117
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.26 E-value=8.7e-12 Score=110.29 Aligned_cols=92 Identities=25% Similarity=0.516 Sum_probs=72.7
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCC
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRL 216 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~ 216 (262)
++..++|+|||+||.+|+++.|.+.++--++++. ..+-.-.+|......++.+|||++|||+.++ .|..+..|.|..
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~--kgd~a~dYRG~R 119 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFF--KGDHAIDYRGGR 119 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEe--cCCeeeecCCCc
Confidence 5678999999999999999999999987777664 2232334555566699999999999999999 455566678889
Q ss_pred CHHHHHHHHHHHhCC
Q 024784 217 PRQYLLENVDALAHG 231 (262)
Q Consensus 217 ~~e~l~~~l~~l~~~ 231 (262)
..+.+.++-.+..+.
T Consensus 120 ~Kd~iieFAhR~a~a 134 (468)
T KOG4277|consen 120 EKDAIIEFAHRCAAA 134 (468)
T ss_pred cHHHHHHHHHhcccc
Confidence 999998887765543
No 118
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.26 E-value=6.1e-11 Score=100.38 Aligned_cols=94 Identities=23% Similarity=0.244 Sum_probs=77.1
Q ss_pred cCCCcEEEEEE-cCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCc-----------------------hHHHHHHc
Q 024784 137 TNGKPTVLEFY-ADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTK-----------------------WEQELDEF 191 (262)
Q Consensus 137 ~~~k~vlV~F~-a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~-----------------------~~~l~~~~ 191 (262)
..||++||+|| ++||+.|..+++.|.++++++.+. +.+++|+.|... ..+++++|
T Consensus 29 ~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y 108 (187)
T PRK10382 29 TEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF 108 (187)
T ss_pred hCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence 47889999999 999999999999999999999765 899999988531 13667889
Q ss_pred CC----CCc--cEEEEEcCCCeEEEEEeC----CCCHHHHHHHHHHHhC
Q 024784 192 GV----EGI--PHFAFLDREGNEEGNVVG----RLPRQYLLENVDALAH 230 (262)
Q Consensus 192 gi----~~~--Pt~vliD~~Gkiv~~~~G----~~~~e~l~~~l~~l~~ 230 (262)
|+ .++ |++++||++|++++.+.. ..+.+++.+.|+.+..
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~ 157 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQY 157 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhh
Confidence 98 356 999999999999887543 2467888888877664
No 119
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.24 E-value=3.3e-11 Score=97.93 Aligned_cols=92 Identities=26% Similarity=0.506 Sum_probs=76.0
Q ss_pred ccccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc---ceEEEEEccCCch-----------
Q 024784 119 GVSLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR---VNFVMLNVDNTKW----------- 184 (262)
Q Consensus 119 ~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~---v~~v~V~vD~~~~----------- 184 (262)
+..+...++..+...+.+ +||.|.++|.|.||++|+.+.|.|.+++++.+++ +.+++|+-|.+..
T Consensus 14 g~~l~~~~~~~~~~~~~l-~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~ 92 (157)
T KOG2501|consen 14 GNRLRKQDGTEVLASEAL-QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHG 92 (157)
T ss_pred CCeeeccCCccchHhHhh-CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCC
Confidence 355566666666555554 6799999999999999999999999999999887 9999999986531
Q ss_pred ------------HHHHHHcCCCCccEEEEEcCCCeEEEE
Q 024784 185 ------------EQELDEFGVEGIPHFAFLDREGNEEGN 211 (262)
Q Consensus 185 ------------~~l~~~~gi~~~Pt~vliD~~Gkiv~~ 211 (262)
+++..+|+|.++|++++++++|+++..
T Consensus 93 ~W~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 93 DWLAIPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred CeEEecCCCHHHHHHHHhcccCcCceeEEecCCCCEehH
Confidence 466678999999999999999988753
No 120
>PRK15000 peroxidase; Provisional
Probab=99.24 E-value=9e-11 Score=100.36 Aligned_cols=93 Identities=27% Similarity=0.368 Sum_probs=76.1
Q ss_pred CCCcEEEEEEc-CCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCch--------------------------HHHHH
Q 024784 138 NGKPTVLEFYA-DWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTKW--------------------------EQELD 189 (262)
Q Consensus 138 ~~k~vlV~F~a-~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~~--------------------------~~l~~ 189 (262)
+||++||+||+ +||+.|..+++.|.++++++.++ +.+++|++|.... .++++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 68999999998 59999999999999999999865 9999999984310 24456
Q ss_pred HcCCC------CccEEEEEcCCCeEEEEEeCC----CCHHHHHHHHHHHhC
Q 024784 190 EFGVE------GIPHFAFLDREGNEEGNVVGR----LPRQYLLENVDALAH 230 (262)
Q Consensus 190 ~~gi~------~~Pt~vliD~~Gkiv~~~~G~----~~~e~l~~~l~~l~~ 230 (262)
.||+. .+|++++||++|++++.+.|. .+.+++.+.|+.+.-
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~~ 163 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQF 163 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 78887 699999999999999987663 356777777777654
No 121
>PRK13189 peroxiredoxin; Provisional
Probab=99.23 E-value=1e-10 Score=101.65 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=83.2
Q ss_pred cccccccccccccchHHHhcCCCcE-EEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCc------------
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPT-VLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTK------------ 183 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~v-lV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~------------ 183 (262)
+.|++.+..|. ..+.+.+ +||++ |++||++||+.|..+++.|+++++++.++ +.+++|++|...
T Consensus 16 PdF~~~~~~g~-~~l~d~~-~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~ 93 (222)
T PRK13189 16 PEFEVKTTHGP-IKLPDDY-KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEK 93 (222)
T ss_pred CCcEeEcCCCC-EeeHHHh-CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHh
Confidence 35666666664 3444432 57755 55778999999999999999999999765 899999998531
Q ss_pred -------------hHHHHHHcCCC-------CccEEEEEcCCCeEEEEEe----CCCCHHHHHHHHHHHhC
Q 024784 184 -------------WEQELDEFGVE-------GIPHFAFLDREGNEEGNVV----GRLPRQYLLENVDALAH 230 (262)
Q Consensus 184 -------------~~~l~~~~gi~-------~~Pt~vliD~~Gkiv~~~~----G~~~~e~l~~~l~~l~~ 230 (262)
..++++.||+. .+|+++|||++|++++... ...+.+++...|+.+..
T Consensus 94 ~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~ 164 (222)
T PRK13189 94 LGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQT 164 (222)
T ss_pred cCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 12456778875 5799999999999988765 33567888888887754
No 122
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.22 E-value=1e-10 Score=101.13 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=85.5
Q ss_pred cccccccccccccchHHHhcCCCcE-EEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCc------------
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPT-VLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTK------------ 183 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~v-lV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~------------ 183 (262)
+.|.+.+..|....+++. +|+++ |++||++||+.|..+++.+.++++++.++ +.+++|++|...
T Consensus 9 PdF~l~t~~G~~~~~~~~--~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~ 86 (215)
T PRK13599 9 PSMEVVTTQGVKRLPEDY--AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDN 86 (215)
T ss_pred CCCEeECCCCcEecHHHH--CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHh
Confidence 457777777776555543 57765 67888999999999999999999999765 999999998631
Q ss_pred -------------hHHHHHHcCCC-------CccEEEEEcCCCeEEEEEeC----CCCHHHHHHHHHHHhC
Q 024784 184 -------------WEQELDEFGVE-------GIPHFAFLDREGNEEGNVVG----RLPRQYLLENVDALAH 230 (262)
Q Consensus 184 -------------~~~l~~~~gi~-------~~Pt~vliD~~Gkiv~~~~G----~~~~e~l~~~l~~l~~ 230 (262)
..++++.||+. .+|++++||++|+++..+.. ..+.+++.+.|+.+..
T Consensus 87 ~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~ 157 (215)
T PRK13599 87 TNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQT 157 (215)
T ss_pred cCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 12456778873 58999999999999887542 2457888888887654
No 123
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.20 E-value=1.5e-10 Score=86.46 Aligned_cols=76 Identities=17% Similarity=0.331 Sum_probs=63.5
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCC
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLP 217 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~ 217 (262)
++...+..|+++||++|....+.+.++.+.+.+ +.+..+|++... +++++|+|.++|++++ ||++++. |..+
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~-i~~~~vd~~~~~--e~a~~~~V~~vPt~vi---dG~~~~~--G~~~ 82 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPN-IEHEMIDGALFQ--DEVEERGIMSVPAIFL---NGELFGF--GRMT 82 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC-ceEEEEEhHhCH--HHHHHcCCccCCEEEE---CCEEEEe--CCCC
Confidence 455668888999999999999999999988764 899999998764 8999999999999965 7888774 7666
Q ss_pred HHHH
Q 024784 218 RQYL 221 (262)
Q Consensus 218 ~e~l 221 (262)
.+++
T Consensus 83 ~~e~ 86 (89)
T cd03026 83 LEEI 86 (89)
T ss_pred HHHH
Confidence 6554
No 124
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.19 E-value=1.1e-10 Score=81.74 Aligned_cols=63 Identities=19% Similarity=0.365 Sum_probs=52.8
Q ss_pred EEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEE
Q 024784 142 TVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEG 210 (262)
Q Consensus 142 vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~ 210 (262)
-++.||++||++|+.+.+.|.++.+.+. ++.+..+|++..+ +++++||+.++||+++ +|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~--~l~~~~~i~~vPti~i---~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFP--DLADEYGVMSVPAIVI---NGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCH--hHHHHcCCcccCEEEE---CCEEEE
Confidence 4678999999999999999999977654 4889999988765 7999999999999865 566544
No 125
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.19 E-value=6.2e-11 Score=104.96 Aligned_cols=101 Identities=21% Similarity=0.369 Sum_probs=83.3
Q ss_pred cchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc---ceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCC
Q 024784 130 LPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR---VNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREG 206 (262)
Q Consensus 130 ~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~---v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~G 206 (262)
.+++..+.....|+|.|||+||+..+.++|.+.+.++.++.. -.++...||+.....++.+|.|..|||+-++ .+|
T Consensus 4 ~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvf-rnG 82 (375)
T KOG0912|consen 4 ENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVF-RNG 82 (375)
T ss_pred ccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeee-ecc
Confidence 345667778899999999999999999999999865554322 3566666666666699999999999999999 999
Q ss_pred eEEEE-EeCCCCHHHHHHHHHHHhCC
Q 024784 207 NEEGN-VVGRLPRQYLLENVDALAHG 231 (262)
Q Consensus 207 kiv~~-~~G~~~~e~l~~~l~~l~~~ 231 (262)
.+..+ |.|.++.+.|.++|++-++.
T Consensus 83 ~~~~rEYRg~RsVeaL~efi~kq~s~ 108 (375)
T KOG0912|consen 83 EMMKREYRGQRSVEALIEFIEKQLSD 108 (375)
T ss_pred chhhhhhccchhHHHHHHHHHHHhcc
Confidence 99984 99999999999999987653
No 126
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.18 E-value=2.2e-10 Score=101.49 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=83.7
Q ss_pred cccccc-cccc--ccchHHHhcCCCcEEEEEE-cCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCc----------
Q 024784 119 GVSLKD-LSAA--ALPYEQALTNGKPTVLEFY-ADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTK---------- 183 (262)
Q Consensus 119 ~~~l~~-~~g~--~~~l~~~~~~~k~vlV~F~-a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~---------- 183 (262)
.|.+.+ .+++ .+++++.. +|+++||+|| ++||+.|..+++.+.+.++++.++ +.+++|++|...
T Consensus 76 dF~l~~~~~g~~~~vsLsd~~-kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~ 154 (261)
T PTZ00137 76 SFKGTALLNDDLVQFNSSDYF-KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDV 154 (261)
T ss_pred CCEeecccCCCceEEeHHHHc-CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhh
Confidence 455554 3443 34565532 5777888877 999999999999999999999866 999999998631
Q ss_pred ----------------hHHHHHHcCCC-----CccEEEEEcCCCeEEEEEe----CCCCHHHHHHHHHHHhC
Q 024784 184 ----------------WEQELDEFGVE-----GIPHFAFLDREGNEEGNVV----GRLPRQYLLENVDALAH 230 (262)
Q Consensus 184 ----------------~~~l~~~~gi~-----~~Pt~vliD~~Gkiv~~~~----G~~~~e~l~~~l~~l~~ 230 (262)
..++++.||+. .+|++++||++|++++.+. ...+.+++.+.|+.+..
T Consensus 155 ~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq~ 226 (261)
T PTZ00137 155 RQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQF 226 (261)
T ss_pred hhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhch
Confidence 13566788985 5899999999999998763 23467888888877663
No 127
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.3e-11 Score=113.50 Aligned_cols=96 Identities=25% Similarity=0.487 Sum_probs=76.4
Q ss_pred chHHH-hcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc--ceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCe
Q 024784 131 PYEQA-LTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR--VNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGN 207 (262)
Q Consensus 131 ~l~~~-~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~--v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gk 207 (262)
+++++ +..+|-|||.|||+||++|+++.|.+++|++.|++. +.+..+|...++ .....+.++||++++-..++
T Consensus 375 nfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd----~~~~~~~~fPTI~~~pag~k 450 (493)
T KOG0190|consen 375 NFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND----VPSLKVDGFPTILFFPAGHK 450 (493)
T ss_pred CHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc----CccccccccceEEEecCCCC
Confidence 44444 467899999999999999999999999999999886 677777776654 44567788999999944443
Q ss_pred -EEEEEeCCCCHHHHHHHHHHHhC
Q 024784 208 -EEGNVVGRLPRQYLLENVDALAH 230 (262)
Q Consensus 208 -iv~~~~G~~~~e~l~~~l~~l~~ 230 (262)
-.-.+.|.++.++|..+|++...
T Consensus 451 ~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 451 SNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred CCCcccCCCcchHHHHhhhccCCC
Confidence 35567899999999999887655
No 128
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.17 E-value=8.5e-11 Score=86.05 Aligned_cols=71 Identities=32% Similarity=0.724 Sum_probs=53.7
Q ss_pred chHHHhcCCCcEEEEEEcCCChhhHhhhHHHH---HHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcC
Q 024784 131 PYEQALTNGKPTVLEFYADWCEVCRELAPDVY---RVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDR 204 (262)
Q Consensus 131 ~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~---~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~ 204 (262)
.+.++.+++|+++|+|+++||++|+.+...+. ++.+.+.+++.++.+|++..+.....+. .++|+++|+|+
T Consensus 9 al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~---~~~P~~~~ldp 82 (82)
T PF13899_consen 9 ALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR---QGYPTFFFLDP 82 (82)
T ss_dssp HHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH---CSSSEEEEEET
T ss_pred HHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC---ccCCEEEEeCC
Confidence 45566678999999999999999999998874 4555466668888888876552222222 66999999975
No 129
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.16 E-value=3.7e-10 Score=97.59 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=83.3
Q ss_pred cccccccccccccchHHHhcCCCcEEE-EEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCch-----------
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVL-EFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTKW----------- 184 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV-~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~~----------- 184 (262)
+.|++.+..|+. .+.+.. +||+++| +||++||+.|..+++.|.++++++.++ +.+++|++|....
T Consensus 14 PdF~l~~~~G~~-~l~~~~-~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~ 91 (215)
T PRK13191 14 PEMEVITTHGKI-KLPDDY-KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKN 91 (215)
T ss_pred CCCEeecCCCCE-EcHHHh-CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHh
Confidence 456777766653 343322 5776665 778999999999999999999999765 9999999985421
Q ss_pred --------------HHHHHHcCCC-------CccEEEEEcCCCeEEEEEeCC----CCHHHHHHHHHHHhC
Q 024784 185 --------------EQELDEFGVE-------GIPHFAFLDREGNEEGNVVGR----LPRQYLLENVDALAH 230 (262)
Q Consensus 185 --------------~~l~~~~gi~-------~~Pt~vliD~~Gkiv~~~~G~----~~~e~l~~~l~~l~~ 230 (262)
.++++.||+. .+|+++|||++|++.+.+.+. .+.+++...|+.+..
T Consensus 92 ~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~ 162 (215)
T PRK13191 92 LKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQL 162 (215)
T ss_pred cCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 2455678863 479999999999999875432 467888888887653
No 130
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.12 E-value=1.1e-09 Score=87.33 Aligned_cols=100 Identities=17% Similarity=0.214 Sum_probs=85.2
Q ss_pred cchHHHhcCCCcEEEEEEcC--CChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCC
Q 024784 130 LPYEQALTNGKPTVLEFYAD--WCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREG 206 (262)
Q Consensus 130 ~~l~~~~~~~k~vlV~F~a~--wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~G 206 (262)
.++++.+..+...+|+|-.+ -++-+....-.|.++.++|.+. +.++.||+|... +++.+|||.++||++|| ++|
T Consensus 25 ~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~--~LA~~fgV~siPTLl~F-kdG 101 (132)
T PRK11509 25 SRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE--AIGDRFGVFRFPATLVF-TGG 101 (132)
T ss_pred ccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH--HHHHHcCCccCCEEEEE-ECC
Confidence 45666666666677766644 3677888888999999999854 899999999876 99999999999999999 999
Q ss_pred eEEEEEeCCCCHHHHHHHHHHHhCCC
Q 024784 207 NEEGNVVGRLPRQYLLENVDALAHGK 232 (262)
Q Consensus 207 kiv~~~~G~~~~e~l~~~l~~l~~~~ 232 (262)
+++.++.|..+.+++.++|+++++.-
T Consensus 102 k~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 102 NYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred EEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 99999999999999999999998743
No 131
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.10 E-value=6.2e-10 Score=94.99 Aligned_cols=102 Identities=18% Similarity=0.235 Sum_probs=77.2
Q ss_pred cccccchHHHhcCCCcEEEEEE-cCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCc--------------------
Q 024784 126 SAAALPYEQALTNGKPTVLEFY-ADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTK-------------------- 183 (262)
Q Consensus 126 ~g~~~~l~~~~~~~k~vlV~F~-a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~-------------------- 183 (262)
++..+.+++. +||+++|+|| ++||+.|..+++.|.++++++.++ +.+++|++|...
T Consensus 25 ~~~~v~l~d~--~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~f 102 (199)
T PTZ00253 25 SFKKISLSSY--KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAI 102 (199)
T ss_pred CCcEEeHHHH--CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCcccccc
Confidence 3455677663 6889999999 588999999999999999999876 999999998432
Q ss_pred ------hHHHHHHcCCC------CccEEEEEcCCCeEEEEEeCCC----CHHHHHHHHHHHh
Q 024784 184 ------WEQELDEFGVE------GIPHFAFLDREGNEEGNVVGRL----PRQYLLENVDALA 229 (262)
Q Consensus 184 ------~~~l~~~~gi~------~~Pt~vliD~~Gkiv~~~~G~~----~~e~l~~~l~~l~ 229 (262)
..++++.||+. .+|++++||++|++++...+.. +.+++.+.|+.+.
T Consensus 103 pll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 103 PMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred ceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 13566788885 4799999999999998876633 3344444444443
No 132
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=7.5e-10 Score=103.46 Aligned_cols=99 Identities=22% Similarity=0.454 Sum_probs=80.5
Q ss_pred HHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEE
Q 024784 133 EQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNV 212 (262)
Q Consensus 133 ~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~ 212 (262)
......+++++|+||++||++|+++.|.+.++.+.+++. +...++|+..+..++++|+|.++||+.++. .|.....+
T Consensus 41 ~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~--~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~-~~~~~~~~ 117 (383)
T KOG0191|consen 41 DFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK--VKIGAVDCDEHKDLCEKYGIQGFPTLKVFR-PGKKPIDY 117 (383)
T ss_pred HHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCc--eEEEEeCchhhHHHHHhcCCccCcEEEEEc-CCCceeec
Confidence 344567899999999999999999999999999999984 444455555556999999999999999994 45555567
Q ss_pred eCCCCHHHHHHHHHHHhCCCCC
Q 024784 213 VGRLPRQYLLENVDALAHGKAS 234 (262)
Q Consensus 213 ~G~~~~e~l~~~l~~l~~~~~~ 234 (262)
.|..+.+.+.+++...+.....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~ 139 (383)
T KOG0191|consen 118 SGPRNAESLAEFLIKELEPSVK 139 (383)
T ss_pred cCcccHHHHHHHHHHhhccccc
Confidence 7788889999998888875533
No 133
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.08 E-value=1.7e-09 Score=84.69 Aligned_cols=97 Identities=16% Similarity=0.213 Sum_probs=82.0
Q ss_pred hHHHhcCCCcEEEEEEcC----CChhhHhhh--HHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEE---
Q 024784 132 YEQALTNGKPTVLEFYAD----WCEVCRELA--PDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFL--- 202 (262)
Q Consensus 132 l~~~~~~~k~vlV~F~a~----wC~~C~~~~--p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vli--- 202 (262)
+..+.+++|.++|+|+++ ||.+|+... |.+.++. +.++.+++.|++..+..+++..+++.++|+++++
T Consensus 10 l~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~l---n~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~ 86 (116)
T cd02991 10 LNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYI---NTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLK 86 (116)
T ss_pred HHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHH---HcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEec
Confidence 444557899999999999 999998764 5555544 3458999999998888899999999999999999
Q ss_pred cCCCeEEEEEeCCCCHHHHHHHHHHHhCC
Q 024784 203 DREGNEEGNVVGRLPRQYLLENVDALAHG 231 (262)
Q Consensus 203 D~~Gkiv~~~~G~~~~e~l~~~l~~l~~~ 231 (262)
+.+.+++.++.|..+.++|...|+..++.
T Consensus 87 ~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 87 DNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred CCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 66777899999999999999999988764
No 134
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.2e-09 Score=89.34 Aligned_cols=110 Identities=19% Similarity=0.226 Sum_probs=88.5
Q ss_pred CcccccccccccccchHHHhcCCCcEEEEEE-cCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCc-----------
Q 024784 117 DFGVSLKDLSAAALPYEQALTNGKPTVLEFY-ADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTK----------- 183 (262)
Q Consensus 117 ~~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~-a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~----------- 183 (262)
.+.|++++.+++.+.+.+. .|++|||+|| ..|+|.|-.++-.+.+...++.+. +.+++|+.|...
T Consensus 10 aPdF~Lp~~~g~~v~Lsd~--~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L 87 (157)
T COG1225 10 APDFELPDQDGETVSLSDL--RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGL 87 (157)
T ss_pred CCCeEeecCCCCEEehHHh--cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC
Confidence 3579999999999888874 6889999999 999999999999999999988875 999999999642
Q ss_pred --------hHHHHHHcCCC------------CccEEEEEcCCCeEEEEEeCCCCH---HHHHHHHHHH
Q 024784 184 --------WEQELDEFGVE------------GIPHFAFLDREGNEEGNVVGRLPR---QYLLENVDAL 228 (262)
Q Consensus 184 --------~~~l~~~~gi~------------~~Pt~vliD~~Gkiv~~~~G~~~~---e~l~~~l~~l 228 (262)
..++++.||+. ..+++++||++|++++.+...... +++.+.|+++
T Consensus 88 ~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 88 TFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred CceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 34677888873 367899999999999998655444 4455555443
No 135
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.03 E-value=1.5e-09 Score=81.13 Aligned_cols=89 Identities=35% Similarity=0.738 Sum_probs=70.0
Q ss_pred CCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcC--CCCccEEEEEcCCCeEEEEEeC--
Q 024784 139 GKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFG--VEGIPHFAFLDREGNEEGNVVG-- 214 (262)
Q Consensus 139 ~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~g--i~~~Pt~vliD~~Gkiv~~~~G-- 214 (262)
++++++.||++||++|+.+.|.+.++.+++...+.++.+++.. ....+...|+ +..+|+++++ .+|+.+....+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~ 109 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDD-ENPDLAAEFGVAVRSIPTLLLF-KDGKEVDRLVGGK 109 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCC-CChHHHHHHhhhhccCCeEEEE-eCcchhhhhhhcc
Confidence 8899999999999999999999999999998667888888862 2347888898 8999999877 56665555555
Q ss_pred CCCHHHHHHHHHHHh
Q 024784 215 RLPRQYLLENVDALA 229 (262)
Q Consensus 215 ~~~~e~l~~~l~~l~ 229 (262)
..+...+......+.
T Consensus 110 ~~~~~~~~~~~~~~~ 124 (127)
T COG0526 110 VLPKEALIDALGELL 124 (127)
T ss_pred cCCHHHHHHHhcchh
Confidence 566666665555443
No 136
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.00 E-value=1e-09 Score=90.41 Aligned_cols=89 Identities=18% Similarity=0.274 Sum_probs=55.0
Q ss_pred cccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHH---HHHHHhcCcceEEEEEccCCchHHHHHHc-------
Q 024784 122 LKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVY---RVEQQYKDRVNFVMLNVDNTKWEQELDEF------- 191 (262)
Q Consensus 122 l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~---~l~~~~~~~v~~v~V~vD~~~~~~l~~~~------- 191 (262)
+.+..-....++.+.+++|+++|.++++||.+|..|..+.. ++++.++.++.-|.||.++. ..+...|
T Consensus 20 V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~--Pdid~~y~~~~~~~ 97 (163)
T PF03190_consen 20 VNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREER--PDIDKIYMNAVQAM 97 (163)
T ss_dssp S--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT---HHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccC--ccHHHHHHHHHHHh
Confidence 34444445567777789999999999999999999986444 35666665445555555543 4666655
Q ss_pred -CCCCccEEEEEcCCCeEEEEE
Q 024784 192 -GVEGIPHFAFLDREGNEEGNV 212 (262)
Q Consensus 192 -gi~~~Pt~vliD~~Gkiv~~~ 212 (262)
|..|+|+++|++++|+.+...
T Consensus 98 ~~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 98 SGSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp HS---SSEEEEE-TTS-EEEEE
T ss_pred cCCCCCCceEEECCCCCeeeee
Confidence 888999999999999998763
No 137
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.94 E-value=8.2e-09 Score=89.24 Aligned_cols=86 Identities=16% Similarity=0.275 Sum_probs=74.4
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCC---------chHHHHHHcCCCCccEEEEEcCCC-e
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNT---------KWEQELDEFGVEGIPHFAFLDREG-N 207 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~---------~~~~l~~~~gi~~~Pt~vliD~~G-k 207 (262)
.++.-|++||.+.|++|+.+.|.|..+.++|+ +.++.|++|.. ....++++|||..+|+++++++++ +
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 47788999999999999999999999999996 78999999843 235789999999999999999987 5
Q ss_pred EEEEEeCCCCHHHHHHHH
Q 024784 208 EEGNVVGRLPRQYLLENV 225 (262)
Q Consensus 208 iv~~~~G~~~~e~l~~~l 225 (262)
..-...|.++.++|.+-|
T Consensus 197 ~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEeeecCCHHHHHHhh
Confidence 555678999999887754
No 138
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=2e-09 Score=102.57 Aligned_cols=107 Identities=19% Similarity=0.441 Sum_probs=80.2
Q ss_pred chHHHhc-CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcC---cceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCC
Q 024784 131 PYEQALT-NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKD---RVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREG 206 (262)
Q Consensus 131 ~l~~~~~-~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~---~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~G 206 (262)
++..++. ..+-.+|+||++||++|+.++|.+.++++.+.+ -+.+..||.-...+..+|++|+|.++|++.++-++-
T Consensus 48 tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~ 127 (606)
T KOG1731|consen 48 TFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDS 127 (606)
T ss_pred hhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCcc
Confidence 4444443 345789999999999999999999999988764 278888898888889999999999999999996551
Q ss_pred eE--EE-EEeCCCCHHHHHHHHHHHhCCCCCCCc
Q 024784 207 NE--EG-NVVGRLPRQYLLENVDALAHGKASIPH 237 (262)
Q Consensus 207 ki--v~-~~~G~~~~e~l~~~l~~l~~~~~~~~~ 237 (262)
+- .+ .+.|.....++.+.+.+.+..+.+..+
T Consensus 128 ~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~ 161 (606)
T KOG1731|consen 128 QNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNR 161 (606)
T ss_pred ccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhc
Confidence 11 11 244555566777777777666655433
No 139
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.88 E-value=8e-08 Score=82.61 Aligned_cols=110 Identities=20% Similarity=0.336 Sum_probs=88.5
Q ss_pred cccccccccccchHHHhcCCCcEEEEEEcCCChh-hHhhhHHHHHHHHHhc----CcceEEEEEccCCc-----------
Q 024784 120 VSLKDLSAAALPYEQALTNGKPTVLEFYADWCEV-CRELAPDVYRVEQQYK----DRVNFVMLNVDNTK----------- 183 (262)
Q Consensus 120 ~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~-C~~~~p~L~~l~~~~~----~~v~~v~V~vD~~~----------- 183 (262)
|++.+.+|+...+..+ +|++++|+|..+.||. |..+...|.++.+++. ++++++.|.+|.+.
T Consensus 50 f~l~d~~G~~~~~~~l--~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 50 FELTDQDGKPFTLKDL--KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred eeeecCCCCEeecccc--CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 7888888888877764 8999999999999985 9999999999888776 23888999888542
Q ss_pred ----------------hHHHHHHcCCC---------------CccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHhCC
Q 024784 184 ----------------WEQELDEFGVE---------------GIPHFAFLDREGNEEGNVVGRLPRQYLLENVDALAHG 231 (262)
Q Consensus 184 ----------------~~~l~~~~gi~---------------~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~~~ 231 (262)
.++++++|++. ..-.++++|++|++...+.+..+++++.+.|+.++++
T Consensus 128 ~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 128 LNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred ccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 13455566554 2336788999999999988888899999999998864
No 140
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.87 E-value=1.7e-08 Score=89.23 Aligned_cols=93 Identities=15% Similarity=0.246 Sum_probs=80.5
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc---------hHHHHHHcCCCCccEEEEEcCC-Ce
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK---------WEQELDEFGVEGIPHFAFLDRE-GN 207 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~---------~~~l~~~~gi~~~Pt~vliD~~-Gk 207 (262)
.++.-||+||...|++|+++.|.|..+.++|+ +.++.|++|... ...+++++||..+|++++++++ ++
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK 226 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence 35688999999999999999999999999998 789999999652 2468999999999999999999 55
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCC
Q 024784 208 EEGNVVGRLPRQYLLENVDALAHGK 232 (262)
Q Consensus 208 iv~~~~G~~~~e~l~~~l~~l~~~~ 232 (262)
..-...|.++.++|.+-|..++..-
T Consensus 227 ~~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 227 MSPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred EEEEeeccCCHHHHHHHHHHHHhcc
Confidence 5556789999999999988887654
No 141
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.81 E-value=4.4e-08 Score=86.09 Aligned_cols=92 Identities=14% Similarity=0.194 Sum_probs=79.7
Q ss_pred CCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc---------hHHHHHHcCCCCccEEEEEcCCC-eE
Q 024784 139 GKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK---------WEQELDEFGVEGIPHFAFLDREG-NE 208 (262)
Q Consensus 139 ~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~---------~~~l~~~~gi~~~Pt~vliD~~G-ki 208 (262)
++.-|++||...|++|.++.|.|..+.++|+ +.++.|++|... ....++++||..+|+++++|++. +.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 5688999999999999999999999999998 789999998632 23567899999999999999885 56
Q ss_pred EEEEeCCCCHHHHHHHHHHHhCCC
Q 024784 209 EGNVVGRLPRQYLLENVDALAHGK 232 (262)
Q Consensus 209 v~~~~G~~~~e~l~~~l~~l~~~~ 232 (262)
.-...|.++.++|.+-|..+..+.
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVSTDF 244 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHHhcc
Confidence 666789999999999999887765
No 142
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.80 E-value=1.4e-08 Score=80.99 Aligned_cols=85 Identities=25% Similarity=0.453 Sum_probs=52.6
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHH---cCCCCccEEEEEcCCCeEEEEEeC
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDE---FGVEGIPHFAFLDREGNEEGNVVG 214 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~---~gi~~~Pt~vliD~~Gkiv~~~~G 214 (262)
.++..++.|..+|||.|....|.|.++++..++ +.+-.+..|... ++.++ .|...+|+++++|.+|++++++..
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~-i~~~~i~rd~~~--el~~~~lt~g~~~IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPN-IEVRIILRDENK--ELMDQYLTNGGRSIPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT-EEEEEE-HHHHH--HHTTTTTT-SS--SSEEEEE-TT--EEEEEES
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC-CeEEEEEecCCh--hHHHHHHhCCCeecCEEEEEcCCCCEeEEEcC
Confidence 455678889999999999999999999998754 677777776543 55554 478899999999999999999864
Q ss_pred CCCHHHHHHHHHH
Q 024784 215 RLPRQYLLENVDA 227 (262)
Q Consensus 215 ~~~~e~l~~~l~~ 227 (262)
. ++.+.+.+++
T Consensus 117 -r-P~~~~~~~~~ 127 (129)
T PF14595_consen 117 -R-PKEVQELVDE 127 (129)
T ss_dssp -S--HHHH-----
T ss_pred -C-CHHHhhcccc
Confidence 3 3445555543
No 143
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.73 E-value=7.8e-08 Score=67.42 Aligned_cols=71 Identities=20% Similarity=0.409 Sum_probs=52.9
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCch--HHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHH
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKW--EQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQY 220 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~--~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~ 220 (262)
+..|+++||++|+...+.|.+ . .+.+..+|++.... +++.+.+++.++|++++. |++ +.| .+.+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~----~--~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~---~~~---~~g-~~~~~ 68 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS----K--GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG---HKI---IVG-FDPEK 68 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH----C--CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC---CEE---Eee-CCHHH
Confidence 567999999999999887765 1 27788888886542 346778999999999763 554 556 47777
Q ss_pred HHHHHH
Q 024784 221 LLENVD 226 (262)
Q Consensus 221 l~~~l~ 226 (262)
|.++|+
T Consensus 69 i~~~i~ 74 (74)
T TIGR02196 69 LDQLLE 74 (74)
T ss_pred HHHHhC
Confidence 777763
No 144
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=5.3e-08 Score=91.04 Aligned_cols=92 Identities=21% Similarity=0.400 Sum_probs=78.2
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcC--cceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeE-EEEEeC
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKD--RVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNE-EGNVVG 214 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~--~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gki-v~~~~G 214 (262)
.+..++|.||++||++|+.++|.+.++.+.++. .+.+..+|.+ ....++..++|.++||++++ ++|.. ...+.|
T Consensus 161 ~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~--~~~~~~~~~~v~~~Pt~~~f-~~~~~~~~~~~~ 237 (383)
T KOG0191|consen 161 SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT--VHKSLASRLEVRGYPTLKLF-PPGEEDIYYYSG 237 (383)
T ss_pred cCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc--hHHHHhhhhcccCCceEEEe-cCCCcccccccc
Confidence 467899999999999999999999999998863 3667766666 45689999999999999999 66666 677888
Q ss_pred CCCHHHHHHHHHHHhCCC
Q 024784 215 RLPRQYLLENVDALAHGK 232 (262)
Q Consensus 215 ~~~~e~l~~~l~~l~~~~ 232 (262)
..+.+.+..+++......
T Consensus 238 ~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 238 LRDSDSIVSFVEKKERRN 255 (383)
T ss_pred cccHHHHHHHHHhhcCCC
Confidence 899999999999887764
No 145
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.71 E-value=9e-08 Score=63.52 Aligned_cols=62 Identities=27% Similarity=0.647 Sum_probs=50.0
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHH-HHHcCCCCccEEEEEcCC
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQE-LDEFGVEGIPHFAFLDRE 205 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l-~~~~gi~~~Pt~vliD~~ 205 (262)
++.||++||++|+.+.+.+.++ +....++.++.++++....... ...+++..+|++++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 4444559999999988763222 258999999999999654
No 146
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=8.2e-08 Score=81.69 Aligned_cols=74 Identities=16% Similarity=0.442 Sum_probs=64.8
Q ss_pred cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCchHHHHHHcCCC------CccEEEEEcCCCeEE
Q 024784 137 TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTKWEQELDEFGVE------GIPHFAFLDREGNEE 209 (262)
Q Consensus 137 ~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~~~~l~~~~gi~------~~Pt~vliD~~Gkiv 209 (262)
.+.+.++|.||+.|-+.|+...|.+.++..+|..+ .+|-.||+..-. ..+.+|+|. ++||++++ .+|+++
T Consensus 142 nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfp--d~a~kfris~s~~srQLPT~ilF-q~gkE~ 218 (265)
T KOG0914|consen 142 NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFP--DVAAKFRISLSPGSRQLPTYILF-QKGKEV 218 (265)
T ss_pred CCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCc--ChHHheeeccCcccccCCeEEEE-ccchhh
Confidence 35667899999999999999999999999999877 999999998765 789999874 79999999 899998
Q ss_pred EEEe
Q 024784 210 GNVV 213 (262)
Q Consensus 210 ~~~~ 213 (262)
.+..
T Consensus 219 ~RrP 222 (265)
T KOG0914|consen 219 SRRP 222 (265)
T ss_pred hcCc
Confidence 7643
No 147
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.61 E-value=4.2e-07 Score=65.55 Aligned_cols=73 Identities=18% Similarity=0.483 Sum_probs=53.9
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeC-CCCHHHHH
Q 024784 144 LEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVG-RLPRQYLL 222 (262)
Q Consensus 144 V~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G-~~~~e~l~ 222 (262)
|.+++++|++|..+...++++.++++ +.+-.+++.. ..++ ++|||.++|++++ ||++ ++.| ..+.++|.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~--~~~~-~~ygv~~vPalvI---ng~~--~~~G~~p~~~el~ 72 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIED--FEEI-EKYGVMSVPALVI---NGKV--VFVGRVPSKEELK 72 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTT--HHHH-HHTT-SSSSEEEE---TTEE--EEESS--HHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccC--HHHH-HHcCCCCCCEEEE---CCEE--EEEecCCCHHHHH
Confidence 34478889999999999999999985 5565556533 3355 9999999999944 6876 4667 66788888
Q ss_pred HHHH
Q 024784 223 ENVD 226 (262)
Q Consensus 223 ~~l~ 226 (262)
++|+
T Consensus 73 ~~l~ 76 (76)
T PF13192_consen 73 ELLE 76 (76)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8875
No 148
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=98.56 E-value=2.4e-07 Score=77.44 Aligned_cols=95 Identities=21% Similarity=0.351 Sum_probs=70.6
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEEcCCCh-hhHhhhHHHHHHHHHhcC---cceEEEEEccCCch---------
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFYADWCE-VCRELAPDVYRVEQQYKD---RVNFVMLNVDNTKW--------- 184 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~-~C~~~~p~L~~l~~~~~~---~v~~v~V~vD~~~~--------- 184 (262)
..|++.+.+|+.+.+++. +||++||+|..+.|+ .|..+...|.++.+++.. +++++.|++|....
T Consensus 33 ~~f~L~d~~G~~~~~~~~--~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~ 110 (174)
T PF02630_consen 33 PDFTLTDQDGKTVTLDDL--KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYA 110 (174)
T ss_dssp ST-EEEETTSSEEEGGGG--TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHH
T ss_pred CCcEEEcCCCCEecHHHh--CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHH
Confidence 348999999999888763 799999999999997 599998888888776653 49999999996421
Q ss_pred -----------------HHHHHHcCC----------------CCccEEEEEcCCCeEEEEEeC
Q 024784 185 -----------------EQELDEFGV----------------EGIPHFAFLDREGNEEGNVVG 214 (262)
Q Consensus 185 -----------------~~l~~~~gi----------------~~~Pt~vliD~~Gkiv~~~~G 214 (262)
+++++.|++ .....++++|++|+++..+.+
T Consensus 111 ~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 111 KKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 233444443 234578999999999988764
No 149
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=2.4e-06 Score=69.18 Aligned_cols=110 Identities=17% Similarity=0.268 Sum_probs=87.3
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCC------chHHHH--
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNT------KWEQEL-- 188 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~------~~~~l~-- 188 (262)
.+++.++++|+.+++++ .+||++||--.|+-|+.-.+.. .|+.++++|+++ +.+++.-.+.- ..+++.
T Consensus 6 yd~~~~~~~G~~~~l~~--~~GkVlLIVNtASkCGfTpQYe-gLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 6 YDFSVKDIDGEPVSLSD--YKGKVLLIVNTASKCGFTPQYE-GLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred ccceeeccCCCCccHHH--hCCcEEEEEEcccccCCcHhHH-HHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHH
Confidence 36888999999999988 5899999999999999988665 899999999998 88888876632 122332
Q ss_pred --HHcCCC-----------------------Ccc------------EEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHhC
Q 024784 189 --DEFGVE-----------------------GIP------------HFAFLDREGNEEGNVVGRLPRQYLLENVDALAH 230 (262)
Q Consensus 189 --~~~gi~-----------------------~~P------------t~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~~ 230 (262)
..|||+ ..| |-+++|++|++|.|+.-...++++...|+++++
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 234431 111 778999999999999988899999999999886
No 150
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.46 E-value=7e-07 Score=63.50 Aligned_cols=72 Identities=10% Similarity=0.286 Sum_probs=46.9
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCch-HHHHHH--cCCCCccEEEEEcCCCeEEEEEeCCCCHH
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKW-EQELDE--FGVEGIPHFAFLDREGNEEGNVVGRLPRQ 219 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~-~~l~~~--~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e 219 (262)
++.||++||++|+++.+.|.++ + +.+..+|++.... .+...+ +++.++|++ ++ .+|+.+. ..+..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~----~--~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~-~~g~~l~----~~~~~ 69 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL----G--AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KF-ADGSFLT----NPSAA 69 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc----C--CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EE-CCCeEec----CCCHH
Confidence 5689999999999999888654 2 3455677775541 122222 489999997 45 5776544 34445
Q ss_pred HHHHHHH
Q 024784 220 YLLENVD 226 (262)
Q Consensus 220 ~l~~~l~ 226 (262)
++.+.|+
T Consensus 70 ~~~~~l~ 76 (77)
T TIGR02200 70 QVKAKLQ 76 (77)
T ss_pred HHHHHhh
Confidence 5655543
No 151
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=98.43 E-value=1.2e-06 Score=71.84 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=69.8
Q ss_pred ccccccccc---ccccchHHHhcCCCcEEEEEE-cCCChhhHhh-hHHHHHHHHHhcCc-c-eEEEEEccCCc-------
Q 024784 118 FGVSLKDLS---AAALPYEQALTNGKPTVLEFY-ADWCEVCREL-APDVYRVEQQYKDR-V-NFVMLNVDNTK------- 183 (262)
Q Consensus 118 ~~~~l~~~~---g~~~~l~~~~~~~k~vlV~F~-a~wC~~C~~~-~p~L~~l~~~~~~~-v-~~v~V~vD~~~------- 183 (262)
+.|.+.+.. +..+.+++.. +|+++||+|| +.||+.|..+ .+.+.+.++++.+. + .+++|+.|...
T Consensus 6 PdF~l~~~~~~~g~~v~L~~~~-~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~ 84 (155)
T cd03013 6 PNVTLFEYVPGPPNPVNLSELF-KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGK 84 (155)
T ss_pred CCeEeeeeccCCCceeeHHHHh-CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHH
Confidence 456666664 7778888754 3455555555 9999999999 99999999998765 6 59999988431
Q ss_pred --------------hHHHHHHcCCC------C-----ccEEEEEcCCCeEEEEEeCCC
Q 024784 184 --------------WEQELDEFGVE------G-----IPHFAFLDREGNEEGNVVGRL 216 (262)
Q Consensus 184 --------------~~~l~~~~gi~------~-----~Pt~vliD~~Gkiv~~~~G~~ 216 (262)
..++++.||+. + ...++++| +|++++.+....
T Consensus 85 ~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~ 141 (155)
T cd03013 85 ALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEED 141 (155)
T ss_pred hhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEecC
Confidence 13566777763 1 35678888 799988766544
No 152
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.42 E-value=9.1e-07 Score=64.08 Aligned_cols=61 Identities=16% Similarity=0.287 Sum_probs=44.1
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCch---HHHHHHcCCCCccEEEEEcCCCeE
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKW---EQELDEFGVEGIPHFAFLDREGNE 208 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~---~~l~~~~gi~~~Pt~vliD~~Gki 208 (262)
|+.|+++||++|++..+.|.++. +...+.++.++.+.... +.+.+.+++.++|+++ + +|+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~-i--~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF-I--NGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE-E--CCEE
Confidence 46799999999999999999875 33336667666654331 2356678999999984 4 5654
No 153
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=98.39 E-value=4.7e-06 Score=72.76 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=82.7
Q ss_pred cccccccccccchHHHhcCCCcEEEEEEcCCChh-hHhhhHHHHHHHHHhcCc----ceEEEEEccCCc-----------
Q 024784 120 VSLKDLSAAALPYEQALTNGKPTVLEFYADWCEV-CRELAPDVYRVEQQYKDR----VNFVMLNVDNTK----------- 183 (262)
Q Consensus 120 ~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~-C~~~~p~L~~l~~~~~~~----v~~v~V~vD~~~----------- 183 (262)
|++.+.+|+...-.++ .||.+|++|..+.||. |-.++..+.++.+++..+ +.-++|.+|...
T Consensus 122 F~L~d~~Gk~~te~df--~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~ 199 (280)
T KOG2792|consen 122 FSLVDHDGKRVTEKDF--LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVS 199 (280)
T ss_pred eEEEecCCCeeccccc--ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHH
Confidence 8899999988776664 6999999999999996 999998888887776543 335777777531
Q ss_pred ---------------hHHHHHHcCCCC-c-c-------------EEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHhC
Q 024784 184 ---------------WEQELDEFGVEG-I-P-------------HFAFLDREGNEEGNVVGRLPRQYLLENVDALAH 230 (262)
Q Consensus 184 ---------------~~~l~~~~gi~~-~-P-------------t~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~~ 230 (262)
..+++++|.|.. . | .++++|++|+.+..+.-..+.+++.+.|.+.+.
T Consensus 200 eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 200 EFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred hcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 135566776642 1 3 467889999999988777888888888877654
No 154
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.39 E-value=6.6e-06 Score=70.57 Aligned_cols=42 Identities=24% Similarity=0.545 Sum_probs=34.6
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHH---HHHHHHhcCcceEEEEEc
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDV---YRVEQQYKDRVNFVMLNV 179 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L---~~l~~~~~~~v~~v~V~v 179 (262)
.+++.||+|+...||+|..+.+.+ ..+.+.+.+++.++.+.+
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 367889999999999999999876 788888887766666554
No 155
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.35 E-value=1.9e-06 Score=67.57 Aligned_cols=71 Identities=23% Similarity=0.508 Sum_probs=47.6
Q ss_pred cCCCcEEEEEEcC-------CChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc-h----HHHHH--HcCCCCccEEEEE
Q 024784 137 TNGKPTVLEFYAD-------WCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK-W----EQELD--EFGVEGIPHFAFL 202 (262)
Q Consensus 137 ~~~k~vlV~F~a~-------wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~-~----~~l~~--~~gi~~~Pt~vli 202 (262)
.++++++|+|+++ |||.|+...|.+++......++..++.+.+.... | ..+-. ++++.++||++-+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~ 96 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW 96 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence 4678899999854 9999999999999988887667888888885321 1 13333 5999999999999
Q ss_pred cCCCe
Q 024784 203 DREGN 207 (262)
Q Consensus 203 D~~Gk 207 (262)
+..++
T Consensus 97 ~~~~r 101 (119)
T PF06110_consen 97 ETGER 101 (119)
T ss_dssp TSS-E
T ss_pred CCCCc
Confidence 55433
No 156
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.33 E-value=5.5e-06 Score=72.46 Aligned_cols=83 Identities=17% Similarity=0.215 Sum_probs=62.0
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccC-----C------------------------------
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDN-----T------------------------------ 182 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~-----~------------------------------ 182 (262)
+++.+|+.|.-+.||+|+++.+++.++.+. .+.++.+.+.. .
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 578899999999999999999998887541 24454443221 0
Q ss_pred -------chHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHH
Q 024784 183 -------KWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVDAL 228 (262)
Q Consensus 183 -------~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l 228 (262)
.+.++++++||.++||+++ .||+.+ .|..+.++|.++|++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEEE--cCCeEe---eCCCCHHHHHHHHHHc
Confidence 0135567889999999985 588764 7999999999998864
No 157
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.32 E-value=1.6e-07 Score=80.68 Aligned_cols=96 Identities=19% Similarity=0.347 Sum_probs=77.9
Q ss_pred cccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCC
Q 024784 128 AALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREG 206 (262)
Q Consensus 128 ~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~G 206 (262)
++.++.+.+ .| -.++.|+++|||.|+...+.|+.++.--.+- +++..||+..+. -+..+|-+..+||++.+ ++|
T Consensus 30 ~eenw~~~l-~g-ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np--gLsGRF~vtaLptIYHv-kDG 104 (248)
T KOG0913|consen 30 DEENWKELL-TG-EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP--GLSGRFLVTALPTIYHV-KDG 104 (248)
T ss_pred cccchhhhh-ch-HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecc--ccceeeEEEecceEEEe-ecc
Confidence 455666654 33 3688999999999999999999987766655 888888888776 78889999999999999 899
Q ss_pred eEEEEEeCCCCHHHHHHHHHHHh
Q 024784 207 NEEGNVVGRLPRQYLLENVDALA 229 (262)
Q Consensus 207 kiv~~~~G~~~~e~l~~~l~~l~ 229 (262)
.. -+|.|.++.++++.+++.-.
T Consensus 105 eF-rrysgaRdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 105 EF-RRYSGARDKNDFISFEEHRE 126 (248)
T ss_pred cc-ccccCcccchhHHHHHHhhh
Confidence 75 45789999999998877543
No 158
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.31 E-value=7e-06 Score=60.20 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=56.6
Q ss_pred EEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc--hHHHHHHcC--CCCccEEEEEcCCCeEEEEEeCCCC
Q 024784 142 TVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK--WEQELDEFG--VEGIPHFAFLDREGNEEGNVVGRLP 217 (262)
Q Consensus 142 vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~--~~~l~~~~g--i~~~Pt~vliD~~Gkiv~~~~G~~~ 217 (262)
-|+.|+.+||++|.+....|+++..++.+ +.+..+|++.+. .+++.+.++ +..+|+++ + +|+.++ .
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~-i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if-i--~g~~ig------g 71 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDD-FDYRYVDIHAEGISKADLEKTVGKPVETVPQIF-V--DQKHIG------G 71 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccC-CcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE-E--CCEEEc------C
Confidence 36789999999999999999999877643 788888888653 334555555 47899986 4 676543 3
Q ss_pred HHHHHHHHHHHh
Q 024784 218 RQYLLENVDALA 229 (262)
Q Consensus 218 ~e~l~~~l~~l~ 229 (262)
.+++.++++..+
T Consensus 72 ~~~~~~~~~~~~ 83 (85)
T PRK11200 72 CTDFEAYVKENL 83 (85)
T ss_pred HHHHHHHHHHhc
Confidence 466777776543
No 159
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.25 E-value=7.9e-06 Score=72.29 Aligned_cols=86 Identities=19% Similarity=0.313 Sum_probs=62.4
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEcc---CC--------------------------------
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVD---NT-------------------------------- 182 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD---~~-------------------------------- 182 (262)
+++.+|+.|.-+.||+|+++..++.++.+.- ++.+..+.+- ..
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g--~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~ 193 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDSG--KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP 193 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhcC--ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence 5678899999999999999999998876642 2444444321 00
Q ss_pred -------------chHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Q 024784 183 -------------KWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVD 226 (262)
Q Consensus 183 -------------~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~ 226 (262)
++.++++++||.++|++++.|.+|+ +..+.|..+.++|.+.|.
T Consensus 194 ~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~-~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 194 PASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGT-LQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC-EEEecCCCCHHHHHHHhC
Confidence 0123456789999999999988885 334679999998888775
No 160
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.23 E-value=2.2e-05 Score=63.69 Aligned_cols=84 Identities=29% Similarity=0.483 Sum_probs=65.2
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHh--cCcceEEEEEccCCch-------------------------------
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQY--KDRVNFVMLNVDNTKW------------------------------- 184 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~--~~~v~~v~V~vD~~~~------------------------------- 184 (262)
+.+++|+.|+...||+|.++.+.+.++.+++ .+++.++..++.....
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 5788999999999999999999999999998 6668888887742211
Q ss_pred -----------------------------------HHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Q 024784 185 -----------------------------------EQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVDA 227 (262)
Q Consensus 185 -----------------------------------~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~ 227 (262)
.+.++++||.++||+++ +|+. +.|..+.++|.++|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i---nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI---NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE---TTCE---EETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE---CCEE---eCCCCCHHHHHHHHcC
Confidence 01113458999999988 8887 4788999999999875
No 161
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.22 E-value=1.5e-05 Score=63.80 Aligned_cols=41 Identities=32% Similarity=0.652 Sum_probs=33.6
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEc
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNV 179 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~v 179 (262)
+++++|++|+..+||+|+.+.+.+.++..++++ +.++..++
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD-VRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC-ceEEEEeC
Confidence 578899999999999999999999998887764 55555443
No 162
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.22 E-value=5.5e-06 Score=73.81 Aligned_cols=94 Identities=18% Similarity=0.366 Sum_probs=71.3
Q ss_pred CCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCC--
Q 024784 139 GKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRL-- 216 (262)
Q Consensus 139 ~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~-- 216 (262)
+..|||.||-+.++.|..+...|..|+.+|.. +.|+.|...... +...|.+..+||+++| ++|.++..++|..
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~~---~~~~f~~~~LPtllvY-k~G~l~~~~V~l~~~ 220 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKCP---ASENFPDKNLPTLLVY-KNGDLIGNFVGLTDL 220 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGCC---TTTTS-TTC-SEEEEE-ETTEEEEEECTGGGC
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhccC---cccCCcccCCCEEEEE-ECCEEEEeEEehHHh
Confidence 55799999999999999999999999999998 899999987643 6788999999999999 8999999988743
Q ss_pred -CHHHHHHHHHHHhCCCCCCCc
Q 024784 217 -PRQYLLENVDALAHGKASIPH 237 (262)
Q Consensus 217 -~~e~l~~~l~~l~~~~~~~~~ 237 (262)
..+-....|+.++..-+.+|.
T Consensus 221 ~g~df~~~dlE~~L~~~G~l~~ 242 (265)
T PF02114_consen 221 LGDDFFTEDLEAFLIEYGVLPE 242 (265)
T ss_dssp T-TT--HHHHHHHHHTTTSSS-
T ss_pred cCCCCCHHHHHHHHHHcCCCCC
Confidence 334455566666665555554
No 163
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.11 E-value=2e-05 Score=66.95 Aligned_cols=79 Identities=27% Similarity=0.362 Sum_probs=56.0
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceE--EEEEccC-C--------------------------------
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNF--VMLNVDN-T-------------------------------- 182 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~--v~V~vD~-~-------------------------------- 182 (262)
+++..++.|..++||+|+++.+.+.+ ..+++.+ +.+.+.. .
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 47889999999999999999999887 2222333 3333322 1
Q ss_pred --------chHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHH
Q 024784 183 --------KWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENV 225 (262)
Q Consensus 183 --------~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l 225 (262)
.+.++++++||.++|+++ + .+|+. +.|..+.++|.++|
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-E-CCCeE---ecCCCCHHHHHhhC
Confidence 013455678999999998 4 57876 56888888887654
No 164
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.07 E-value=3.2e-05 Score=63.75 Aligned_cols=41 Identities=27% Similarity=0.531 Sum_probs=35.5
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEE
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLN 178 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~ 178 (262)
+++++|++|+...||+|+.+.+.+.++.+++.+++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcC
Confidence 57899999999999999999999999999987776665544
No 165
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.02 E-value=5.5e-05 Score=74.16 Aligned_cols=80 Identities=19% Similarity=0.335 Sum_probs=64.7
Q ss_pred CCCcEEE-EEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCC
Q 024784 138 NGKPTVL-EFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRL 216 (262)
Q Consensus 138 ~~k~vlV-~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~ 216 (262)
-++++-| .|.++||++|......+++++....+ +..-.++....+ +++++|+|.++|++++ ||+++ +.|..
T Consensus 474 ~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~-i~~~~i~~~~~~--~~~~~~~v~~vP~~~i---~~~~~--~~G~~ 545 (555)
T TIGR03143 474 ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN-VEAEMIDVSHFP--DLKDEYGIMSVPAIVV---DDQQV--YFGKK 545 (555)
T ss_pred cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC-ceEEEEECcccH--HHHHhCCceecCEEEE---CCEEE--EeeCC
Confidence 3566644 55799999999999999999888764 777777777665 9999999999999977 66654 45888
Q ss_pred CHHHHHHHH
Q 024784 217 PRQYLLENV 225 (262)
Q Consensus 217 ~~e~l~~~l 225 (262)
+.+++.++|
T Consensus 546 ~~~~~~~~~ 554 (555)
T TIGR03143 546 TIEEMLELI 554 (555)
T ss_pred CHHHHHHhh
Confidence 999988876
No 166
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.99 E-value=4.2e-05 Score=53.18 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=45.1
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCch--HHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHH
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKW--EQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQY 220 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~--~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~ 220 (262)
++.|+++||++|..+...|.+ . .+.+..+++|.... .++.+..++.++|++++ +|+ .+.| .+.+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~----~--~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~---~~~---~i~g-~~~~~ 68 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE----R--GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI---GDE---HLSG-FRPDK 68 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH----C--CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE---CCE---EEec-CCHHH
Confidence 567899999999998777665 2 25677777775431 23333447889999975 332 3444 55666
Q ss_pred HHHH
Q 024784 221 LLEN 224 (262)
Q Consensus 221 l~~~ 224 (262)
|+++
T Consensus 69 l~~~ 72 (73)
T cd02976 69 LRAL 72 (73)
T ss_pred HHhh
Confidence 6654
No 167
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.99 E-value=5.7e-05 Score=55.67 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=52.8
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc--hHHHHHHcCC--CCccEEEEEcCCCeEEEEEeCCCCH
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK--WEQELDEFGV--EGIPHFAFLDREGNEEGNVVGRLPR 218 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~--~~~l~~~~gi--~~~Pt~vliD~~Gkiv~~~~G~~~~ 218 (262)
++.|..+|||+|.+....|.++..++.+ +.+..+|++.+. .+++.+.+|- ..+|+++ + +|+.+ | ..
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if-i--~g~~i----g--G~ 71 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKPVETVPQIF-V--DEKHV----G--GC 71 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE-E--CCEEe----c--CH
Confidence 5678899999999999999887655433 667777777433 3456666664 7899995 4 45542 3 34
Q ss_pred HHHHHHHHHH
Q 024784 219 QYLLENVDAL 228 (262)
Q Consensus 219 e~l~~~l~~l 228 (262)
++|.+++++.
T Consensus 72 ~dl~~~~~~~ 81 (86)
T TIGR02183 72 TDFEQLVKEN 81 (86)
T ss_pred HHHHHHHHhc
Confidence 6677776663
No 168
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=2.1e-05 Score=61.07 Aligned_cols=68 Identities=25% Similarity=0.533 Sum_probs=54.4
Q ss_pred cCCCcEEEEEEc--------CCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc-h----HHHHHHcCC-CCccEEEEE
Q 024784 137 TNGKPTVLEFYA--------DWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK-W----EQELDEFGV-EGIPHFAFL 202 (262)
Q Consensus 137 ~~~k~vlV~F~a--------~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~-~----~~l~~~~gi-~~~Pt~vli 202 (262)
.+|+.++|.|++ +|||.|.+..|.+.+..+....++.|+.+.+.+-+ | ..+-+..++ .++||++-+
T Consensus 23 ~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw 102 (128)
T KOG3425|consen 23 ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRW 102 (128)
T ss_pred hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEE
Confidence 367778999985 59999999999999999988888999999987532 2 244556677 899999998
Q ss_pred cC
Q 024784 203 DR 204 (262)
Q Consensus 203 D~ 204 (262)
+.
T Consensus 103 ~~ 104 (128)
T KOG3425|consen 103 KR 104 (128)
T ss_pred cC
Confidence 53
No 169
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.93 E-value=0.00019 Score=59.34 Aligned_cols=95 Identities=18% Similarity=0.413 Sum_probs=75.8
Q ss_pred chHHHhcCCCc-EEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCC--CccEEEEEcCC-C
Q 024784 131 PYEQALTNGKP-TVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVE--GIPHFAFLDRE-G 206 (262)
Q Consensus 131 ~l~~~~~~~k~-vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~--~~Pt~vliD~~-G 206 (262)
++..+...+++ +++.|..........+...+.++++.+.+++.|+.+|.+. +..+++.||+. .+|+++++|.+ +
T Consensus 86 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~--~~~~~~~~~i~~~~~P~~vi~~~~~~ 163 (184)
T PF13848_consen 86 NFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADD--FPRLLKYFGIDEDDLPALVIFDSNKG 163 (184)
T ss_dssp HHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTT--THHHHHHTTTTTSSSSEEEEEETTTS
T ss_pred hHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHH--hHHHHHHcCCCCccCCEEEEEECCCC
Confidence 56666667766 6777776677888899999999999999989999999984 45899999998 89999999844 5
Q ss_pred eEEEEEeCCCCHHHHHHHHHH
Q 024784 207 NEEGNVVGRLPRQYLLENVDA 227 (262)
Q Consensus 207 kiv~~~~G~~~~e~l~~~l~~ 227 (262)
+..+...|.++.+.+.++|+.
T Consensus 164 ~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 164 KYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEEE--SSCGCHHHHHHHHHH
T ss_pred cEEcCCCCCCCHHHHHHHhcC
Confidence 543435788999999999874
No 170
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.89 E-value=0.00016 Score=65.86 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=71.3
Q ss_pred cccccccccc-------cccchHHHhcCCCcEEEEEEcCCChhhHhhh------HHHHHHHHH-hcCc-ceEEEEEccCC
Q 024784 118 FGVSLKDLSA-------AALPYEQALTNGKPTVLEFYADWCEVCRELA------PDVYRVEQQ-YKDR-VNFVMLNVDNT 182 (262)
Q Consensus 118 ~~~~l~~~~g-------~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~------p~L~~l~~~-~~~~-v~~v~V~vD~~ 182 (262)
.+..++.++| +..++..++++-+..+|+|+.+-= .-+... ..+-++..+ +..+ +.|..||....
T Consensus 23 egLefP~YDGkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd 101 (383)
T PF01216_consen 23 EGLEFPEYDGKDRVIDLNEKNFKRALKKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKD 101 (383)
T ss_dssp ---SSSS-SSS--CEEE-TTTHHHHHHH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTT
T ss_pred hccCCccCCCccceEEcchhHHHHHHHhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHH
Confidence 3455555554 456788888888999999987753 222221 223344333 3444 89999998877
Q ss_pred chHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHhC
Q 024784 183 KWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVDALAH 230 (262)
Q Consensus 183 ~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~~ 230 (262)
. .+++++|+...++++++ ++|+++... |.++.+.|.++|-.++.
T Consensus 102 ~--klAKKLgv~E~~SiyVf-kd~~~IEyd-G~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 102 A--KLAKKLGVEEEGSIYVF-KDGEVIEYD-GERSADTLVEFLLDLLE 145 (383)
T ss_dssp H--HHHHHHT--STTEEEEE-ETTEEEEE--S--SHHHHHHHHHHHHS
T ss_pred H--HHHHhcCccccCcEEEE-ECCcEEEec-CccCHHHHHHHHHHhcc
Confidence 5 99999999999999999 999988755 99999999999999887
No 171
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=9.8e-06 Score=69.50 Aligned_cols=90 Identities=24% Similarity=0.439 Sum_probs=74.2
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCC
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLP 217 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~ 217 (262)
+++.+++.||+.||..|..+...+..+.+.. .++.++.++.+... ++++.+.+..+|+++++ ..|+.+.++.|..+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~--eis~~~~v~~vp~~~~~-~~~~~v~~l~~~~~ 91 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFP--EISNLIAVEAVPYFVFF-FLGEKVDRLSGADP 91 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhh--HHHHHHHHhcCceeeee-ecchhhhhhhccCc
Confidence 6889999999999999999998888888888 44788888777665 99999999999999998 89999999988766
Q ss_pred HHHHHHHHHHHhCCC
Q 024784 218 RQYLLENVDALAHGK 232 (262)
Q Consensus 218 ~e~l~~~l~~l~~~~ 232 (262)
.. +...++.+....
T Consensus 92 ~~-~~~~~~~~~~~~ 105 (227)
T KOG0911|consen 92 PF-LVSKVEKLAESG 105 (227)
T ss_pred HH-HHHHHHHhhhhc
Confidence 54 444555555433
No 172
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.88 E-value=9.7e-05 Score=53.13 Aligned_cols=59 Identities=17% Similarity=0.331 Sum_probs=42.3
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCch---HHHHHHcCCCCccEEEEEcCCCeE
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKW---EQELDEFGVEGIPHFAFLDREGNE 208 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~---~~l~~~~gi~~~Pt~vliD~~Gki 208 (262)
|+.|+++|||+|......|.++.. .+.++.++.+.... ..+.+.+|..++|++ ++ +|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v-~~--~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV-FI--GGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE-EE--CCEE
Confidence 567889999999999988888644 25677777665421 245566789999997 44 5654
No 173
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.87 E-value=0.00012 Score=58.33 Aligned_cols=80 Identities=10% Similarity=0.167 Sum_probs=67.5
Q ss_pred HhhhHHHHHHHHHhcCc-ceEEEEEccCCchHHHHHHcCCC--CccEEEEEcCCCeEEEE-EeCCCCHHHHHHHHHHHhC
Q 024784 155 RELAPDVYRVEQQYKDR-VNFVMLNVDNTKWEQELDEFGVE--GIPHFAFLDREGNEEGN-VVGRLPRQYLLENVDALAH 230 (262)
Q Consensus 155 ~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~~~~l~~~~gi~--~~Pt~vliD~~Gkiv~~-~~G~~~~e~l~~~l~~l~~ 230 (262)
......|.++++.++++ +.|+.+|.+... .+.+.||+. .+|++++++.++. .+. +.|.++.+.+.++++.++.
T Consensus 40 ~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~--~~~~~fgl~~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 40 NKYLEILKSVAEKFKKKPWGWLWTEAGAQL--DLEEALNIGGFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEeCcccH--HHHHHcCCCccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHc
Confidence 34578888999999999 999999999876 699999995 5999999988764 444 7799999999999999999
Q ss_pred CCCCCCc
Q 024784 231 GKASIPH 237 (262)
Q Consensus 231 ~~~~~~~ 237 (262)
|+.+.-+
T Consensus 117 Gkl~~~~ 123 (130)
T cd02983 117 GRGPTLP 123 (130)
T ss_pred CCccccc
Confidence 9964433
No 174
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.85 E-value=0.0002 Score=55.42 Aligned_cols=97 Identities=22% Similarity=0.140 Sum_probs=75.0
Q ss_pred hHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHH---hcCcceEEEEEccCCchHHHHHHcCCCC--ccEEEEEcCCC
Q 024784 132 YEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQ---YKDRVNFVMLNVDNTKWEQELDEFGVEG--IPHFAFLDREG 206 (262)
Q Consensus 132 l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~---~~~~v~~v~V~vD~~~~~~l~~~~gi~~--~Pt~vliD~~G 206 (262)
.......+.+..+.|| + =..=......+.+++++ +++++.|+.+|.+... ..++.||+.. +|.+.+.+.++
T Consensus 9 ~~~~~~~~~~~~~l~f-~-~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~--~~~~~fgl~~~~~P~i~i~~~~~ 84 (111)
T cd03072 9 AEELTEEGLPFLILFH-D-KDDLESLKEFKQAVARQLISEKGAINFLTADGDKFR--HPLLHLGKTPADLPVIAIDSFRH 84 (111)
T ss_pred HHHHhcCCCCeEEEEe-c-chHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhh--hHHHHcCCCHhHCCEEEEEcchh
Confidence 3455556767666666 1 12235677888899999 9998999999998876 4999999997 99999998766
Q ss_pred eEEEE-EeCCCCHHHHHHHHHHHhCCC
Q 024784 207 NEEGN-VVGRLPRQYLLENVDALAHGK 232 (262)
Q Consensus 207 kiv~~-~~G~~~~e~l~~~l~~l~~~~ 232 (262)
...+. ..+..+.+.|.++++.+++|+
T Consensus 85 ~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 85 MYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred cCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 33333 667889999999999999885
No 175
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.84 E-value=3.9e-05 Score=52.31 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=42.7
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc-h-HHHHHHcCCCCccEEEEEcCCCeEE
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK-W-EQELDEFGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~-~-~~l~~~~gi~~~Pt~vliD~~Gkiv 209 (262)
++.|+.+||++|++....|.+ .+ +.+..+|++... . +++.+..|..++|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~----~~--i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i---~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE----KG--IPYEEVDVDEDEEAREELKELSGVRTVPQVFI---DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH----TT--BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE---TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH----cC--CeeeEcccccchhHHHHHHHHcCCCccCEEEE---CCEEC
Confidence 567999999999999887733 33 678888888762 2 34444559999999986 66643
No 176
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.0002 Score=60.43 Aligned_cols=100 Identities=22% Similarity=0.291 Sum_probs=78.5
Q ss_pred ccchHHHhcCCCcEEEEEE-cCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCC------------------------
Q 024784 129 ALPYEQALTNGKPTVLEFY-ADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNT------------------------ 182 (262)
Q Consensus 129 ~~~l~~~~~~~k~vlV~F~-a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~------------------------ 182 (262)
.+++.+. .||.++++|| ++.-+.|--+...+.+.++++.+. +.++++++|..
T Consensus 25 ~i~l~d~--~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~Pmi 102 (194)
T COG0450 25 EITLSDY--YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMI 102 (194)
T ss_pred EEechhh--cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceE
Confidence 5566653 3599999999 999999999999999999999887 99999999953
Q ss_pred --chHHHHHHcCCC------CccEEEEEcCCCeEEEEEeC----CCCHHHHHHHHHHHhC
Q 024784 183 --KWEQELDEFGVE------GIPHFAFLDREGNEEGNVVG----RLPRQYLLENVDALAH 230 (262)
Q Consensus 183 --~~~~l~~~~gi~------~~Pt~vliD~~Gkiv~~~~G----~~~~e~l~~~l~~l~~ 230 (262)
...++++.||+. .+=.+++||++|.+.+...- .++.+++...|+.+.-
T Consensus 103 aD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq~ 162 (194)
T COG0450 103 ADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQF 162 (194)
T ss_pred EcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHHH
Confidence 124777888874 34578999999999776442 3567888888877663
No 177
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.75 E-value=0.00026 Score=54.26 Aligned_cols=89 Identities=16% Similarity=0.249 Sum_probs=62.5
Q ss_pred hHHHhc--CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCch--HHHHHHcCCC-CccEEEEEcCCC
Q 024784 132 YEQALT--NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKW--EQELDEFGVE-GIPHFAFLDREG 206 (262)
Q Consensus 132 l~~~~~--~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~--~~l~~~~gi~-~~Pt~vliD~~G 206 (262)
+++++. ..++++|+=.++.|+........+++..+...+.+.++.+++-.... .+++++|||. .-|-++++ ++|
T Consensus 10 l~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili-~~g 88 (105)
T PF11009_consen 10 LEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI-KNG 88 (105)
T ss_dssp HHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE-ETT
T ss_pred HHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE-ECC
Confidence 444444 48899998899999999999999999999888778999999875431 4789999997 58999999 999
Q ss_pred eEEEEEe-CCCCHHHH
Q 024784 207 NEEGNVV-GRLPRQYL 221 (262)
Q Consensus 207 kiv~~~~-G~~~~e~l 221 (262)
+.++.-. +.++.+.|
T Consensus 89 ~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 89 KVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEEEEGGG-SHHHH
T ss_pred EEEEECccccCCHHhc
Confidence 9998743 44666655
No 178
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00025 Score=58.21 Aligned_cols=112 Identities=18% Similarity=0.283 Sum_probs=84.6
Q ss_pred CcccccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCC------chHHHH-
Q 024784 117 DFGVSLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNT------KWEQEL- 188 (262)
Q Consensus 117 ~~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~------~~~~l~- 188 (262)
...++.++++|+.+++++ .+||++||.--|+.|+.-..--.+|..++++|+++ +.++..-.+.- .++++.
T Consensus 14 iydf~~~d~~G~~v~l~~--yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~ 91 (171)
T KOG1651|consen 14 IYDFSAKDLDGEYVSLSQ--YRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILN 91 (171)
T ss_pred eeeeEEecCCCCCccHHH--hCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHH
Confidence 346899999999999988 58999999999999999886666999999999887 78877766521 122322
Q ss_pred ---HHcCCC-------------------------------Ccc---EEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHhC
Q 024784 189 ---DEFGVE-------------------------------GIP---HFAFLDREGNEEGNVVGRLPRQYLLENVDALAH 230 (262)
Q Consensus 189 ---~~~gi~-------------------------------~~P---t~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~~ 230 (262)
.+|+.. .+. +-+++|++|+++.|+.-..++..+...|++++.
T Consensus 92 f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL~ 170 (171)
T KOG1651|consen 92 FVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLLA 170 (171)
T ss_pred HHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHhc
Confidence 233220 011 678999999999999877777778888888775
No 179
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.74 E-value=6.5e-05 Score=63.13 Aligned_cols=79 Identities=15% Similarity=0.325 Sum_probs=70.4
Q ss_pred HHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEe
Q 024784 134 QALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVV 213 (262)
Q Consensus 134 ~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~ 213 (262)
+...+..-||+.||-+.-.-|+.|...|..+++.+-+ ..|+.||+...+ -++.+++|..+|++++| ++|+.+.+++
T Consensus 79 ~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~P--Flv~kL~IkVLP~v~l~-k~g~~~D~iV 154 (211)
T KOG1672|consen 79 EEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAP--FLVTKLNIKVLPTVALF-KNGKTVDYVV 154 (211)
T ss_pred HHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCc--eeeeeeeeeEeeeEEEE-EcCEEEEEEe
Confidence 3344666789999999999999999999999999877 699999999877 78999999999999999 9999999999
Q ss_pred CCC
Q 024784 214 GRL 216 (262)
Q Consensus 214 G~~ 216 (262)
|..
T Consensus 155 GF~ 157 (211)
T KOG1672|consen 155 GFT 157 (211)
T ss_pred eHh
Confidence 864
No 180
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.69 E-value=0.00023 Score=49.10 Aligned_cols=59 Identities=17% Similarity=0.297 Sum_probs=42.5
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc--hHHHHHHcCCCCccEEEEEcCCCeEEE
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK--WEQELDEFGVEGIPHFAFLDREGNEEG 210 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~--~~~l~~~~gi~~~Pt~vliD~~Gkiv~ 210 (262)
++.|+++||++|+.....|.+.. +.+..+|++... ...+.+..+...+|++++ +|+.++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~---~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIFI---NGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE---CCEEEe
Confidence 45688999999999998888753 567778887654 234455668888998754 666544
No 181
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=0.00058 Score=53.60 Aligned_cols=92 Identities=11% Similarity=0.255 Sum_probs=74.7
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEE------
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGN------ 211 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~------ 211 (262)
..+.++|-|.-.|=|.|.++...|.++.+...+-..++-+|+|+.. .+.+-|++...|++++| =+++-+..
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~--~~~~~~~l~~p~tvmfF-fn~kHmkiD~gtgd 98 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVP--DFVKMYELYDPPTVMFF-FNNKHMKIDLGTGD 98 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhh--hhhhhhcccCCceEEEE-EcCceEEEeeCCCC
Confidence 5789999999999999999999999999999887888999999765 89999999999998877 34444332
Q ss_pred ---EeCC-CCHHHHHHHHHHHhCCC
Q 024784 212 ---VVGR-LPRQYLLENVDALAHGK 232 (262)
Q Consensus 212 ---~~G~-~~~e~l~~~l~~l~~~~ 232 (262)
+++. -+.+++.+.++.+-.|.
T Consensus 99 n~Kin~~~~~kq~~Idiie~iyRga 123 (142)
T KOG3414|consen 99 NNKINFAFEDKQEFIDIIETIYRGA 123 (142)
T ss_pred CceEEEEeccHHHHHHHHHHHHHhh
Confidence 2222 24788999998877654
No 182
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.62 E-value=0.00023 Score=51.81 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=46.0
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc------------------------------hHHHHHHcC
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK------------------------------WEQELDEFG 192 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~------------------------------~~~l~~~~g 192 (262)
|++|+...||+|..+.+.+.++.+...+++.+....+.-.. ..+++..+|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 46799999999999999999998777776666666543211 123456789
Q ss_pred CCCccEEEEEc
Q 024784 193 VEGIPHFAFLD 203 (262)
Q Consensus 193 i~~~Pt~vliD 203 (262)
+.++||+++-|
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999865
No 183
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.60 E-value=0.00089 Score=48.84 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=52.2
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc-hHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHH
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK-WEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYL 221 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~-~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l 221 (262)
+..|..+||++|......|.+ . .+.|..+|++..+ ..+.++..|...+|++++ +++ .+.| .+.+.|
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~----~--gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i---~~~---~~~G-f~~~~l 69 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES----R--GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA---GDL---SWSG-FRPDMI 69 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH----C--CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE---CCE---EEec-CCHHHH
Confidence 556889999999998877754 2 2778888888654 233345568889999965 222 3444 677888
Q ss_pred HHHHHHHhC
Q 024784 222 LENVDALAH 230 (262)
Q Consensus 222 ~~~l~~l~~ 230 (262)
.+++.....
T Consensus 70 ~~~~~~~~~ 78 (81)
T PRK10329 70 NRLHPAPHA 78 (81)
T ss_pred HHHHHhhhh
Confidence 888766543
No 184
>PHA03050 glutaredoxin; Provisional
Probab=97.59 E-value=0.0002 Score=55.31 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=40.0
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCC--c---hHHHHHHcCCCCccEEEEEcCCCeEE
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNT--K---WEQELDEFGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~--~---~~~l~~~~gi~~~Pt~vliD~~Gkiv 209 (262)
|+.|..+|||+|+.....|.+..-+.. .+..+|+|.. . ..++.+..|...+|++++ +|+.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI---~g~~i 80 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF---GKTSI 80 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE---CCEEE
Confidence 556899999999999888776532222 3455565541 1 234555668889999954 56654
No 185
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.59 E-value=0.00051 Score=66.77 Aligned_cols=81 Identities=14% Similarity=0.297 Sum_probs=63.1
Q ss_pred CCc-EEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCC
Q 024784 139 GKP-TVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLP 217 (262)
Q Consensus 139 ~k~-vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~ 217 (262)
+++ -+..|.+++||+|......+++++...+ ++.+-.+|... +.+++++|++.++|++++ +|+. .+.|..+
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~--~~~~~~~~~v~~VP~~~i---~~~~--~~~g~~~ 186 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGAL--FQDEVEARNIMAVPTVFL---NGEE--FGQGRMT 186 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchh--CHhHHHhcCCcccCEEEE---CCcE--EEecCCC
Confidence 445 4778889999999999999999888765 47766665554 459999999999999976 4554 3568888
Q ss_pred HHHHHHHHHH
Q 024784 218 RQYLLENVDA 227 (262)
Q Consensus 218 ~e~l~~~l~~ 227 (262)
.++|.+.+.+
T Consensus 187 ~~~~~~~~~~ 196 (517)
T PRK15317 187 LEEILAKLDT 196 (517)
T ss_pred HHHHHHHHhc
Confidence 8877777765
No 186
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.57 E-value=0.00051 Score=49.61 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=42.9
Q ss_pred CcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCch-HHHHHHcCCCCccEEEEEcCCCeE
Q 024784 140 KPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKW-EQELDEFGVEGIPHFAFLDREGNE 208 (262)
Q Consensus 140 k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~-~~l~~~~gi~~~Pt~vliD~~Gki 208 (262)
+.-|+.|+.+||++|.+....|.+ ++ +.+..+|++.... .++.+.+|...+|.+++ +|+.
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~----~g--i~y~~idi~~~~~~~~~~~~~g~~~vP~i~i---~g~~ 67 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKE----KG--YDFEEIPLGNDARGRSLRAVTGATTVPQVFI---GGKL 67 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHH----cC--CCcEEEECCCChHHHHHHHHHCCCCcCeEEE---CCEE
Confidence 334667899999999999988864 22 6677778876533 34555678899999964 5664
No 187
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.53 E-value=0.0012 Score=46.58 Aligned_cols=68 Identities=15% Similarity=0.231 Sum_probs=45.8
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCch-HHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHH
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKW-EQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYL 221 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~-~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l 221 (262)
++.|..+||++|.+....|.+ ++ +.+..+|++.... ..+.+..|...+|.+ ++ +|+.+ | ..+++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~----~~--i~~~~~~v~~~~~~~~~~~~~g~~~vP~i-fi--~g~~i----g--g~~~l 67 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE----NG--ISYEEIPLGKDITGRSLRAVTGAMTVPQV-FI--DGELI----G--GSDDL 67 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH----cC--CCcEEEECCCChhHHHHHHHhCCCCcCeE-EE--CCEEE----e--CHHHH
Confidence 567889999999999877764 22 6677777776542 234445688999998 45 56643 2 35666
Q ss_pred HHHH
Q 024784 222 LENV 225 (262)
Q Consensus 222 ~~~l 225 (262)
.++|
T Consensus 68 ~~~l 71 (72)
T cd03029 68 EKYF 71 (72)
T ss_pred HHHh
Confidence 6654
No 188
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00032 Score=69.08 Aligned_cols=88 Identities=19% Similarity=0.313 Sum_probs=60.3
Q ss_pred cccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHH---HHHHHhcCcceEEEEEccCCchHHHHHHc-------
Q 024784 122 LKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVY---RVEQQYKDRVNFVMLNVDNTKWEQELDEF------- 191 (262)
Q Consensus 122 l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~---~l~~~~~~~v~~v~V~vD~~~~~~l~~~~------- 191 (262)
+.+..-....++.+...+||++|....+||.+|..|..+-. ++++-++.+ ||-|.||.++-..+-+.|
T Consensus 26 V~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~--FV~IKVDREERPDvD~~Ym~~~q~~ 103 (667)
T COG1331 26 VDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN--FVPVKVDREERPDVDSLYMNASQAI 103 (667)
T ss_pred ccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC--ceeeeEChhhccCHHHHHHHHHHHh
Confidence 33443345567888889999999999999999999875443 355555554 555555543322333222
Q ss_pred -CCCCccEEEEEcCCCeEEEE
Q 024784 192 -GVEGIPHFAFLDREGNEEGN 211 (262)
Q Consensus 192 -gi~~~Pt~vliD~~Gkiv~~ 211 (262)
|-.|+|-++|+.+||+..+.
T Consensus 104 tG~GGWPLtVfLTPd~kPFfa 124 (667)
T COG1331 104 TGQGGWPLTVFLTPDGKPFFA 124 (667)
T ss_pred ccCCCCceeEEECCCCceeee
Confidence 45689999999999999764
No 189
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.44 E-value=0.0025 Score=55.53 Aligned_cols=109 Identities=14% Similarity=0.251 Sum_probs=79.5
Q ss_pred Ccccccccccccc-cchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc------------
Q 024784 117 DFGVSLKDLSAAA-LPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK------------ 183 (262)
Q Consensus 117 ~~~~~l~~~~g~~-~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~------------ 183 (262)
.++..+..++|.. ..+-+..+.++|.||+|.+-.||+=..-...++++.++|.+.++|+.|=+.+-.
T Consensus 79 APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~ 158 (237)
T PF00837_consen 79 APNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPY 158 (237)
T ss_pred CCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCce
Confidence 4557788888888 888888889999999999999999999999999999999987666666443210
Q ss_pred ----h----H--HH----------------------HHHcCCCCccE-EEEEcCCCeEEEE-EeCC--CCHHHHHHHHHH
Q 024784 184 ----W----E--QE----------------------LDEFGVEGIPH-FAFLDREGNEEGN-VVGR--LPRQYLLENVDA 227 (262)
Q Consensus 184 ----~----~--~l----------------------~~~~gi~~~Pt-~vliD~~Gkiv~~-~~G~--~~~e~l~~~l~~ 227 (262)
. + .. .+.|| .+|. ++++ .+|++++. ..|. ...++++++|++
T Consensus 159 ~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~Yg--A~PeRlyIi-~~gkv~Y~Gg~GP~~y~~~e~r~~L~~ 235 (237)
T PF00837_consen 159 EIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYG--ALPERLYII-QDGKVVYKGGPGPFGYSPEELREWLEK 235 (237)
T ss_pred eecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhC--CCcceEEEE-ECCEEEEeCCCCCCcCCHHHHHHHHHh
Confidence 0 0 11 12333 3565 4455 79999876 3343 357899999987
Q ss_pred H
Q 024784 228 L 228 (262)
Q Consensus 228 l 228 (262)
+
T Consensus 236 ~ 236 (237)
T PF00837_consen 236 Y 236 (237)
T ss_pred c
Confidence 5
No 190
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.41 E-value=0.00093 Score=47.26 Aligned_cols=68 Identities=15% Similarity=0.254 Sum_probs=45.5
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc-hHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHH
Q 024784 144 LEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK-WEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLL 222 (262)
Q Consensus 144 V~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~-~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~ 222 (262)
..|..+||++|++....|.+ . .+.+..+|++.+. ..+.++..|..++|++++ +|+. .+.| .+++.|.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~----~--~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~---~g~~--~~~G-~~~~~~~ 69 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE----H--GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA---DGDL--SWSG-FRPDKLK 69 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH----C--CCceEEEECCCCHHHHHHHHHcCCcccCEEEE---CCCc--EEec-cCHHHHH
Confidence 46779999999999988865 2 2677778887654 223344568889999755 3332 3444 6667665
Q ss_pred H
Q 024784 223 E 223 (262)
Q Consensus 223 ~ 223 (262)
+
T Consensus 70 ~ 70 (72)
T TIGR02194 70 A 70 (72)
T ss_pred h
Confidence 4
No 191
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.40 E-value=0.00084 Score=51.65 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=61.2
Q ss_pred ccchHHHhcCCCcEEEEEEcCCChhh---HhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCC
Q 024784 129 ALPYEQALTNGKPTVLEFYADWCEVC---RELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDRE 205 (262)
Q Consensus 129 ~~~l~~~~~~~k~vlV~F~a~wC~~C---~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~ 205 (262)
..++++.+..+...++ |++..|.-+ ....=.|-++.+.+.+.+....+.-+ ...++..+||+..+|+++|+ ++
T Consensus 16 ~~~ld~~l~~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~--~e~~L~~r~gv~~~PaLvf~-R~ 91 (107)
T PF07449_consen 16 ADTLDAFLAAPGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARA--AERALAARFGVRRWPALVFF-RD 91 (107)
T ss_dssp CCCHHHHHHCCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHH--HHHHHHHHHT-TSSSEEEEE-ET
T ss_pred hhhHHHHHhCCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECch--hHHHHHHHhCCccCCeEEEE-EC
Confidence 4456667666666555 555555444 44444666777888886555555533 33589999999999999999 99
Q ss_pred CeEEEEEeCCCCHHH
Q 024784 206 GNEEGNVVGRLPRQY 220 (262)
Q Consensus 206 Gkiv~~~~G~~~~e~ 220 (262)
|+.++.+.|..+-++
T Consensus 92 g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 92 GRYLGAIEGIRDWAD 106 (107)
T ss_dssp TEEEEEEESSSTHHH
T ss_pred CEEEEEecCeecccc
Confidence 999999999877554
No 192
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.40 E-value=0.00055 Score=49.09 Aligned_cols=58 Identities=16% Similarity=0.310 Sum_probs=39.8
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc--hHHHHHHcCCCCccEEEEEcCCCeEE
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK--WEQELDEFGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~--~~~l~~~~gi~~~Pt~vliD~~Gkiv 209 (262)
|+.|+.+|||+|.+....|.+. + +.+..+|++.+. .+++.+..|...+|+++ + +|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~----~--i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~-i--~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK----G--VTFTEIRVDGDPALRDEMMQRSGRRTVPQIF-I--GDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc----C--CCcEEEEecCCHHHHHHHHHHhCCCCcCEEE-E--CCEEE
Confidence 3568899999999999888752 2 455556666543 34555666888999984 4 56543
No 193
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.38 E-value=0.00066 Score=47.97 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=40.1
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc--hHHHHHHcCCC-CccEEEEEcCCCeEE
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK--WEQELDEFGVE-GIPHFAFLDREGNEE 209 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~--~~~l~~~~gi~-~~Pt~vliD~~Gkiv 209 (262)
++.|+.+||++|......|++ + .+.+..++++... ..++.+.++.. ++|+++ + +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~----~--~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~-i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK----K--GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF-I--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH----C--CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE-E--CCEEE
Confidence 467889999999999888875 2 2567777777642 23445566776 899874 4 56543
No 194
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.38 E-value=0.00059 Score=49.66 Aligned_cols=80 Identities=15% Similarity=0.300 Sum_probs=58.2
Q ss_pred EEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCC-eEEEEEeCCCCHHH
Q 024784 142 TVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREG-NEEGNVVGRLPRQY 220 (262)
Q Consensus 142 vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~G-kiv~~~~G~~~~e~ 220 (262)
.|+.|..+.|+-|......|.++..... +.+..||++.++ ++.++|+. .+|.+.+-+..+ .......+.++.+.
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~--~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~ 75 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDP--ELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQ 75 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTH--HHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHH
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCH--HHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHH
Confidence 3678899999999999988888655544 789999999665 89999997 599976643111 11234557789999
Q ss_pred HHHHHH
Q 024784 221 LLENVD 226 (262)
Q Consensus 221 l~~~l~ 226 (262)
+.++|+
T Consensus 76 L~~~L~ 81 (81)
T PF05768_consen 76 LRAWLE 81 (81)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999885
No 195
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.26 E-value=0.0024 Score=62.12 Aligned_cols=82 Identities=18% Similarity=0.426 Sum_probs=62.6
Q ss_pred CCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCH
Q 024784 139 GKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPR 218 (262)
Q Consensus 139 ~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~ 218 (262)
++.-+..|.++.||+|......+++++....+ +..-.+|.. .+.+++++|++.++|++++ +|+. .+.|..+.
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~-i~~~~id~~--~~~~~~~~~~v~~VP~~~i---~~~~--~~~g~~~~ 188 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNPN-ISHTMIDGA--LFQDEVEALGIQGVPAVFL---NGEE--FHNGRMDL 188 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC-ceEEEEEch--hCHHHHHhcCCcccCEEEE---CCcE--EEecCCCH
Confidence 34447788899999999988888888888764 665555544 4559999999999999976 4554 35688888
Q ss_pred HHHHHHHHHH
Q 024784 219 QYLLENVDAL 228 (262)
Q Consensus 219 e~l~~~l~~l 228 (262)
+++.+.+...
T Consensus 189 ~~~~~~l~~~ 198 (515)
T TIGR03140 189 AELLEKLEET 198 (515)
T ss_pred HHHHHHHhhc
Confidence 8887777654
No 196
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.20 E-value=0.0028 Score=49.06 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=58.4
Q ss_pred hhHhhhHHHHHHHHHhc-CcceEEEEEccCCchHHHHHHcCCCC----ccEEEEEcCCCeEEEEEeCCC-CHHHHHHHHH
Q 024784 153 VCRELAPDVYRVEQQYK-DRVNFVMLNVDNTKWEQELDEFGVEG----IPHFAFLDREGNEEGNVVGRL-PRQYLLENVD 226 (262)
Q Consensus 153 ~C~~~~p~L~~l~~~~~-~~v~~v~V~vD~~~~~~l~~~~gi~~----~Pt~vliD~~Gkiv~~~~G~~-~~e~l~~~l~ 226 (262)
.=......+.++++.++ +++.|+.+|.+... ..++.||+.. +|.+.++|.++ ..+...+.. +.+.|.++++
T Consensus 32 ~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~--~~l~~fgl~~~~~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~ 108 (111)
T cd03073 32 GTNYWRNRVLKVAKDFPDRKLNFAVADKEDFS--HELEEFGLDFSGGEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLE 108 (111)
T ss_pred HHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHH--HHHHHcCCCcccCCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHH
Confidence 34567888999999999 68889988888654 5889999984 99999998766 333356777 8899999988
Q ss_pred HH
Q 024784 227 AL 228 (262)
Q Consensus 227 ~l 228 (262)
..
T Consensus 109 ~f 110 (111)
T cd03073 109 DF 110 (111)
T ss_pred Hh
Confidence 65
No 197
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.20 E-value=0.0016 Score=49.37 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=37.4
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCch-H----HHHHHcCCCCccEEEEEcCCCeEE
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKW-E----QELDEFGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~-~----~l~~~~gi~~~Pt~vliD~~Gkiv 209 (262)
++.|..+|||+|.+....|.+. + +.+..+|+|..+. . .+.+..|...+|.+ ++ +|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~----~--i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V-fi--~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL----G--VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV-FV--GGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----C--CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE-EE--CCEEE
Confidence 5568899999999988766553 3 4455666664432 2 23334477899998 44 56543
No 198
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.18 E-value=0.0016 Score=46.08 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=42.0
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc--hHHHHHHcCCCCccEEEEEcCCCeEEE
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK--WEQELDEFGVEGIPHFAFLDREGNEEG 210 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~--~~~l~~~~gi~~~Pt~vliD~~Gkiv~ 210 (262)
++.|..+||++|++....|.+ .+ +.+..+|++... ..++.+..+-..+|++++ +|+.++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~----~g--i~~~~~di~~~~~~~~el~~~~g~~~vP~v~i---~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE----KG--LPYVEINIDIFPERKAELEERTGSSVVPQIFF---NEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH----CC--CceEEEECCCCHHHHHHHHHHhCCCCcCEEEE---CCEEEe
Confidence 456889999999999877775 22 567777877643 345666678888999854 555443
No 199
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.18 E-value=0.0032 Score=61.78 Aligned_cols=92 Identities=20% Similarity=0.157 Sum_probs=73.7
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEE-EEEeCCC
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEE-GNVVGRL 216 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv-~~~~G~~ 216 (262)
++.+.|+.|+.+.|.+|.++...|+++. .+.+++.+...|.+.+. +++++|++...|++.++|.+|+.. -++.|..
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~~--~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P 441 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEEP--ESETLPKITKLPTVALLDDDGNYTGLKFHGVP 441 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccch--hhHhhcCCCcCCEEEEEeCCCcccceEEEecC
Confidence 3455677888889999999998888887 45566778777766554 899999999999999997777643 3677877
Q ss_pred CHHHHHHHHHHHhCCC
Q 024784 217 PRQYLLENVDALAHGK 232 (262)
Q Consensus 217 ~~e~l~~~l~~l~~~~ 232 (262)
.-.+|..+|..++...
T Consensus 442 ~G~Ef~s~i~~i~~~~ 457 (555)
T TIGR03143 442 SGHELNSFILALYNAA 457 (555)
T ss_pred ccHhHHHHHHHHHHhc
Confidence 7889999999998755
No 200
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0022 Score=52.88 Aligned_cols=111 Identities=19% Similarity=0.261 Sum_probs=73.4
Q ss_pred cccccccccccccchHHHhcCCCcEEEEEE-cCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCc------------
Q 024784 118 FGVSLKDLSAAALPYEQALTNGKPTVLEFY-ADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTK------------ 183 (262)
Q Consensus 118 ~~~~l~~~~g~~~~l~~~~~~~k~vlV~F~-a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~------------ 183 (262)
+.++++|.+|..+.+..+. .++++|++|| +..-|-|-+..=.+.+-+++++.. ..+++++.|...
T Consensus 70 PD~tL~dedg~sisLkkit-~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~sKqnlP 148 (211)
T KOG0855|consen 70 PDFTLKDEDGKSISLKKIT-GNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFASKQNLP 148 (211)
T ss_pred CCcccccCCCCeeeeeeec-CCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhhhhccCC
Confidence 4688999999999888754 4558999999 666677877776777777777663 789999988542
Q ss_pred -------hHHHHHHcCCCCcc-------EEEEEcCCCeEEEEEeCCCC-HHHHHHHHHHHh
Q 024784 184 -------WEQELDEFGVEGIP-------HFAFLDREGNEEGNVVGRLP-RQYLLENVDALA 229 (262)
Q Consensus 184 -------~~~l~~~~gi~~~P-------t~vliD~~Gkiv~~~~G~~~-~e~l~~~l~~l~ 229 (262)
..++.+.+|+...| ..++||++|-........++ +-.+.+.++.+.
T Consensus 149 YhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k~~~ 209 (211)
T KOG0855|consen 149 YHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEALKFLK 209 (211)
T ss_pred eeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEEEEecccCccccHHHHHHHHh
Confidence 13666777876554 56667666544333333333 334444444443
No 201
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.10 E-value=0.006 Score=48.38 Aligned_cols=92 Identities=14% Similarity=0.290 Sum_probs=69.8
Q ss_pred cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeC--
Q 024784 137 TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVG-- 214 (262)
Q Consensus 137 ~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G-- 214 (262)
..+|.++|-|..+|=+.|.++...|.+++++.+.-..++.+|+++.+ .+-+.|.+. .|.+++|==+++-+..-.|
T Consensus 18 e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vp--dfn~~yel~-dP~tvmFF~rnkhm~vD~Gtg 94 (133)
T PF02966_consen 18 EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVP--DFNQMYELY-DPCTVMFFFRNKHMMVDFGTG 94 (133)
T ss_dssp -SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTH--CCHHHTTS--SSEEEEEEETTEEEEEESSSS
T ss_pred cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccch--hhhcccccC-CCeEEEEEecCeEEEEEecCC
Confidence 46899999999999999999999999999999987889999999765 688889998 7865544235665543222
Q ss_pred -------C-CCHHHHHHHHHHHhCC
Q 024784 215 -------R-LPRQYLLENVDALAHG 231 (262)
Q Consensus 215 -------~-~~~e~l~~~l~~l~~~ 231 (262)
. .+.+++.+.++.+-.|
T Consensus 95 nnnKin~~~~~kqe~iDiie~iyrg 119 (133)
T PF02966_consen 95 NNNKINWAFEDKQEFIDIIETIYRG 119 (133)
T ss_dssp SSSSBCS--SCHHHHHHHHHHHHHH
T ss_pred CccEEEEEcCcHHHHHHHHHHHHHH
Confidence 2 2378899988887654
No 202
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0066 Score=44.12 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=44.0
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCch---HHHHHHc-CCCCccEEEEEcCCCeEEEEEeCCCCH
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKW---EQELDEF-GVEGIPHFAFLDREGNEEGNVVGRLPR 218 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~---~~l~~~~-gi~~~Pt~vliD~~Gkiv~~~~G~~~~ 218 (262)
++.|..+|||+|......|.+ . .+.+..++++.... .+.++.. |...+|.+++ +|+. +.|..+.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~----~--g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i---~~~~---igg~~d~ 70 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR----K--GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI---GGKH---VGGCDDL 70 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH----c--CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE---CCEE---EeCcccH
Confidence 566889999999998877772 2 26677777776552 2334444 8899999876 4442 2344455
Q ss_pred HHHH
Q 024784 219 QYLL 222 (262)
Q Consensus 219 e~l~ 222 (262)
+.+.
T Consensus 71 ~~~~ 74 (80)
T COG0695 71 DALE 74 (80)
T ss_pred HHHH
Confidence 5443
No 203
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.01 E-value=0.003 Score=46.85 Aligned_cols=62 Identities=15% Similarity=0.288 Sum_probs=40.7
Q ss_pred CCCcEEEEEEc----CCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc--hHHHHHHcCCCCccEEEEEcCCCeE
Q 024784 138 NGKPTVLEFYA----DWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK--WEQELDEFGVEGIPHFAFLDREGNE 208 (262)
Q Consensus 138 ~~k~vlV~F~a----~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~--~~~l~~~~gi~~~Pt~vliD~~Gki 208 (262)
++++|+|+-.+ +||++|.+....|.+.. +.+..+|++.+. ..++.+..|...+|.+ |+ +|+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~v-fi--~g~~ 73 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQL-YV--NGEL 73 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE-EE--CCEE
Confidence 34566666543 79999999887777642 456666665443 1344455688899997 44 5654
No 204
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.94 E-value=0.0039 Score=52.13 Aligned_cols=33 Identities=18% Similarity=0.667 Sum_probs=26.1
Q ss_pred EEEcCCChhhHhhhHHHHHHHHHhcCcceEEEE
Q 024784 145 EFYADWCEVCRELAPDVYRVEQQYKDRVNFVML 177 (262)
Q Consensus 145 ~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V 177 (262)
.|.-|.|++|-...|.|.++.++++.++.+-.|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 588999999999999999999999988655554
No 205
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.85 E-value=0.0047 Score=46.58 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=41.1
Q ss_pred CCCcEEEEEEc----CCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc--hHHHHHHcCCCCccEEEEEcCCCeEE
Q 024784 138 NGKPTVLEFYA----DWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK--WEQELDEFGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 138 ~~k~vlV~F~a----~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~--~~~l~~~~gi~~~Pt~vliD~~Gkiv 209 (262)
+.++|+|+-.. +|||+|......|.+. + +.+..+|++... ..++.+..|...+|.+++ +|+.+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~----~--i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi---~g~~i 78 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKAC----G--VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV---KGEFV 78 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHc----C--CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE---CCEEE
Confidence 34566666553 8999999998777663 2 556677776443 124445567788999854 56543
No 206
>PRK10638 glutaredoxin 3; Provisional
Probab=96.77 E-value=0.0058 Score=44.37 Aligned_cols=59 Identities=17% Similarity=0.317 Sum_probs=40.8
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc--hHHHHHHcCCCCccEEEEEcCCCeEEE
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK--WEQELDEFGVEGIPHFAFLDREGNEEG 210 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~--~~~l~~~~gi~~~Pt~vliD~~Gkiv~ 210 (262)
++.|..+||++|.+....|.+. + +.+..+|++... .+++.+..|...+|++++ +|+.++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~----g--i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~---~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK----G--VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI---DAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc----C--CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE---CCEEEe
Confidence 5567789999999998777752 2 556667776553 235556668889998744 566543
No 207
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=96.76 E-value=0.011 Score=55.24 Aligned_cols=93 Identities=10% Similarity=0.062 Sum_probs=64.6
Q ss_pred CCCcEEEEEEcCCChhhHhhh--HHHHHH-HHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeC
Q 024784 138 NGKPTVLEFYADWCEVCRELA--PDVYRV-EQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVG 214 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~--p~L~~l-~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G 214 (262)
.++.++|.|-+..-....++. -..... .+.+...+..|.|........+++.-|-+..+|.+++|+..|..+.++.|
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevitg 96 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVITG 96 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEeec
Confidence 344455555555555555554 222222 22233325555555556666788899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhC
Q 024784 215 RLPRQYLLENVDALAH 230 (262)
Q Consensus 215 ~~~~e~l~~~l~~l~~ 230 (262)
.+..|+|...|+++.-
T Consensus 97 ~v~adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 97 FVTADELASSIEKVWL 112 (506)
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999998888665
No 208
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=96.75 E-value=0.016 Score=48.09 Aligned_cols=37 Identities=19% Similarity=0.450 Sum_probs=29.3
Q ss_pred EEEEEEcCCChhhHhhhHHHHHHHHHhcC-cceEEEEE
Q 024784 142 TVLEFYADWCEVCRELAPDVYRVEQQYKD-RVNFVMLN 178 (262)
Q Consensus 142 vlV~F~a~wC~~C~~~~p~L~~l~~~~~~-~v~~v~V~ 178 (262)
+|.+|+..-||+|....+.|.++.+.+.+ ++.+..+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 47788899999999999999999999943 24444443
No 209
>PRK10824 glutaredoxin-4; Provisional
Probab=96.44 E-value=0.012 Score=45.88 Aligned_cols=64 Identities=11% Similarity=0.161 Sum_probs=39.6
Q ss_pred CCCcEEEEEEc----CCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc--hHHHHHHcCCCCccEEEEEcCCCeEEE
Q 024784 138 NGKPTVLEFYA----DWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK--WEQELDEFGVEGIPHFAFLDREGNEEG 210 (262)
Q Consensus 138 ~~k~vlV~F~a----~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~--~~~l~~~~gi~~~Pt~vliD~~Gkiv~ 210 (262)
+.++|+|+-.+ +|||+|......|.++ + +.+..+|++.+. ...+.+.-|...+|.+++ +|+.++
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~----~--i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI---~G~~IG 82 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSAC----G--ERFAYVDILQNPDIRAELPKYANWPTFPQLWV---DGELVG 82 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHc----C--CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE---CCEEEc
Confidence 34566666554 6999999998777764 2 334445665442 123333447778998866 676553
No 210
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=96.40 E-value=0.044 Score=40.38 Aligned_cols=87 Identities=16% Similarity=0.202 Sum_probs=60.6
Q ss_pred hHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEE
Q 024784 132 YEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGN 211 (262)
Q Consensus 132 l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~ 211 (262)
+...+..+++++|-|+.++|. .+...+.++++.+.+.+.|..+. . .++++++++. .|+++++-+..+....
T Consensus 10 l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~--~---~~~~~~~~~~-~~~i~l~~~~~~~~~~ 80 (97)
T cd02981 10 LEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS--D---KEVAKKLKVK-PGSVVLFKPFEEEPVE 80 (97)
T ss_pred HHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC--h---HHHHHHcCCC-CCceEEeCCcccCCcc
Confidence 334456788999999999997 45667778888887656654444 2 2678888876 4888888332233344
Q ss_pred EeCCCCHHHHHHHHHH
Q 024784 212 VVGRLPRQYLLENVDA 227 (262)
Q Consensus 212 ~~G~~~~e~l~~~l~~ 227 (262)
+.|..+.+.|.+||..
T Consensus 81 y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 81 YDGEFTEESLVEFIKD 96 (97)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 7787788899998864
No 211
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.04 Score=47.97 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=26.4
Q ss_pred CCcEEEEEEcCCChhhHhhhHHHHHHHHHhcC
Q 024784 139 GKPTVLEFYADWCEVCRELAPDVYRVEQQYKD 170 (262)
Q Consensus 139 ~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~ 170 (262)
++++++.|+-..||+|++..+.+.+.+...++
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 47889999999999999989998886666555
No 212
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.028 Score=43.01 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=38.8
Q ss_pred CCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHH----cCCCCccEEEEEcCCCeEE
Q 024784 139 GKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDE----FGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 139 ~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~----~gi~~~Pt~vliD~~Gkiv 209 (262)
.++| |.|.-+||++|......|.+ ++....++.+|-+... .++-+. -|...+|.+++ +|+.+
T Consensus 13 ~~~V-VifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g-~eiq~~l~~~tg~~tvP~vFI---~Gk~i 78 (104)
T KOG1752|consen 13 ENPV-VIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDG-SEIQKALKKLTGQRTVPNVFI---GGKFI 78 (104)
T ss_pred cCCE-EEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCc-HHHHHHHHHhcCCCCCCEEEE---CCEEE
Confidence 3444 45888999999996655555 5544566666666433 233222 24568998866 77765
No 213
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=95.99 E-value=0.19 Score=40.40 Aligned_cols=92 Identities=10% Similarity=0.087 Sum_probs=67.9
Q ss_pred hcCCCcEEEEEEcCCCh----hhHhhh--HHHHHHHHHhcCcceEEEEEccCCchH----------------HHHHHcCC
Q 024784 136 LTNGKPTVLEFYADWCE----VCRELA--PDVYRVEQQYKDRVNFVMLNVDNTKWE----------------QELDEFGV 193 (262)
Q Consensus 136 ~~~~k~vlV~F~a~wC~----~C~~~~--p~L~~l~~~~~~~v~~v~V~vD~~~~~----------------~l~~~~gi 193 (262)
..+.|+.+|+...+.-. .|+..+ +.+-++ ++.++.+.+-|+..+++. ..++.++.
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~f---l~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~ 94 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQY---LSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKT 94 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHH---HHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCc
Confidence 45689999999988763 466653 344443 445688999998876532 34567789
Q ss_pred CCccEEEEEcCCC---eEEEEEeCCCCHHHHHHHHHHHhC
Q 024784 194 EGIPHFAFLDREG---NEEGNVVGRLPRQYLLENVDALAH 230 (262)
Q Consensus 194 ~~~Pt~vliD~~G---kiv~~~~G~~~~e~l~~~l~~l~~ 230 (262)
..+|.+.++-+.. .++.++.|..+.+++.+.|...++
T Consensus 95 ~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 95 DQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred CCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 9999999885443 678899999999999988877653
No 214
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=95.85 E-value=0.029 Score=43.28 Aligned_cols=60 Identities=17% Similarity=0.328 Sum_probs=52.2
Q ss_pred ccccccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccC
Q 024784 119 GVSLKDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDN 181 (262)
Q Consensus 119 ~~~l~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~ 181 (262)
.++..+++|+.+++++ .+||++||.-.|+.|+.-. .-..|++++++|+++ +.++..-.+.
T Consensus 3 df~~~~~~G~~v~l~~--y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSK--YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GSEEEBTTSSEEEGGG--GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred ceeeeCCCCCEECHHH--cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 4778899999999987 5899999999999999988 667999999999976 8899988764
No 215
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=95.51 E-value=0.14 Score=40.35 Aligned_cols=99 Identities=11% Similarity=0.172 Sum_probs=63.1
Q ss_pred cccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHH-HHhc--CcceEEEEEc---cCCchHHHHHHcCC--CCccEE
Q 024784 128 AALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVE-QQYK--DRVNFVMLNV---DNTKWEQELDEFGV--EGIPHF 199 (262)
Q Consensus 128 ~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~-~~~~--~~v~~v~V~v---D~~~~~~l~~~~gi--~~~Pt~ 199 (262)
++.+++..+.+-+.+||.|=..+ |+= +-...+.+++ +... +.+-+..|-+ .+..+.+++++|+| ..+|.+
T Consensus 10 D~~tFdKvi~kf~~~LVKFD~ay-PyG-eKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~ 87 (126)
T PF07912_consen 10 DELTFDKVIPKFKYVLVKFDVAY-PYG-EKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVI 87 (126)
T ss_dssp STTHHHHHGGGSSEEEEEEEESS---C-HHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEE
T ss_pred cceehhheeccCceEEEEEeccC-CCc-chHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEE
Confidence 55678888888999999996442 332 2334566666 3332 2245555543 35567899999999 569999
Q ss_pred EEEcCCCeEEEEE--eCCCCHHHHHHHHHHH
Q 024784 200 AFLDREGNEEGNV--VGRLPRQYLLENVDAL 228 (262)
Q Consensus 200 vliD~~Gkiv~~~--~G~~~~e~l~~~l~~l 228 (262)
+++-.+.+..-.+ .|..+.+.|+.|+...
T Consensus 88 ~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 88 YLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp EEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred EEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 9995455544455 7888999999998764
No 216
>PTZ00062 glutaredoxin; Provisional
Probab=95.41 E-value=0.058 Score=46.33 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=40.6
Q ss_pred CCCcEEEEEEc----CCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCch--HHHHHHcCCCCccEEEEEcCCCeEE
Q 024784 138 NGKPTVLEFYA----DWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKW--EQELDEFGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 138 ~~k~vlV~F~a----~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~--~~l~~~~gi~~~Pt~vliD~~Gkiv 209 (262)
+.++|+|+-.+ +||++|++....|.+. + +.+..+|++.+.. +.+.+..|...+|.+++ +|+.+
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~----~--i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI---~G~~I 179 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNSS----G--VKYETYNIFEDPDLREELKVYSNWPTYPQLYV---NGELI 179 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHHc----C--CCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE---CCEEE
Confidence 45667776553 7999999988777653 2 5666777775431 23334446778888865 56654
No 217
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=95.30 E-value=0.095 Score=49.69 Aligned_cols=86 Identities=13% Similarity=0.104 Sum_probs=51.9
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCch-HHHHHH---------cCCCCccEEEEEcCCCeEEEEE
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKW-EQELDE---------FGVEGIPHFAFLDREGNEEGNV 212 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~-~~l~~~---------~gi~~~Pt~vliD~~Gkiv~~~ 212 (262)
|+.|..+|||+|.+....|.+. + +.+..+|+|.... .++.++ .|...+|++++ +|+. +
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~----g--i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi---~~~~---i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN----D--IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV---GDVH---I 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC----C--CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE---CCEE---E
Confidence 6678899999999988777763 2 6677788875431 122222 47788999965 4543 3
Q ss_pred eCCCCHHHHHHHHHHHhCCCCCCCcccc
Q 024784 213 VGRLPRQYLLENVDALAHGKASIPHARI 240 (262)
Q Consensus 213 ~G~~~~e~l~~~l~~l~~~~~~~~~~~~ 240 (262)
.|..+...-...|..+++|-+-......
T Consensus 72 gGf~~l~~~~g~l~~~~~~~~~~~~~~~ 99 (410)
T PRK12759 72 GGYDNLMARAGEVIARVKGSSLTTFSKT 99 (410)
T ss_pred eCchHHHHHhCCHHHHhcCCcccccccc
Confidence 3443333334455556665444444333
No 218
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=95.29 E-value=0.14 Score=45.45 Aligned_cols=107 Identities=17% Similarity=0.195 Sum_probs=71.8
Q ss_pred ccccccccccccchHHHhcCCCcEEEEEE-cCCChhhHhh--hHHHHHHHHHhcCcceEEEEEccCCch-----------
Q 024784 119 GVSLKDLSAAALPYEQALTNGKPTVLEFY-ADWCEVCREL--APDVYRVEQQYKDRVNFVMLNVDNTKW----------- 184 (262)
Q Consensus 119 ~~~l~~~~g~~~~l~~~~~~~k~vlV~F~-a~wC~~C~~~--~p~L~~l~~~~~~~v~~v~V~vD~~~~----------- 184 (262)
.+....+.++..++.+.+ .||+.||-++ ..|=..|... .|.+.++.+.-.+.++++.||+.+.-.
T Consensus 103 ~l~g~tL~g~~~~~~~~l-~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~~~~~~~ 181 (252)
T PF05176_consen 103 NLQGKTLAGNKVDTTDLL-RGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENWLKSWLVKLFMGS 181 (252)
T ss_pred CCccccCCCCCccccccc-CCceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhhh
Confidence 466777788888877776 5777766555 5554444321 244444444433358899998875422
Q ss_pred ----------------------HHHHHHcCCC--CccEEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Q 024784 185 ----------------------EQELDEFGVE--GIPHFAFLDREGNEEGNVVGRLPRQYLLENVD 226 (262)
Q Consensus 185 ----------------------~~l~~~~gi~--~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~ 226 (262)
..+-+.+++. -+..++++|.+|+|.+.-.|..++++++...+
T Consensus 182 lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 182 LRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELESLWK 247 (252)
T ss_pred hhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHHHHH
Confidence 2333455554 47789999999999999999999998877654
No 219
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.15 Score=42.50 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=69.0
Q ss_pred cCCCcEEEEEE-cCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCC--------------------------chHHHH
Q 024784 137 TNGKPTVLEFY-ADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNT--------------------------KWEQEL 188 (262)
Q Consensus 137 ~~~k~vlV~F~-a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~--------------------------~~~~l~ 188 (262)
+.||.++++|| .++--.|-.+.-.+.+.++++.+. .+++++++|.. .+.+++
T Consensus 31 y~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Is 110 (196)
T KOG0852|consen 31 YKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEIS 110 (196)
T ss_pred hcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhH
Confidence 47899999999 777777877777777777777765 78999999843 125888
Q ss_pred HHcCCC------CccEEEEEcCCCeEEEEEe----CCCCHHHHHHHHHHHh
Q 024784 189 DEFGVE------GIPHFAFLDREGNEEGNVV----GRLPRQYLLENVDALA 229 (262)
Q Consensus 189 ~~~gi~------~~Pt~vliD~~Gkiv~~~~----G~~~~e~l~~~l~~l~ 229 (262)
++||+- .+-.++++|++|.+.+... -..+.++....++...
T Consensus 111 rdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAfQ 161 (196)
T KOG0852|consen 111 RDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAFQ 161 (196)
T ss_pred HhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHHh
Confidence 999883 3557889999998876322 2356777777777654
No 220
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=94.34 E-value=0.055 Score=41.00 Aligned_cols=78 Identities=10% Similarity=0.104 Sum_probs=46.3
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccC--CchHHHHHHcCCCCccEEEEEcCCCeEEEEE----eCCCC
Q 024784 144 LEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDN--TKWEQELDEFGVEGIPHFAFLDREGNEEGNV----VGRLP 217 (262)
Q Consensus 144 V~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~--~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~----~G~~~ 217 (262)
..|+.++|++|++....|.+ .+ +.|..+|+.. ...+++.+-++-.+.+..-+++.+|...... ....+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~----~~--i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls 75 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE----HG--IEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELS 75 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH----cC--CCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCC
Confidence 46789999999999866665 22 4556666643 3333444444444455555666676654332 23456
Q ss_pred HHHHHHHHHH
Q 024784 218 RQYLLENVDA 227 (262)
Q Consensus 218 ~e~l~~~l~~ 227 (262)
.+++.+.|.+
T Consensus 76 ~~e~~~~l~~ 85 (105)
T cd02977 76 DEEALELMAE 85 (105)
T ss_pred HHHHHHHHHh
Confidence 6666666554
No 221
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=94.34 E-value=0.63 Score=36.28 Aligned_cols=95 Identities=9% Similarity=0.137 Sum_probs=61.9
Q ss_pred hHHHhcCCCcEEEEEE-cCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCc-----------hHHHHHHcCCC-Ccc
Q 024784 132 YEQALTNGKPTVLEFY-ADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTK-----------WEQELDEFGVE-GIP 197 (262)
Q Consensus 132 l~~~~~~~k~vlV~F~-a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~-----------~~~l~~~~gi~-~~P 197 (262)
+++...+++++|| |- ...=+.=+.....|.+-...+..+ +.++.+ ++... ...+.+.|++. +.-
T Consensus 3 L~~~~w~~R~lvv-~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i-~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f 80 (118)
T PF13778_consen 3 LDQFRWKNRLLVV-FAPSADDPRYQQQLEELQNNRCGLDERDIVVIVI-TGDGARSPGKPLSPEDIQALRKRLRIPPGGF 80 (118)
T ss_pred hhHhcCcCceEEE-ECCCCCCHHHHHHHHHHHhhhhccccCceEEEEE-eCCccccccCcCCHHHHHHHHHHhCCCCCce
Confidence 3344344554443 33 233445566666777766667666 555555 33222 13777889875 345
Q ss_pred EEEEEcCCCeEEEEEeCCCCHHHHHHHHHHH
Q 024784 198 HFAFLDREGNEEGNVVGRLPRQYLLENVDAL 228 (262)
Q Consensus 198 t~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l 228 (262)
+++++++||.+-.++....+.++|-+.|+..
T Consensus 81 ~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 81 TVVLIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred EEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 7889999999999999999999999888753
No 222
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=94.32 E-value=0.15 Score=43.39 Aligned_cols=84 Identities=13% Similarity=0.300 Sum_probs=64.7
Q ss_pred cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCC-
Q 024784 137 TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGR- 215 (262)
Q Consensus 137 ~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~- 215 (262)
.+|-+|||..|...-+-|.-+...|+.++-.|.. +.||.+-.. .....|--...||++++ -.|.+...+.|.
T Consensus 109 s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at-----~cIpNYPe~nlPTl~VY-~~G~lk~q~igll 181 (240)
T KOG3170|consen 109 SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPAT-----TCIPNYPESNLPTLLVY-HHGALKKQMIGLL 181 (240)
T ss_pred cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEecccc-----cccCCCcccCCCeEEEe-ecchHHhheehhh
Confidence 3688999999999999999999999999999997 788777543 23345666789999999 788887766653
Q ss_pred ------CCHHHHHHHHHH
Q 024784 216 ------LPRQYLLENVDA 227 (262)
Q Consensus 216 ------~~~e~l~~~l~~ 227 (262)
.+.+++..+|-+
T Consensus 182 ~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 182 ELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred hhcCCcCCHHHHHHHHHh
Confidence 245666665544
No 223
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=94.01 E-value=0.41 Score=42.32 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=43.0
Q ss_pred HhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcC
Q 024784 135 ALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDR 204 (262)
Q Consensus 135 ~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~ 204 (262)
+..+||+.+++..+.|||+|..+.=-|.....+|+. +.+....-|..+ .-..+||++|.+-
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn-~~l~~~~S~~~d--------~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN-FSLEYHYSDPYD--------NYPNTPTLIFNNY 114 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCC-eeeEEeecCccc--------CCCCCCeEEEecC
Confidence 346899999999999999999988777777888876 333333333211 1235888888755
No 224
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=93.99 E-value=1.3 Score=35.70 Aligned_cols=83 Identities=17% Similarity=0.309 Sum_probs=53.6
Q ss_pred EEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCC---CccEEEEEcCCCeEEEEEeCCCCH
Q 024784 142 TVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVE---GIPHFAFLDREGNEEGNVVGRLPR 218 (262)
Q Consensus 142 vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~---~~Pt~vliD~~Gkiv~~~~G~~~~ 218 (262)
-++.|+.+.|+=|.+....++. ++ +.+-.+..|+-. .+-++|||. .-=.+.+| +|+. +.|..+.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~-----~G-f~Vk~~~~~d~~--alK~~~gIp~e~~SCHT~VI--~Gy~---vEGHVPa 93 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKA-----NG-FEVKVVETDDFL--ALKRRLGIPYEMQSCHTAVI--NGYY---VEGHVPA 93 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHh-----CC-cEEEEeecCcHH--HHHHhcCCChhhccccEEEE--cCEE---EeccCCH
Confidence 4777899999999987655541 12 666666666543 777778874 11245666 6765 4588899
Q ss_pred HHHHHHHHHHhCCC-CCCCc
Q 024784 219 QYLLENVDALAHGK-ASIPH 237 (262)
Q Consensus 219 e~l~~~l~~l~~~~-~~~~~ 237 (262)
+.+..+++.--+.+ -++||
T Consensus 94 ~aI~~ll~~~pd~~GlavPg 113 (149)
T COG3019 94 EAIARLLAEKPDAKGLAVPG 113 (149)
T ss_pred HHHHHHHhCCCCcceecCCC
Confidence 87777766554222 34555
No 225
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=93.67 E-value=0.72 Score=37.91 Aligned_cols=93 Identities=16% Similarity=0.226 Sum_probs=58.5
Q ss_pred cCCCcEEEEEEcCCChhhHhhhHHHHHHHHH-hcCc-ceEEE-EEccCCch--HHH------------------------
Q 024784 137 TNGKPTVLEFYADWCEVCRELAPDVYRVEQQ-YKDR-VNFVM-LNVDNTKW--EQE------------------------ 187 (262)
Q Consensus 137 ~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~-~~~~-v~~v~-V~vD~~~~--~~l------------------------ 187 (262)
..||+-+|...|-.-..=..-.|.+..+.+. ++.. ++... ||.|..-+ .-+
T Consensus 35 l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~ 114 (160)
T PF09695_consen 35 LPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGV 114 (160)
T ss_pred cCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecccccccchHHHHHHHHHhhhhCCCcEEEEcCCCc
Confidence 4688877766655444444445666666555 5443 44443 46664321 011
Q ss_pred -HHHcCCC-CccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHh
Q 024784 188 -LDEFGVE-GIPHFAFLDREGNEEGNVVGRLPRQYLLENVDALA 229 (262)
Q Consensus 188 -~~~~gi~-~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~ 229 (262)
.+.|+.. .--.++++|++|++++...|.++++++.+.|+-+.
T Consensus 115 ~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 115 VRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIALLK 158 (160)
T ss_pred eeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHHHHh
Confidence 1223332 22478899999999999999999999999887654
No 226
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=93.66 E-value=0.59 Score=38.15 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCC-CCHHHHHHHHHHHhC
Q 024784 157 LAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGR-LPRQYLLENVDALAH 230 (262)
Q Consensus 157 ~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~-~~~e~l~~~l~~l~~ 230 (262)
+...+.++++.+.+.+.|+.+. ..++++.+++.. |+++++.+.++....+.|. .+.+.|.+||+...-
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~-----~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~ 76 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF-----NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF 76 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE------HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCcCCcEEEEEc-----HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc
Confidence 4456778899998777777776 237999999998 9999995434444567776 799999999988643
No 227
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=93.44 E-value=0.14 Score=44.04 Aligned_cols=94 Identities=20% Similarity=0.401 Sum_probs=74.8
Q ss_pred CcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCC---C
Q 024784 140 KPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGR---L 216 (262)
Q Consensus 140 k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~---~ 216 (262)
-.++|..|-+.-+-|-.+...+.=++.+|.. +.|+.+..... ....+|...++|+++|+ ++|++++.++.. .
T Consensus 160 ~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss~~---gas~~F~~n~lP~LliY-kgGeLIgNFv~va~ql 234 (273)
T KOG3171|consen 160 TTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSSNT---GASDRFSLNVLPTLLIY-KGGELIGNFVSVAEQL 234 (273)
T ss_pred EEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeeccc---cchhhhcccCCceEEEe-eCCchhHHHHHHHHHH
Confidence 3567889999999999999999999999987 78888876655 47789999999999999 999999876532 3
Q ss_pred CHHHHHHHHHHHhCCCCCCCcc
Q 024784 217 PRQYLLENVDALAHGKASIPHA 238 (262)
Q Consensus 217 ~~e~l~~~l~~l~~~~~~~~~~ 238 (262)
..+.+-..|++.+++-+-+|..
T Consensus 235 gedffa~dle~FL~e~gllpe~ 256 (273)
T KOG3171|consen 235 GEDFFAGDLESFLNEYGLLPER 256 (273)
T ss_pred hhhhhhhhHHHHHHHcCCCccc
Confidence 3566666777777777666653
No 228
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=0.65 Score=37.87 Aligned_cols=90 Identities=14% Similarity=0.172 Sum_probs=64.7
Q ss_pred ccccccccccccchHHHhcCCCcEEEEEE-cCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc--------------
Q 024784 119 GVSLKDLSAAALPYEQALTNGKPTVLEFY-ADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK-------------- 183 (262)
Q Consensus 119 ~~~l~~~~g~~~~l~~~~~~~k~vlV~F~-a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~-------------- 183 (262)
.|++...+.+.+.+.+ ..||..+|..+ +=.-+.|-.....+++.+..+.+ ..++.|+.|-.=
T Consensus 26 ~ftl~~~dL~~v~l~~--~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~-~~Vl~IS~DLPFAq~RfC~aeGi~nv 102 (158)
T COG2077 26 DFTLVGKDLNDVSLAD--FAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN-TVVLCISMDLPFAQKRFCGAEGIENV 102 (158)
T ss_pred ceEEEcCcccceeccc--cCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC-cEEEEEeCCChhHHhhhhhhcCcccc
Confidence 3666666666666654 35776666666 77789999999999999998887 788888888420
Q ss_pred -------hHHHHHHcCC--CCcc-------EEEEEcCCCeEEEE
Q 024784 184 -------WEQELDEFGV--EGIP-------HFAFLDREGNEEGN 211 (262)
Q Consensus 184 -------~~~l~~~~gi--~~~P-------t~vliD~~Gkiv~~ 211 (262)
..++-++||+ ...| ..+++|.+|++++.
T Consensus 103 ~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~ 146 (158)
T COG2077 103 ITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYS 146 (158)
T ss_pred eEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEE
Confidence 1244567775 3444 67889999999886
No 229
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=92.95 E-value=0.98 Score=34.41 Aligned_cols=94 Identities=10% Similarity=0.105 Sum_probs=68.3
Q ss_pred hHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCC----CccEEEEEcCCCe
Q 024784 132 YEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVE----GIPHFAFLDREGN 207 (262)
Q Consensus 132 l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~----~~Pt~vliD~~Gk 207 (262)
+..++.-.+.|+|.|..+- ..-...+..+.++++..++.-.+..||+.+.+...+|+++.|. --|..+.--+||.
T Consensus 12 fKKLLRTr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKdG~ 90 (112)
T cd03067 12 FKKLLRTRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKDGD 90 (112)
T ss_pred HHHHHhhcCcEEEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccCCC
Confidence 4445555666777666543 3334455578889999999999999999988788999999998 5565554348998
Q ss_pred EEEEEeCCCCHHHHHHHHH
Q 024784 208 EEGNVVGRLPRQYLLENVD 226 (262)
Q Consensus 208 iv~~~~G~~~~e~l~~~l~ 226 (262)
.-..|....+...+..+|+
T Consensus 91 fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 91 FHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred ccccccchhhHHHHHHHhh
Confidence 7777777677777766664
No 230
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=92.87 E-value=0.91 Score=31.38 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=38.0
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEE
Q 024784 144 LEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 144 V~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv 209 (262)
+.|+..||++|++..-.|.+. +-.+.++.++..... .++.+......+|++.. .+|..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~----gl~~e~~~v~~~~~~-~~~~~~np~~~vP~L~~--~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA----GITVELREVELKNKP-AEMLAASPKGTVPVLVL--GNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc----CCCcEEEEeCCCCCC-HHHHHHCCCCCCCEEEE--CCCcEE
Confidence 356789999999887555543 222566666654332 46666667778999854 456654
No 231
>PHA03075 glutaredoxin-like protein; Provisional
Probab=92.59 E-value=1.4 Score=34.29 Aligned_cols=85 Identities=20% Similarity=0.295 Sum_probs=52.1
Q ss_pred CcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEcc-----C------------CchHHHHHHcCCCCccEEEEE
Q 024784 140 KPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVD-----N------------TKWEQELDEFGVEGIPHFAFL 202 (262)
Q Consensus 140 k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD-----~------------~~~~~l~~~~gi~~~Pt~vli 202 (262)
|.++|.|.-+.|+.|.-....|.++.++|. ++.||+= + .=...+.+.+|.. +=.++-+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~----ilrVNIlSfFsK~g~v~~lg~d~~y~lInn~~~~lgne-~v~lfKy 76 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD----ILRVNILSFFSKDGQVKVLGMDKGYTLINNFFKHLGNE-YVSLFKY 76 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc----EEEEEeeeeeccCCceEEEecccceehHHHHHHhhccc-EEEEEEE
Confidence 568999999999999998888877666654 5555431 1 1113566777744 4466667
Q ss_pred cCC-CeEEEE------EeC-----CCCHHHHHHHHHHHh
Q 024784 203 DRE-GNEEGN------VVG-----RLPRQYLLENVDALA 229 (262)
Q Consensus 203 D~~-Gkiv~~------~~G-----~~~~e~l~~~l~~l~ 229 (262)
|++ |++-+. ..+ .++.++|++.|++.-
T Consensus 77 dp~t~qmA~V~i~k~~~la~id~~~v~~d~L~~~Ie~a~ 115 (123)
T PHA03075 77 DPETKQMAFVDISKFLVLAQIDKSFVDLDQLKEEIEKAP 115 (123)
T ss_pred cCCCCcEEEEehhHeeeeeecchhhcCHHHHHHHHHhCC
Confidence 755 544321 112 244566666666543
No 232
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=92.33 E-value=0.47 Score=38.61 Aligned_cols=58 Identities=17% Similarity=0.262 Sum_probs=37.7
Q ss_pred EEEEcC------CChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc--hHHHHHHcCC----CCccEEEEEcCCCeEEE
Q 024784 144 LEFYAD------WCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK--WEQELDEFGV----EGIPHFAFLDREGNEEG 210 (262)
Q Consensus 144 V~F~a~------wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~--~~~l~~~~gi----~~~Pt~vliD~~Gkiv~ 210 (262)
|.|.++ ||++|......|+++ . +.|..+|++.+. .+++.+.++. ..+|.+++ +|+.++
T Consensus 3 vlYttsl~giR~t~~~C~~ak~iL~~~----~--V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI---~G~~IG 72 (147)
T cd03031 3 VLYTTSLRGVRKTFEDCNNVRAILESF----R--VKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV---DGRYLG 72 (147)
T ss_pred EEEEcCCcCCCCcChhHHHHHHHHHHC----C--CcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE---CCEEEe
Confidence 445566 899999888777653 2 667778887543 2355555565 57888765 565443
No 233
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=92.26 E-value=0.14 Score=39.44 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=38.8
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCC--chHHHHHHcCCCCccEEEEEcCCCeEE
Q 024784 144 LEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNT--KWEQELDEFGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 144 V~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~--~~~~l~~~~gi~~~Pt~vliD~~Gkiv 209 (262)
..|+.++|+.|++....|.+ .+ +.|..+|+..+ ..+++.+-++..+.|..-++++.|+..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~----~~--i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~ 63 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE----HG--VDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSY 63 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH----cC--CceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchH
Confidence 45779999999999877766 22 55666666543 334444444555567677777777644
No 234
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=92.16 E-value=2.1 Score=29.84 Aligned_cols=73 Identities=7% Similarity=0.145 Sum_probs=42.0
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcC-CCeEEEEEeCCCCHHHHH
Q 024784 144 LEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDR-EGNEEGNVVGRLPRQYLL 222 (262)
Q Consensus 144 V~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~-~Gkiv~~~~G~~~~e~l~ 222 (262)
..|+.++|++|++..-.|... + +.+-.++++.....++ +.-+...+|+++.-|. +|+.+. ....+.
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~~----g--i~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~------eS~~I~ 69 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDYH----G--IPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLV------DSSVII 69 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHHC----C--CceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEE------cHHHHH
Confidence 456778999999988555542 2 3333445554322233 4456678999865322 354432 345566
Q ss_pred HHHHHHh
Q 024784 223 ENVDALA 229 (262)
Q Consensus 223 ~~l~~l~ 229 (262)
++|++.+
T Consensus 70 ~yL~~~~ 76 (77)
T cd03040 70 STLKTYL 76 (77)
T ss_pred HHHHHHc
Confidence 6766654
No 235
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=0.46 Score=34.12 Aligned_cols=59 Identities=19% Similarity=0.337 Sum_probs=38.7
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCC--ch------------HHHHHHcCCCCccEEEEEcCCCeEE
Q 024784 144 LEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNT--KW------------EQELDEFGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 144 V~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~--~~------------~~l~~~~gi~~~Pt~vliD~~Gkiv 209 (262)
+.|++..||.|.....+|.++. +++-.|++... +. -+..+.+|--|+|.+++ .||++|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~--~d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT--DDGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe--CCCcEE
Confidence 5799999999998877776643 23333343321 11 13346678889999877 678876
Q ss_pred E
Q 024784 210 G 210 (262)
Q Consensus 210 ~ 210 (262)
.
T Consensus 77 l 77 (85)
T COG4545 77 L 77 (85)
T ss_pred E
Confidence 5
No 236
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.34 E-value=0.61 Score=40.57 Aligned_cols=44 Identities=32% Similarity=0.586 Sum_probs=36.9
Q ss_pred HHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHhCCCCC
Q 024784 186 QELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVDALAHGKAS 234 (262)
Q Consensus 186 ~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~~~~~~ 234 (262)
..+.++||+++||++| +|++ .+.|..+++.|...|+++++.+..
T Consensus 175 ~~A~e~gI~gVP~fv~---d~~~--~V~Gaq~~~v~~~al~~~~~~~~~ 218 (225)
T COG2761 175 AAAQEMGIRGVPTFVF---DGKY--AVSGAQPYDVLEDALRQLLAEKAE 218 (225)
T ss_pred HHHHHCCCccCceEEE---cCcE--eecCCCCHHHHHHHHHHHHhcccc
Confidence 5567899999999998 4444 577999999999999999987744
No 237
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.31 E-value=1.1 Score=40.72 Aligned_cols=91 Identities=16% Similarity=0.396 Sum_probs=63.1
Q ss_pred CCcEEEEEEcC----CChhhHhhhHHHHHHHHHhcC--------cceEEEEEccCCchHHHHHHcCCCCccEEEEEc-CC
Q 024784 139 GKPTVLEFYAD----WCEVCRELAPDVYRVEQQYKD--------RVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLD-RE 205 (262)
Q Consensus 139 ~k~vlV~F~a~----wC~~C~~~~p~L~~l~~~~~~--------~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD-~~ 205 (262)
+-.++|+|.|. .|.-|..+..+++-+++.+.. ++=|..||.|+.+ ++.+.+++..+|+++++. +.
T Consensus 60 Nys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p--~~Fq~l~ln~~P~l~~f~P~~ 137 (331)
T KOG2603|consen 60 NYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP--QVFQQLNLNNVPHLVLFSPAK 137 (331)
T ss_pred CeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH--HHHHHhcccCCCeEEEeCCCc
Confidence 44567788764 599999999888887765431 2456677777654 999999999999999994 34
Q ss_pred CeEEEE------EeCCCCHHHHHHHHHHHhCCC
Q 024784 206 GNEEGN------VVGRLPRQYLLENVDALAHGK 232 (262)
Q Consensus 206 Gkiv~~------~~G~~~~e~l~~~l~~l~~~~ 232 (262)
|+.... -.| ...|.+.++++..-+-.
T Consensus 138 ~n~~~s~~~d~~~~g-~~Ae~iaqfv~~~tkv~ 169 (331)
T KOG2603|consen 138 GNKKRSDQMDQQDLG-FEAEQIAQFVADRTKVN 169 (331)
T ss_pred cccccCccchhhhcc-hhHHHHHHHHHHhhhhe
Confidence 555421 112 22677777777765443
No 238
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=91.14 E-value=2.1 Score=30.10 Aligned_cols=71 Identities=8% Similarity=0.101 Sum_probs=39.3
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc--hHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHH
Q 024784 144 LEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK--WEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYL 221 (262)
Q Consensus 144 V~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~--~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l 221 (262)
..++.++|++|.+..-.|.+. + +.+-.++++... ..++.+..+...+|+++. +.+|..+. ....+
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~----g--i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~~l~------es~~I 69 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL----E--LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTGVQMF------ESADI 69 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc----C--CcEEEEECCCChHHHHHHHHhCCCCcccEEEe-CCCCeEEE------cHHHH
Confidence 346678999999887666553 2 233334444322 235555556678998743 22353322 34556
Q ss_pred HHHHHH
Q 024784 222 LENVDA 227 (262)
Q Consensus 222 ~~~l~~ 227 (262)
.++|++
T Consensus 70 ~~yL~~ 75 (77)
T cd03041 70 VKYLFK 75 (77)
T ss_pred HHHHHH
Confidence 666554
No 239
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=91.03 E-value=0.37 Score=37.32 Aligned_cols=75 Identities=12% Similarity=0.144 Sum_probs=44.9
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc--hH---HHHHHcCCCCccEEEEEcCCCeEEEEEe-----
Q 024784 144 LEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK--WE---QELDEFGVEGIPHFAFLDREGNEEGNVV----- 213 (262)
Q Consensus 144 V~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~--~~---~l~~~~gi~~~Pt~vliD~~Gkiv~~~~----- 213 (262)
..|+.++|+.|++....|.+ .+ +.+..+|+.... .+ ++++..| ...--+++++|+......
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~----~~--i~~~~idi~~~~~~~~el~~l~~~~~---~~~~~lin~~~~~~k~l~~~~~~ 72 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA----NG--IEYQFIDIGEDGPTREELLDILSLLE---DGIDPLLNTRGQSYRALNTSNTF 72 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH----cC--CceEEEecCCChhhHHHHHHHHHHcC---CCHHHheeCCCcchhhCCchhhc
Confidence 35789999999999877776 22 567777776432 22 3344444 223336667877654422
Q ss_pred CCCCHHHHHHHHHH
Q 024784 214 GRLPRQYLLENVDA 227 (262)
Q Consensus 214 G~~~~e~l~~~l~~ 227 (262)
...+.+++.+.|.+
T Consensus 73 ~~ls~~e~~~~i~~ 86 (117)
T TIGR01617 73 LDLSDKEALELLAE 86 (117)
T ss_pred ccCCHHHHHHHHHh
Confidence 23555666655554
No 240
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=90.88 E-value=2.9 Score=31.50 Aligned_cols=84 Identities=15% Similarity=0.334 Sum_probs=55.4
Q ss_pred hHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcC-------
Q 024784 132 YEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDR------- 204 (262)
Q Consensus 132 l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~------- 204 (262)
++..+..++.++|-|+..-=. .+...+.++++.+.+.+.|.... + .++++.|++ .|+++++-+
T Consensus 11 l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~-~----~~~~~~~~~--~~~ivl~~p~~~~~k~ 80 (104)
T cd03069 11 FEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS-D----KQLLEKYGY--GEGVVLFRPPRLSNKF 80 (104)
T ss_pred HHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC-h----HHHHHhcCC--CCceEEEechhhhccc
Confidence 445556777888877755333 45567778888886656653322 2 267888998 577777722
Q ss_pred -CCeEEEEEeCCCCHHHHHHHHHH
Q 024784 205 -EGNEEGNVVGRLPRQYLLENVDA 227 (262)
Q Consensus 205 -~Gkiv~~~~G~~~~e~l~~~l~~ 227 (262)
++.. .+.|..+.+.|.+||+.
T Consensus 81 de~~~--~y~g~~~~~~l~~fi~~ 102 (104)
T cd03069 81 EDSSV--KFDGDLDSSKIKKFIRE 102 (104)
T ss_pred Ccccc--cccCcCCHHHHHHHHHh
Confidence 3333 36787888899999875
No 241
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=89.74 E-value=2.2 Score=37.34 Aligned_cols=93 Identities=15% Similarity=0.230 Sum_probs=58.8
Q ss_pred cCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcC----cceEEEEEccCCchH----HHHHHc--CCCCcc---------
Q 024784 137 TNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKD----RVNFVMLNVDNTKWE----QELDEF--GVEGIP--------- 197 (262)
Q Consensus 137 ~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~----~v~~v~V~vD~~~~~----~l~~~~--gi~~~P--------- 197 (262)
..|+++||-+--.+|.+|...+..|+.+..++.. +|.|+.||--..... ++.++. +|..|.
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~~~q~dvW 103 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQDENQPDVW 103 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCCccccCHH
Confidence 4799999999999999999988888887766543 266666664332211 111111 121111
Q ss_pred --------EEEEEcCCCeEEEEEeCC---CCHHHHHHHHHHHh
Q 024784 198 --------HFAFLDREGNEEGNVVGR---LPRQYLLENVDALA 229 (262)
Q Consensus 198 --------t~vliD~~Gkiv~~~~G~---~~~e~l~~~l~~l~ 229 (262)
-++|||+=|++++.+.-. +....+++.|+...
T Consensus 104 ~~L~G~kdD~~iyDRCGrL~~~i~~P~S~l~~~~ve~Ai~~ty 146 (238)
T PF04592_consen 104 ELLNGSKDDFLIYDRCGRLTYHIPLPYSFLQFPYVEAAIKSTY 146 (238)
T ss_pred HHhCCCcCcEEEEeccCcEEEEecCcHHHhcCHHHHHHHHHHH
Confidence 478999999999876533 23345555555543
No 242
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=89.31 E-value=5.7 Score=29.64 Aligned_cols=89 Identities=9% Similarity=0.168 Sum_probs=57.1
Q ss_pred chHHHhc-CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEE
Q 024784 131 PYEQALT-NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 131 ~l~~~~~-~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv 209 (262)
.++.++. ++..++|-|+..-=. .+...+.++++.+.+.+.|. +..+ .++.+.+++. .|.++++.+.....
T Consensus 10 ~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~-~~~~----~~~~~~~~~~-~~~i~l~~~~~e~~ 80 (102)
T cd03066 10 ELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFF-ATFD----SKVAKKLGLK-MNEVDFYEPFMEEP 80 (102)
T ss_pred HHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEE-EECc----HHHHHHcCCC-CCcEEEeCCCCCCC
Confidence 3556666 677777777755333 34556778888886656663 2222 2567888876 68888883312222
Q ss_pred EEE-eCCCCHHHHHHHHHHH
Q 024784 210 GNV-VGRLPRQYLLENVDAL 228 (262)
Q Consensus 210 ~~~-~G~~~~e~l~~~l~~l 228 (262)
..+ .|..+.+.|.+||+..
T Consensus 81 ~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 81 VTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred cccCCCCCCHHHHHHHHHHh
Confidence 335 6778999999998754
No 243
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=88.77 E-value=1.4 Score=30.09 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=36.8
Q ss_pred EEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccC--CchHHHHHHcCCCCccEEEEEcCCCeE
Q 024784 145 EFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDN--TKWEQELDEFGVEGIPHFAFLDREGNE 208 (262)
Q Consensus 145 ~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~--~~~~~l~~~~gi~~~Pt~vliD~~Gki 208 (262)
.|+.++|++|++..-.|... +-.+..+.++... ....++.+......+|++.+ .+|..
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~----~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~~ 62 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEK----GIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL--DDGTV 62 (74)
T ss_pred EEeCCCCcchHHHHHHHHHc----CCCceEEEeecccCccCCHHHHhhCCCCCCCEEEe--CCCCE
Confidence 46788999999988666654 2124556666532 22345666667778999865 35554
No 244
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=88.14 E-value=2 Score=28.29 Aligned_cols=53 Identities=9% Similarity=0.003 Sum_probs=34.0
Q ss_pred EEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEE
Q 024784 145 EFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAF 201 (262)
Q Consensus 145 ~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vl 201 (262)
.|+.++|+.|.+..-.+... +-.+.++.++.+.....++.+..+-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK----GLPYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc----CCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 56788999999877666554 222555666655443234556667778997754
No 245
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=87.57 E-value=0.54 Score=36.28 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=44.4
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCC--chHHHHHHcCCCCccEEEEEcCCCeEEEEEe---CCCC
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNT--KWEQELDEFGVEGIPHFAFLDREGNEEGNVV---GRLP 217 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~--~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~---G~~~ 217 (262)
+..|+.++|+.|++....|.+ .+ +.+..+|+... ..+++.+-+...+.+.--+++++|....... ...+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~----~g--i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~~~~ls 75 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE----HQ--IPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDIDELS 75 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH----CC--CceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCCcccCC
Confidence 345778999999998877666 22 55666666543 2233333333333444556677776554321 1245
Q ss_pred HHHHHHHHHH
Q 024784 218 RQYLLENVDA 227 (262)
Q Consensus 218 ~e~l~~~l~~ 227 (262)
.+++.+.|.+
T Consensus 76 ~~e~i~~l~~ 85 (115)
T cd03032 76 LSELIRLISE 85 (115)
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 246
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=87.22 E-value=2.7 Score=33.44 Aligned_cols=47 Identities=21% Similarity=0.420 Sum_probs=33.2
Q ss_pred EEEEccCCchHHHHHHcCCCCccEEEEEcCCCe-----------EEEEEeCCCCHHHHHHHHH
Q 024784 175 VMLNVDNTKWEQELDEFGVEGIPHFAFLDREGN-----------EEGNVVGRLPRQYLLENVD 226 (262)
Q Consensus 175 v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gk-----------iv~~~~G~~~~e~l~~~l~ 226 (262)
..+.+|. .+.++|+|+.+|++++. +++. -..+..|..+.++-.+.|.
T Consensus 55 ~~v~IdP----~lF~~f~I~~VPa~V~~-~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 55 SGVQIDP----QWFKQFDITAVPAFVVV-KDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred CcEEECh----HHHhhcCceEcCEEEEE-CCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 5566664 69999999999999999 4442 2456778887555444444
No 247
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=86.13 E-value=12 Score=27.84 Aligned_cols=72 Identities=14% Similarity=0.239 Sum_probs=41.1
Q ss_pred CChhhHhh------hHHHHH-HHHHhcCc-ceEEEEEccCCchH----HHHHHcC--CCCccEEEEEcCCCeEEEEEeCC
Q 024784 150 WCEVCREL------APDVYR-VEQQYKDR-VNFVMLNVDNTKWE----QELDEFG--VEGIPHFAFLDREGNEEGNVVGR 215 (262)
Q Consensus 150 wC~~C~~~------~p~L~~-l~~~~~~~-v~~v~V~vD~~~~~----~l~~~~g--i~~~Pt~vliD~~Gkiv~~~~G~ 215 (262)
=|+.|..+ ...|+. +.++|.+. +.+..||+...... +++++.. -.-+|-+++ +|++|+. |.
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i---~~eiV~E--Gn 82 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI---NDEIVAE--GN 82 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE---TTEEEEE--SS
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE---CCEEEec--CC
Confidence 38888653 344443 56778887 99999999876533 4444432 235887655 8888764 66
Q ss_pred CCHHHHHHHHH
Q 024784 216 LPRQYLLENVD 226 (262)
Q Consensus 216 ~~~e~l~~~l~ 226 (262)
.....+.+.|+
T Consensus 83 p~LK~I~~~~e 93 (93)
T PF07315_consen 83 PQLKDIYEEME 93 (93)
T ss_dssp --HHHHHHHHH
T ss_pred ccHHHHHHhhC
Confidence 67666666653
No 248
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=85.38 E-value=6.2 Score=30.46 Aligned_cols=63 Identities=13% Similarity=0.328 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcC-----------CCeEEEEEeCCCCHHHHH
Q 024784 156 ELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDR-----------EGNEEGNVVGRLPRQYLL 222 (262)
Q Consensus 156 ~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~-----------~Gkiv~~~~G~~~~e~l~ 222 (262)
.+.+.+..+.+-..+.-....+.+|. .+.++|+|+.+|++++... .........|..+.+.-.
T Consensus 36 ~~~~t~~~~~~l~~~~~~~~~v~IdP----~~F~~y~I~~VPa~V~~~~~~~~~~~~~~~~~~~~~~~~Gdvsl~~aL 109 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPCPGVQIDP----RLFRQYNITAVPAFVVVKDRVCVCLSCGCCSPEDYDVVYGDVSLDYAL 109 (113)
T ss_pred CHHHHHHHHHHHhhccCCCcceeECh----hHHhhCCceEcCEEEEEcCcccccccCCcCCCCcceEEEccccHHHHH
Confidence 44444444444333321225666664 6899999999999999843 013344566666654433
No 249
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=85.33 E-value=12 Score=27.82 Aligned_cols=75 Identities=17% Similarity=0.121 Sum_probs=47.3
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEE-EEEeCCC
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEE-GNVVGRL 216 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv-~~~~G~~ 216 (262)
++.+.++.|.... .+|.++...+.+++.--. ++.+...+.+. ..|++.+.+. |+.. -++.|..
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd-kI~~~~~~~~~-------------~~P~~~i~~~-~~~~gIrF~GiP 81 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSD-KITLEEDNDDE-------------RKPSFSINRP-GEDTGIRFAGIP 81 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC-ceEEEEecCCC-------------CCCEEEEecC-CCcccEEEEecC
Confidence 3444555565555 899998888888776554 35554333221 3799999844 3322 3577777
Q ss_pred CHHHHHHHHHHH
Q 024784 217 PRQYLLENVDAL 228 (262)
Q Consensus 217 ~~e~l~~~l~~l 228 (262)
.-.++..+|..+
T Consensus 82 ~GhEf~Slilai 93 (94)
T cd02974 82 MGHEFTSLVLAL 93 (94)
T ss_pred CchhHHHHHHHh
Confidence 777888887665
No 250
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=85.30 E-value=3.4 Score=30.57 Aligned_cols=73 Identities=10% Similarity=0.033 Sum_probs=54.9
Q ss_pred cEEEEEEcCCChhhHhhhHHHHHHHHHhc-CcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCC
Q 024784 141 PTVLEFYADWCEVCRELAPDVYRVEQQYK-DRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLP 217 (262)
Q Consensus 141 ~vlV~F~a~wC~~C~~~~p~L~~l~~~~~-~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~ 217 (262)
.++=.|.+..-+-.+.....+.++.+++- +.+.+-.||+...+ ++++.++|-.+||++-..+ ..+.++.|..+
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP--~lAE~~~IvATPtLIK~~P--~P~rriiGdls 77 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNP--QLAEEDKILATPTLSKILP--PPVRKIIGDLS 77 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCH--hHHhHCCEEEecHHhhcCC--CCcceeecccc
Confidence 44555668888889999999999877654 44777778888776 9999999999999876633 34456677655
No 251
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=85.21 E-value=3 Score=29.71 Aligned_cols=59 Identities=10% Similarity=0.088 Sum_probs=46.3
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcC-cceEEEEEccCCchHHHHHHcCCCCccEEEEEc
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKD-RVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLD 203 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~-~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD 203 (262)
+..|-+..-+-.+.....+.++.+++.+ .+.+-.||+.... ++++.++|-.+||++-..
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P--~lAe~~~ivAtPtLvk~~ 63 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQP--QLAEEDKIVATPTLVKVL 63 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCH--hHHhhCCEEEechhhhcC
Confidence 4444455558888888899998877744 4888888998876 999999999999987653
No 252
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=85.17 E-value=1.7 Score=40.06 Aligned_cols=63 Identities=13% Similarity=0.264 Sum_probs=52.3
Q ss_pred ceEEEEEccCCchHHHHHHcCCCCccEEEEEcCC-CeEEEEEeCCCCHHHHHHHHHHHhCCCCC
Q 024784 172 VNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDRE-GNEEGNVVGRLPRQYLLENVDALAHGKAS 234 (262)
Q Consensus 172 v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~-Gkiv~~~~G~~~~e~l~~~l~~l~~~~~~ 234 (262)
...+.|..|..+...+..-|.+..+|.+.+||+. |+.++++.|.+.+++|...+++.+.+...
T Consensus 131 ~~wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~~~~ 194 (356)
T KOG1364|consen 131 QRWLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDSCPH 194 (356)
T ss_pred ceEEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhcCCc
Confidence 4555556666666688899999999999999976 99999999999999999999998886643
No 253
>PRK09301 circadian clock protein KaiB; Provisional
Probab=85.01 E-value=3.4 Score=31.53 Aligned_cols=75 Identities=11% Similarity=0.031 Sum_probs=57.3
Q ss_pred CCcEEEEEEcCCChhhHhhhHHHHHHHHHhc-CcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCC
Q 024784 139 GKPTVLEFYADWCEVCRELAPDVYRVEQQYK-DRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLP 217 (262)
Q Consensus 139 ~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~-~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~ 217 (262)
+..++=.|.+..-+-.+.....+.++.+++- +.+.+-.||+...+ ++++.++|-.+||++-..+ ..+.++.|..+
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qP--elAE~~~IvATPTLIK~~P--~P~rriiGDls 80 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNP--QLAEEDKILATPTLAKILP--PPVRKIIGDLS 80 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCH--hHHhHCCeEEecHHhhcCC--CCcceeecccc
Confidence 4556666778888899999999999877654 44777788888776 9999999999999876533 34556777665
No 254
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=84.66 E-value=0.52 Score=37.41 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=23.2
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCC
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNT 182 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~ 182 (262)
+..|+.+||+.|++....|.+ .+ +.+..+|+..+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~----~g--i~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE----HD--IPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH----cC--CCcEEeeccCC
Confidence 446779999999998866654 22 45666666543
No 255
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=84.65 E-value=11 Score=26.16 Aligned_cols=72 Identities=10% Similarity=0.050 Sum_probs=46.2
Q ss_pred EEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHH
Q 024784 146 FYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENV 225 (262)
Q Consensus 146 F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l 225 (262)
++.++|++|++..=.+... .. .+.++.++.... ...+.+......+|++. .| |..+. +...+.++|
T Consensus 2 y~~~~Sp~~~kv~~~l~~~--~i--~~~~~~v~~~~~-~~~~~~~~p~~~vPvL~-~~--g~~l~------dS~~I~~yL 67 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEK--GI--PYELVPVDPEEK-RPEFLKLNPKGKVPVLV-DD--GEVLT------DSAAIIEYL 67 (75)
T ss_dssp EEETTSHHHHHHHHHHHHH--TE--EEEEEEEBTTST-SHHHHHHSTTSBSSEEE-ET--TEEEE------SHHHHHHHH
T ss_pred CCcCCChHHHHHHHHHHHc--CC--eEEEeccCcccc-hhHHHhhcccccceEEE-EC--CEEEe------CHHHHHHHH
Confidence 6789999999887444432 11 145555554433 35667777778899997 54 76543 556677787
Q ss_pred HHHhCC
Q 024784 226 DALAHG 231 (262)
Q Consensus 226 ~~l~~~ 231 (262)
++.-.+
T Consensus 68 ~~~~~~ 73 (75)
T PF13417_consen 68 EERYPG 73 (75)
T ss_dssp HHHSTS
T ss_pred HHHcCC
Confidence 776543
No 256
>PRK12559 transcriptional regulator Spx; Provisional
Probab=84.63 E-value=0.85 Score=36.23 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=21.7
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEcc
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVD 180 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD 180 (262)
+..|+.++|+.|++....|.+ .+ +.+..+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~----~g--i~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE----NQ--IDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH----cC--CCeEEEEee
Confidence 456789999999998766654 22 445555554
No 257
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=84.45 E-value=0.89 Score=34.63 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=35.0
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCC--c---hHHHHHHcCCCCccEEEEEcCCCeEEEE
Q 024784 144 LEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNT--K---WEQELDEFGVEGIPHFAFLDREGNEEGN 211 (262)
Q Consensus 144 V~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~--~---~~~l~~~~gi~~~Pt~vliD~~Gkiv~~ 211 (262)
..|+.+||+.|++....|.+- + +.+-.+|+..+ . ...+++++|+ --+++..|.....
T Consensus 2 ~iy~~~~C~~crka~~~L~~~----~--i~~~~~di~~~p~s~~eL~~~l~~~g~-----~~li~~~~~~yk~ 63 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR----G--VAYTFHDYRKDGLDAATLERWLAKVGW-----ETLLNKRGTTWRK 63 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc----C--CCeEEEecccCCCCHHHHHHHHHHhCh-----HHHHccCchHHHh
Confidence 468899999999988766652 2 45555555433 2 2345556552 3456667765443
No 258
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=84.29 E-value=5.4 Score=31.45 Aligned_cols=80 Identities=20% Similarity=0.211 Sum_probs=44.7
Q ss_pred cCCC--hhhHh-hhHHHH---HHHHHhcCc-ceEEEEEccCCch--------HHHHHHcCCCCccEEEEEcCCCeEEEEE
Q 024784 148 ADWC--EVCRE-LAPDVY---RVEQQYKDR-VNFVMLNVDNTKW--------EQELDEFGVEGIPHFAFLDREGNEEGNV 212 (262)
Q Consensus 148 a~wC--~~C~~-~~p~L~---~l~~~~~~~-v~~v~V~vD~~~~--------~~l~~~~gi~~~Pt~vliD~~Gkiv~~~ 212 (262)
|-.| +.|-- ..++|- ...+.++++ +.+...|+..+.. .++++.-|...+|-+++ ||+++..
T Consensus 10 amCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV---dGeiv~~- 85 (123)
T PF06953_consen 10 AMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV---DGEIVKT- 85 (123)
T ss_dssp S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE---TTEEEEE-
T ss_pred ccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE---CCEEEEe-
Confidence 4445 45632 334444 344445444 8999999886542 46667789999999876 8998764
Q ss_pred eCCCCHHHHHHHHHHHhCC
Q 024784 213 VGRLPRQYLLENVDALAHG 231 (262)
Q Consensus 213 ~G~~~~e~l~~~l~~l~~~ 231 (262)
..+.+.++|.+|+.--...
T Consensus 86 G~YPt~eEl~~~~~i~~~~ 104 (123)
T PF06953_consen 86 GRYPTNEELAEWLGISFSE 104 (123)
T ss_dssp SS---HHHHHHHHT--GGG
T ss_pred cCCCCHHHHHHHhCCCccc
Confidence 3467889999988765543
No 259
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=84.16 E-value=5.6 Score=27.19 Aligned_cols=56 Identities=11% Similarity=0.197 Sum_probs=31.4
Q ss_pred EEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeE
Q 024784 145 EFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNE 208 (262)
Q Consensus 145 ~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gki 208 (262)
.++..+|++|++..-.|... + +.+-.+.++........+..+-..+|+++. .+|..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~-----g-l~~~~~~~~~~~~~~~~~~~~~~~vP~L~~--~~~~~ 58 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK-----N-IPVEQIILQNDDEATPIRMIGAKQVPILEK--DDGSF 58 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc-----C-CCeEEEECCCCchHHHHHhcCCCccCEEEe--CCCeE
Confidence 35678999999877655543 2 233333444332233445555567898743 44543
No 260
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=83.28 E-value=0.47 Score=43.00 Aligned_cols=87 Identities=16% Similarity=0.349 Sum_probs=63.6
Q ss_pred CCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCC-chHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCC
Q 024784 139 GKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNT-KWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLP 217 (262)
Q Consensus 139 ~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~-~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~ 217 (262)
..++-+.||+.|||.-+...|.+.-....|.. +.... +++. .......+||+.+.|+.++.+.. .-.++.|..+
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~--vee~~~lpsv~s~~~~~~~ps~~~~n~t--~~~~~~~~r~ 150 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFA--VEESQALPSVFSSYGIHSEPSNLMLNQT--CPASYRGERD 150 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc-ccccc--HHHHhhcccchhccccccCCcceeeccc--cchhhccccc
Confidence 55788899999999999999988877777663 22222 3322 11366789999999999998543 3445667788
Q ss_pred HHHHHHHHHHHhC
Q 024784 218 RQYLLENVDALAH 230 (262)
Q Consensus 218 ~e~l~~~l~~l~~ 230 (262)
...+.++..++..
T Consensus 151 l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 151 LASLVNFYTEITP 163 (319)
T ss_pred HHHHHHHHHhhcc
Confidence 8888888887774
No 261
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=83.11 E-value=4.6 Score=30.59 Aligned_cols=58 Identities=17% Similarity=0.322 Sum_probs=38.9
Q ss_pred EEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCC--CccEEEEEcCCCe
Q 024784 146 FYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVE--GIPHFAFLDREGN 207 (262)
Q Consensus 146 F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~--~~Pt~vliD~~Gk 207 (262)
||-.+|+.|......+.+. +..-.+-.+++......++.+.+++. ..-+.++++.+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~----d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR----DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhc----CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 7888999999999888776 21134566666443334667788876 3555555567887
No 262
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=82.92 E-value=11 Score=36.72 Aligned_cols=84 Identities=18% Similarity=0.129 Sum_probs=57.2
Q ss_pred CCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEE-EEEeCCCC
Q 024784 139 GKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEE-GNVVGRLP 217 (262)
Q Consensus 139 ~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv-~~~~G~~~ 217 (262)
.++|-|.++.+.|.+|.++...|+++.+.-+ ++.+...+.+ ...|++.+.+ +|+.. -++.|...
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-~i~~~~~~~~-------------~~~p~~~~~~-~~~~~~i~f~g~P~ 82 (517)
T PRK15317 18 ERPIELVASLDDSEKSAELKELLEEIASLSD-KITVEEDSLD-------------VRKPSFSITR-PGEDTGVRFAGIPM 82 (517)
T ss_pred CCCEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEccCC-------------CCCCEEEEEc-CCccceEEEEecCc
Confidence 4556555666689999999988888877654 3555332211 2479998884 66543 35778788
Q ss_pred HHHHHHHHHHHhCCCCCCCc
Q 024784 218 RQYLLENVDALAHGKASIPH 237 (262)
Q Consensus 218 ~e~l~~~l~~l~~~~~~~~~ 237 (262)
-.+|..+|..++...+.-++
T Consensus 83 g~Ef~s~i~~i~~~~~~~~~ 102 (517)
T PRK15317 83 GHEFTSLVLALLQVGGHPPK 102 (517)
T ss_pred cHHHHHHHHHHHHhcCCCCC
Confidence 88999999999875533333
No 263
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=82.14 E-value=27 Score=28.72 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=30.9
Q ss_pred HcCCCC-ccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHH
Q 024784 190 EFGVEG-IPHFAFLDREGNEEGNVVGRLPRQYLLENVDAL 228 (262)
Q Consensus 190 ~~gi~~-~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l 228 (262)
.|+... --.++++|++|++.....|..+..++.+.|.-+
T Consensus 140 AWqL~e~~SaivVlDk~G~VkfvkeGaLt~aevQ~Vi~ll 179 (184)
T COG3054 140 AWQLKEESSAVVVLDKDGRVKFVKEGALTQAEVQQVIDLL 179 (184)
T ss_pred hhccccccceEEEEcCCCcEEEEecCCccHHHHHHHHHHH
Confidence 566653 346778899999999999999998888776544
No 264
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=81.78 E-value=0.84 Score=44.47 Aligned_cols=79 Identities=20% Similarity=0.363 Sum_probs=55.0
Q ss_pred cccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHH---HHHHHhcCcceEEEEEccCCc---hHHHH-----HHcCCCCc
Q 024784 128 AALPYEQALTNGKPTVLEFYADWCEVCRELAPDVY---RVEQQYKDRVNFVMLNVDNTK---WEQEL-----DEFGVEGI 196 (262)
Q Consensus 128 ~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~---~l~~~~~~~v~~v~V~vD~~~---~~~l~-----~~~gi~~~ 196 (262)
....++.+.+++||+++-..-+.|.+|..|..+=. ++.+.+.+ +|+.|.||.++ ..++. ..+|-.|+
T Consensus 101 gqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilne--nfv~ikVDREERPDVDK~YM~Fv~assg~GGW 178 (786)
T KOG2244|consen 101 GQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNE--NFVKIKVDREERPDVDKLYMAFVVASSGGGGW 178 (786)
T ss_pred hHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhh--hhhhhccChhhcCchHHHHHHHHHhccCCCCC
Confidence 34456777789999999999999999987764332 24555555 46777777543 23333 34577899
Q ss_pred cEEEEEcCCCeE
Q 024784 197 PHFAFLDREGNE 208 (262)
Q Consensus 197 Pt~vliD~~Gki 208 (262)
|..+++.++=+.
T Consensus 179 PmsV~LTPdL~P 190 (786)
T KOG2244|consen 179 PMSVFLTPDLKP 190 (786)
T ss_pred ceeEEeCCCccc
Confidence 999999887544
No 265
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=80.68 E-value=3.1 Score=34.59 Aligned_cols=37 Identities=30% Similarity=0.680 Sum_probs=28.8
Q ss_pred HHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Q 024784 185 EQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVD 226 (262)
Q Consensus 185 ~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~ 226 (262)
.+.+.++||.++||+++ +|+. .+.|..+.+.|.+.|+
T Consensus 165 ~~~a~~~gv~G~Pt~vv---~g~~--~~~G~~~~~~~~~~i~ 201 (201)
T cd03024 165 EARARQLGISGVPFFVF---NGKY--AVSGAQPPEVFLQALR 201 (201)
T ss_pred HHHHHHCCCCcCCEEEE---CCeE--eecCCCCHHHHHHHhC
Confidence 35667899999999988 5553 4679999998888763
No 266
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=80.61 E-value=23 Score=29.81 Aligned_cols=91 Identities=19% Similarity=0.327 Sum_probs=62.6
Q ss_pred CCcEEEEEE--cCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCCc----hHHHHHH---------------------
Q 024784 139 GKPTVLEFY--ADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNTK----WEQELDE--------------------- 190 (262)
Q Consensus 139 ~k~vlV~F~--a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~----~~~l~~~--------------------- 190 (262)
|.-+.|.|. ++.-|.|-.+...+.+++-++.++ +..+++++|.-+ |.+-.+.
T Consensus 31 gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~~Wi~DIks~~~~~~~~~~yPIIaD~~rel 110 (224)
T KOG0854|consen 31 GDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHKDWIKDIKSYAKVKNHSVPYPIIADPNREL 110 (224)
T ss_pred ccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHHHHHHHHHHHHhccCCCCCCCeecCCchhh
Confidence 444556565 888999999999999999999887 999999998532 1111111
Q ss_pred ---c--------CCCCcc----EEEEEcCCCeEEEEEe----CCCCHHHHHHHHHHHh
Q 024784 191 ---F--------GVEGIP----HFAFLDREGNEEGNVV----GRLPRQYLLENVDALA 229 (262)
Q Consensus 191 ---~--------gi~~~P----t~vliD~~Gkiv~~~~----G~~~~e~l~~~l~~l~ 229 (262)
| +-.+.| .++++|++.++...+. -.++.+++...|..|.
T Consensus 111 a~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGRN~dEiLRvidsLq 168 (224)
T KOG0854|consen 111 AFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGRNFDEILRVIDSLQ 168 (224)
T ss_pred hhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEcccccCcCHHHHHHHHHHHh
Confidence 1 112222 5678889988865432 2366788888888765
No 267
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=80.52 E-value=25 Score=30.06 Aligned_cols=79 Identities=19% Similarity=0.276 Sum_probs=50.6
Q ss_pred EEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc---h-------------HHHHHHcCCC--CccEEEEEcCCC
Q 024784 145 EFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK---W-------------EQELDEFGVE--GIPHFAFLDREG 206 (262)
Q Consensus 145 ~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~---~-------------~~l~~~~gi~--~~Pt~vliD~~G 206 (262)
.|.+-.|..|-.....|.++.++- ++..+...||-=+ | ...++.++.. .+|.++| ||
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~~--~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV---nG 78 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAARP--DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV---NG 78 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHHT--SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE---TT
T ss_pred EecCCCCCCCcHHHHHHHHhhcCC--CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE---CC
Confidence 355888999999999999999883 4777777777211 1 2344556554 4888866 77
Q ss_pred eEEEEEeCCCCHHHHHHHHHHHhCC
Q 024784 207 NEEGNVVGRLPRQYLLENVDALAHG 231 (262)
Q Consensus 207 kiv~~~~G~~~~e~l~~~l~~l~~~ 231 (262)
+.- .. ..+.+.+...|++....
T Consensus 79 ~~~--~~-g~~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 79 REH--RV-GSDRAAVEAAIQAARAR 100 (202)
T ss_dssp TEE--EE-TT-HHHHHHHHHHHHHT
T ss_pred eee--ee-ccCHHHHHHHHHHhhcc
Confidence 753 33 36778899999888765
No 268
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=80.20 E-value=14 Score=35.87 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=56.5
Q ss_pred CCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEE-EEEeCCCC
Q 024784 139 GKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEE-GNVVGRLP 217 (262)
Q Consensus 139 ~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv-~~~~G~~~ 217 (262)
.++|-|.++.+.|.+|.++...++++.+.-+ ++.+...+.+. ...|++.+. .+|+.. -++.|...
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-ki~~~~~~~~~------------~~~p~~~~~-~~~~~~~i~f~g~P~ 83 (515)
T TIGR03140 18 ENPVTLVLSAGSHEKSKELLELLDEIASLSD-KISLTQNTADT------------LRKPSFTIL-RDGADTGIRFAGIPG 83 (515)
T ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHhCC-CeEEEEecCCc------------CCCCeEEEe-cCCcccceEEEecCC
Confidence 4555555555579999999888888776654 46664433322 245999887 666533 35778788
Q ss_pred HHHHHHHHHHHhCCCCC
Q 024784 218 RQYLLENVDALAHGKAS 234 (262)
Q Consensus 218 ~e~l~~~l~~l~~~~~~ 234 (262)
-.+|..+|+.++.....
T Consensus 84 g~Ef~s~i~~i~~~~~~ 100 (515)
T TIGR03140 84 GHEFTSLVLAILQVGGH 100 (515)
T ss_pred cHHHHHHHHHHHHhcCC
Confidence 88999999998875533
No 269
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=78.78 E-value=3.1 Score=30.10 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCeEEEEEe-CCCCHHHHHHHHHHHh
Q 024784 195 GIPHFAFLDREGNEEGNVV-GRLPRQYLLENVDALA 229 (262)
Q Consensus 195 ~~Pt~vliD~~Gkiv~~~~-G~~~~e~l~~~l~~l~ 229 (262)
.-|+++++|.+|+++.++. ...+.+++.++|++..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 4699999999999877643 4468899999998753
No 270
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=78.26 E-value=2.2 Score=33.86 Aligned_cols=33 Identities=9% Similarity=0.255 Sum_probs=22.3
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccC
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDN 181 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~ 181 (262)
+..|+.++|+.|++....|.+ .+ +.|..+|+..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~----~~--i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA----HQ--LSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH----cC--CCeEEEECCC
Confidence 345678999999997755554 32 5566666653
No 271
>PRK04517 hypothetical protein; Provisional
Probab=77.77 E-value=12 Score=32.37 Aligned_cols=130 Identities=9% Similarity=0.033 Sum_probs=68.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH--hhccCcccccccccccccchH---------HHhcCCCcEEE-EEEcCCChhhHhhhH
Q 024784 92 NKEINRGIAVASTLAALGLFL--FTRLDFGVSLKDLSAAALPYE---------QALTNGKPTVL-EFYADWCEVCRELAP 159 (262)
Q Consensus 92 mk~~~~~l~lllll~~~~~~~--~~~~~~~~~l~~~~g~~~~l~---------~~~~~~k~vlV-~F~a~wC~~C~~~~p 159 (262)
||.|+..+.++++++....++ ......++++-.++|.....+ -.+..|..-|| .|-..+=.. ..
T Consensus 1 MK~~~~~~~~~~l~~s~~a~A~vtL~~p~~i~lL~vnG~k~~~s~~l~~~~~~l~L~~G~nQIvfry~~~~~~~---~~- 76 (216)
T PRK04517 1 MKPIKPLTCLLALCFSGSASADVTMEVPDDVDLLVANGSKPKLSGGFFASTKTLELPDGENQIVFRYSPYFSQG---ND- 76 (216)
T ss_pred CCchHHHHHHHHHHhhhhhhheEEEeCCCceEEEEECCEecccccccccCCceeEeCCCceEEEEEEeEeeccC---CC-
Confidence 677766666655554443333 123344566666666653211 11234554444 443332110 00
Q ss_pred HHHHHHHHhcCcceEEEEEccCC---------chHHHHHHcCCCCccEEEEEcCCCeEEEEE------eCCCCHHHHHHH
Q 024784 160 DVYRVEQQYKDRVNFVMLNVDNT---------KWEQELDEFGVEGIPHFAFLDREGNEEGNV------VGRLPRQYLLEN 224 (262)
Q Consensus 160 ~L~~l~~~~~~~v~~v~V~vD~~---------~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~------~G~~~~e~l~~~ 224 (262)
.+.+.....++.++.+.. .....+++|. . -|.+-++|.+|+.+... .|.....++.+.
T Consensus 77 -----~~~~~S~p~IvtF~a~~~~~~l~~P~~~~~~~a~~f~-~-~p~~~L~d~~g~~I~~~qd~L~~~G~~~~~d~e~e 149 (216)
T PRK04517 77 -----RIIVESDVIIATFDAANTELTFDMPKYRDARQAEKAI-K-TMQWQLVDEQGKAVEVRQDKLIKEGMQIGRDYERE 149 (216)
T ss_pred -----ceEEECCCEEEEEecCCcEEEEECCCCCCHHHHHHHH-h-CCcEEEEcCCCCEEEEEEEEeccCCCccccCHHHH
Confidence 122333344445554422 2356778887 3 39999999999886432 354444567777
Q ss_pred HHHHhCCC
Q 024784 225 VDALAHGK 232 (262)
Q Consensus 225 l~~l~~~~ 232 (262)
+.++-..+
T Consensus 150 ~~~YN~~~ 157 (216)
T PRK04517 150 AAEYNKTG 157 (216)
T ss_pred HHHHhhcC
Confidence 77776544
No 272
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=77.66 E-value=20 Score=25.87 Aligned_cols=60 Identities=10% Similarity=0.162 Sum_probs=36.1
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEE
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv 209 (262)
+..|+..+|++|++..-.|... +-.+.++.++.+... +++.+......+|++.. .+|..+
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~----gl~~~~~~v~~~~~~-~~~~~~np~~~vPvL~~--~~g~~l 78 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK----NIPHEVININLKDKP-DWFLEKNPQGKVPALEI--DEGKVV 78 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc----CCCCeEEEeCCCCCc-HHHHhhCCCCCcCEEEE--CCCCEE
Confidence 3345678899999876555542 222556666554322 34566666778999864 335543
No 273
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=75.78 E-value=11 Score=25.56 Aligned_cols=52 Identities=10% Similarity=-0.031 Sum_probs=31.3
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEE
Q 024784 144 LEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFA 200 (262)
Q Consensus 144 V~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~v 200 (262)
..|+.++|++|++..-.+... +-.+..+.++.+.. ..++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~----gi~~~~~~v~~~~~-~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEK----GVSVEIIDVDPDNP-PEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHc----CCccEEEEcCCCCC-CHHHHhhCCCCCCCEEE
Confidence 356788999999987665442 21244444554422 23555556667899663
No 274
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.11 E-value=5.7 Score=33.62 Aligned_cols=85 Identities=16% Similarity=0.216 Sum_probs=55.6
Q ss_pred ccccccccchHHHhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccC-CchHHHHHHcCCCCccEEE
Q 024784 123 KDLSAAALPYEQALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDN-TKWEQELDEFGVEGIPHFA 200 (262)
Q Consensus 123 ~~~~g~~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~-~~~~~l~~~~gi~~~Pt~v 200 (262)
-+..++.+++.++.++++.+|...--+.|-.|+++..+|.++..-++.. +.++.|--.. .+.+.++++=. +=.-+
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~~---f~gev 111 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQTY---FSGEV 111 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhcccC---cceeE
Confidence 5667788899998888999999999999999999999999884444433 5555554311 11123333222 22245
Q ss_pred EEcCCCeEEE
Q 024784 201 FLDREGNEEG 210 (262)
Q Consensus 201 liD~~Gkiv~ 210 (262)
++|++-+.+.
T Consensus 112 ylD~~~~~Y~ 121 (197)
T KOG4498|consen 112 YLDPHRGFYK 121 (197)
T ss_pred EEcCccceec
Confidence 6667665543
No 275
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=73.03 E-value=6.2 Score=32.47 Aligned_cols=29 Identities=17% Similarity=0.464 Sum_probs=25.4
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCc
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDR 171 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~ 171 (262)
|.+|+-+.||+|-...+.|.++.++++..
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~ 31 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGG 31 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCC
Confidence 66788999999999999999999998433
No 276
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=72.02 E-value=6.8 Score=26.80 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=34.0
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCC--chHHHHHHcCCCCccEEE
Q 024784 144 LEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNT--KWEQELDEFGVEGIPHFA 200 (262)
Q Consensus 144 V~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~--~~~~l~~~~gi~~~Pt~v 200 (262)
..|+.++|+.|++..-.+... +-.+.++.++.... ...++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~----gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL----GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc----CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 357789999999777555553 22255666665332 234666666677899994
No 277
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=71.05 E-value=8 Score=33.02 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=34.2
Q ss_pred HHHHHcCCCCccEEEEEcCCCeEEEEEeC--CCCHHHHHHHHHHHhC
Q 024784 186 QELDEFGVEGIPHFAFLDREGNEEGNVVG--RLPRQYLLENVDALAH 230 (262)
Q Consensus 186 ~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G--~~~~e~l~~~l~~l~~ 230 (262)
.+++++|+.++||+++.+ +|+..-.-.| ..+.+.+...+.+.+.
T Consensus 165 ~l~~rlg~~GfPTl~le~-ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 165 RLMQRLGAAGFPTLALER-NGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHhccCCCCeeeeee-CCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 456789999999999994 9988666666 4566888888877654
No 278
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=68.58 E-value=12 Score=27.95 Aligned_cols=42 Identities=26% Similarity=0.299 Sum_probs=33.4
Q ss_pred ccEEEEEcC--CCeEEEEEeCCCCHHHHHHHHHHHhCCCCCCCcccccC
Q 024784 196 IPHFAFLDR--EGNEEGNVVGRLPRQYLLENVDALAHGKASIPHARIVG 242 (262)
Q Consensus 196 ~Pt~vliD~--~Gkiv~~~~G~~~~e~l~~~l~~l~~~~~~~~~~~~~g 242 (262)
=|+++++ + +| .+.|..+++++.+.|++.+.+...++..++.+
T Consensus 53 gp~vvvy-P~~~g----~wy~~v~p~~v~~Iv~~hl~~g~~v~~~~~~~ 96 (97)
T cd03062 53 AGNVIIY-PKGDG----IWYGRVTPEHVPPIVDRLILGGKIIPELRRGG 96 (97)
T ss_pred CCEEEEE-eCCCe----eEEeecCHHHHHHHHHHHhcCCcCCcccccCC
Confidence 5888888 7 55 46677899999999999999877777766543
No 279
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=67.41 E-value=23 Score=33.30 Aligned_cols=82 Identities=16% Similarity=0.365 Sum_probs=54.8
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCC
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLP 217 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~ 217 (262)
+|..-+=-|++-.|..|...-..|+- ..-++.++.-+.||--.. .+..+.-+|.++||+++ ||++.+ .|..+
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~-msvlNp~I~H~~IdGa~F--q~Evear~IMaVPtvfl---nGe~fg--~GRmt 186 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNL-MSVLNPRIKHTAIDGALF--QDEVEARNIMAVPTVFL---NGEEFG--QGRMT 186 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHH-HHhcCCCceeEEecchhh--HhHHHhccceecceEEE---cchhhc--cccee
Confidence 45555666778889999877655554 334555455555554433 36677789999999876 777644 46777
Q ss_pred HHHHHHHHHH
Q 024784 218 RQYLLENVDA 227 (262)
Q Consensus 218 ~e~l~~~l~~ 227 (262)
.+++...|..
T Consensus 187 leeilaki~~ 196 (520)
T COG3634 187 LEEILAKIDT 196 (520)
T ss_pred HHHHHHHhcC
Confidence 7777666654
No 280
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=65.50 E-value=10 Score=31.04 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=25.4
Q ss_pred HHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHH
Q 024784 186 QELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENV 225 (262)
Q Consensus 186 ~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l 225 (262)
+.+.++||.++||+++ +|+ .+.|....+.+.+.|
T Consensus 158 ~~a~~~gi~gvPtfvv---~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 158 EEAIARGVFGVPTFVV---DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHcCCCcCCeEEE---CCe---eecccccHHHHHHHh
Confidence 5567889999999987 565 445877777766654
No 281
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=65.46 E-value=82 Score=27.65 Aligned_cols=94 Identities=12% Similarity=0.167 Sum_probs=49.5
Q ss_pred CCcEEEEEEcCC-Chh-hHhhhHHHHHHHHHh---cC-cceEEEEEccCCc--hHHHHHHcCCCC---------------
Q 024784 139 GKPTVLEFYADW-CEV-CRELAPDVYRVEQQY---KD-RVNFVMLNVDNTK--WEQELDEFGVEG--------------- 195 (262)
Q Consensus 139 ~k~vlV~F~a~w-C~~-C~~~~p~L~~l~~~~---~~-~v~~v~V~vD~~~--~~~l~~~~gi~~--------------- 195 (262)
+++|-|.+|.+- =+. =......+.++.++| .+ ++.+-.+|.+... ..+.++.|||..
T Consensus 24 ~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~~ 103 (271)
T PF09822_consen 24 DEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQIEIVDNGKASIVT 103 (271)
T ss_pred CCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccceeeccccccccee
Confidence 556766666553 111 223333444333333 34 6889999885443 345566788876
Q ss_pred -ccEEEEEcCCCeEEEEEe----CCCCHHHHHHHHHHHhCCC
Q 024784 196 -IPHFAFLDREGNEEGNVV----GRLPRQYLLENVDALAHGK 232 (262)
Q Consensus 196 -~Pt~vliD~~Gkiv~~~~----G~~~~e~l~~~l~~l~~~~ 232 (262)
++.+++-..+...+-.+. ...-+.+|...|.++..++
T Consensus 104 ~~~~~~v~~~~~~~~i~~~~~~~~~~~E~~lt~aI~~v~~~~ 145 (271)
T PF09822_consen 104 VYGGIVVEYGDREEVIPFLDSMSEFNLEYELTSAIRRVTSDE 145 (271)
T ss_pred ecCeEEEEECCeEEEeecccccccccHHHHHHHHHHHHhccc
Confidence 344444211111111111 1223778999999998874
No 282
>COG3411 Ferredoxin [Energy production and conversion]
Probab=64.77 E-value=22 Score=24.71 Aligned_cols=41 Identities=15% Similarity=0.051 Sum_probs=31.9
Q ss_pred ccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHhCCCCCCCccccc
Q 024784 196 IPHFAFLDREGNEEGNVVGRLPRQYLLENVDALAHGKASIPHARIV 241 (262)
Q Consensus 196 ~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~~~~~~~~~~~~~ 241 (262)
=|+++++ ++| .+.+..+.+...+++++++.+...+......
T Consensus 17 gPvl~vY-peg----vWY~~V~p~~a~rIv~~hl~~Gr~Ve~~~~~ 57 (64)
T COG3411 17 GPVLVVY-PEG----VWYTRVDPEDARRIVQSHLLGGRPVEELIYH 57 (64)
T ss_pred CCEEEEe-cCC----eeEeccCHHHHHHHHHHHHhCCCcchhhccc
Confidence 4888888 888 5667789999999999999877565554433
No 283
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=63.34 E-value=25 Score=30.19 Aligned_cols=39 Identities=18% Similarity=0.334 Sum_probs=28.4
Q ss_pred HHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Q 024784 186 QELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVD 226 (262)
Q Consensus 186 ~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~ 226 (262)
.+.++|+|+.+|++++... .-..++.|.++.++-.+.|.
T Consensus 153 ~lF~~F~I~~VPafVv~C~--~~yD~I~GNIsl~~ALe~iA 191 (212)
T PRK13730 153 TLFSQYGIRSVPALVVFCS--QGYDIIRGNLRVGQALEKVA 191 (212)
T ss_pred HHHHhcCCccccEEEEEcC--CCCCEEEecccHHHHHHHHH
Confidence 6899999999999999744 33457778888554444443
No 284
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=62.78 E-value=52 Score=29.00 Aligned_cols=84 Identities=17% Similarity=0.261 Sum_probs=51.6
Q ss_pred cEEEEEE-cCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCC----------------chHHHHHHcCCCCccEEEEEc
Q 024784 141 PTVLEFY-ADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNT----------------KWEQELDEFGVEGIPHFAFLD 203 (262)
Q Consensus 141 ~vlV~F~-a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~----------------~~~~l~~~~gi~~~Pt~vliD 203 (262)
+.||+.| +..|..|-.....|.++.++-. +.-...++|-= ......+.|+..+++|=-.|
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~~~--vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQav- 118 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADDPG--VLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAV- 118 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccCCC--EEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhe-
Confidence 3455555 7789999999888888766533 34444444411 11245567788776654444
Q ss_pred CCCeEEEEEeCCCCHHHHHHHHHHHhC
Q 024784 204 REGNEEGNVVGRLPRQYLLENVDALAH 230 (262)
Q Consensus 204 ~~Gkiv~~~~G~~~~e~l~~~l~~l~~ 230 (262)
-+|+... .| .+..++.+.|+...+
T Consensus 119 vnGr~~~--~G-ad~~~i~~~i~a~~~ 142 (261)
T COG5429 119 VNGRVHA--NG-ADPGAIEDAIAAMAR 142 (261)
T ss_pred eechhhh--cC-CCHHHHHHHHHHhhc
Confidence 3676532 23 567778888877663
No 285
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=62.58 E-value=45 Score=26.77 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=46.2
Q ss_pred CCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCc-cEEEEEcCCCeEEE
Q 024784 138 NGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGI-PHFAFLDREGNEEG 210 (262)
Q Consensus 138 ~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~-Pt~vliD~~Gkiv~ 210 (262)
.+++-+|.+|---|+.|......|.+. -.+ -.+..+++..+....+.+.+++.-- +-+++++++|+...
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~---D~~-~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~ 74 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRR---DQG-GRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLV 74 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHh---ccC-CcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEe
Confidence 367778889999999999866555442 222 2455555555555588888888643 56666668887644
No 286
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.45 E-value=74 Score=23.93 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=47.7
Q ss_pred cEEEEEE-cC-CChhhHhh------hHHHHH-HHHHhcCc-ceEEEEEccCCchH----HHHHHcCC--CCccEEEEEcC
Q 024784 141 PTVLEFY-AD-WCEVCREL------APDVYR-VEQQYKDR-VNFVMLNVDNTKWE----QELDEFGV--EGIPHFAFLDR 204 (262)
Q Consensus 141 ~vlV~F~-a~-wC~~C~~~------~p~L~~-l~~~~~~~-v~~v~V~vD~~~~~----~l~~~~gi--~~~Pt~vliD~ 204 (262)
.+.+.+| |+ -|..|..+ ...|+. +.++|.+. +.+-.||+.+...+ +++++..- .-+|-+++
T Consensus 4 ~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivv--- 80 (106)
T COG4837 4 EAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVV--- 80 (106)
T ss_pred eeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEE---
Confidence 3444444 33 39999654 334443 44567776 88999998554433 33443322 25776655
Q ss_pred CCeEEEEEeCCCCHHHHHHHHHHH
Q 024784 205 EGNEEGNVVGRLPRQYLLENVDAL 228 (262)
Q Consensus 205 ~Gkiv~~~~G~~~~e~l~~~l~~l 228 (262)
+++++. .|.....++.+.+.+.
T Consensus 81 edeiVa--eGnprlKdiy~~m~d~ 102 (106)
T COG4837 81 EDEIVA--EGNPRLKDIYRVMDDK 102 (106)
T ss_pred cceEee--cCCchHHHHHHHHHHh
Confidence 666655 4666667777666543
No 287
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=59.28 E-value=26 Score=23.54 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=32.0
Q ss_pred EEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccC--CchHHHHHHcCCCCccEEEE
Q 024784 145 EFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDN--TKWEQELDEFGVEGIPHFAF 201 (262)
Q Consensus 145 ~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~--~~~~~l~~~~gi~~~Pt~vl 201 (262)
.|+.++|+.|....-.+... +-.+..+.++... .....+.+......+|++..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALL----GIPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEeCCCCccHHHHHHHHHHc----CCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 46788999999876555543 2124555555432 12245555555668998853
No 288
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.84 E-value=17 Score=28.07 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhccCcc-c-------------cccccc---ccccchHHHhcCCCcEEEEEEcCC
Q 024784 92 NKEINRGIAVASTLAALGLFLFTRLDFG-V-------------SLKDLS---AAALPYEQALTNGKPTVLEFYADW 150 (262)
Q Consensus 92 mk~~~~~l~lllll~~~~~~~~~~~~~~-~-------------~l~~~~---g~~~~l~~~~~~~k~vlV~F~a~w 150 (262)
||++...++.+++++.++++.+-....+ + .-...+ +...++....++|+-.-|.|.|+.
T Consensus 1 MKkil~~ilall~~ii~a~~~~~~~~~d~fnpyvk~~~~y~k~~~~t~~~~~~y~y~i~ayn~~Gkkk~v~f~a~~ 76 (113)
T COG5294 1 MKKILIGILALLLIIIGALFIFYNINYDRFNPYVKITDSYAKVEEDTQDGSPGYEYTITAYNKNGKKKEVKFTATH 76 (113)
T ss_pred CcchHHHHHHHHHHHHhhheEEEecccCCCCceEEEeccceecccccccCCccceeeehhhccCCcEEEEEEEecC
Confidence 6776666666655555555554332211 0 000000 233455566677888888888874
No 289
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=58.26 E-value=1.9e+02 Score=28.48 Aligned_cols=59 Identities=15% Similarity=0.343 Sum_probs=31.9
Q ss_pred CCcEEEEEEcCCC-h-hhHhhhHHHHHHHHHh---cCcceEEEEEccCCchH---H---HHHHcCCCCcc
Q 024784 139 GKPTVLEFYADWC-E-VCRELAPDVYRVEQQY---KDRVNFVMLNVDNTKWE---Q---ELDEFGVEGIP 197 (262)
Q Consensus 139 ~k~vlV~F~a~wC-~-~C~~~~p~L~~l~~~~---~~~v~~v~V~vD~~~~~---~---l~~~~gi~~~P 197 (262)
+++|-|.+|.+-= + .=......+.++.++| .+++.+-.+|.+..... + -+.+|||...+
T Consensus 47 ~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~~e~~~~~~~~~~~gi~~~~ 116 (552)
T TIGR03521 47 DDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEEDEQGEEILDSLAQYGIKPAN 116 (552)
T ss_pred CCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHHHHHHHHcCCCcce
Confidence 6777777765432 2 1123334444444444 34488888887664322 2 34558887554
No 290
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=54.56 E-value=10 Score=26.70 Aligned_cols=40 Identities=8% Similarity=0.137 Sum_probs=30.9
Q ss_pred ceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEE
Q 024784 172 VNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGN 211 (262)
Q Consensus 172 v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~ 211 (262)
+.++.++++-+...++++++.+...-..+++|++|+++..
T Consensus 29 ~Gvv~~di~l~~l~~~i~~~~~~~~g~~~ivd~~G~ii~h 68 (81)
T PF02743_consen 29 IGVVGIDISLDQLSEIISNIKFGNNGYAFIVDKNGTIIAH 68 (81)
T ss_dssp EEEEEEEEEHHHHHHHHTTSBBTTTBEEEEEETTSBBCE-
T ss_pred EEEEEEEeccceeeeEEEeeEECCCEEEEEEECCCCEEEe
Confidence 5677777777666677887777777789999999998875
No 291
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=53.21 E-value=14 Score=28.29 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=41.4
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCC-----chHHHHHHcCCCCccEEEEEcCCCeEEEEEe---CC
Q 024784 144 LEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNT-----KWEQELDEFGVEGIPHFAFLDREGNEEGNVV---GR 215 (262)
Q Consensus 144 V~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~-----~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~---G~ 215 (262)
..|+.+.|..|++....|.+ .+ +.+..+|+-.. +...+++..| .+.--+++.+|+...... ..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~----~~--i~~~~~di~~~~~t~~el~~~l~~~~---~~~~~lin~~~~~y~~l~~~~~~ 72 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEE----AG--IEPEIVEYLKTPPTAAELRELLAKLG---ISPRDLLRTKEAPYKELGLADPE 72 (112)
T ss_pred EEEECCCCHHHHHHHHHHHH----CC--CCeEEEecccCCcCHHHHHHHHHHcC---CCHHHHHhcCCchHHHcCCCccC
Confidence 46779999999998766554 33 45556665432 2345555555 223345566665443221 23
Q ss_pred CCHHHHHHHHHH
Q 024784 216 LPRQYLLENVDA 227 (262)
Q Consensus 216 ~~~e~l~~~l~~ 227 (262)
.+.+++.+.|.+
T Consensus 73 ls~~e~i~ll~~ 84 (112)
T cd03034 73 LSDEELIDAMAA 84 (112)
T ss_pred CCHHHHHHHHHh
Confidence 455555555544
No 292
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=52.68 E-value=32 Score=32.07 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=28.5
Q ss_pred HHHHHHcCCCCcc-EEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHh
Q 024784 185 EQELDEFGVEGIP-HFAFLDREGNEEGNVVGRLPRQYLLENVDALA 229 (262)
Q Consensus 185 ~~l~~~~gi~~~P-t~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~ 229 (262)
+.-..++||.+-+ ..++| .+|+++.++.+..-.++|.+.|+++.
T Consensus 313 Ea~~aDIGIaG~~~~~~vf-~~Gk~v~kv~~~~~~~~l~~~i~~~~ 357 (360)
T PRK00366 313 EAKEADIGIAGGNPKGPVF-VDGEKIKTLPEENIVEELEAEIEAYA 357 (360)
T ss_pred chhhCcEeEecCCCceEEE-ECCEEeeeeChHhHHHHHHHHHHHHH
Confidence 4666788988655 44555 89999988765444455555555543
No 293
>PF15284 PAGK: Phage-encoded virulence factor
Probab=52.35 E-value=17 Score=24.89 Aligned_cols=21 Identities=10% Similarity=-0.040 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 024784 92 NKEINRGIAVASTLAALGLFL 112 (262)
Q Consensus 92 mk~~~~~l~lllll~~~~~~~ 112 (262)
||+++..++.+++++....|.
T Consensus 1 Mkk~ksifL~l~~~LsA~~FS 21 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFS 21 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhh
Confidence 677777666555555444433
No 294
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=52.06 E-value=91 Score=26.99 Aligned_cols=69 Identities=13% Similarity=0.050 Sum_probs=44.1
Q ss_pred CChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHh
Q 024784 150 WCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVDALA 229 (262)
Q Consensus 150 wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~ 229 (262)
.|+.|+.+.-.|. .+.. .+++..||+.... +.+.+-..-...|.+ .+|.+ +..+.+.++++|++-+
T Consensus 20 dcpf~qr~~m~L~---~k~~-~f~vttVd~~~kp-~~f~~~sp~~~~P~l-~~d~~--------~~tDs~~Ie~~Lee~l 85 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV-PFKVTTVDLSRKP-EWFLDISPGGKPPVL-KFDEK--------WVTDSDKIEEFLEEKL 85 (221)
T ss_pred CChhHHHHHHHHH---HcCC-CceEEEeecCCCc-HHHHhhCCCCCCCeE-EeCCc--------eeccHHHHHHHHHHhc
Confidence 4888888776665 2221 3788899998776 344455555556654 55443 2357788888888877
Q ss_pred CCC
Q 024784 230 HGK 232 (262)
Q Consensus 230 ~~~ 232 (262)
..-
T Consensus 86 ~~p 88 (221)
T KOG1422|consen 86 PPP 88 (221)
T ss_pred CCC
Confidence 644
No 295
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=50.66 E-value=25 Score=27.22 Aligned_cols=52 Identities=12% Similarity=0.376 Sum_probs=37.6
Q ss_pred CChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCC--CCccEEEEEc
Q 024784 150 WCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGV--EGIPHFAFLD 203 (262)
Q Consensus 150 wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi--~~~Pt~vliD 203 (262)
.|++|..+...|.. .-.+.+.+.+..|+..... ..+.+..|- ++.|++++=|
T Consensus 23 ~Cp~c~~iEGlLa~-~P~l~~~ldV~rV~f~RPR-~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLAS-FPDLRERLDVRRVDFPRPR-QAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhh-ChhhhhcccEEEeCCCCch-HHHHHHhChhccCCCEEEeCC
Confidence 49999999877765 3334445789999988765 466666664 5899998853
No 296
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=50.41 E-value=24 Score=32.59 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=53.6
Q ss_pred ChhhHhhh----HHHHHHHHHhcC-----cceEEEEEccCCchHHHHHHcCCCC--ccEEEEEcCCCeEEEEEeCCCCHH
Q 024784 151 CEVCRELA----PDVYRVEQQYKD-----RVNFVMLNVDNTKWEQELDEFGVEG--IPHFAFLDREGNEEGNVVGRLPRQ 219 (262)
Q Consensus 151 C~~C~~~~----p~L~~l~~~~~~-----~v~~v~V~vD~~~~~~l~~~~gi~~--~Pt~vliD~~Gkiv~~~~G~~~~e 219 (262)
||.|-... ..++++.+++.+ ++-+.+.-++... +.--..+|+.+ -|...+| .+|+++.++.+..-.+
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPG-Eak~AdiGia~~~~~~~~~f-~~g~~~~~~~~~~~~e 341 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPG-EAKHADIGIAGGGKGSGPVF-VKGEIIKKLPEEDIVE 341 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCc-chhccceeeecCCCCeeEEE-ECCeEEEecChhhHHH
Confidence 88886544 333444444432 1455555666543 34556778864 5788888 8999999988877788
Q ss_pred HHHHHHHHHhCCC
Q 024784 220 YLLENVDALAHGK 232 (262)
Q Consensus 220 ~l~~~l~~l~~~~ 232 (262)
+|...++++.+..
T Consensus 342 el~~~i~~~~~~~ 354 (361)
T COG0821 342 ELEALIEAYAEER 354 (361)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877654
No 297
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=49.05 E-value=20 Score=27.52 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=42.6
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCC-----chHHHHHHcCCCCccE-EEEEcCCCeEEEEEe---C
Q 024784 144 LEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNT-----KWEQELDEFGVEGIPH-FAFLDREGNEEGNVV---G 214 (262)
Q Consensus 144 V~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~-----~~~~l~~~~gi~~~Pt-~vliD~~Gkiv~~~~---G 214 (262)
..|+.+.|..|++....|.+- + +.+..+|+-.. +..++++..|+ +. --+++..|+...... .
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~----~--i~~~~~di~~~p~t~~el~~~l~~~g~---~~~~~lin~~~~~~~~l~~~~~ 72 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK----G--IEPEVVKYLKNPPTKSELEAIFAKLGL---TVAREMIRTKEALYKELGLSDP 72 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC----C--CCeEEEeccCCCcCHHHHHHHHHHcCC---chHHHHHhcCCcHHHHcCCCcc
Confidence 467799999999988777652 2 45555665433 23455566553 32 225667776544321 1
Q ss_pred CCCHHHHHHHHHH
Q 024784 215 RLPRQYLLENVDA 227 (262)
Q Consensus 215 ~~~~e~l~~~l~~ 227 (262)
..+.+++.+.|.+
T Consensus 73 ~ls~~e~i~~l~~ 85 (114)
T TIGR00014 73 NLSDQELLDAMVA 85 (114)
T ss_pred CCCHHHHHHHHHH
Confidence 3455555555544
No 298
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=47.96 E-value=28 Score=30.38 Aligned_cols=33 Identities=12% Similarity=0.267 Sum_probs=26.4
Q ss_pred CCcEEEEEEcC-CChhhHhhhHHHHHHHHHhcCc
Q 024784 139 GKPTVLEFYAD-WCEVCRELAPDVYRVEQQYKDR 171 (262)
Q Consensus 139 ~k~vlV~F~a~-wC~~C~~~~p~L~~l~~~~~~~ 171 (262)
.+.+-|++|++ -||+|-.-.+.|.++...++..
T Consensus 3 ~~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~ 36 (225)
T COG2761 3 PMKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQE 36 (225)
T ss_pred CceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcc
Confidence 34566677755 5999999999999999998864
No 299
>PRK10026 arsenate reductase; Provisional
Probab=47.65 E-value=30 Score=27.83 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=17.1
Q ss_pred EEEEEcCCChhhHhhhHHHHH
Q 024784 143 VLEFYADWCEVCRELAPDVYR 163 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~ 163 (262)
+..|+.+.|..|++....|.+
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~ 24 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRN 24 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 456779999999999877765
No 300
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=47.55 E-value=24 Score=28.93 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=17.4
Q ss_pred HHHHHcCCCCccEEEEEcCCC
Q 024784 186 QELDEFGVEGIPHFAFLDREG 206 (262)
Q Consensus 186 ~l~~~~gi~~~Pt~vliD~~G 206 (262)
+.+.++||.++||+++.|.++
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCCccCEEEEEeCCe
Confidence 567789999999999986554
No 301
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=47.19 E-value=17 Score=28.25 Aligned_cols=64 Identities=11% Similarity=0.063 Sum_probs=33.2
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEE
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEG 210 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~ 210 (262)
+..|+.+-|..|++....|++ ++-.++++-+-.+....+++.+-+...+.+.--+++..|....
T Consensus 3 itiy~~p~C~t~rka~~~L~~----~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~~~li~t~~~~~r 66 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE----HGIEYTFIDYLKTPPSREELKKILSKLGDGVEELINTRGTTYR 66 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH----cCCCcEEEEeecCCCCHHHHHHHHHHcCccHHHHHHhccchHH
Confidence 456779999999999877765 3322344444333333333333222223233334445554433
No 302
>PRK13620 psbV cytochrome c-550; Provisional
Probab=45.80 E-value=7.1 Score=33.50 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHHHhC
Q 024784 214 GRLPRQYLLENVDALAH 230 (262)
Q Consensus 214 G~~~~e~l~~~l~~l~~ 230 (262)
+..+.|+|......++-
T Consensus 183 r~LtdedL~aIa~~IL~ 199 (215)
T PRK13620 183 RNLTEDDLVAISGHILL 199 (215)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 34788999888777654
No 303
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=45.69 E-value=5.9 Score=28.91 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=40.8
Q ss_pred cCCChhhHhhhHHHHHHHHHhc-CcceEEEEEccCCchHHHHHHcCCCCccEEEEE
Q 024784 148 ADWCEVCRELAPDVYRVEQQYK-DRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFL 202 (262)
Q Consensus 148 a~wC~~C~~~~p~L~~l~~~~~-~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vli 202 (262)
+..-+........+..+.+.+- +.+.+-.||+...+ ++++.++|-.+||++-.
T Consensus 5 ~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P--~lAe~~~ivAtPtLik~ 58 (82)
T PF07689_consen 5 AGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQP--ELAEEDRIVATPTLIKE 58 (82)
T ss_dssp SSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSH--SHHTTTEEECHHHHHTT
T ss_pred CCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCH--hHHhHCCeeecceEeec
Confidence 4444556777788888877754 44899999999876 89999999999997643
No 304
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=44.59 E-value=62 Score=22.31 Aligned_cols=59 Identities=5% Similarity=-0.142 Sum_probs=35.5
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCC--chHHHHHHcCCCCccEEEEEcCCCeEE
Q 024784 144 LEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNT--KWEQELDEFGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 144 V~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~--~~~~l~~~~gi~~~Pt~vliD~~Gkiv 209 (262)
..|+.+.|+.|+...-.+.+ .+-.+.++.++.... ...++.+-.....+|++. | +|..+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e----~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~-~g~~l 62 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAE----KGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--H-GDNII 62 (73)
T ss_pred EEecCCCCccHHHHHHHHHH----cCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--E-CCEEE
Confidence 35678889999877644433 222266777766432 223566666667899884 2 56543
No 305
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=44.53 E-value=86 Score=21.11 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=33.0
Q ss_pred EEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEE
Q 024784 145 EFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 145 ~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv 209 (262)
.|+.+.|++|.+..-.+.... .+-.+..+.++... ...++.+......+|.+.. .+|..+
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~--~~i~~~~~~~~~~~-~~~~~~~~~p~~~vP~l~~--~~g~~l 62 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETG--LGDDVELVLVNPWS-DDESLLAVNPLGKIPALVL--DDGEAL 62 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhC--CCCCcEEEEcCccc-CChHHHHhCCCCCCCEEEE--CCCCEE
Confidence 456788999997764444310 12124455444322 2245556666678997754 356543
No 306
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=41.70 E-value=69 Score=23.80 Aligned_cols=44 Identities=18% Similarity=0.091 Sum_probs=33.0
Q ss_pred ccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHhCCCCCCCcccccCCC
Q 024784 196 IPHFAFLDREGNEEGNVVGRLPRQYLLENVDALAHGKASIPHARIVGQY 244 (262)
Q Consensus 196 ~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~~~~~~~~~~~~~g~~ 244 (262)
=|.+.+.+++|++ +.+..++++..+.+++++.. +..|....|++
T Consensus 48 ePlV~V~~p~g~v---~Y~~V~~edv~~Iv~~~~~~--~~~h~~~~g~~ 91 (92)
T cd03063 48 EPLVEVETPGGRV---AYGPVTPADVASLLDAGALE--GGEHPLCLGLT 91 (92)
T ss_pred CCEEEEEeCCCcE---EEEeCCHHHHHHHHHHHhhc--CCcCchhcCCC
Confidence 4888887788763 33678999999999998873 35676777764
No 307
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=41.32 E-value=68 Score=26.36 Aligned_cols=45 Identities=22% Similarity=0.483 Sum_probs=29.9
Q ss_pred hcCCCcEEEEEE--cCCChhhHh-hhHHHHHHHHHhcCc--ceEEEEEccC
Q 024784 136 LTNGKPTVLEFY--ADWCEVCRE-LAPDVYRVEQQYKDR--VNFVMLNVDN 181 (262)
Q Consensus 136 ~~~~k~vlV~F~--a~wC~~C~~-~~p~L~~l~~~~~~~--v~~v~V~vD~ 181 (262)
+.+||.|+| |. +..-|.|-. -.|.+.++++++..+ -.++.|.+++
T Consensus 34 lf~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVND 83 (165)
T COG0678 34 LFKGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVND 83 (165)
T ss_pred hcCCCEEEE-EeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeCc
Confidence 345555444 44 555688866 578888888888765 4677777775
No 308
>PRK01904 hypothetical protein; Provisional
Probab=41.09 E-value=2.1e+02 Score=24.58 Aligned_cols=130 Identities=14% Similarity=0.175 Sum_probs=63.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh-hccCcccccccccccccchHH-------HhcCC--CcEEEEEEcCCChhhHhhhHHH
Q 024784 92 NKEINRGIAVASTLAALGLFLF-TRLDFGVSLKDLSAAALPYEQ-------ALTNG--KPTVLEFYADWCEVCRELAPDV 161 (262)
Q Consensus 92 mk~~~~~l~lllll~~~~~~~~-~~~~~~~~l~~~~g~~~~l~~-------~~~~~--k~vlV~F~a~wC~~C~~~~p~L 161 (262)
||.+...++++++++....++. .....++++-.++|....... .+.+| .-+++.|....=..-
T Consensus 1 MK~~~~~~~~~~l~~s~~a~A~tL~lp~~i~lL~vnG~kv~~s~~~~~~~l~L~dgg~hQIv~ry~~~~~~~~------- 73 (219)
T PRK01904 1 MKLRKAALAVATLLTSTASFAGMVTTSSNIDFLAIDGQKASKSLLKEAKSFNINDTQVHQVVVRVSEIVRSGS------- 73 (219)
T ss_pred CchhHHHHHHHHHHHhHHhhHheeeCCCceEEEEECCEECccccccCCcceEeCCCCceEEEEEEeeccccCC-------
Confidence 6665544444444433333322 233445666667776553211 12233 345555544321110
Q ss_pred HHHHHHhcCcceEEEEEccCC---------chHHHHHHcCCCCccEEEEEcCCCeEEEEE------eCCCCHHHHHHHHH
Q 024784 162 YRVEQQYKDRVNFVMLNVDNT---------KWEQELDEFGVEGIPHFAFLDREGNEEGNV------VGRLPRQYLLENVD 226 (262)
Q Consensus 162 ~~l~~~~~~~v~~v~V~vD~~---------~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~------~G~~~~e~l~~~l~ 226 (262)
+ ...|.-..-++.++.+.. ....-+++|.-. |.+-+.|.+|+.|... .|.....++.+.+.
T Consensus 74 -~-~~~~~S~p~IvtF~a~~~~l~l~~P~~~~~~~a~~F~~~--P~~~L~d~~g~~V~~~qd~L~~~G~~~~~d~e~~~~ 149 (219)
T PRK01904 74 -D-RSLFESDPIIVTFQGTTEDIVISAPKLTNERDIDKFKKS--PNITVKTASGKEISTKQDYLKQEGFFPNSNLIDNLS 149 (219)
T ss_pred -C-ccEEeCCCEEEEEecCCeEEEEEcCCCCCHHHHHHHhhC--CcEEEEeCCCCEEEEEEEeecccCcccccCHHHHHH
Confidence 0 122333344555554422 224556666544 9999999999887432 24333345666666
Q ss_pred HHhCCC
Q 024784 227 ALAHGK 232 (262)
Q Consensus 227 ~l~~~~ 232 (262)
++-..+
T Consensus 150 ~YN~~~ 155 (219)
T PRK01904 150 EYNASG 155 (219)
T ss_pred HhhhcC
Confidence 665443
No 309
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=38.18 E-value=2.6e+02 Score=24.11 Aligned_cols=62 Identities=10% Similarity=0.231 Sum_probs=40.9
Q ss_pred cccccccccccchHHHhcCCCcEEE-EEE-----cCCChhhHhhhHHHHHHHHHhcCc-ceEEEEEccCC
Q 024784 120 VSLKDLSAAALPYEQALTNGKPTVL-EFY-----ADWCEVCRELAPDVYRVEQQYKDR-VNFVMLNVDNT 182 (262)
Q Consensus 120 ~~l~~~~g~~~~l~~~~~~~k~vlV-~F~-----a~wC~~C~~~~p~L~~l~~~~~~~-v~~v~V~vD~~ 182 (262)
..+...+|. +.+.+++....-.|| .|. ..-|+-|-.+...+.-....+..+ +.|+.|.-..-
T Consensus 49 Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~ 117 (211)
T PF05988_consen 49 YVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPL 117 (211)
T ss_pred eEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCH
Confidence 344444444 678887764333444 333 456999999999997666666665 88888877654
No 310
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=37.62 E-value=71 Score=21.25 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=8.5
Q ss_pred CCCcEEEEEEcC
Q 024784 138 NGKPTVLEFYAD 149 (262)
Q Consensus 138 ~~k~vlV~F~a~ 149 (262)
++.-+.|.|+.+
T Consensus 38 edQdv~ISf~~~ 49 (52)
T PF00879_consen 38 EDQDVSISFAGD 49 (52)
T ss_pred cCCcEEEEecCC
Confidence 466788888754
No 311
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=36.74 E-value=1.2e+02 Score=20.48 Aligned_cols=54 Identities=13% Similarity=0.085 Sum_probs=31.8
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCC--chHHHHHHcCCCCccEEE
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNT--KWEQELDEFGVEGIPHFA 200 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~--~~~~l~~~~gi~~~Pt~v 200 (262)
+..|+.+.|++|++..-.+.... -.+.++.++.... ..+.+.+......+|++.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~----i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~ 57 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKG----VDYELVPVDLTKGEHKSPEHLARNPFGQIPALE 57 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcC----CCcEEEEeCccccccCCHHHHhhCCCCCCCEEE
Confidence 33455667999988875555432 1245555554321 224566666777899874
No 312
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=36.65 E-value=1.8e+02 Score=21.77 Aligned_cols=85 Identities=6% Similarity=0.057 Sum_probs=49.4
Q ss_pred hHHHhcCC-CcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcC------
Q 024784 132 YEQALTNG-KPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDR------ 204 (262)
Q Consensus 132 l~~~~~~~-k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~------ 204 (262)
++..+... +.++|-|+..-=. .+...+.++++.+.+.+.|....- ..+.+++++.. |.++++-+
T Consensus 11 le~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~-----~~~~~~~~~~~-~~vvl~rp~~~~~k 81 (107)
T cd03068 11 VQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFD-----SEIFKSLKVSP-GQLVVFQPEKFQSK 81 (107)
T ss_pred HHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEECh-----HHHHHhcCCCC-CceEEECcHHHhhh
Confidence 34444455 6777767655322 355667788888877666633322 26778888874 55666622
Q ss_pred --CCeEEEEEeCC-CCH-HHHHHHHHH
Q 024784 205 --EGNEEGNVVGR-LPR-QYLLENVDA 227 (262)
Q Consensus 205 --~Gkiv~~~~G~-~~~-e~l~~~l~~ 227 (262)
+|.. .+.|. .+. ++|..+|+.
T Consensus 82 ~e~~~~--~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 82 YEPKSH--VLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred cCccee--eeeccccchHHHHHHHHhc
Confidence 2333 34554 344 448888764
No 313
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=35.91 E-value=19 Score=27.70 Aligned_cols=21 Identities=5% Similarity=-0.007 Sum_probs=16.2
Q ss_pred EEEEEcCCChhhHhhhHHHHH
Q 024784 143 VLEFYADWCEVCRELAPDVYR 163 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~ 163 (262)
+..|+.+.|..|++....|.+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA 22 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 346779999999988766654
No 314
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=35.64 E-value=1.8e+02 Score=21.43 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=41.8
Q ss_pred cCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Q 024784 148 ADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVDA 227 (262)
Q Consensus 148 a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~ 227 (262)
.-+|++|+...=.|.+. +-.+.++.+|.+..+ +.+.+..-...+|++. | +|.++ .+...+.++|++
T Consensus 19 ~g~cpf~~rvrl~L~eK----gi~ye~~~vd~~~~p-~~~~~~nP~g~vPvL~--~-~~~~i------~eS~~I~eYLde 84 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK----GVVFNVTTVDMKRKP-EDLKDLAPGTQPPFLL--Y-NGEVK------TDNNKIEEFLEE 84 (91)
T ss_pred CCCChhHHHHHHHHHHC----CCceEEEEeCCCCCC-HHHHHhCCCCCCCEEE--E-CCEEe------cCHHHHHHHHHH
Confidence 35799999877555543 211566666666544 4555555566799553 3 34433 355677788877
Q ss_pred HhC
Q 024784 228 LAH 230 (262)
Q Consensus 228 l~~ 230 (262)
...
T Consensus 85 ~~~ 87 (91)
T cd03061 85 TLC 87 (91)
T ss_pred Hcc
Confidence 654
No 315
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=35.08 E-value=84 Score=20.30 Aligned_cols=37 Identities=8% Similarity=0.106 Sum_probs=28.5
Q ss_pred ccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHhCCC
Q 024784 196 IPHFAFLDREGNEEGNVVGRLPRQYLLENVDALAHGK 232 (262)
Q Consensus 196 ~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~~~~ 232 (262)
-..+.+.+.||+++..-.++.+...-++-|+.+....
T Consensus 5 ~~~f~L~a~ng~viasse~Y~sk~~a~~~I~~Vk~~a 41 (49)
T PF07411_consen 5 QFRFRLKAGNGEVIASSEGYSSKADAEKGIESVKKNA 41 (49)
T ss_dssp EEEEEEE-TTS-EEEEBEEBSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCEEEecCCcCCHHHHHHHHHHHHHhC
Confidence 3467788899999999889999998888888876543
No 316
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=34.97 E-value=3.4e+02 Score=24.38 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=34.2
Q ss_pred HhhhHHHHHHHHHhcCcceEEEEEccC-CchH----HHHHHcCCC----CccEEEEEcCCCeEEEEEeC
Q 024784 155 RELAPDVYRVEQQYKDRVNFVMLNVDN-TKWE----QELDEFGVE----GIPHFAFLDREGNEEGNVVG 214 (262)
Q Consensus 155 ~~~~p~L~~l~~~~~~~v~~v~V~vD~-~~~~----~l~~~~gi~----~~Pt~vliD~~Gkiv~~~~G 214 (262)
..+...++++.++-..++.|+.|+-.. +..+ .+.++|++- .-=.++++|.+.+-+...+|
T Consensus 49 ~~Leq~l~~L~~kt~~QiaVv~vpSt~g~~IE~ya~rlfd~W~lG~k~~~dGvLLlVa~~dr~~rIevG 117 (271)
T COG1512 49 GALEQQLADLEQKTGAQIAVVTVPSTGGETIEQYATRLFDKWKLGDKAQDDGVLLLVAMNDRRVRIEVG 117 (271)
T ss_pred HHHHHHHHHHHhccCCeEEEEEecCCCCCCHHHHHHHHHHhcCCCccccCCCEEEEEEcCCCeEEEEEe
Confidence 455667777777777666666665433 3333 334555442 23468888888744433333
No 317
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=34.40 E-value=2.2e+02 Score=22.09 Aligned_cols=90 Identities=10% Similarity=0.079 Sum_probs=62.8
Q ss_pred CcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc--ceEEEEEccCCchH--HHHHHcCCC-CccEEEEEcCCCe--EEEEE
Q 024784 140 KPTVLEFYADWCEVCRELAPDVYRVEQQYKDR--VNFVMLNVDNTKWE--QELDEFGVE-GIPHFAFLDREGN--EEGNV 212 (262)
Q Consensus 140 k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~--v~~v~V~vD~~~~~--~l~~~~gi~-~~Pt~vliD~~Gk--iv~~~ 212 (262)
...++-|--.--+.-.++.+.|.++++++.++ ..|+-||-|+.+.- ---+.|+|. .-|.+=++|..-+ +-...
T Consensus 21 g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~m 100 (120)
T cd03074 21 GIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWMEM 100 (120)
T ss_pred CceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEec
Confidence 45677777777888999999999999999876 88899988876521 112456664 3587777764322 22233
Q ss_pred eCC---CCHHHHHHHHHHHh
Q 024784 213 VGR---LPRQYLLENVDALA 229 (262)
Q Consensus 213 ~G~---~~~e~l~~~l~~l~ 229 (262)
.+. .+.++|..||+.++
T Consensus 101 ~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 101 DDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred ccccccCcHHHHHHHHHhhC
Confidence 333 56889999998764
No 318
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=34.01 E-value=1.2e+02 Score=25.99 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=30.9
Q ss_pred cEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEE--ccCCchHHHHHHcCC
Q 024784 141 PTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLN--VDNTKWEQELDEFGV 193 (262)
Q Consensus 141 ~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~--vD~~~~~~l~~~~gi 193 (262)
-.+..|--+.|+.|......+.. -...+.++.|+ .|+.....-+.+.+|
T Consensus 110 ~rlalFvkd~C~~C~~~~~~l~a----~~~~~Diylvgs~~dD~~Ir~WA~~~~I 160 (200)
T TIGR03759 110 GRLALFVKDDCVACDARVQRLLA----DNAPLDLYLVGSQGDDERIRQWANRHQI 160 (200)
T ss_pred CeEEEEeCCCChHHHHHHHHHhc----CCCceeEEEecCCCCHHHHHHHHHHcCC
Confidence 34556666999999988877643 12228899998 444443444554444
No 319
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=33.86 E-value=52 Score=18.45 Aligned_cols=15 Identities=7% Similarity=-0.073 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHH
Q 024784 93 KEINRGIAVASTLAA 107 (262)
Q Consensus 93 k~~~~~l~lllll~~ 107 (262)
.+|+++++.+++++.
T Consensus 5 ~mmKkil~~l~a~~~ 19 (25)
T PF08139_consen 5 SMMKKILFPLLALFM 19 (25)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666555555443
No 320
>PRK10853 putative reductase; Provisional
Probab=33.03 E-value=13 Score=28.78 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=36.7
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCC-----chHHHHHHcCCCCccEEEEEcCCCeEEEE
Q 024784 143 VLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNT-----KWEQELDEFGVEGIPHFAFLDREGNEEGN 211 (262)
Q Consensus 143 lV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~-----~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~ 211 (262)
+..|+-+.|..|++....|.+- + +.+..+|+-.. ...++++++|+.. +++..|.....
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~----~--i~~~~~d~~k~p~s~~eL~~~l~~~g~~~-----l~n~~~~~~r~ 64 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ----G--IDYRFHDYRVDGLDSELLQGFIDELGWEA-----LLNTRGTTWRK 64 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc----C--CCcEEeehccCCcCHHHHHHHHHHcCHHH-----HHhcCCchHHh
Confidence 3456789999999988777652 2 45566665432 2345566666542 77788776543
No 321
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=32.66 E-value=83 Score=26.44 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred hHHHHHHcCCCCccEEEEEcCCC--eEEEEEeCCCCHHHHHHHHH
Q 024784 184 WEQELDEFGVEGIPHFAFLDREG--NEEGNVVGRLPRQYLLENVD 226 (262)
Q Consensus 184 ~~~l~~~~gi~~~Pt~vliD~~G--kiv~~~~G~~~~e~l~~~l~ 226 (262)
+.+.+.+.||.|+|++++=+.+| ++.+ |.-..+.+.+.|+
T Consensus 168 ~~~~A~~~Gv~GVP~fvv~~~~~~~e~fw---G~Drl~~~~~~l~ 209 (209)
T cd03021 168 NTDEALKYGAFGLPWIVVTNDKGKTEMFF---GSDRFEQVADFLG 209 (209)
T ss_pred HHHHHHHcCCCCCCEEEEEcCCCCcccee---cCCcHHHHHHHhC
No 322
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=30.93 E-value=95 Score=19.60 Aligned_cols=47 Identities=23% Similarity=0.444 Sum_probs=28.9
Q ss_pred EEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHH
Q 024784 174 FVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENV 225 (262)
Q Consensus 174 ~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l 225 (262)
++.++.+.+ ..++++.+.-.++..+.++|.+|++++. ++..++.+++
T Consensus 9 ~~~v~~~~~-l~~~~~~~~~~~~~~~~V~d~~~~~~G~----is~~dl~~~l 55 (57)
T PF00571_consen 9 PITVSPDDS-LEEALEIMRKNGISRLPVVDEDGKLVGI----ISRSDLLKAL 55 (57)
T ss_dssp SEEEETTSB-HHHHHHHHHHHTSSEEEEESTTSBEEEE----EEHHHHHHHH
T ss_pred CEEEcCcCc-HHHHHHHHHHcCCcEEEEEecCCEEEEE----EEHHHHHhhh
Confidence 455555543 3455555555557788899999877654 4666666554
No 323
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.99 E-value=67 Score=33.60 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCeEE----EEEeCCCCHHHHHHHHHHHh
Q 024784 194 EGIPHFAFLDREGNEE----GNVVGRLPRQYLLENVDALA 229 (262)
Q Consensus 194 ~~~Pt~vliD~~Gkiv----~~~~G~~~~e~l~~~l~~l~ 229 (262)
..+|.+.++|.+|++. +.+.| .+..+-++.|.+.+
T Consensus 286 h~Lp~i~i~d~dG~in~~~~~~~~G-l~r~eAR~kIv~~L 324 (877)
T COG0525 286 HNLPLINIIDEDGRINEEAAGEFAG-LDRFEARKKIVEDL 324 (877)
T ss_pred CCCCceEEECCCCeeccCCccccCC-CcHHHHHHHHHHHH
Confidence 4799999999999998 35556 44444444444433
No 324
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=29.99 E-value=81 Score=25.59 Aligned_cols=33 Identities=3% Similarity=-0.058 Sum_probs=25.5
Q ss_pred EEEcCCChhhHhhhHHHHHHHHHhcCcceEEEE
Q 024784 145 EFYADWCEVCRELAPDVYRVEQQYKDRVNFVML 177 (262)
Q Consensus 145 ~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V 177 (262)
+|+-.-||+|-...+.|.++.++++-.+.+.-+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 455677999999999999999988654554444
No 325
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=28.73 E-value=3.2e+02 Score=22.66 Aligned_cols=57 Identities=11% Similarity=0.032 Sum_probs=34.1
Q ss_pred CCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEE
Q 024784 139 GKPTVLEFYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFA 200 (262)
Q Consensus 139 ~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~v 200 (262)
+...+..|+.++|++|+...=.|.+. +-.+.++.++.+.. .+++.+..-...+|+++
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~----gl~~e~~~v~~~~~-~~~~~~~nP~g~VPvL~ 63 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEK----GVSVEIEQVEKDNL-PQDLIDLNPYQSVPTLV 63 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHC----CCCCEEEeCCcccC-CHHHHHhCCCCCCCEEE
Confidence 34444445567899999887555542 22256666665432 23555555566799985
No 326
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=28.45 E-value=3.1e+02 Score=21.94 Aligned_cols=95 Identities=16% Similarity=0.208 Sum_probs=44.9
Q ss_pred hHHHhc-CCCcEEEEEEcCCChhh-HhhhHHHHHHHHHhcCc-ceEEEEEccCCc-hHHHHHHcCC---CCccEEEEEcC
Q 024784 132 YEQALT-NGKPTVLEFYADWCEVC-RELAPDVYRVEQQYKDR-VNFVMLNVDNTK-WEQELDEFGV---EGIPHFAFLDR 204 (262)
Q Consensus 132 l~~~~~-~~k~vlV~F~a~wC~~C-~~~~p~L~~l~~~~~~~-v~~v~V~vD~~~-~~~l~~~~gi---~~~Pt~vliD~ 204 (262)
.++++. +...+||.+ .+-|+=- -...|-.....+. ..+ -+++.|=...+. -.+-++.|=. -+-|.+.+| +
T Consensus 27 Vd~~~~~~~GTtlVvV-NSVCGCAag~ARPa~~~al~~-~kkPD~lvTVFAGqDkEAt~~aR~yf~~~pPSSPS~ALf-K 103 (136)
T PF06491_consen 27 VDEALKNKEGTTLVVV-NSVCGCAAGNARPAAAMALQN-DKKPDHLVTVFAGQDKEATAKAREYFEPYPPSSPSIALF-K 103 (136)
T ss_dssp HHHHHHH--SEEEEEE-E-SSHHHHHTHHHHHHHHHHH-SS--SEEEEEETTTSHHHHHHHHHTSTTS---SSEEEEE-E
T ss_pred HHHHHhCCCCcEEEEE-eccccccccccCHHHHHHHhC-CCCCCceEEeccCCCHHHHHHHHHhcCCCCCCCchheee-e
Confidence 344444 344455544 5557622 2334555443332 222 345444433322 1233444422 257899999 9
Q ss_pred CCeEEEEEeC----CCCHHHHHHHHHHHh
Q 024784 205 EGNEEGNVVG----RLPRQYLLENVDALA 229 (262)
Q Consensus 205 ~Gkiv~~~~G----~~~~e~l~~~l~~l~ 229 (262)
||++++-+.. ..+.+.+.+.|....
T Consensus 104 dGelvh~ieRh~IEGr~a~~Ia~~L~~af 132 (136)
T PF06491_consen 104 DGELVHFIERHHIEGRPAEEIAENLQDAF 132 (136)
T ss_dssp TTEEEEEE-GGGTTTS-HHHHHHHHHHHH
T ss_pred CCEEEEEeehhhcCCCCHHHHHHHHHHHH
Confidence 9999985432 256666666666543
No 327
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=27.60 E-value=2.7e+02 Score=28.05 Aligned_cols=75 Identities=13% Similarity=0.219 Sum_probs=42.9
Q ss_pred HHHHHHHhcCc-ceEEEEEccCCchHHHHHHcCCCCccEEEEEcC----CCeEEEEEe-----CCCCHHHHHHHHHHHhC
Q 024784 161 VYRVEQQYKDR-VNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDR----EGNEEGNVV-----GRLPRQYLLENVDALAH 230 (262)
Q Consensus 161 L~~l~~~~~~~-v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~----~Gkiv~~~~-----G~~~~e~l~~~l~~l~~ 230 (262)
..++++.+... +.+ .+|........-.+.....++|..++++. +|.+.-+.. ..++.+++.+.|.++++
T Consensus 515 A~eIa~~Lr~~GirV-~lDdr~~slgkKir~A~~~GiP~iIVIG~kEle~g~VtVr~R~t~eq~~v~l~eli~~l~~~~~ 593 (613)
T PRK03991 515 AEEVADKLEAAGIRV-DVDDRDESLGKKIRDAGKEWIPYVVVIGDKEMESGKLTVTIREESEKVEMTLEELIERIKEETK 593 (613)
T ss_pred HHHHHHHHHhCCCEE-EEECCCCCHHHHHHHHHHcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHHHHh
Confidence 33445555433 222 23332233344455556778999999973 455533321 23457889999999988
Q ss_pred CCCCCC
Q 024784 231 GKASIP 236 (262)
Q Consensus 231 ~~~~~~ 236 (262)
+..-.|
T Consensus 594 ~~p~~~ 599 (613)
T PRK03991 594 GYPYRP 599 (613)
T ss_pred cCCCCC
Confidence 775443
No 328
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=27.04 E-value=1.9e+02 Score=21.13 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCeEEEE-EeCCCC-HHHHHHHHHHHhCCC
Q 024784 195 GIPHFAFLDREGNEEGN-VVGRLP-RQYLLENVDALAHGK 232 (262)
Q Consensus 195 ~~Pt~vliD~~Gkiv~~-~~G~~~-~e~l~~~l~~l~~~~ 232 (262)
.=|.++++|.+|+.+-. ..|... .++|...|.+++++.
T Consensus 37 ~DPaVvvvde~g~~vIplL~GH~GGan~lA~~iA~~lga~ 76 (84)
T PF11760_consen 37 TDPAVVVVDEDGRFVIPLLGGHRGGANELARQIAELLGAQ 76 (84)
T ss_dssp T--EEEEE-TT--EEEEEE-TTTT-HHHHHHHHHHHTT-E
T ss_pred CCCCEEEEeCCCCEEEEeccCCcchHHHHHHHHHHHhCCE
Confidence 46999999999998766 445555 799999999988765
No 329
>PRK13617 psbV cytochrome c-550; Provisional
Probab=26.10 E-value=39 Score=28.15 Aligned_cols=19 Identities=11% Similarity=-0.090 Sum_probs=13.7
Q ss_pred CCCCHHHHHHHHHHHhCCC
Q 024784 214 GRLPRQYLLENVDALAHGK 232 (262)
Q Consensus 214 G~~~~e~l~~~l~~l~~~~ 232 (262)
...+++++......++...
T Consensus 138 ~~LsdeeL~alAayLl~~~ 156 (170)
T PRK13617 138 RDLNDEDLRLMAGYILVAP 156 (170)
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 3478888888777776653
No 330
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=26.06 E-value=58 Score=30.18 Aligned_cols=50 Identities=14% Similarity=0.259 Sum_probs=28.8
Q ss_pred ceEEEEEccCCchHHHHHHcCCCCc--cEEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Q 024784 172 VNFVMLNVDNTKWEQELDEFGVEGI--PHFAFLDREGNEEGNVVGRLPRQYLLENVDA 227 (262)
Q Consensus 172 v~~v~V~vD~~~~~~l~~~~gi~~~--Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~ 227 (262)
+-+.+.-++... +.--.++||.+- -..++| ++|+++.++ +.+++.+.|.+
T Consensus 292 VAVMGCvVNGPG-Eak~ADiGIaggg~g~~~lF-~~G~~~~kv----~~~~~~~~l~~ 343 (346)
T TIGR00612 292 VAVMGCVVNGPG-EAKHADIGISGGGTGSAILF-KRGKPKAKQ----PETDMADELIR 343 (346)
T ss_pred EEEECceecCCc-hhhccCeeeecCCCCceEEE-ECCEEeEec----CHHHHHHHHHH
Confidence 444455566543 334456788753 345566 899997765 44555554443
No 331
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=25.93 E-value=72 Score=23.36 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=23.0
Q ss_pred EEcCC---Chhh--Hh---hhHHHHHHHHHhcCc-ceEEEEEcc
Q 024784 146 FYADW---CEVC--RE---LAPDVYRVEQQYKDR-VNFVMLNVD 180 (262)
Q Consensus 146 F~a~w---C~~C--~~---~~p~L~~l~~~~~~~-v~~v~V~vD 180 (262)
||..| |..| .. .+.+|++-.++|.+. |+++++|-.
T Consensus 28 ywt~w~lp~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~~ 71 (84)
T cd00307 28 FRTSSWQSCGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDPK 71 (84)
T ss_pred cHhhhcCCCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 45544 5666 43 445556666788877 888888765
No 332
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=25.63 E-value=1.2e+02 Score=21.72 Aligned_cols=30 Identities=7% Similarity=0.181 Sum_probs=23.3
Q ss_pred cEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHh
Q 024784 197 PHFAFLDREGNEEGNVVGRLPRQYLLENVDALA 229 (262)
Q Consensus 197 Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~ 229 (262)
.|+.+| +.|+++ ..|..+.+++.+.+++++
T Consensus 50 ~t~~IF-~sGki~--itGaks~~~~~~a~~~i~ 79 (86)
T PF00352_consen 50 ATVLIF-SSGKIV--ITGAKSEEEAKKAIEKIL 79 (86)
T ss_dssp EEEEEE-TTSEEE--EEEESSHHHHHHHHHHHH
T ss_pred EEEEEE-cCCEEE--EEecCCHHHHHHHHHHHH
Confidence 477777 999995 457788888888887765
No 333
>PRK12450 foldase protein PrsA; Reviewed
Probab=25.40 E-value=1e+02 Score=27.91 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhccCc-ccccccccccccchHH
Q 024784 92 NKEINRGIAVASTLAALGLFLFTRLDF-GVSLKDLSAAALPYEQ 134 (262)
Q Consensus 92 mk~~~~~l~lllll~~~~~~~~~~~~~-~~~l~~~~g~~~~l~~ 134 (262)
||+|+++++++++++++.+++.|.... +..+...+|..++..+
T Consensus 1 m~~~kk~i~~~~~~~~~~~l~gc~~~~~~~~VAtvng~~IT~~e 44 (309)
T PRK12450 1 MKQMNKLITGVVTLATVVTLSACQSSHNNTKLVSMKGDTITVSD 44 (309)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEECCeeecHHH
Confidence 667776666555544444444443221 1123444444444433
No 334
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=25.01 E-value=1.3e+02 Score=26.60 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=24.7
Q ss_pred cEEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Q 024784 197 PHFAFLDREGNEEGNVVGRLPRQYLLENVD 226 (262)
Q Consensus 197 Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~ 226 (262)
-.++++|+.|+|.+.-.|..+++++++...
T Consensus 249 GyV~L~D~s~kIRW~g~G~aTp~Eve~L~~ 278 (287)
T KOG4614|consen 249 GYVLLLDKSGKIRWQGFGTATPEEVEQLLS 278 (287)
T ss_pred EEEEEEccCceEEEeecCCCCHHHHHHHHH
Confidence 367889999999999999999887776554
No 335
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=24.86 E-value=5.9e+02 Score=23.95 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=60.4
Q ss_pred CCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc--ceEEEEEccCCch--HHHHHHcCCC-CccEEEEEcCCCeE-EEE-
Q 024784 139 GKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR--VNFVMLNVDNTKW--EQELDEFGVE-GIPHFAFLDREGNE-EGN- 211 (262)
Q Consensus 139 ~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~--v~~v~V~vD~~~~--~~l~~~~gi~-~~Pt~vliD~~Gki-v~~- 211 (262)
+...+|-|--.--|.-.++...|.++++.+.++ ..++-||-|..+. .-.-+.|+|. .-|.+=++|-.-.- ++-
T Consensus 268 ~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~~PqIGvVnvtdadsvW~d 347 (383)
T PF01216_consen 268 DGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLSRPQIGVVNVTDADSVWMD 347 (383)
T ss_dssp SSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TTS-EEEEEETTTSEEEEC-
T ss_pred CCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCccccCCceeEEeccccccchhc
Confidence 345566676666788899999999999988776 8889988887651 1222567775 35988888754332 321
Q ss_pred EeC---CCCHHHHHHHHHHHhCCCCCC
Q 024784 212 VVG---RLPRQYLLENVDALAHGKASI 235 (262)
Q Consensus 212 ~~G---~~~~e~l~~~l~~l~~~~~~~ 235 (262)
... ..+.++|+.||+.+++|+...
T Consensus 348 m~d~~d~pt~~~LedWieDVlsg~i~~ 374 (383)
T PF01216_consen 348 MDDDDDLPTAEELEDWIEDVLSGKINT 374 (383)
T ss_dssp STTTSS---HHHHHHHHHHHHCTCCTB
T ss_pred cCCcccCCcHHHHHHHHHHHhcCCCCC
Confidence 222 235789999999999998654
No 336
>PRK14443 acylphosphatase; Provisional
Probab=24.72 E-value=2.1e+02 Score=21.16 Aligned_cols=42 Identities=17% Similarity=0.342 Sum_probs=32.3
Q ss_pred HHHHHHcCCCCccEEEEEc-CCCeEEEEEeCCCCHHHHHHHHHHHhCCC
Q 024784 185 EQELDEFGVEGIPHFAFLD-REGNEEGNVVGRLPRQYLLENVDALAHGK 232 (262)
Q Consensus 185 ~~l~~~~gi~~~Pt~vliD-~~Gkiv~~~~G~~~~e~l~~~l~~l~~~~ 232 (262)
..++.++++.|+ +-| .+|.+.-...| +.+.++++++.+..+.
T Consensus 24 ~~~A~~~gl~G~----V~N~~dG~Vei~~qG--~~~~l~~f~~~l~~g~ 66 (93)
T PRK14443 24 KHVAYKYDISGT----VKNLDDGSVEIHAIA--EEENLNKFIDAIKKGP 66 (93)
T ss_pred HHHHHHcCCEEE----EEECCCCEEEEEEEC--CHHHHHHHHHHHhcCC
Confidence 477889999886 344 78888777777 6677888988888764
No 337
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=24.69 E-value=2.3e+02 Score=21.80 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=35.5
Q ss_pred ceEEEEEccC-CchHHHHHHcCCCCccEEEEEc------CCCeEEEEEeCCCCHHHHHHHH
Q 024784 172 VNFVMLNVDN-TKWEQELDEFGVEGIPHFAFLD------REGNEEGNVVGRLPRQYLLENV 225 (262)
Q Consensus 172 v~~v~V~vD~-~~~~~l~~~~gi~~~Pt~vliD------~~Gkiv~~~~G~~~~e~l~~~l 225 (262)
..-+.+.+++ .+..++.++....++|+.++.| +.|...-.-.|..+.+.+....
T Consensus 49 ~~KvVl~v~~~~~l~~l~~~a~~~gl~~~~v~DAG~Tqi~~gt~TvlaigP~~~~~i~~it 109 (115)
T cd02407 49 QKKVVLKVPSEEELLELAKKAKELGLPHSLIQDAGRTQIPPGTPTVLAIGPAPKEKVDKVT 109 (115)
T ss_pred CcEEEEECCCHHHHHHHHHHHHHcCCCeEEEEECCCcccCCCCceEEEECCCCHHHHHHHc
Confidence 4455556555 4566777777778899999998 4555555556767766555543
No 338
>PF09116 gp45-slide_C: gp45 sliding clamp, C terminal; InterPro: IPR015200 This domain is essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. It adopts a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry []. ; PDB: 1B8H_A 1B77_B 3U61_F 3U60_G 3U5Z_R 1CZD_B.
Probab=24.66 E-value=54 Score=25.39 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=25.7
Q ss_pred EccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEE
Q 024784 178 NVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNV 212 (262)
Q Consensus 178 ~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~ 212 (262)
++..++..++.+.-.+.++|++.++..+|+++.+.
T Consensus 5 ~L~~edl~ql~kas~~l~l~dl~~~~~~gkivv~~ 39 (112)
T PF09116_consen 5 ELKAEDLQQLMKASRTLGLPDLCFVNDDGKIVVTD 39 (112)
T ss_dssp EE-HHHHHHHHHHHHHCT--EEEEEEETTEEEEEE
T ss_pred EecHHHHHHHHHHHHhcCCCeEEEEecCCEEEEEc
Confidence 34445566888888888999999999999998775
No 339
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=24.06 E-value=1.3e+02 Score=24.28 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=26.3
Q ss_pred CccEEEEEcCCCeEEEEEe-CCCCHHHHHHHHHHHhC
Q 024784 195 GIPHFAFLDREGNEEGNVV-GRLPRQYLLENVDALAH 230 (262)
Q Consensus 195 ~~Pt~vliD~~Gkiv~~~~-G~~~~e~l~~~l~~l~~ 230 (262)
.-|.+.++|.+|++...+. -..+.|.++++++..++
T Consensus 116 ~~P~l~llDadgk~kE~lsI~kWntdtl~eff~ekle 152 (154)
T KOG3384|consen 116 SDPVLKLLDADGKHKESLSIDKWNTDTLEEFFREKLE 152 (154)
T ss_pred CCCeeEeecCCCCccceeeecccChHHHHHHHHHHhc
Confidence 4689999999999876532 34566888888876554
No 340
>PLN02734 glycyl-tRNA synthetase
Probab=23.66 E-value=4.3e+02 Score=27.08 Aligned_cols=77 Identities=13% Similarity=0.161 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEEEEEe--C---CCCHHHHHHHHHHHhCCC
Q 024784 158 APDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVV--G---RLPRQYLLENVDALAHGK 232 (262)
Q Consensus 158 ~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~--G---~~~~e~l~~~l~~l~~~~ 232 (262)
.+...++++.+...-.-+.+|........-.++....++|..+++|.+|.+.-+.. | .++.+++.+.|..++.+.
T Consensus 585 ~~~A~eLa~~LR~~GIrVelDd~~~SIGKRyrrADeiGIPf~ItIG~dgtVTIRdRdsgeQ~rV~ldeLv~~I~~li~~~ 664 (684)
T PLN02734 585 NAVAKVISKELTAAGISHKIDITGTSIGKRYARTDELGVPFAVTVDSDGSVTIRERDSKDQVRVPVEEVASVVKDLTDGR 664 (684)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCCHhHHHHHHHHcCCCEEEEECCCCeEEEEECCCCceEEeeHHHHHHHHHHHHcCC
Confidence 44555666666554122344443333344555556678999999988777754422 2 345788999999988876
Q ss_pred CC
Q 024784 233 AS 234 (262)
Q Consensus 233 ~~ 234 (262)
.+
T Consensus 665 ~~ 666 (684)
T PLN02734 665 MT 666 (684)
T ss_pred CC
Confidence 43
No 341
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=23.34 E-value=12 Score=28.35 Aligned_cols=73 Identities=11% Similarity=0.201 Sum_probs=41.0
Q ss_pred EEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCc-----hHHHHHHcCCCCccEEEEEcCCCeEEEEEe----CCC
Q 024784 146 FYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTK-----WEQELDEFGVEGIPHFAFLDREGNEEGNVV----GRL 216 (262)
Q Consensus 146 F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~-----~~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~----G~~ 216 (262)
|+-+.|..|++....|.+ .+ +.+..+|+-..+ ..++++.+|.. .--+++.+|+...... ...
T Consensus 1 Y~~~~C~t~rka~~~L~~----~g--i~~~~~d~~k~p~s~~el~~~l~~~~~~---~~~lin~~~~~~k~l~~~~~~~~ 71 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE----NG--IEYEFIDYKKEPLSREELRELLSKLGNG---PDDLINTRSKTYKELGKLKKDDL 71 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH----TT----EEEEETTTS---HHHHHHHHHHHTSS---GGGGB-TTSHHHHHTTHHHCTTS
T ss_pred CcCCCCHHHHHHHHHHHH----cC--CCeEeehhhhCCCCHHHHHHHHHHhccc---HHHHhcCccchHhhhhhhhhhhh
Confidence 567889999999877765 22 567778876532 34556666643 2224567776443332 345
Q ss_pred CHHHHHHHHHH
Q 024784 217 PRQYLLENVDA 227 (262)
Q Consensus 217 ~~e~l~~~l~~ 227 (262)
+.+++.+.|.+
T Consensus 72 s~~e~i~~l~~ 82 (110)
T PF03960_consen 72 SDEELIELLLE 82 (110)
T ss_dssp BHHHHHHHHHH
T ss_pred hhHHHHHHHHh
Confidence 66777666655
No 342
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=22.53 E-value=1.2e+02 Score=22.90 Aligned_cols=36 Identities=17% Similarity=0.469 Sum_probs=24.3
Q ss_pred EEcCC-Chh--hHhh---hHHHHHHHHHhcCc-ceEEEEEccC
Q 024784 146 FYADW-CEV--CREL---APDVYRVEQQYKDR-VNFVMLNVDN 181 (262)
Q Consensus 146 F~a~w-C~~--C~~~---~p~L~~l~~~~~~~-v~~v~V~vD~ 181 (262)
+|..| +|. |... +.+|++-.+++.+. |+++++|-..
T Consensus 45 yW~mwklP~f~~~d~~~Vl~ei~~C~~~~p~~YVRliG~D~~~ 87 (99)
T cd03527 45 YWTMWKLPMFGCTDPAQVLREIEACRKAYPDHYVRVVGFDNYK 87 (99)
T ss_pred EEeeccCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCCc
Confidence 57776 666 6654 45555556778777 8888888653
No 343
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=21.95 E-value=3.6e+02 Score=20.50 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=13.8
Q ss_pred HhhhHHHHHHHHHhcCc-ceEEEE
Q 024784 155 RELAPDVYRVEQQYKDR-VNFVML 177 (262)
Q Consensus 155 ~~~~p~L~~l~~~~~~~-v~~v~V 177 (262)
......|.+-+++-+.. ++++..
T Consensus 63 ~d~~~~La~KAda~GA~yYrIi~~ 86 (104)
T PRK14864 63 DDAEREIQAKANAAGADYYVIVMV 86 (104)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEc
Confidence 44555666666666665 566555
No 344
>PRK10387 glutaredoxin 2; Provisional
Probab=21.08 E-value=3.8e+02 Score=21.90 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=30.0
Q ss_pred EEcCCChhhHhhhHHHHHHHHHhcCcceEEEEEccCCchHHHHHHcCCCCccEEEEEcCCCeEE
Q 024784 146 FYADWCEVCRELAPDVYRVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEE 209 (262)
Q Consensus 146 F~a~wC~~C~~~~p~L~~l~~~~~~~v~~v~V~vD~~~~~~l~~~~gi~~~Pt~vliD~~Gkiv 209 (262)
++...||+|.+..=.+... +-.+.++.++.+. .....+..+...+|+++. .+|..+
T Consensus 4 y~~~~sp~~~kv~~~L~~~----gi~y~~~~~~~~~--~~~~~~~~p~~~VPvL~~--~~g~~l 59 (210)
T PRK10387 4 YIYDHCPFCVKARMIFGLK----NIPVELIVLANDD--EATPIRMIGQKQVPILQK--DDGSYM 59 (210)
T ss_pred EeCCCCchHHHHHHHHHHc----CCCeEEEEcCCCc--hhhHHHhcCCcccceEEe--cCCeEe
Confidence 4567799999877554432 2124444443332 222234445567998854 256543
No 345
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.88 E-value=4.2e+02 Score=23.96 Aligned_cols=67 Identities=19% Similarity=0.319 Sum_probs=48.7
Q ss_pred hHHHHHHHHHh----c----CcceEEEEEccCCchHHHHHHcCCC-CccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHH
Q 024784 158 APDVYRVEQQY----K----DRVNFVMLNVDNTKWEQELDEFGVE-GIPHFAFLDREGNEEGNVVGRLPRQYLLENVDAL 228 (262)
Q Consensus 158 ~p~L~~l~~~~----~----~~v~~v~V~vD~~~~~~l~~~~gi~-~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l 228 (262)
.|++.++.++. . ..+.+|.+|+..++|.+.+...|.. .-||+++. +|-+ .+.+++...+++..+
T Consensus 123 ~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~ia--EGLl-----~YL~~~~v~~ll~~I 195 (297)
T COG3315 123 LPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRPTLWIA--EGLL-----MYLPEEAVDRLLSRI 195 (297)
T ss_pred CcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCCeEEEe--cccc-----ccCCHHHHHHHHHHH
Confidence 47777665442 2 2478888899988888888888864 68999885 7754 357888888888877
Q ss_pred hCC
Q 024784 229 AHG 231 (262)
Q Consensus 229 ~~~ 231 (262)
.+.
T Consensus 196 ~~~ 198 (297)
T COG3315 196 AAL 198 (297)
T ss_pred HHh
Confidence 654
No 346
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=20.87 E-value=23 Score=32.94 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=37.7
Q ss_pred ChhhHhhhHHHHHHHHH----hcC---cceEE--EEEccCCchHHHHHHcCCC-CccE-EEEEcCCCeEEEEE-eCCCCH
Q 024784 151 CEVCRELAPDVYRVEQQ----YKD---RVNFV--MLNVDNTKWEQELDEFGVE-GIPH-FAFLDREGNEEGNV-VGRLPR 218 (262)
Q Consensus 151 C~~C~~~~p~L~~l~~~----~~~---~v~~v--~V~vD~~~~~~l~~~~gi~-~~Pt-~vliD~~Gkiv~~~-~G~~~~ 218 (262)
||.|-...=.++++.++ +.+ .+.+. +.-++... +.--.+||+. +-+- .++| ++|+++.+. ....-.
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPG-Ea~~AD~GiaGgg~g~~~lf-~~g~~v~k~~~ee~~v 348 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPG-EAKDADIGIAGGGKGKGILF-KKGEVVKKVIPEEEIV 348 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHH-HCTTSSEEEE-E-TTCEEEE-CTTEEEEEE-CSTCHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCc-hhhhCceeeecCCCCeEEEE-ECCEEEEecCCHHHHH
Confidence 88886655555554433 322 22332 22333332 2223467877 4444 5566 999999997 665556
Q ss_pred HHHHHHHHHH
Q 024784 219 QYLLENVDAL 228 (262)
Q Consensus 219 e~l~~~l~~l 228 (262)
++|.+.|++.
T Consensus 349 d~L~~~I~~~ 358 (359)
T PF04551_consen 349 DELIELIEEH 358 (359)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 7777766654
No 347
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=20.86 E-value=2.6e+02 Score=19.71 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=35.7
Q ss_pred HhcCCCcEEEEEEcCCChhhHhhhHHHHHHHHHhcCc----ceEEEEEccCCchHHHHHHcCCC
Q 024784 135 ALTNGKPTVLEFYADWCEVCRELAPDVYRVEQQYKDR----VNFVMLNVDNTKWEQELDEFGVE 194 (262)
Q Consensus 135 ~~~~~k~vlV~F~a~wC~~C~~~~p~L~~l~~~~~~~----v~~v~V~vD~~~~~~l~~~~gi~ 194 (262)
...+|+.+++..-++=-..=......-.+++++..+. +-++...+|.. ..+.++++||.
T Consensus 8 vikdg~~ilvEikSs~~~~Dv~~f~rk~~lYek~~grk~~r~ivVtp~id~~-a~~~A~~LGIe 70 (70)
T PF07788_consen 8 VIKDGKVILVEIKSSVSRGDVYIFKRKAELYEKVHGRKVDRLIVVTPYIDDR-AKEMAEELGIE 70 (70)
T ss_pred EEECCeEEEEEEEccCCHHHHHHHHHHHHHHHHHHCCCcceEEEEEeecCHH-HHHHHHHhCCC
Confidence 3467888899888764433333333333466665442 45555566665 46788888874
No 348
>PRK14426 acylphosphatase; Provisional
Probab=20.86 E-value=2.7e+02 Score=20.39 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=31.4
Q ss_pred HHHHHHcCCCCccEEEEEc-CCCeEEEEEeCCCCHHHHHHHHHHHhCCC
Q 024784 185 EQELDEFGVEGIPHFAFLD-REGNEEGNVVGRLPRQYLLENVDALAHGK 232 (262)
Q Consensus 185 ~~l~~~~gi~~~Pt~vliD-~~Gkiv~~~~G~~~~e~l~~~l~~l~~~~ 232 (262)
..++.++|+.++ +-| .+|.+.-...| +.+.++++++.+..+.
T Consensus 24 ~~~A~~~gl~G~----V~N~~dG~Vei~~~G--~~~~i~~f~~~l~~g~ 66 (92)
T PRK14426 24 QHEALKLGLTGY----AKNLDDGSVEVVACG--EEEQVEKLMEWLKEGG 66 (92)
T ss_pred HHHHHHhCCEEE----EEECCCCcEEEEEEe--CHHHHHHHHHHHhcCC
Confidence 477889999987 333 78877666777 6777888888887753
No 349
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=20.81 E-value=2.1e+02 Score=20.65 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=32.2
Q ss_pred HHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHhCCC
Q 024784 185 EQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVDALAHGK 232 (262)
Q Consensus 185 ~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~~~~ 232 (262)
..++.++|+.|+ +-=..+|.+.....| +.+.++++++.+..+.
T Consensus 24 ~~~A~~~gl~G~---V~N~~dg~V~i~~~G--~~~~l~~f~~~l~~g~ 66 (91)
T PF00708_consen 24 KRIARKLGLTGW---VRNLPDGSVEIEAEG--EEEQLEEFIKWLKKGP 66 (91)
T ss_dssp HHHHHHTT-EEE---EEE-TTSEEEEEEEE--EHHHHHHHHHHHHHSS
T ss_pred HHHHHHhCCceE---EEECCCCEEEEEEEe--CHHHHHHHHHHHHhCC
Confidence 477889999987 333478878777878 7788999998888865
No 350
>PRK14420 acylphosphatase; Provisional
Probab=20.49 E-value=2.8e+02 Score=20.14 Aligned_cols=42 Identities=26% Similarity=0.319 Sum_probs=31.9
Q ss_pred HHHHHHcCCCCccEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHhCC
Q 024784 185 EQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVDALAHG 231 (262)
Q Consensus 185 ~~l~~~~gi~~~Pt~vliD~~Gkiv~~~~G~~~~e~l~~~l~~l~~~ 231 (262)
..++.++++.++ +-=+.+|.+.-...| +.+.++++++.+.++
T Consensus 22 ~~~A~~~gl~G~---V~N~~dG~Vei~~qG--~~~~i~~f~~~l~~~ 63 (91)
T PRK14420 22 QMEADKRKLTGW---VKNRDDGTVEIEAEG--PEEALQLFLDAIEKG 63 (91)
T ss_pred HHHHHHcCCEEE---EEECCCCcEEEEEEE--CHHHHHHHHHHHHhC
Confidence 367888999887 333467877777777 568899999998876
No 351
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.48 E-value=4.1e+02 Score=22.05 Aligned_cols=52 Identities=15% Similarity=0.383 Sum_probs=31.8
Q ss_pred ccchHHHhcCCCcEEEEEE--cCCChhh-HhhhHHHHHHHHHhcCc--ceEEEEEccCC
Q 024784 129 ALPYEQALTNGKPTVLEFY--ADWCEVC-RELAPDVYRVEQQYKDR--VNFVMLNVDNT 182 (262)
Q Consensus 129 ~~~l~~~~~~~k~vlV~F~--a~wC~~C-~~~~p~L~~l~~~~~~~--v~~v~V~vD~~ 182 (262)
.+++.++. +||.++| |. +.+-|.| +.-.|-+-+-+++++.+ -.++.+.+|+.
T Consensus 34 tv~~~~l~-~GKKvIi-fGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVnDp 90 (171)
T KOG0541|consen 34 TVNVSSLF-KGKKVIL-FGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVNDP 90 (171)
T ss_pred eEEhHHhc-CCceEEE-EcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecCcH
Confidence 55666655 4554444 44 4556774 55567776666766655 46777788764
No 352
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=20.14 E-value=3.2e+02 Score=22.61 Aligned_cols=26 Identities=15% Similarity=0.034 Sum_probs=12.2
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHH
Q 024784 87 FIEFPNKEINRGIAVASTLAALGLFL 112 (262)
Q Consensus 87 ~~~~pmk~~~~~l~lllll~~~~~~~ 112 (262)
.+..+|-+....+++.+..+++.+|.
T Consensus 88 ~~d~~~l~R~~~Vl~g~s~l~i~yfv 113 (163)
T PF06679_consen 88 SPDSPMLKRALYVLVGLSALAILYFV 113 (163)
T ss_pred cCCccchhhhHHHHHHHHHHHHHHHH
Confidence 44566644444444444444444444
Done!