Query 024785
Match_columns 262
No_of_seqs 208 out of 1253
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:24:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2332 Ferritin [Inorganic io 100.0 6.7E-49 1.5E-53 336.5 14.3 172 81-256 3-177 (178)
2 PRK15022 ferritin-like protein 100.0 5.4E-47 1.2E-51 323.9 20.3 161 91-259 2-163 (167)
3 PRK10304 ferritin; Provisional 100.0 2.8E-44 6E-49 306.8 20.4 161 90-258 1-162 (165)
4 cd00904 Ferritin Ferritin iron 100.0 2.7E-44 5.9E-49 304.5 18.7 156 92-252 1-160 (160)
5 COG1528 Ftn Ferritin-like prot 100.0 6.6E-43 1.4E-47 296.4 19.8 160 91-258 2-162 (167)
6 cd01056 Euk_Ferritin eukaryoti 100.0 1.3E-41 2.8E-46 287.8 19.2 156 92-253 1-161 (161)
7 cd01055 Nonheme_Ferritin nonhe 100.0 1.9E-37 4.1E-42 259.2 20.0 155 92-254 1-156 (156)
8 PRK10635 bacterioferritin; Pro 100.0 9.6E-28 2.1E-32 203.7 19.3 143 91-242 3-145 (158)
9 TIGR00754 bfr bacterioferritin 100.0 6.2E-27 1.4E-31 197.0 19.2 142 92-242 4-145 (157)
10 PF00210 Ferritin: Ferritin-li 99.9 3.1E-25 6.6E-30 179.0 17.2 137 96-241 1-142 (142)
11 cd00907 Bacterioferritin Bacte 99.9 1.2E-24 2.6E-29 180.6 19.3 143 92-243 3-145 (153)
12 cd01041 Rubrerythrin Rubreryth 99.9 2.8E-22 6.1E-27 164.6 16.2 131 95-238 2-133 (134)
13 cd01052 DPSL DPS-like protein, 99.9 2.5E-21 5.4E-26 159.9 17.5 138 92-235 4-148 (148)
14 COG2193 Bfr Bacterioferritin ( 99.8 7E-20 1.5E-24 152.7 17.4 143 91-242 3-145 (157)
15 cd01046 Rubrerythrin_like rubr 99.8 1.5E-18 3.3E-23 141.2 15.9 121 95-238 2-122 (123)
16 PRK13456 DNA protection protei 99.7 8.7E-15 1.9E-19 126.9 17.6 141 92-236 18-163 (186)
17 cd01043 DPS DPS protein, ferri 99.3 7.9E-11 1.7E-15 96.7 14.5 129 98-234 2-138 (139)
18 cd00657 Ferritin_like Ferritin 99.3 1.8E-10 4E-15 88.2 15.0 123 98-234 2-129 (130)
19 cd07908 Mn_catalase_like Manga 99.3 6.4E-10 1.4E-14 93.1 17.4 137 92-235 11-154 (154)
20 cd01045 Ferritin_like_AB Uncha 98.9 2.4E-08 5.2E-13 79.6 13.4 129 97-234 1-138 (139)
21 cd01051 Mn_catalase Manganese 98.9 1.1E-07 2.3E-12 80.9 17.4 135 92-238 18-155 (156)
22 PF02915 Rubrerythrin: Rubrery 98.7 4.7E-07 1E-11 72.2 14.1 129 97-234 1-136 (137)
23 COG2406 Protein distantly rela 98.6 4.3E-06 9.2E-11 70.4 16.5 141 92-236 15-160 (172)
24 PRK09448 DNA starvation/statio 98.5 1.3E-05 2.9E-10 68.4 17.1 132 92-235 20-160 (162)
25 cd01044 Ferritin_CCC1_N Ferrit 98.3 9.4E-06 2E-10 65.8 11.3 121 98-236 2-124 (125)
26 COG1633 Uncharacterized conser 98.3 8.2E-05 1.8E-09 64.5 17.6 140 92-242 22-173 (176)
27 COG0783 Dps DNA-binding ferrit 98.1 0.00031 6.8E-09 59.9 16.6 132 93-233 14-153 (156)
28 PRK12775 putative trifunctiona 97.9 0.00056 1.2E-08 73.2 18.1 139 93-241 859-1001(1006)
29 PF13668 Ferritin_2: Ferritin- 97.8 0.0028 6E-08 51.7 16.5 131 96-236 3-136 (137)
30 COG1592 Rubrerythrin [Energy p 97.7 0.0017 3.7E-08 55.9 14.0 126 94-239 4-130 (166)
31 cd01042 DMQH Demethoxyubiquino 97.2 0.015 3.3E-07 50.1 13.7 122 104-232 10-135 (165)
32 cd01050 Acyl_ACP_Desat Acyl AC 96.7 0.2 4.3E-06 47.0 17.5 149 90-242 55-209 (297)
33 TIGR02284 conserved hypothetic 96.4 0.14 3.1E-06 42.5 13.4 112 96-217 2-122 (139)
34 cd01048 Ferritin_like_AB2 Unch 96.3 0.34 7.4E-06 39.9 14.9 121 97-231 3-131 (135)
35 PF03232 COQ7: Ubiquinone bios 96.1 0.33 7.2E-06 42.0 14.4 125 102-232 10-141 (172)
36 PF03405 FA_desaturase_2: Fatt 96.0 0.72 1.6E-05 43.9 17.4 148 89-238 56-211 (330)
37 PF09537 DUF2383: Domain of un 95.1 0.21 4.5E-06 39.2 8.8 64 94-162 1-64 (111)
38 PF04305 DUF455: Protein of un 92.6 2.4 5.3E-05 38.9 12.1 143 93-240 65-210 (253)
39 PF05974 DUF892: Domain of unk 92.5 5.9 0.00013 33.5 16.3 137 93-237 4-152 (159)
40 PF05067 Mn_catalase: Manganes 92.0 3.2 6.9E-05 38.8 12.2 143 92-242 18-198 (283)
41 COG1633 Uncharacterized conser 91.2 1.4 3.1E-05 38.2 8.5 61 177-241 23-83 (176)
42 cd01052 DPSL DPS-like protein, 89.7 3 6.5E-05 33.9 8.9 62 178-240 6-67 (148)
43 PF02915 Rubrerythrin: Rubrery 89.4 2.1 4.6E-05 33.5 7.6 56 181-238 1-56 (137)
44 cd07910 MiaE MiaE tRNA-modifyi 89.2 15 0.00032 32.3 16.9 131 94-242 18-159 (180)
45 COG2941 CAT5 Ubiquinone biosyn 88.5 17 0.00037 32.2 13.9 116 104-231 51-174 (204)
46 COG3546 Mn-containing catalase 88.4 9.2 0.0002 35.5 11.7 142 92-242 18-193 (277)
47 cd00907 Bacterioferritin Bacte 88.3 3.9 8.5E-05 33.3 8.7 61 178-239 5-65 (153)
48 PF00210 Ferritin: Ferritin-li 88.0 3.6 7.8E-05 32.4 8.1 58 181-239 2-59 (142)
49 cd01045 Ferritin_like_AB Uncha 88.0 2.8 6.2E-05 32.7 7.4 54 182-239 2-55 (139)
50 PF12902 Ferritin-like: Ferrit 87.2 3.3 7.2E-05 37.3 8.1 62 99-162 1-62 (227)
51 cd01041 Rubrerythrin Rubreryth 86.3 7.4 0.00016 31.5 9.1 60 93-154 72-132 (134)
52 cd01046 Rubrerythrin_like rubr 84.4 7.6 0.00016 31.3 8.2 59 179-238 2-60 (123)
53 PLN00179 acyl- [acyl-carrier p 82.7 9.4 0.0002 37.2 9.3 145 91-239 115-269 (390)
54 cd00657 Ferritin_like Ferritin 79.8 14 0.0003 27.2 7.8 53 182-238 2-54 (130)
55 cd07908 Mn_catalase_like Manga 79.7 10 0.00022 31.3 7.5 55 92-151 99-153 (154)
56 PF09537 DUF2383: Domain of un 77.8 19 0.00041 27.9 8.2 57 179-239 2-58 (111)
57 cd01055 Nonheme_Ferritin nonhe 77.1 14 0.0003 30.4 7.6 60 93-154 79-138 (156)
58 PF13668 Ferritin_2: Ferritin- 74.4 18 0.00038 29.1 7.4 56 180-236 3-63 (137)
59 cd07647 F-BAR_PSTPIP The F-BAR 70.7 44 0.00095 29.9 9.7 29 126-154 20-48 (239)
60 cd07909 YciF YciF bacterial st 69.0 69 0.0015 27.0 15.6 128 96-232 5-144 (147)
61 PRK12775 putative trifunctiona 66.5 24 0.00052 38.4 8.3 57 177-237 859-915 (1006)
62 PF07875 Coat_F: Coat F domain 64.7 47 0.001 23.5 8.5 55 98-157 5-59 (64)
63 cd07648 F-BAR_FCHO The F-BAR ( 63.9 85 0.0019 28.2 10.3 32 126-157 20-51 (261)
64 cd07673 F-BAR_FCHO2 The F-BAR 63.3 1.1E+02 0.0024 28.0 11.0 31 127-157 28-58 (269)
65 PF14530 DUF4439: Domain of un 60.9 94 0.002 25.6 15.8 118 98-230 1-119 (131)
66 cd07649 F-BAR_GAS7 The F-BAR ( 58.1 1.4E+02 0.0031 26.8 11.6 95 126-241 20-115 (233)
67 cd07651 F-BAR_PombeCdc15_like 57.0 1.4E+02 0.0031 26.4 11.4 32 126-157 20-51 (236)
68 cd01051 Mn_catalase Manganese 56.2 93 0.002 26.3 8.5 60 91-155 96-155 (156)
69 PRK10635 bacterioferritin; Pro 56.0 1.1E+02 0.0023 25.9 8.9 61 91-153 79-139 (158)
70 cd07674 F-BAR_FCHO1 The F-BAR 55.8 1.3E+02 0.0029 27.2 10.1 27 127-153 21-47 (261)
71 cd01056 Euk_Ferritin eukaryoti 54.5 1E+02 0.0022 25.6 8.5 60 178-238 3-64 (161)
72 KOG4061 DMQ mono-oxygenase/Ubi 52.6 1.4E+02 0.003 26.5 9.0 117 104-230 58-184 (217)
73 cd01048 Ferritin_like_AB2 Unch 52.1 61 0.0013 26.5 6.6 53 180-239 2-54 (135)
74 PRK10304 ferritin; Provisional 51.4 1.3E+02 0.0029 25.5 8.8 60 178-238 5-64 (165)
75 PF05974 DUF892: Domain of unk 47.3 1.5E+02 0.0032 24.9 8.4 56 180-239 7-62 (159)
76 cd07658 F-BAR_NOSTRIN The F-BA 47.2 1.9E+02 0.0041 26.0 9.5 95 126-238 20-114 (239)
77 PF06175 MiaE: tRNA-(MS[2]IO[6 45.5 2.5E+02 0.0053 25.8 15.9 136 92-242 25-210 (240)
78 cd07610 FCH_F-BAR The Extended 43.9 1.9E+02 0.0041 24.1 11.0 34 126-159 15-48 (191)
79 cd01058 AAMH_B Aromatic and Al 42.9 2.9E+02 0.0062 25.9 14.8 141 91-238 93-254 (304)
80 cd07909 YciF YciF bacterial st 39.4 2.3E+02 0.005 23.8 8.5 55 180-238 5-59 (147)
81 cd01044 Ferritin_CCC1_N Ferrit 39.1 1.9E+02 0.0041 22.9 7.5 52 183-238 3-54 (125)
82 PF02332 Phenol_Hydrox: Methan 39.1 2.8E+02 0.0061 24.7 13.4 136 96-238 76-227 (233)
83 cd07653 F-BAR_CIP4-like The F- 37.5 2.9E+02 0.0063 24.4 12.4 34 126-159 20-53 (251)
84 cd07655 F-BAR_PACSIN The F-BAR 37.4 3.1E+02 0.0068 24.8 10.9 34 126-159 20-53 (258)
85 PF07875 Coat_F: Coat F domain 37.4 1.5E+02 0.0032 20.9 8.7 53 180-236 3-55 (64)
86 TIGR02284 conserved hypothetic 35.9 1.7E+02 0.0037 24.0 6.9 36 203-239 22-57 (139)
87 PRK13456 DNA protection protei 35.8 2.7E+02 0.0058 24.6 8.3 61 177-238 19-79 (186)
88 PF11583 AurF: P-aminobenzoate 35.4 3.5E+02 0.0076 24.7 11.1 106 128-238 112-227 (304)
89 COG1592 Rubrerythrin [Energy p 35.3 2.2E+02 0.0047 24.7 7.6 60 178-238 4-63 (166)
90 TIGR00754 bfr bacterioferritin 34.9 2.6E+02 0.0056 23.0 9.1 60 92-153 80-139 (157)
91 cd07671 F-BAR_PSTPIP1 The F-BA 33.9 3.6E+02 0.0078 24.4 11.3 91 127-239 21-112 (242)
92 PF11860 DUF3380: Protein of u 33.3 86 0.0019 27.3 4.9 59 96-156 77-135 (175)
93 smart00055 FCH Fes/CIP4 homolo 31.8 2E+02 0.0044 20.9 7.2 28 127-154 25-52 (87)
94 PF03232 COQ7: Ubiquinone bios 31.7 3E+02 0.0066 23.7 8.0 56 181-239 5-60 (172)
95 COG2833 Uncharacterized protei 30.7 4.4E+02 0.0095 24.4 12.7 122 92-229 73-207 (268)
96 PRK09448 DNA starvation/statio 30.7 2.5E+02 0.0054 23.7 7.2 61 178-242 22-82 (162)
97 cd07652 F-BAR_Rgd1 The F-BAR ( 30.6 3.9E+02 0.0086 23.8 10.4 33 127-159 21-53 (234)
98 PF00611 FCH: Fes/CIP4, and EF 26.1 1.4E+02 0.003 21.7 4.4 31 126-156 24-54 (91)
99 KOG2225 Proteins containing re 24.8 7.5E+02 0.016 25.2 10.2 114 126-241 491-609 (695)
100 cd07672 F-BAR_PSTPIP2 The F-BA 24.6 5.2E+02 0.011 23.3 12.9 92 126-238 20-112 (240)
101 cd00904 Ferritin Ferritin iron 24.4 4.1E+02 0.0089 22.0 8.8 60 178-238 3-64 (160)
102 PRK13966 nrdF2 ribonucleotide- 24.2 3.2E+02 0.007 25.7 7.4 73 118-199 175-247 (324)
103 cd01043 DPS DPS protein, ferri 24.2 1.4E+02 0.003 23.9 4.3 56 182-238 2-57 (139)
104 cd07625 BAR_Vps17p The Bin/Amp 24.1 5.2E+02 0.011 23.4 8.4 61 178-239 161-228 (230)
105 cd01042 DMQH Demethoxyubiquino 24.0 1.3E+02 0.0027 25.9 4.2 31 207-238 26-56 (165)
106 PF10097 DUF2335: Predicted me 23.4 1.7E+02 0.0037 20.1 4.0 29 126-154 12-40 (50)
107 PLN02492 ribonucleoside-diphos 23.0 3.1E+02 0.0068 25.6 7.1 61 119-198 175-238 (324)
108 PRK13184 pknD serine/threonine 21.2 1.1E+03 0.024 25.9 13.1 118 69-212 570-690 (932)
109 PRK13654 magnesium-protoporphy 21.1 7.7E+02 0.017 23.9 9.9 120 94-220 83-205 (355)
110 PF07304 SRA1: Steroid recepto 21.0 1.3E+02 0.0029 25.4 3.8 45 193-241 90-134 (157)
111 PF12069 DUF3549: Protein of u 20.8 1.7E+02 0.0037 28.2 4.8 94 94-209 127-229 (340)
112 PF03979 Sigma70_r1_1: Sigma-7 20.7 1.4E+02 0.003 22.3 3.4 51 190-242 2-52 (82)
No 1
>KOG2332 consensus Ferritin [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-49 Score=336.47 Aligned_cols=172 Identities=54% Similarity=0.822 Sum_probs=165.8
Q ss_pred CccchhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee
Q 024785 81 VPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK 160 (262)
Q Consensus 81 ~~~~s~~rq~~s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~ 160 (262)
....+++|++++++|+.+||.|||.|+++||+|++|++||+|++++++||++||.++|+|||+||++||+|+|+|||+|+
T Consensus 3 ~~~~~~~r~~~~~~~~~~in~~in~el~~sy~Ylsma~yf~rd~v~l~g~~~ff~~~s~eereha~klm~~~n~rgg~i~ 82 (178)
T KOG2332|consen 3 TKMSSEARQNYHDEAEAAINSQINLELNASYVYLSMAAYFDRDDVALKGFAKFFLKQSQEEREHAEKLMKTQNMRGGRIE 82 (178)
T ss_pred ccchHHHhhcchhhccchhhhhccchhccchhhhhhhhccCccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHhCCccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 024785 161 LQSILMPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRR 240 (262)
Q Consensus 161 l~~I~~P~~~f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr 240 (262)
+++|.+|.. .+|++.++||+.||.+||.++++|.+||.+|.+.+|++++||||++||.|||+.|++|+++++++++
T Consensus 83 l~~i~~P~~----~ew~~~l~ale~al~LEk~vn~sLl~Lh~lA~~knD~hL~dflE~~fL~eQVksIkeL~~~~~~l~k 158 (178)
T KOG2332|consen 83 LQDIKKPEL----DEWGKGLEALEAALHLEKNVNQSLLELHSLATKKNDPHLCDFLESHFLNEQVKSIKELSDYLANLKK 158 (178)
T ss_pred ccccccccc----chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhhhHHHHHHHHHHHHHHHhHHh
Confidence 999999953 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC---CCchhhhhcHHhhc
Q 024785 241 VG---QGHGVWHFDQMLLH 256 (262)
Q Consensus 241 ~g---~g~g~~lfD~~L~~ 256 (262)
+| .|+|+|+||+++.+
T Consensus 159 ~~~~~~g~~~~lfd~~~~~ 177 (178)
T KOG2332|consen 159 MGAPDGGLGEYLFDKYLLS 177 (178)
T ss_pred ccCCCCchhhhhhhhhhcc
Confidence 99 58999999999875
No 2
>PRK15022 ferritin-like protein; Provisional
Probab=100.00 E-value=5.4e-47 Score=323.86 Aligned_cols=161 Identities=18% Similarity=0.221 Sum_probs=153.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcc
Q 024785 91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSE 170 (262)
Q Consensus 91 ~s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~ 170 (262)
.+++++.+||+|||.|++|||+|++||+||++ .+|||||+||+.+|+|||+||+||++|+++|||+|.+++|++|+.+
T Consensus 2 ~~~~~~~~LN~QIn~E~~aSy~YLsMa~~~~~--~~L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~~I~~P~~~ 79 (167)
T PRK15022 2 ATAGMLLKLNSQMNLEFYASNLYLHLSEWCSE--QSLNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVKAIDVPGEK 79 (167)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeCCCCCCccc
Confidence 57899999999999999999999999999986 6899999999999999999999999999999999999999999865
Q ss_pred CCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcC-CCchhhh
Q 024785 171 FDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVG-QGHGVWH 249 (262)
Q Consensus 171 f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr~g-~g~g~~l 249 (262)
|++++++|+.+|+|||.||+.|++|+++|.+++|++|++||+ ||+.||+++++.++++++.++++| +|.|+|+
T Consensus 80 -----~~s~~e~fe~al~hEk~vt~~I~~L~~~A~~~~D~~t~~FL~-wfv~EQ~eEe~~~~~ild~l~~~~~~g~g~~~ 153 (167)
T PRK15022 80 -----LNSLEELFQKTLEEYEQRSSTLAQLADEAKALNDDSTLNFLR-DLEKEQQHDGLLLQTILDEVRSAKLAGLCPVQ 153 (167)
T ss_pred -----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCcchhH
Confidence 458999999999999999999999999999999999999999 999999999999999999999998 4899999
Q ss_pred hcHHhhcCCC
Q 024785 250 FDQMLLHGEE 259 (262)
Q Consensus 250 fD~~L~~~~~ 259 (262)
||++++....
T Consensus 154 ~D~~~~~~~~ 163 (167)
T PRK15022 154 TDQHLLNVVS 163 (167)
T ss_pred hhHHHHHhhc
Confidence 9999987643
No 3
>PRK10304 ferritin; Provisional
Probab=100.00 E-value=2.8e-44 Score=306.77 Aligned_cols=161 Identities=25% Similarity=0.423 Sum_probs=153.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCc
Q 024785 90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS 169 (262)
Q Consensus 90 ~~s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~ 169 (262)
+++++++.+||+|||.|++|+|+|++|++||+. +||+|||+||+.+|.|||+||++|++|+++|||+|.+++|+.|..
T Consensus 1 ~~~~~i~~~Ln~qin~El~As~~Yl~ma~~~~~--~gl~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~ 78 (165)
T PRK10304 1 MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCSY--HTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFA 78 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCcc
Confidence 368999999999999999999999999999996 799999999999999999999999999999999999999998876
Q ss_pred cCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcCC-Cchhh
Q 024785 170 EFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQ-GHGVW 248 (262)
Q Consensus 170 ~f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr~g~-g~g~~ 248 (262)
+| .++.++|+.+|++|+.+++.|++|+++|.+.+|+.|++||+ |||+||||+++.+++++++++++|+ |.|.|
T Consensus 79 ~~-----~s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~fl~-~fl~EQveEe~~~~~l~~~l~~~~~~g~~~y 152 (165)
T PRK10304 79 EY-----SSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQ-WYVSEQHEEEKLFKSIIDKLSLAGKSGEGLY 152 (165)
T ss_pred cc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCcchHH
Confidence 54 58899999999999999999999999999999999999999 9999999999999999999999995 89999
Q ss_pred hhcHHhhcCC
Q 024785 249 HFDQMLLHGE 258 (262)
Q Consensus 249 lfD~~L~~~~ 258 (262)
+||+++...+
T Consensus 153 ~~D~~l~~~~ 162 (165)
T PRK10304 153 FIDKELSTLD 162 (165)
T ss_pred HHhHHHHHhh
Confidence 9999997654
No 4
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=100.00 E-value=2.7e-44 Score=304.47 Aligned_cols=156 Identities=51% Similarity=0.843 Sum_probs=149.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccC
Q 024785 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF 171 (262)
Q Consensus 92 s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f 171 (262)
+++|+.+||+|||.|+++||+|++||+||++++|+|||||+||+.+|+|||+||++|++||++|||+|+++.|++|..
T Consensus 1 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~~-- 78 (160)
T cd00904 1 SEKVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPPS-- 78 (160)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCcc--
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHhhcC-C--Cchh
Q 024785 172 DHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESK-YLHEQVEAIKKISEYVAQLRRVG-Q--GHGV 247 (262)
Q Consensus 172 ~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~-fL~EQve~ik~l~~~l~~Lrr~g-~--g~g~ 247 (262)
.+|++++++|+.+|++|+.+++.|++|+++|.+++|+.|++||+ | ||+||+++++++++++++++++| + +.|+
T Consensus 79 --~~~~~~~e~~e~al~~Ek~v~~~i~~l~~~A~~~~D~~t~~fl~-~~fi~eQ~ee~~~~~~~l~~l~~~~~~~~~~~~ 155 (160)
T cd00904 79 --DEWGGTLDAMEAALKLEKFVNQALLDLHELASEEKDPHLCDFLE-SHFLDEQVKEIKQVGDILTNLERLNGQQAGSGE 155 (160)
T ss_pred --cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHhh-chhhHHHHHHHHHHHHHHHHHHhhcCCCCCcee
Confidence 13458899999999999999999999999999999999999999 8 99999999999999999999997 3 7899
Q ss_pred hhhcH
Q 024785 248 WHFDQ 252 (262)
Q Consensus 248 ~lfD~ 252 (262)
|+||+
T Consensus 156 ~~~D~ 160 (160)
T cd00904 156 YLFDR 160 (160)
T ss_pred eeeCC
Confidence 99996
No 5
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-43 Score=296.35 Aligned_cols=160 Identities=30% Similarity=0.479 Sum_probs=154.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcc
Q 024785 91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSE 170 (262)
Q Consensus 91 ~s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~ 170 (262)
.++++..+||+|||.|+++||+|++||+||+. .+|||+|+||+.||.||+.||+||++|++.||++|.+..|.+|+.+
T Consensus 2 ls~~~~~~LN~Q~N~E~yas~lYl~maa~~~~--~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~~P~~~ 79 (167)
T COG1528 2 LSEKMIELLNEQMNLEFYASNLYLQMAAWCSS--ESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIEAPPNK 79 (167)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCcCCCccc
Confidence 57899999999999999999999999999995 7999999999999999999999999999999999999999999987
Q ss_pred CCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcCC-Cchhhh
Q 024785 171 FDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQ-GHGVWH 249 (262)
Q Consensus 171 f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr~g~-g~g~~l 249 (262)
|+ ++.++|+.+|++|+.++++|++|.++|.+++|+.|.+||+ ||+.||+|+++.++++++.++++|+ |.|+|+
T Consensus 80 ~~-----s~~e~f~~tlehEq~vt~~I~~L~~~a~~~kD~~T~nFLq-Wfv~EQ~eEe~l~~~I~d~~~~ag~~~~~l~~ 153 (167)
T COG1528 80 FS-----SLKELFEKTLEHEQKVTSSINELAEVAREEKDYATFNFLQ-WFVAEQVEEEKLFKTILDKLELAGNDGEGLYL 153 (167)
T ss_pred cC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCccchhh
Confidence 64 7899999999999999999999999999999999999999 9999999999999999999999996 899999
Q ss_pred hcHHhhcCC
Q 024785 250 FDQMLLHGE 258 (262)
Q Consensus 250 fD~~L~~~~ 258 (262)
+|++|++..
T Consensus 154 ~D~~L~~~~ 162 (167)
T COG1528 154 IDKELKNRA 162 (167)
T ss_pred hHHHHHhhc
Confidence 999998864
No 6
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=100.00 E-value=1.3e-41 Score=287.80 Aligned_cols=156 Identities=59% Similarity=0.957 Sum_probs=148.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCC-cc
Q 024785 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL-SE 170 (262)
Q Consensus 92 s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~-~~ 170 (262)
+++|+.+||+||+.|++|+|+|++||+||++.++|++|||+||+.+|+|||+||++|++|++.|||+|++++|++|. ..
T Consensus 1 ~~~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~~~~ 80 (161)
T cd01056 1 HEECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPEKDE 80 (161)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCCcc
Confidence 47899999999999999999999999999997779999999999999999999999999999999999999999997 43
Q ss_pred CCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHhhcCC---Cch
Q 024785 171 FDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESK-YLHEQVEAIKKISEYVAQLRRVGQ---GHG 246 (262)
Q Consensus 171 f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~-fL~EQve~ik~l~~~l~~Lrr~g~---g~g 246 (262)
|.+++++|+.||++|+.+++.|++++++|.+++|+.|.+||+ | ||.||+++++++++++++++++++ +.|
T Consensus 81 -----~~~~~e~l~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~-~~fl~eQ~e~~~~~~~~l~~l~~~~~~~~~~~ 154 (161)
T cd01056 81 -----WGSGLEALELALDLEKLVNQSLLDLHKLASEHNDPHLADFLE-SEFLEEQVESIKKLAGYITNLKRVGKPQSGLG 154 (161)
T ss_pred -----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCHhHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 468999999999999999999999999999999999999999 7 999999999999999999999986 789
Q ss_pred hhhhcHH
Q 024785 247 VWHFDQM 253 (262)
Q Consensus 247 ~~lfD~~ 253 (262)
+|+||+.
T Consensus 155 ~yl~D~~ 161 (161)
T cd01056 155 EYLFDKY 161 (161)
T ss_pred eeeccCC
Confidence 9999974
No 7
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=100.00 E-value=1.9e-37 Score=259.23 Aligned_cols=155 Identities=38% Similarity=0.596 Sum_probs=148.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccC
Q 024785 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF 171 (262)
Q Consensus 92 s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f 171 (262)
+++|+++||+||+.|+.|+|+|++||.||++ +++|||++||+..|+|||+||+++++|+++|||+|++++|++|..
T Consensus 1 ~~~~~~~Ln~~~~~El~A~~~Yl~~a~~~~~--~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~-- 76 (156)
T cd01055 1 SEKLEKALNEQINLELYSSYLYLAMAAWFDS--KGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPS-- 76 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCc--
Confidence 5789999999999999999999999999998 599999999999999999999999999999999999999998875
Q ss_pred CcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcCC-Cchhhhh
Q 024785 172 DHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQ-GHGVWHF 250 (262)
Q Consensus 172 ~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr~g~-g~g~~lf 250 (262)
+|+++.++++.+|.+|+.+++.|++++++|.+++|+.+++|++ ||+++|+++++++++++++++++|+ |+|+|+|
T Consensus 77 ---~~~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~l~-~~l~~q~e~~~~~~~~l~~l~~~g~~~~~~~~~ 152 (156)
T cd01055 77 ---EFESLLEVFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQ-WFVKEQVEEEALARDILDKLKLAGDDGGGLYML 152 (156)
T ss_pred ---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHh
Confidence 3468999999999999999999999999999999999999999 9999999999999999999999994 8999999
Q ss_pred cHHh
Q 024785 251 DQML 254 (262)
Q Consensus 251 D~~L 254 (262)
|+.|
T Consensus 153 d~~l 156 (156)
T cd01055 153 DKEL 156 (156)
T ss_pred cccC
Confidence 9875
No 8
>PRK10635 bacterioferritin; Provisional
Probab=99.96 E-value=9.6e-28 Score=203.68 Aligned_cols=143 Identities=19% Similarity=0.110 Sum_probs=137.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcc
Q 024785 91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSE 170 (262)
Q Consensus 91 ~s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~ 170 (262)
.++++++.||++++.||.|+++|+.+|.+|+. ||+++++++|+.+|.||++||++|++||+.+||.|+++++.+|...
T Consensus 3 ~~~~vi~~LN~~L~~El~Ai~QY~~ha~~~~~--~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~~~~g 80 (158)
T PRK10635 3 GDVKIINYLNKLLGNELVAINQYFLHARMFKN--WGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGKLNIG 80 (158)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Confidence 57899999999999999999999999999997 8999999999999999999999999999999999999999887654
Q ss_pred CCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcC
Q 024785 171 FDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVG 242 (262)
Q Consensus 171 f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr~g 242 (262)
.|+.++++.++.+|+.++..|++++.+|.+.+|+.+.++++ |||.++.+|+.++.+.+..++++|
T Consensus 81 ------~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~-~iL~dEe~H~~~le~~l~~i~~~G 145 (158)
T PRK10635 81 ------EDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMI-EILADEEGHIDWLETELDLIGKLG 145 (158)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38999999999999999999999999999999999999999 999999999999999999999997
No 9
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=99.95 E-value=6.2e-27 Score=196.99 Aligned_cols=142 Identities=21% Similarity=0.181 Sum_probs=136.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccC
Q 024785 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF 171 (262)
Q Consensus 92 s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f 171 (262)
++++.++||+||+.|+.++++|+.|+.||.. ++++|++.||++++.||++||++|++|++.+||.|.+.+++.|...
T Consensus 4 ~~~~~~~LN~~l~~E~~a~~~Y~~~~~~~~~--~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~~- 80 (157)
T TIGR00754 4 DPDVIQHLNKQLTNELTAINQYFLHARMQKN--WGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRIG- 80 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCCC-
Confidence 7899999999999999999999999999954 8999999999999999999999999999999999999999887654
Q ss_pred CcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcC
Q 024785 172 DHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVG 242 (262)
Q Consensus 172 ~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr~g 242 (262)
.++.++++.++++|+.++..|++++.+|.+.+|+.|.+||+ ||+.++.++..++..+++.+.++|
T Consensus 81 -----~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~-~~i~eee~h~~~l~~~l~~~~~~g 145 (157)
T TIGR00754 81 -----ETVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLE-EILEDEEEHIDWLETQLELIDKLG 145 (157)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 37889999999999999999999999999999999999999 999999999999999999999998
No 10
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=99.94 E-value=3.1e-25 Score=179.03 Aligned_cols=137 Identities=36% Similarity=0.460 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-----ccCCCcc
Q 024785 96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS-----ILMPLSE 170 (262)
Q Consensus 96 e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~-----I~~P~~~ 170 (262)
+++||++|+.|+.+++.|+.++.+|+. .+++|+++||+++++++++||+++++|+..|||.|...+ ++.|..
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~~--~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~- 77 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFDG--PNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPE- 77 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSS-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcC--CCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhcccc-
Confidence 578999999999999999999999995 799999999999999999999999999999999766655 445543
Q ss_pred CCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhc
Q 024785 171 FDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRV 241 (262)
Q Consensus 171 f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr~ 241 (262)
|+++.++|+.+++.|+.+...++++++.|.+.+|+.|.+|++ +|+.+|.++++++++++++++||
T Consensus 78 -----~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~-~~l~~~~~~~~~l~~~l~~l~~~ 142 (142)
T PF00210_consen 78 -----WTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLD-EFLEEEEKHIWMLQAHLTNLKRM 142 (142)
T ss_dssp -----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcC
Confidence 458999999999999999999999999999999999999997 99999999999999999999986
No 11
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=99.93 E-value=1.2e-24 Score=180.59 Aligned_cols=143 Identities=22% Similarity=0.210 Sum_probs=135.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccC
Q 024785 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF 171 (262)
Q Consensus 92 s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f 171 (262)
++++++.||++|+.|+.+++.|+.++.+|++ .+++|+++||+.++.||++||+.+.+|++.+||.|.+.++++|...
T Consensus 3 ~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~--~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~- 79 (153)
T cd00907 3 DPKVIEALNKALTGELTAINQYFLHARMLED--WGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIG- 79 (153)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcC-
Confidence 6789999999999999999999999999977 6899999999999999999999999999999999999888777543
Q ss_pred CcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcCC
Q 024785 172 DHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQ 243 (262)
Q Consensus 172 ~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr~g~ 243 (262)
.+..++++.++++|+.++..+++++.+|.+.+|+.|++|++ +++.++.+|+..++.++..++++|+
T Consensus 80 -----~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~-~~~~~e~~h~~~l~~~l~~~~~~g~ 145 (153)
T cd00907 80 -----EDVPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLE-EILEDEEEHIDWLETQLDLIDKMGL 145 (153)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 26789999999999999999999999999999999999999 9999999999999999999999984
No 12
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=99.89 E-value=2.8e-22 Score=164.57 Aligned_cols=131 Identities=18% Similarity=0.199 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCcC
Q 024785 95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHA 174 (262)
Q Consensus 95 ~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f~~~ 174 (262)
..+.||+.+..|+.++++|++|+.|+++ .|++|+|+||+.+|.+|+.||.++++|++.+||.|. .|+..
T Consensus 2 t~~~L~~a~~~E~~a~~~Y~~~a~~a~~--~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-----~~~~~---- 70 (134)
T cd01041 2 TEKNLLAAFAGESQARNRYTYFAEKARK--EGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----GPPIG---- 70 (134)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----CCCCC----
Confidence 4578999999999999999999999998 699999999999999999999999999999999999 44433
Q ss_pred ccCcHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 175 EKGDALYAMELTLSLEKL-TNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 175 e~~~~leale~AL~lEk~-v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
|+++++.|+.++.+|+. ++..|.+++.+|.+++|+.+.+|++ +++.++.+|.+++.+.+.+|
T Consensus 71 -~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~-~i~~~E~~H~~~l~~~l~~l 133 (134)
T cd01041 71 -IGDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFE-AIAEAEKVHAERYKKALENL 133 (134)
T ss_pred -cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHhhcc
Confidence 45889999999999996 8899999999999999999999999 99999999999999998765
No 13
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=99.88 E-value=2.5e-21 Score=159.86 Aligned_cols=138 Identities=20% Similarity=0.196 Sum_probs=121.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccc------
Q 024785 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIL------ 165 (262)
Q Consensus 92 s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~------ 165 (262)
.+++.+.||++++.|+.++++|+.++.++.. .++++++++|++++.||++||+++.+|++.+||+|......
T Consensus 4 ~~~~~~~Ln~~la~e~~~~~~y~~~~~~~~g--~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~ 81 (148)
T cd01052 4 VDELIELLNKAFADEWLAYYYYTILAKHVKG--PEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISG 81 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhc
Confidence 3578999999999999999999999999998 68999999999999999999999999999999999986642
Q ss_pred -CCCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024785 166 -MPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYV 235 (262)
Q Consensus 166 -~P~~~f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l 235 (262)
.+... .....++.++++.++..|+.+++.+++++++|.+ +|+.|++|++ ++|.+|.+|++++.+++
T Consensus 82 ~~~~~~--~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~-~D~~t~~ll~-~~l~de~~h~~~~~~~~ 148 (148)
T cd01052 82 CKCGYL--PPDPPDVKGILKVNLKAERCAIKVYKELCDMTHG-KDPVTYDLAL-AILNEEIEHEEDLEELL 148 (148)
T ss_pred ccccCC--CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHH-HHHHHHHHHHHHHHhhC
Confidence 11110 0123478999999999999999999999999975 9999999999 99999999999998764
No 14
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=99.85 E-value=7e-20 Score=152.74 Aligned_cols=143 Identities=20% Similarity=0.179 Sum_probs=135.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcc
Q 024785 91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSE 170 (262)
Q Consensus 91 ~s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~ 170 (262)
-.+++++.||+++..||.|.++|+.++..+.+ ||+.-++++|+++|.+|+.||++++++|+..+|.|+++++.+-..+
T Consensus 3 G~~~Vi~~LN~~L~~EL~ainQYflHsrM~~~--WG~~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~l~iG 80 (157)
T COG2193 3 GDPKVIRLLNEALGLELAAINQYFLHSRMYKN--WGLTKLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGKLRIG 80 (157)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--cChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccC
Confidence 35889999999999999999999999999986 9999999999999999999999999999999999999998874433
Q ss_pred CCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcC
Q 024785 171 FDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVG 242 (262)
Q Consensus 171 f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr~g 242 (262)
.++.++++..|.+|..+...+.+....|.+.+||.+++.++ ..|.++.||+.|+.+.+.-+.++|
T Consensus 81 ------~tv~E~L~~DL~~E~~a~~~lk~~i~~~e~~~Dyvsrdl~~-~iL~deEEHid~LetqL~li~~iG 145 (157)
T COG2193 81 ------ETVKEMLEADLALEYEARDALKEAIAYCEEVQDYVSRDLLE-EILADEEEHIDWLETQLDLIAKIG 145 (157)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH-HHHcchHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999 899999999999999999999997
No 15
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=99.81 E-value=1.5e-18 Score=141.21 Aligned_cols=121 Identities=21% Similarity=0.192 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCcC
Q 024785 95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHA 174 (262)
Q Consensus 95 ~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f~~~ 174 (262)
+++.||.||+.|+.+++.|+.|+.|++. .|++|+|++|+.+|.+|+.||+++.+++ |+ | |
T Consensus 2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~~--eG~~~~A~~f~~~a~eE~~HA~~~~~~l---~~------i--~------- 61 (123)
T cd01046 2 LEEDLEANFKGETTEVGMYLAMARVAQR--EGYPEVAEELKRIAMEEAEHAARFAELL---GK------V--S------- 61 (123)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHH---hc------C--c-------
Confidence 6789999999999999999999999998 6999999999999999999999999966 22 1 1
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 175 EKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 175 e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
+|+.++|+.++.+|+.++..|.+++++|.+++|+.+.+||+ +.++.+-+|.+++...+.++
T Consensus 62 --~~~~~~le~a~~~E~~~~~~~~~~~~~A~~egd~~~~~~~~-~~~~~E~~H~~~~~~~l~~~ 122 (123)
T cd01046 62 --EDTKENLEMMLEGEAGANEGKKDAATEAKAEGLDEAHDFFH-EAAKDEARHGKMLKGLLERY 122 (123)
T ss_pred --ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Confidence 37899999999999999999999999999999999999999 99999999999999888753
No 16
>PRK13456 DNA protection protein DPS; Provisional
Probab=99.65 E-value=8.7e-15 Score=126.88 Aligned_cols=141 Identities=18% Similarity=0.199 Sum_probs=123.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccc--C-CC
Q 024785 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIL--M-PL 168 (262)
Q Consensus 92 s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~--~-P~ 168 (262)
.+++++.||+.+..|+.+.|.|...++.... +.-++++.||.+.+.||+.||+.|.++|.+.||.|.+.+-+ . -.
T Consensus 18 ~~~li~lLn~AlA~E~~a~~~Y~~~a~~~~G--~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~ 95 (186)
T PRK13456 18 VDKLVELLVKNAAAEFTTYYYYTILRAHLIG--LEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISA 95 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhc
Confidence 4688999999999999999999999999987 67899999999999999999999999999999999987763 0 01
Q ss_pred ccC-CcCc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024785 169 SEF-DHAE-KGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVA 236 (262)
Q Consensus 169 ~~f-~~~e-~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~ 236 (262)
..+ .-++ ..|+.++++..|..|+.++..++++++.+. .+|+.|++.++ .+|.++++|..+|.+++.
T Consensus 96 ~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~-~kDp~T~~l~~-~IL~dE~eH~~dl~~lL~ 163 (186)
T PRK13456 96 CPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTA-GKDPRTYDLAL-AILQEEIEHEAWFSELLG 163 (186)
T ss_pred CccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 111 0012 348999999999999999999999999998 68999999999 799999999999999985
No 17
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=99.31 E-value=7.9e-11 Score=96.75 Aligned_cols=129 Identities=18% Similarity=0.105 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc--------ccCCCc
Q 024785 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS--------ILMPLS 169 (262)
Q Consensus 98 aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~--------I~~P~~ 169 (262)
.||..+..++..+..|....-+... .++..++.+|.+.++++++|+..+.+++...||.|...+ ++.++.
T Consensus 2 ~Ln~~lA~~~~~~~~~~~~HW~v~G--~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~~~~ 79 (139)
T cd01043 2 ALNQLLADLYVLYLKLKNYHWNVKG--PNFFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKEEPA 79 (139)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCccC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCCCCC
Confidence 5888999999999998887777766 689999999999999999999999999999999998764 544432
Q ss_pred cCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 024785 170 EFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEY 234 (262)
Q Consensus 170 ~f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~ 234 (262)
.+ .++.++++..+..|..+...+++.++.|.+.+|+.|+++++ .++.+..+++-++..+
T Consensus 80 ~~-----~~~~~~l~~~~~~~~~~i~~~~~~i~~a~~~~D~~t~~ll~-~il~~~ek~~w~l~a~ 138 (139)
T cd01043 80 GV-----LSAKEMVAELLEDYETLIEELREAIELADEAGDPATADLLT-EIIRELEKQAWMLRAH 138 (139)
T ss_pred CC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 22 26789999999999999999999999999999999999999 8999988888777643
No 18
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=99.29 E-value=1.8e-10 Score=88.19 Aligned_cols=123 Identities=22% Similarity=0.249 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-----ccCCCccCC
Q 024785 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS-----ILMPLSEFD 172 (262)
Q Consensus 98 aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~-----I~~P~~~f~ 172 (262)
+||..+..|+.+...|..++..+. .+++..+|...+.+|+.|++.|.+++..+||.+.... ...+.
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~-----~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~~~~~~~~---- 72 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP-----DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAYALP---- 72 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhcccC----
Confidence 689999999999999999999886 5789999999999999999999999999999887543 11111
Q ss_pred cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 024785 173 HAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEY 234 (262)
Q Consensus 173 ~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~ 234 (262)
....+...++..+...|+.....+..+.+.+. |+.+.+++. +++.++..|.+.+..+
T Consensus 73 -~~~~~~~~~l~~~~~~E~~~~~~y~~~~~~~~---d~~~~~~~~-~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 73 -KTSDDPAEALRAALEVEARAIAAYRELIEQAD---DPELRRLLE-RILADEQRHAAWFRKL 129 (130)
T ss_pred -CCccCHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 12357889999999999999999998888774 999999999 8999999999988765
No 19
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=99.25 E-value=6.4e-10 Score=93.07 Aligned_cols=137 Identities=14% Similarity=0.083 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCC
Q 024785 92 TDDCEAAINEQIN---VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL 168 (262)
Q Consensus 92 s~~~e~aLNeQIn---~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~ 168 (262)
+++.-..|++|+. .|+.+..+|+..+.-... +.+.+++.|...|.+|++|++.|.+++.++||.+.+..-....
T Consensus 11 ~~~~~~~~~~~~~g~~~E~~ai~~Y~y~~~~~~~---~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~~ 87 (154)
T cd07908 11 NPRYAELLLDDYAGTNSELTAISQYIYQHLISEE---KYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSDK 87 (154)
T ss_pred ChHHHHHHHHHhCCcchHHHHHHHHHHHHHHccC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhcccc
Confidence 5677788899988 999999999999887764 5789999999999999999999999999999988754321100
Q ss_pred c-cCCc---CccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024785 169 S-EFDH---AEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYV 235 (262)
Q Consensus 169 ~-~f~~---~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l 235 (262)
. .|.. ....+..++++.++..|+.....|.++... ..|+.+.+.|+ ..+.++.+|+++|.+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~---~~d~~~r~ll~-~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 88 FTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAET---IKDPYIRALLN-RIILDEKLHIKILEELL 154 (154)
T ss_pred CCcCCccccCCccCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHH-HHHHHHHHHHHHHHhhC
Confidence 0 0000 012478899999999999999999998884 58999999999 89999999999998753
No 20
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=98.95 E-value=2.4e-08 Score=79.59 Aligned_cols=129 Identities=24% Similarity=0.250 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CeeeeccccC--CCcc--
Q 024785 97 AAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG--GKVKLQSILM--PLSE-- 170 (262)
Q Consensus 97 ~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RG--G~v~l~~I~~--P~~~-- 170 (262)
+.||..|..|..+...|...+..+++ +++..+|+..+.+|+.|++.|.+.+..+| +.+.+..-.. +...
T Consensus 1 ~~l~~a~~~E~~~~~~Y~~~a~~~~~-----~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (139)
T cd01045 1 EILALAIKMEEEAAEFYLELAEKAKD-----PELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEP 75 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhh
Confidence 36899999999999999999998875 38999999999999999999999999997 3333321100 0000
Q ss_pred C---CcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 024785 171 F---DHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEY 234 (262)
Q Consensus 171 f---~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~ 234 (262)
+ ......+..++++.++..|+.....+.++... ..|+.+...+. .++.+..+|.+.+.++
T Consensus 76 ~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~---~~d~~~~~~~~-~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 76 EFKKALESLMDPLEALRLAIEIEKDAIEFYEELAEK---AEDPEVKKLFE-ELAEEERGHLRLLEEL 138 (139)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 0 00122578999999999999999888877764 57899999999 8999999999999864
No 21
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=98.93 E-value=1.1e-07 Score=80.90 Aligned_cols=135 Identities=12% Similarity=0.092 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCC
Q 024785 92 TDDCEAAINEQIN---VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL 168 (262)
Q Consensus 92 s~~~e~aLNeQIn---~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~ 168 (262)
++....+|.+|+. -|+.++.+|+..+..++ ..+.++..|.+.+.||+.|++.|.+.+...||.+.-.+- .
T Consensus 18 ~p~~A~~l~~~~gG~~gEl~ai~qYl~q~~~~~----~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g~pw---~ 90 (156)
T cd01051 18 DPRFAKLLQEQLGGAFGELSAAMQYLFQSFNFR----EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQGVPW---T 90 (156)
T ss_pred CHHHHHHHHHHhCCccHHHHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcC---C
Confidence 3445555666653 69999999999999994 358899999999999999999999999999984332211 1
Q ss_pred ccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 169 SEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 169 ~~f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
..|.. ..+++...+...+..|+.....+.++++.+ +|+.+.+.|. +.+.+++.|...+...+..+
T Consensus 91 ~~yv~-~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~---~Dp~v~~~l~-~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 91 AAYIQ-SSGNLVADLRSNIAAESRARLTYERLYEMT---DDPGVKDTLS-FLLVREIVHQNAFGKALESL 155 (156)
T ss_pred CcccC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 12211 136899999999999999999999999987 4999999999 89999999999999998876
No 22
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=98.74 E-value=4.7e-07 Score=72.21 Aligned_cols=129 Identities=21% Similarity=0.262 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccc-------CCCc
Q 024785 97 AAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIL-------MPLS 169 (262)
Q Consensus 97 ~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~-------~P~~ 169 (262)
+.|+..|..|..+...|..++.-+.++ + |.+++.|+..|.+|.+|+..|.+.+.++++.+...... .|..
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~~~--~-p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAKDE--G-PELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKL 77 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhc--c-cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchh
Confidence 468899999999999999999999874 5 88999999999999999999999999998765433111 1111
Q ss_pred cCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 024785 170 EFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEY 234 (262)
Q Consensus 170 ~f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~ 234 (262)
... ...++..+++.++..|+.....+..+.. ...|+....+++ +...+.-+|.+.|..+
T Consensus 78 ~~~--~~~~~~~~l~~a~~~E~~~~~~Y~~~a~---~~~~~~~~~~~~-~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 78 EEE--TDENLEEALEMAIKEEKDAYEFYAELAR---KAPDPEIRKLFE-ELAKEEKEHEDLLEKL 136 (137)
T ss_dssp CSS--HHHHHHHHHHHHHHHHHTHHHHHHHHHH---HTTSHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 111 1126789999999999988888877655 668999999999 8999999999988764
No 23
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=98.61 E-value=4.3e-06 Score=70.37 Aligned_cols=141 Identities=17% Similarity=0.219 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee-----eeccccC
Q 024785 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV-----KLQSILM 166 (262)
Q Consensus 92 s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v-----~l~~I~~ 166 (262)
.+++.+.|-.....|+.+.|-|..++..... ..=.|...|....-.|-+.|++.+..++.+.||.+ ++..|..
T Consensus 15 ~~kli~~Llka~AaE~tt~YYYtilr~~l~G--le~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dISg 92 (172)
T COG2406 15 KDKLIELLLKAAAAEWTTYYYYTILRYALKG--LEGEGIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKLHDISG 92 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhhcC
Confidence 3577888888899999999999988885543 22333445555555566779999999999999986 3444432
Q ss_pred CCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024785 167 PLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVA 236 (262)
Q Consensus 167 P~~~f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~ 236 (262)
=+.-+-..+|.|+.+.++.+++.|+.....+.+|.++. ..+|+.|.+.-+ ..|.|+++|..|+...+.
T Consensus 93 C~~a~LPedp~D~~~~l~vlv~AE~CAir~ykeic~~T-~GkDprTyeLa~-~IL~eEi~hr~~~~~ll~ 160 (172)
T COG2406 93 CKPAYLPEDPYDIDEILAVLVKAERCAIRAYKEICNLT-AGKDPRTYELAE-AILREEIEHRTWFLELLG 160 (172)
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHccc-cCCCcchHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 10001112456899999999999999999999999986 569999999999 899999999999987653
No 24
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=98.50 E-value=1.3e-05 Score=68.37 Aligned_cols=132 Identities=10% Similarity=0.079 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--------cc
Q 024785 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL--------QS 163 (262)
Q Consensus 92 s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l--------~~ 163 (262)
.+++.+.||..+.-++.....|..+.-+-.. ..+..+..+|.+++.++++|+..+.+++...||.|.- ..
T Consensus 20 ~~~~~~~Ln~~LA~~~~l~~k~~~~hW~v~G--~~f~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~~t~~e~~~~s~ 97 (162)
T PRK09448 20 KKATIELLNQQLAQFIDLSLITKQAHWNMKG--ANFIAVHEMLDGFRTALEDHLDTMAERAVQLGGVALGTTQVVASKTP 97 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccC--CCHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCCCCHHHHHHhCC
Confidence 3568899999999999999999988887777 4788899999999999999999999999999999843 22
Q ss_pred ccC-CCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024785 164 ILM-PLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYV 235 (262)
Q Consensus 164 I~~-P~~~f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l 235 (262)
|+. |... .+..++++..++.-..+...+++.+ .+.+|+.|.+++. .++.+..+.+=.|+.++
T Consensus 98 i~e~~~~~------~~~~~~l~~l~~d~~~~~~~~r~~i---~e~~D~~T~dll~-~~~~~~eK~~WmL~a~l 160 (162)
T PRK09448 98 LKSYPLDI------HNVQDHLKALADRYAIVANDVRKAI---DEAGDEDTADIFT-AASRDLDKFLWFIEAHI 160 (162)
T ss_pred CCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHHH---hhcCChhHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 333 2221 2457889999998889999999888 7789999999999 89988888887777664
No 25
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=98.32 E-value=9.4e-06 Score=65.85 Aligned_cols=121 Identities=16% Similarity=0.103 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCc--Cc
Q 024785 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDH--AE 175 (262)
Q Consensus 98 aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f~~--~e 175 (262)
.+|+.+..|..+..+|..++....+ +...+.|...|++|++|++.+-+++..+|+.+. .+....-+.. ..
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la~~~~~-----~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 73 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLAKREKD-----PENREILLKLAEDERRHAEFWKKFLGKRGVPPP---RPKLKIFFYKLLAR 73 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---CccHHHHHHHHHHH
Confidence 4789999999999999999998765 358999999999999999999999999998875 1100000000 00
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024785 176 KGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVA 236 (262)
Q Consensus 176 ~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~ 236 (262)
..++..++..+...|+.....+.++... ...++ ..+.|+.+|++.|.++++
T Consensus 74 ~~g~~~~l~~~~~~E~~ai~~Y~~~~~~---------~~~~~-~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 74 IFGPTFVLKLLERGEERAIEKYDRLLEE---------RPELK-EIIADELEHEEVLIALLD 124 (125)
T ss_pred HHhHHHHHHHHHHhHHhhHhhHHhhhhh---------hHHHH-HHHHHHHHHHHHHHHhhh
Confidence 1244568888889999999999988776 44667 799999999999988764
No 26
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=8.2e-05 Score=64.52 Aligned_cols=140 Identities=18% Similarity=0.175 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec---------
Q 024785 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ--------- 162 (262)
Q Consensus 92 s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~--------- 162 (262)
...++++|+..|..|..|...|..++..+++. -+.+.|...+.+|+.|..+|-+.+.+++++..-.
T Consensus 22 ~~~~~e~L~~Ai~~E~eA~~fY~~lae~~~~~-----~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~ 96 (176)
T COG1633 22 ELSIEELLAIAIRGELEAIKFYEELAERIEDE-----EIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIES 96 (176)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhh
Confidence 34689999999999999999999999999975 4899999999999999999999999999876111
Q ss_pred cccCCCcc---CCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 024785 163 SILMPLSE---FDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (262)
Q Consensus 163 ~I~~P~~~---f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lr 239 (262)
.+-.+... +... .+.+++++.|...|+...+-+..+.... .|......+. +.+++.-.|...+...++.+.
T Consensus 97 ~~~~~~~~~~~~~~~--~~~~~~I~~a~~~E~~t~~~Y~~~~~~~---~~~~~~~~~~-~~a~~E~~H~~~l~~~~~~~~ 170 (176)
T COG1633 97 EILEYLQPGKEMEKS--VSYLEAIEAAMEAEKDTIEFYEELLDEL---VNEEAKKLFK-TIADDEKGHASGLLSLYNRLT 170 (176)
T ss_pred hhccccCcccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHc---cCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 00111111 1111 3789999999999999999999887754 6677787888 899999999999999888877
Q ss_pred hcC
Q 024785 240 RVG 242 (262)
Q Consensus 240 r~g 242 (262)
+.+
T Consensus 171 ~~~ 173 (176)
T COG1633 171 STG 173 (176)
T ss_pred ccc
Confidence 664
No 27
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=98.11 E-value=0.00031 Score=59.86 Aligned_cols=132 Identities=17% Similarity=0.121 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--------eccc
Q 024785 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK--------LQSI 164 (262)
Q Consensus 93 ~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~--------l~~I 164 (262)
.++.+.||+++.-=+......+...-+-.. ..+--+..+|.++.++-.+|...+.+++...||.|. ...|
T Consensus 14 ~~~~~~Ln~~lAd~~~Ly~k~~~~HWnV~G--~~F~~lHe~~ee~y~el~~~~DeiAERi~~LGg~p~~t~~~~~~~s~i 91 (156)
T COG0783 14 KKIAEALNQLLADLYVLYLKTHNYHWNVKG--PNFFALHEKLEELYEELAEHVDEIAERIRALGGVPLGTLSEYLKLSSI 91 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccceeC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHhCCC
Confidence 678888888875433332222222222222 345557799999999999999999999999999874 2233
Q ss_pred cCCCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHH
Q 024785 165 LMPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISE 233 (262)
Q Consensus 165 ~~P~~~f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~ 233 (262)
+..+.+ .++.++++.....-+.+.+.+++...+|.+.+|..|.+++. ..+.+..+.+=.|+-
T Consensus 92 ke~~~~------~~~~~~l~~l~~~~~~l~~~~r~~~~~a~e~gD~~Tadl~~-~~~~~~EK~~Wml~a 153 (156)
T COG0783 92 KEEPGD------YTAREMLKELVEDYEYLIKELRKGIELADEAGDEVTADLLT-DIIRELEKTLWMLRA 153 (156)
T ss_pred cccCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHH-HHHHHHHHHHHHHHH
Confidence 332222 37899999999999999999999999999999999999999 788887776655543
No 28
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.92 E-value=0.00056 Score=73.23 Aligned_cols=139 Identities=11% Similarity=0.076 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccC-
Q 024785 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF- 171 (262)
Q Consensus 93 ~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f- 171 (262)
....+.|--.|.+|-..--.|..++.-.. -+.+.++|...|++|++|.+.|.+....--.. .-.....+...+
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~a~-----~~~~K~lF~~LA~eE~~H~~~l~~~~~~~~~~-~~~~~~~~~~~~~ 932 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKETS-----DPVLKELFLKFAGMEQEHMATLARRYHAAAPS-PTEGFKIERAAIM 932 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-cccccccchhhhh
Confidence 45688999999999999999999999765 36799999999999999999998876431000 000000000000
Q ss_pred Cc--CccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHhhc
Q 024785 172 DH--AEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQ-LADFVESKYLHEQVEAIKKISEYVAQLRRV 241 (262)
Q Consensus 172 ~~--~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~-t~~FLe~~fL~EQve~ik~l~~~l~~Lrr~ 241 (262)
.. ..+.+..++++.|+..|+....-|.++.+. ..|.. ...+++ .+.+|+-+|++.|.++++.++.-
T Consensus 933 ~~~~~~~~~~~~al~lAm~~Ekdai~fY~~la~~---~~d~e~~k~l~~-~LA~EEk~Hl~~L~~~~d~~~~~ 1001 (1006)
T PRK12775 933 AGVKGRPDDPGNLFRIAIEFERRAVKFFKERVAE---TPDGSVERQLYK-ELAAEEREHVALLTTEFERWKQG 1001 (1006)
T ss_pred hhhccccCCHHHHHHHHHHHHHHHHHHHHHHHhh---CCChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcc
Confidence 00 112468999999999999999999887775 46775 688999 89999999999999999999864
No 29
>PF13668 Ferritin_2: Ferritin-like domain
Probab=97.79 E-value=0.0028 Score=51.74 Aligned_cols=131 Identities=17% Similarity=0.193 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcC---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCC
Q 024785 96 EAAINEQINVEYNVSYVYHAMFAYFDRD---NVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFD 172 (262)
Q Consensus 96 e~aLNeQIn~El~aSy~YlsmAa~f~~~---~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f~ 172 (262)
.+.||-.++.|+...-.|..-+.-+..+ ..-=+....+|+.....|+.|+..|-+.+. |+++. +.|..+|.
T Consensus 3 ~~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~----~~~~~~~~ 76 (137)
T PF13668_consen 3 LDILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPV----PPPAYDFP 76 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCC----CCCccccc
Confidence 3678999999999999999988854211 012345678999999999999999998887 76663 45555552
Q ss_pred cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024785 173 HAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVA 236 (262)
Q Consensus 173 ~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~ 236 (262)
-..+.+....+..|+..|......+..+.... .|+.+...+. .++..+.+|..+++.++.
T Consensus 77 ~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~---~~~~~~~~~~-~i~~~Ea~H~~~ir~ll~ 136 (137)
T PF13668_consen 77 FDPFTDDASFLRLAYTLEDVGVSAYKGAAPQI---EDPELKALAA-SIAGVEARHAAWIRNLLG 136 (137)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 23456899999999999999999999887754 5888888888 799999999999987764
No 30
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=97.69 E-value=0.0017 Score=55.92 Aligned_cols=126 Identities=14% Similarity=0.124 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCc
Q 024785 94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDH 173 (262)
Q Consensus 94 ~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f~~ 173 (262)
..++-|-+...-|=.+-..|+.||...+. -|++.+|+.|+..|.+|..||..+.+-+.+.+ .
T Consensus 4 ~t~~~L~~aF~GEs~a~~rY~~~A~~A~~--eG~~~va~lfr~iA~~E~~HA~~~~~~l~~~~---------~------- 65 (166)
T COG1592 4 ETEENLRKAFAGESMAVMRYLIFAKVAEE--EGYPEIARLFRAIAEAEAVHAKNHLKLLGKLL---------L------- 65 (166)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------c-------
Confidence 35566777777888899999999999998 49999999999999999999999998887766 1
Q ss_pred CccCcHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 024785 174 AEKGDALYAMELTLSLEKLTNE-KLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (262)
Q Consensus 174 ~e~~~~leale~AL~lEk~v~~-~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lr 239 (262)
-++|..+-++.+++-|..-.. .+......|...++-....+++ +-....-.|.+.+...++.+.
T Consensus 66 -~~~~~~eNl~~aieGE~~e~~emyp~~ae~A~~~g~~~~a~~f~-~~~~~Ek~H~~~~~~~Le~~~ 130 (166)
T COG1592 66 -VLGDTRENLEEAIEGETYEITEMYPVFAEVAEEEGFKEAARSFR-AAAKAEKRHAEMFRGLLERLE 130 (166)
T ss_pred -ccccHHHHHHHHHccchHHHHHhChHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Confidence 124778888889998875544 4558889999999888888999 888889999999999888873
No 31
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=97.18 E-value=0.015 Score=50.05 Aligned_cols=122 Identities=17% Similarity=0.197 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-ccCCCccCCc---CccCcH
Q 024785 104 NVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS-ILMPLSEFDH---AEKGDA 179 (262)
Q Consensus 104 n~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~-I~~P~~~f~~---~e~~~~ 179 (262)
.-|+.|..+|......+.+ +.+..++.+.+.+|..|-..|-+.+..+|++|.+-. += ....|-- .-....
T Consensus 10 AGE~gA~~IY~gQ~~~~~~-----~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW-~~~gf~lG~~tal~G~ 83 (165)
T cd01042 10 AGEVGAVRIYRGQLAVARD-----PAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLW-YVAGFALGALTALLGK 83 (165)
T ss_pred cchHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHHHHHHHHhhCh
Confidence 3588999999999998864 789999999999999999999999999999997642 11 0001100 000123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 024785 180 LYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKIS 232 (262)
Q Consensus 180 leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~ 232 (262)
.-+|-+.-+.|+.+...|++-.+.=....|..+.+.|+ .|.+|+.+|-+.-.
T Consensus 84 ~~a~~~~~avE~~V~~Hy~~ql~~L~~~~d~~l~~~l~-~~r~DE~~H~d~A~ 135 (165)
T cd01042 84 KAAMACTAAVETVVEEHYNDQLRELPAQPDKELRAIIE-QFRDDELEHADIAE 135 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HHHHHHHHHHHHHH
Confidence 44677888899999999988665543335999999999 89999999987654
No 32
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=96.66 E-value=0.2 Score=47.00 Aligned_cols=149 Identities=20% Similarity=0.234 Sum_probs=109.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccC--
Q 024785 90 KFTDDCEAAINEQINVEYNVSYVYHAM-FAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILM-- 166 (262)
Q Consensus 90 ~~s~~~e~aLNeQIn~El~aSy~Ylsm-Aa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~-- 166 (262)
.+++....+|---.-.| ...=.|..+ ..+|..++..-+++++|......||-.|+.-|-+|+..- |++....+..
T Consensus 55 ~L~~~~~~~l~~~~itE-d~LP~Y~~~L~~~f~~~~~~~~~w~~w~~~WtaEE~rHg~aL~~YL~~s-g~vdp~~le~~~ 132 (297)
T cd01050 55 ELPDDARVALVGNLLTE-EALPTYHSMLNRLFGLDDESPTAWARWVRRWTAEENRHGDLLNKYLYLT-GRVDPRALERTR 132 (297)
T ss_pred cCCHHHHHHHHHHHHHh-hccHHHHHHHHHHcCcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 36777777776666666 334445544 444444322347899999999999999999999999885 5554444331
Q ss_pred ---CCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcC
Q 024785 167 ---PLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVG 242 (262)
Q Consensus 167 ---P~~~f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr~g 242 (262)
-..+|+.....++...|-...-.|+...-.+.++.+.|. .+||.+...+. ..-.++..|.+-..+++..+-..-
T Consensus 133 ~~~~~~G~~~~~~~~~~~~~~y~~fqE~aT~v~y~nl~~~a~-~gdPvL~~i~~-~IA~DE~rH~~fy~~~v~~~le~d 209 (297)
T cd01050 133 QYLIGSGFDPGTDNSPYRGFVYTSFQELATRISHRNTARLAG-AGDPVLAKLLG-RIAADEARHEAFYRDIVEALFELD 209 (297)
T ss_pred HHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 112333222235667888888899999999999999998 89999999999 899999999999999998765543
No 33
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=96.39 E-value=0.14 Score=42.52 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccC---------
Q 024785 96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILM--------- 166 (262)
Q Consensus 96 e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~--------- 166 (262)
+..||+.|...+.+-.-|-..+...++ |.+..+|.+.+.+-..|+..|-.++...||.|.-.+-.+
T Consensus 2 i~~Ln~Lie~~~D~~~gY~~aae~v~~-----~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~lhr~w~~ 76 (139)
T TIGR02284 2 IHSLNDLIEISIDGKDGFEESAEEVKD-----PELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGSLHQFWGK 76 (139)
T ss_pred hHHHHHHHHHcccHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 578999999999999999999987654 689999999999999999999999999999886422110
Q ss_pred CCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Q 024785 167 PLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVE 217 (262)
Q Consensus 167 P~~~f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe 217 (262)
...-|.. ++-..+++.+..-|+.+.+.|.+..+-. .-++.+...|+
T Consensus 77 lks~~~~---~~d~aiL~~~e~gEd~~~~~y~~aL~~~--~l~~~~r~~l~ 122 (139)
T TIGR02284 77 IRATLTP---NDDYVVLEEAERGEDRAKKAYDETLADQ--DTPAAARDVAL 122 (139)
T ss_pred HHHHHcC---CChHHHHHHHHHhHHHHHHHHHHHHhcC--CCChHHHHHHH
Confidence 0011110 1334567777788888777777766532 25777777776
No 34
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=96.27 E-value=0.34 Score=39.92 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccC-----
Q 024785 97 AAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF----- 171 (262)
Q Consensus 97 ~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f----- 171 (262)
++|.-.+..|..+--.|..++-.|. .-.-|...+..|.+|...+...+.+.|..... .+.+..-|
T Consensus 3 ~~L~~Ale~Ek~a~~~Y~~~~~k~~--------~~~~F~~la~~E~~H~~~l~~L~~~~~~~~p~--~~~~~~~f~~~~~ 72 (135)
T cd01048 3 AALLYALEEEKLARDVYLALYEKFG--------GLRPFSNIAESEQRHMDALKTLLERYGLPDPV--DPFSGGVFTNPQY 72 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--------CcchHHHHHHHHHHHHHHHHHHHHHcCCCCCC--CccccccccchhH
Confidence 5678889999999999999998773 45678888999999999999888877744211 11111111
Q ss_pred Cc---CccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHH
Q 024785 172 DH---AEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKI 231 (262)
Q Consensus 172 ~~---~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l 231 (262)
+. ....+..+|++.+...|+....-|.++..- ..|..+...++ ....+.-+|..-+
T Consensus 73 ~~l~~~~~~s~~~al~~g~~~E~~~i~~ye~~~~~---~~d~d~k~v~~-~L~~~e~~H~~~f 131 (135)
T cd01048 73 NQLVEQGPKSLQDALEVGVLIEELDIADYDRLLER---TQNPDIRDVFE-NLQAASRNHHLPF 131 (135)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHh---cccHHHHHHHH-HHHHHHHHHHHHH
Confidence 00 112478999999999999988888877664 46788888888 7777777776544
No 35
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=96.07 E-value=0.33 Score=42.05 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec-cccCCCccCC--c-CccC
Q 024785 102 QINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ-SILMPLSEFD--H-AEKG 177 (262)
Q Consensus 102 QIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~-~I~~P~~~f~--~-~e~~ 177 (262)
--.-|+.|-.+|..-...+.. .+.+..++++..++|..|-..+-+.+.++|.+|.+- |+=.. ..|- . .-..
T Consensus 10 dHAGE~~A~~iY~gQ~~~~~~----~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw~~-~g~~LG~~tal~ 84 (172)
T PF03232_consen 10 DHAGEVGAVRIYRGQLAVARR----DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLWYV-AGFALGALTALL 84 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHHHH-HHHHHHHHHHhh
Confidence 346799999999999998874 678999999999999999999999999999998653 21100 0000 0 0000
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 024785 178 DALYAMELTLSLEKLTNEKLLNLHKVAN---KNHDVQLADFVESKYLHEQVEAIKKIS 232 (262)
Q Consensus 178 ~~leale~AL~lEk~v~~~l~~L~~lA~---~~~D~~t~~FLe~~fL~EQve~ik~l~ 232 (262)
...-+|-+.-+.|..+.+.|++-.+.-. ...|..+.+-|+ .|-+|+.+|-+.-.
T Consensus 85 G~~~~~a~t~avE~~V~~Hy~~Ql~~L~~~~~~~d~~l~~~i~-~~r~DE~~H~d~A~ 141 (172)
T PF03232_consen 85 GDKAAMACTAAVETVVEEHYNDQLRELPAMGEEEDPELRAIIE-QFRDDELEHRDTAI 141 (172)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH-HHHHHHHHHHHHHH
Confidence 2234667777889999999988666544 268999999999 89999999987654
No 36
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=95.99 E-value=0.72 Score=43.94 Aligned_cols=148 Identities=18% Similarity=0.210 Sum_probs=99.0
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccc
Q 024785 89 HKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDR---DNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIL 165 (262)
Q Consensus 89 q~~s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~---~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~ 165 (262)
+.++++...+|---+-.|=+.---...++.+|.. +.....+.++|-.....||-.|+.-|-+||.-.| .+....+.
T Consensus 56 ~~Lpd~~~~alv~~llTEd~LPsY~~~l~~~~~~~~~~ga~~~~W~~wv~~WTAEEnRHg~~L~~YL~vsg-~vDp~~lE 134 (330)
T PF03405_consen 56 STLPDDARVALVGNLLTEDNLPSYHRELATLFGVRDEDGASDSPWGRWVGRWTAEENRHGDALRDYLYVSG-RVDPVALE 134 (330)
T ss_dssp HTS-HHHHHHHHHHHHHHHTHHHHHHHHTTSTTT--SSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SS-CCCCC
T ss_pred ccCCHHHHHHHHHHHHhhhhhhHHHHHHHhhcCccccCCCCCCcHHHHcccccccccccHHHHHHHHHHhC-CCCHHHHH
Confidence 4478887666665555554443322334444443 1111456899999999999999999999997755 44444333
Q ss_pred CC-----CccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 166 MP-----LSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 166 ~P-----~~~f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
.- ..+|+.....++...|-...-.|+...-...++.++|.+.+|+.+...+. ..=.++..|..-..+++..+
T Consensus 135 ~~r~~~i~~G~~~~~~~~p~~~~vYtsfQE~AT~vsh~n~~~~a~~~~DpvL~~il~-~IA~DE~rH~~fy~~iv~~~ 211 (330)
T PF03405_consen 135 RTRMYLITAGFDPGFESDPYLGFVYTSFQERATQVSHRNTGRLAKQAGDPVLAQILG-RIAADEARHEAFYRNIVEAY 211 (330)
T ss_dssp HCCHHHHHH----S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHH-HHHhhHHHHHHHHHHHHHHH
Confidence 21 11333221136778888888899999999999999999999999988887 77778887777777666554
No 37
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=95.07 E-value=0.21 Score=39.23 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec
Q 024785 94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ 162 (262)
Q Consensus 94 ~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~ 162 (262)
+.+..||+.|.....+...|-..+.-+++ +.+..+|.+.+.+...|+..|-.++...||.|.-.
T Consensus 1 ~~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~~-----~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~ 64 (111)
T PF09537_consen 1 ETIEALNDLLKGLHDGIEGYEKAAEKAED-----PELKSLFQEFAQERQQHAEELQAEIQELGGEPEES 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--S-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcc
Confidence 46789999999999999999999998874 67999999999999999999999999999998543
No 38
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=92.60 E-value=2.4 Score=38.86 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCC
Q 024785 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFD 172 (262)
Q Consensus 93 ~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f~ 172 (262)
..-...|..-.+.|++|...++-..+-|.. +.- ..|-.=|.+.+.||-.|-..+.+++...|. .+..++....=|+
T Consensus 65 ~~r~~llHaiAhIE~~AIdLa~Da~~RF~~-~lP-~~f~~D~~~va~dEarHf~ll~~rL~~lG~--~yGd~P~h~gLw~ 140 (253)
T PF04305_consen 65 EGRAALLHAIAHIELNAIDLALDAIYRFHP-NLP-REFYDDWLRVADDEARHFRLLRERLEELGS--DYGDLPAHDGLWE 140 (253)
T ss_pred hhHHHHHHHhcchHHHHHHHHHHHHHHHhc-cCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCcchhhHHHH
Confidence 344677777889999999999999999922 122 235555667899999999999999999994 5555544332121
Q ss_pred cCccC--cHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 024785 173 HAEKG--DALYAME-LTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRR 240 (262)
Q Consensus 173 ~~e~~--~~leale-~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr 240 (262)
..+.+ |++.=|. .-+.+|..--..--.+.+.-.+.+|..++..|+ -.+.|++.|++.=......+..
T Consensus 141 ~~~~t~~dl~~R~A~vp~~~EArGLD~~p~~~~k~~~~gD~~sa~iL~-~I~~DEi~HV~~G~rWf~~~c~ 210 (253)
T PF04305_consen 141 AAEQTAHDLLARMALVPRVLEARGLDVTPFIIEKFRSAGDEESAAILE-IILRDEIGHVAIGNRWFRYLCE 210 (253)
T ss_pred HHHHhccCHHHHHHHHHHHHHhhCCCCCHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHH
Confidence 11100 2222111 112233332222233444455789999999999 8999999999654444444443
No 39
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=92.49 E-value=5.9 Score=33.48 Aligned_cols=137 Identities=16% Similarity=0.135 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccc-------
Q 024785 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIL------- 165 (262)
Q Consensus 93 ~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~------- 165 (262)
+-....|.+....|-...-.+-.|+.-..+ |.+..-|.++..+-+.|..+|-+-+...|+.|.-..-+
T Consensus 4 ~~~~~~L~d~y~aE~q~~~~l~~~~~~a~~-----~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~ 78 (159)
T PF05974_consen 4 DLFIDELRDLYSAEKQLLKALPKLAEAASS-----PELKAALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVA 78 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-SS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHH
Confidence 345678888999999999999999987653 78999999999999999999999999999988533300
Q ss_pred ---CCCccCCcCccCcHHHH--HHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024785 166 ---MPLSEFDHAEKGDALYA--MELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQ 237 (262)
Q Consensus 166 ---~P~~~f~~~e~~~~lea--le~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~ 237 (262)
.-....... +.+.++ +..+...|..-+..|..|..+|..-++....+.|+ .-|+|..+.-.+|..+...
T Consensus 79 e~~~~~~~~~~d--~~~~D~~li~a~q~~ehyeIA~Y~tL~~~A~~lG~~e~a~lL~-~~L~EE~~~~~~L~~~a~~ 152 (159)
T PF05974_consen 79 EAQELIEEFAED--PAVKDAALIAAAQKVEHYEIAAYGTLIALAKQLGDEEAAQLLE-QNLDEEEAADEKLTQLAES 152 (159)
T ss_dssp HHHHHHHT-S-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCC--chHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 000000000 123333 35778899999999999999999999999999999 8898888888888877653
No 40
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=92.01 E-value=3.2 Score=38.82 Aligned_cols=143 Identities=13% Similarity=0.164 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-----
Q 024785 92 TDDCEAAINEQIN---VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS----- 163 (262)
Q Consensus 92 s~~~e~aLNeQIn---~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~----- 163 (262)
++....+|.+|+. -|+.++.+|+..+.-|.... .+...+...+-||..|.|.+-.-+++.-.......
T Consensus 18 DP~~A~~LqeqlGG~~GElsaamqYl~Q~~~~~~~~----~~kdlL~dIatEEl~H~Emvat~I~~Ll~g~~~~~~~~~~ 93 (283)
T PF05067_consen 18 DPRFAKLLQEQLGGPFGELSAAMQYLFQSFNMRGPE----KYKDLLMDIATEELGHVEMVATMIAQLLKGAPPEEQEEAA 93 (283)
T ss_dssp -HHHHHHHCHHHHSTTSHHHHHHHHHHHHHH-SSTT----TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSSHHHHH
T ss_pred CHHHHHHHHHHhcCCcchHHHHHHHHHHhhcCCCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhhc
Confidence 5566777888875 69999999999999997642 13589999999999999998776666543221111
Q ss_pred ------------------cc-----CCC-c---cCC---cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHH
Q 024785 164 ------------------IL-----MPL-S---EFD---HAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLA 213 (262)
Q Consensus 164 ------------------I~-----~P~-~---~f~---~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~ 213 (262)
|. .|. + -|+ -...|+++--|...+..|......+..|++.+ .|+...
T Consensus 94 ~~~p~~~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~yv~~sGdl~aDL~~NiaAE~~AR~~yerL~~mT---dDpgvk 170 (283)
T PF05067_consen 94 PGDPLLAAIMGGGNPQHYIVHGGGAYPVDSNGVPWTAAYVQASGDLIADLRSNIAAEQRARLQYERLYEMT---DDPGVK 170 (283)
T ss_dssp GGGTTTGGGGCSS-SHHHHTSSSS--SB-TTS-B-BGGG----S-HHHHHHHHHHHHHHHHHHHHHHHTT------HHHH
T ss_pred ccchHHHHhhcCCCchhhhcCCCCCCccCCCCCcccchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhc---CCccHH
Confidence 10 010 0 111 01246899999999999999999999999877 799999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhcC
Q 024785 214 DFVESKYLHEQVEAIKKISEYVAQLRRVG 242 (262)
Q Consensus 214 ~FLe~~fL~EQve~ik~l~~~l~~Lrr~g 242 (262)
+.|. ..+...+-|...+..-|..|.-..
T Consensus 171 d~L~-FLl~Re~vH~~~f~~ALe~l~~~~ 198 (283)
T PF05067_consen 171 DMLS-FLLAREIVHQQQFGKALEELQENF 198 (283)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999 778888888888888887776554
No 41
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=91.23 E-value=1.4 Score=38.20 Aligned_cols=61 Identities=11% Similarity=0.123 Sum_probs=54.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhc
Q 024785 177 GDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRV 241 (262)
Q Consensus 177 ~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr~ 241 (262)
.++.+++..|+..|+...+-|.++++.+ .|..+...++ ++..++.+|.+++..++.++-.-
T Consensus 23 ~~~~e~L~~Ai~~E~eA~~fY~~lae~~---~~~~~rk~~~-~la~eE~~H~~~f~~l~~~~~~~ 83 (176)
T COG1633 23 LSIEELLAIAIRGELEAIKFYEELAERI---EDEEIRKLFE-DLADEEMRHLRKFEKLLEKLTPK 83 (176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhc---CCHhHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC
Confidence 3789999999999999999999998876 5678999999 99999999999999999887543
No 42
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=89.74 E-value=3 Score=33.88 Aligned_cols=62 Identities=13% Similarity=0.097 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 024785 178 DALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRR 240 (262)
Q Consensus 178 ~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr 240 (262)
.+.+.+...+..|......+...|..+...+.+.+..+++ ..-.+..+|.+.+.+.+..+.-
T Consensus 6 ~~~~~Ln~~la~e~~~~~~y~~~~~~~~g~~f~~l~~~~~-~~~~ee~~Had~laEri~~lGg 67 (148)
T cd01052 6 ELIELLNKAFADEWLAYYYYTILAKHVKGPEGEGIKEELE-EAAEEELNHAELLAERIYELGG 67 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCC
Confidence 4678999999999999999999999999889999999999 8888999999999998887743
No 43
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=89.44 E-value=2.1 Score=33.47 Aligned_cols=56 Identities=16% Similarity=0.244 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 181 YAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 181 eale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
++++.|+..|......|..+...+...+ +.+..++. .+-.++.+|.+.+..++..+
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~~~~-p~~~~~f~-~lA~~E~~H~~~~~~l~~~~ 56 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAKDEG-PELKELFR-RLAEEEQEHAKFLEKLLRKL 56 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH-HHHHHHHHHHHHHHHHHCHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhcc-cHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 4788999999999999999999999888 99999999 89999999999999888766
No 44
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=89.17 E-value=15 Score=32.25 Aligned_cols=131 Identities=16% Similarity=0.169 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccC--
Q 024785 94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF-- 171 (262)
Q Consensus 94 ~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f-- 171 (262)
.....|-++.+-|..|+-.=++|-..|-. .+++..-+-..+.||+.|=++.++-+.+||. .+.++.+++-.-
T Consensus 18 nl~~iL~DHA~CE~KAA~~A~~L~~rY~~----~~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi--~l~~~~~~~Ya~~L 91 (180)
T cd07910 18 NLDEILIDHAHCEKKAASSAMSLIFRYPE----KPELVEAMSDLAREELQHFEQVLKIMKKRGI--PLGPDSKDPYASGL 91 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC----cHhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCCCCHHHHHH
Confidence 56778889999999999998888666653 5789999999999999999999999999994 555555543100
Q ss_pred -CcCccCcH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcC
Q 024785 172 -DHAEKGDA--------LYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVG 242 (262)
Q Consensus 172 -~~~e~~~~--------leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr~g 242 (262)
...-++.+ +.++=.|-..| ....+|....|..+..|-. ..+..+..|-. +|+.--+..+
T Consensus 92 ~k~vR~~~p~~llD~Llv~alIEARScE--------RF~lLa~~l~D~eL~~FY~-~Ll~SEarHy~---~yl~LA~~y~ 159 (180)
T cd07910 92 RKLVRKGEPERLLDRLLVAALIEARSCE--------RFALLAPALPDPELKKFYR-GLLESEARHYE---LFLDLARKYF 159 (180)
T ss_pred HHHcccCChHHHHHHHHHHHHHHHHhHH--------HHHHHhccCCCHHHHHHHH-HHHHHHhhHHH---HHHHHHHHHc
Confidence 00000111 11222222222 2344555557999999988 67776666654 4555555544
No 45
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=88.53 E-value=17 Score=32.22 Aligned_cols=116 Identities=18% Similarity=0.186 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCcCcc-------
Q 024785 104 NVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEK------- 176 (262)
Q Consensus 104 n~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f~~~e~------- 176 (262)
.-|+.|-++|.-.+.+....+ .---.++.+++|-.|--.+-+++.+||.+|.+-. |. |.+.-.
T Consensus 51 aGE~~A~~iY~GQ~~~~r~~~-----~R~~l~em~d~E~~HL~~f~~~l~e~~vRPsll~---P~--W~~~~FalGA~a~ 120 (204)
T COG2941 51 AGELGAQAIYQGQAAVARSPE-----PRIQLKEMADEEIDHLAWFEQRLLELGVRPSLLN---PL--WYAAAFALGAGAG 120 (204)
T ss_pred hhHHHHHHHHhhHHHHHcCcc-----hHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHH---HH--HHHHHHHHHHHHh
Confidence 458999999999999887642 2238899999999999999999999999997632 11 100000
Q ss_pred -CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHH
Q 024785 177 -GDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKI 231 (262)
Q Consensus 177 -~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l 231 (262)
-+..-+|-..-+.|..+-+.|..=...- .+.|..+..-|. .|=.|+++|.+..
T Consensus 121 Llgdk~am~~teavE~vIe~Hy~~ql~~L-~~~d~~lr~~l~-qfR~DE~eH~d~A 174 (204)
T COG2941 121 LLGDKAAMGFTEAVETVIEKHYDGQLREL-PNLDAELRAILA-QFRDDELEHLDNA 174 (204)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHH-HHhhHHHHHHHHH
Confidence 0112244445555666666655422221 237889999999 8999999887654
No 46
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=88.36 E-value=9.2 Score=35.48 Aligned_cols=142 Identities=12% Similarity=0.110 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-----cc
Q 024785 92 TDDCEAAINEQI---NVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL-----QS 163 (262)
Q Consensus 92 s~~~e~aLNeQI---n~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l-----~~ 163 (262)
++...++|.+|+ .-|+.++.+|+..+.-|.. +++-..+.+.+-||..|.+.+-.-++..-..... .+
T Consensus 18 dp~~A~~lqEqlGG~~GElsaamqYl~Q~fn~r~-----~~~~dll~DI~TEEl~HlEmvat~I~~L~~ga~~e~~~~~~ 92 (277)
T COG3546 18 NPQLAKLLQEQLGGAFGELSAAMQYLFQGFNVRD-----AKYKDLLMDIGTEELSHLEMVATMINLLNKGATGEGAEEAE 92 (277)
T ss_pred ChHHHHHHHHHhCCcchHHHHHHHHHHhhcccCc-----hHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchh
Confidence 556677888887 4799999999999887763 5788999999999999999998888776554443 11
Q ss_pred cc-------------------CCCc----cCC---cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Q 024785 164 IL-------------------MPLS----EFD---HAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVE 217 (262)
Q Consensus 164 I~-------------------~P~~----~f~---~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe 217 (262)
+. .|.. -|. -...|+++-=|...+..|......+..|++++ .|+.+.+.|.
T Consensus 93 l~~s~~~~~n~~h~~~~~~g~~p~dS~G~pWta~YI~~sGnliaDlr~NiaaE~~aR~~y~rLy~mt---dDpgvrd~L~ 169 (277)
T COG3546 93 LYGSGLGGMNPHHISVLLYGAGPADSAGVPWTAAYIVASGNLIADLRSNIAAEARARLQYERLYEMT---DDPGVRDTLS 169 (277)
T ss_pred hHHhhccCCCchhhhhhccCCCCcccCCCccchhhhhccCccHHHHHHHHHHHhccceeeeeeeecC---CCccHHHHHH
Confidence 10 0100 010 01235677777777888877777777777765 7999999998
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhcC
Q 024785 218 SKYLHEQVEAIKKISEYVAQLRRVG 242 (262)
Q Consensus 218 ~~fL~EQve~ik~l~~~l~~Lrr~g 242 (262)
..|...+-|...+..-|..|+..+
T Consensus 170 -fLl~Re~~H~~~f~kAL~~l~~~~ 193 (277)
T COG3546 170 -FLLTREIAHQNAFRKALESLENEE 193 (277)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 778888888888888888887776
No 47
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=88.33 E-value=3.9 Score=33.34 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 024785 178 DALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (262)
Q Consensus 178 ~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lr 239 (262)
...+.+..++..|-.....+...+..+...+-+.+..+++ ..-.|..+|.+.+.+++..+-
T Consensus 5 ~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~~~~~f~-~~a~ee~~Ha~~lae~i~~lG 65 (153)
T cd00907 5 KVIEALNKALTGELTAINQYFLHARMLEDWGLEKLAERFR-KESIEEMKHADKLIERILFLE 65 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 4688999999999999999999999998888889999999 788888899999998888764
No 48
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=88.05 E-value=3.6 Score=32.36 Aligned_cols=58 Identities=24% Similarity=0.273 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 024785 181 YAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (262)
Q Consensus 181 eale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lr 239 (262)
+.+...+..|......+..++-.+...+-+.+..|++ ...++..++..++.+++..+-
T Consensus 2 ~~Ln~~l~~e~~~~~~y~~~~~~~~~~~~~~l~~~~~-~~a~e~~~h~~~l~e~i~~lg 59 (142)
T PF00210_consen 2 EALNEQLALELQASQQYLNMHWNFDGPNFPGLAKFFQ-DQAEEEREHADELAERILMLG 59 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHhH-HHHHHHHHHHHHHHHHHhcCC
Confidence 5788899999999999999999999888899999999 788888888888888877654
No 49
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=88.03 E-value=2.8 Score=32.67 Aligned_cols=54 Identities=24% Similarity=0.357 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 024785 182 AMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (262)
Q Consensus 182 ale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lr 239 (262)
+++.|+.+|+.....|..+...+ +|+....+++ .+-.++.+|.+.+...+..+.
T Consensus 2 ~l~~a~~~E~~~~~~Y~~~a~~~---~~~~~~~~~~-~la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 2 ILALAIKMEEEAAEFYLELAEKA---KDPELKKLFE-ELAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHC---CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 67899999999999999887654 7779999999 899999999999999998875
No 50
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=87.17 E-value=3.3 Score=37.29 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec
Q 024785 99 INEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ 162 (262)
Q Consensus 99 LNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~ 162 (262)
|...|.+|+...-.||..++--+.. .-.....-.+.-+.|||-|.....+-+|..||.|.+.
T Consensus 1 Lq~Ai~lE~atip~YL~a~ySi~~~--~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~P~l~ 62 (227)
T PF12902_consen 1 LQQAIELELATIPPYLTALYSIKPG--TNEEARNLIRSVAIEEMLHLSLAANLLNALGGSPRLT 62 (227)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHBS-T--TSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred CcHHHHHHHHHHHHHHHHHcccCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 5678999999999999777766431 2233889999999999999999999999999999886
No 51
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=86.28 E-value=7.4 Score=31.47 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024785 93 DDCEAAINEQINVEYN-VSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK 154 (262)
Q Consensus 93 ~~~e~aLNeQIn~El~-aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~ 154 (262)
..+...|...+..|.. +.-.|..++..+.. .+-...+.+|.....+|..|+..|-+.+..
T Consensus 72 ~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~--e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 72 GDTLENLKAAIAGETYEYTEMYPEFAEVAEE--EGFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677888999999986 77999999999997 589999999999999999999998776543
No 52
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=84.41 E-value=7.6 Score=31.26 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 179 ALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 179 ~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
..+.+..++..|......|......|...+.+.+++++. .--.++..|-+.+.+++..+
T Consensus 2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~~eG~~~~A~~f~-~~a~eE~~HA~~~~~~l~~i 60 (123)
T cd01046 2 LEEDLEANFKGETTEVGMYLAMARVAQREGYPEVAEELK-RIAMEEAEHAARFAELLGKV 60 (123)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHhcC
Confidence 567899999999999999999999999999999999999 77888888888887766443
No 53
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=82.69 E-value=9.4 Score=37.15 Aligned_cols=145 Identities=20% Similarity=0.235 Sum_probs=102.0
Q ss_pred cCHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCc--Cccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccc
Q 024785 91 FTDDCEAAI-NEQINVEYNVSYVYHAMFAYFDR--DNVA--LKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIL 165 (262)
Q Consensus 91 ~s~~~e~aL-NeQIn~El~aSy~YlsmAa~f~~--~~v~--L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~ 165 (262)
+++.+..+| -.-|..|-=-+| +.|-..++. |.-| -...+.|-+....||-.|+.-|-+|+.--| +|....|.
T Consensus 115 Lpd~~~v~LvgdmiTEeaLPtY--~~~Ln~~~gv~d~tg~~~~~W~~Wvr~WTAEENRHgdlL~~YLylTg-rVDm~~iE 191 (390)
T PLN00179 115 LPDDYFVVLVGDMITEEALPTY--QTMLNTLDGVRDETGASATPWARWTRAWTAEENRHGDLLNKYLYLSG-RVDMRQIE 191 (390)
T ss_pred CChhhhhhhhhcchhhhcchHH--HHHHHHhcccccccCCCCCchhhhccccccccchHHHHHHHHHhhcc-CcCHHHHH
Confidence 555554444 444555544444 444333331 2122 245889999999999999999999998754 56555554
Q ss_pred C-----CCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 024785 166 M-----PLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (262)
Q Consensus 166 ~-----P~~~f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lr 239 (262)
. -..+|+.....++...|-..-=.|+...-+-.+..++|.+.+|+.+...+. ..-.++..|+.-..+++..+=
T Consensus 192 ~t~q~li~~G~d~~~~~~py~~~vYtSFQErAT~VSH~NTarlA~~~gDp~la~icg-~IAaDE~rHe~fY~~iV~~~l 269 (390)
T PLN00179 192 KTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDAKLAKICG-TIAADEKRHETAYTRIVEKLF 269 (390)
T ss_pred HHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHH-HHhccHHHHHHHHHHHHHHHH
Confidence 3 113444322347899998888899999999999999999999999988888 788888888888887777653
No 54
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=79.83 E-value=14 Score=27.24 Aligned_cols=53 Identities=19% Similarity=0.097 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 182 AMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 182 ale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
++..++..|......+..++..+. |+.+..++. .+-.+..+|.+.+.+++..+
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~---~~~~~~~~~-~~a~~E~~H~~~l~~~~~~~ 54 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP---DPDLKDELL-EIADEERRHADALAERLREL 54 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 567788899999999998888764 899999999 78999999999999988775
No 55
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=79.72 E-value=10 Score=31.31 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 024785 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEY 151 (262)
Q Consensus 92 s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y 151 (262)
.....+.|...+..|-.+...|..++...++ +.....|...+.+|.+|...|-+.
T Consensus 99 ~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~~d-----~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 99 GESIKEMLKLDIASEKAAIAKYKRQAETIKD-----PYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4457779999999999999999999996543 678899999999999999988654
No 56
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=77.83 E-value=19 Score=27.93 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 024785 179 ALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (262)
Q Consensus 179 ~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lr 239 (262)
.+..+...+..++.....|.+..+-| .|+.+..+++ .+..+...++..|..+|..+-
T Consensus 2 ~i~~Ln~Ll~~~~d~~~~Y~~a~~~~---~~~~lk~~f~-~~~~~~~~~~~~L~~~i~~~G 58 (111)
T PF09537_consen 2 TIEALNDLLKGLHDGIEGYEKAAEKA---EDPELKSLFQ-EFAQERQQHAEELQAEIQELG 58 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----SHHHHHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 35667777777777777777666654 6899999999 899999999999998888774
No 57
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=77.11 E-value=14 Score=30.36 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024785 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK 154 (262)
Q Consensus 93 ~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~ 154 (262)
..+.++|...++.|..+...|..++..+.. .+-+..+.||..-.+++.+|...+-+++..
T Consensus 79 ~~~~~~l~~al~~E~~~~~~~~~l~~~A~~--~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~ 138 (156)
T cd01055 79 ESLLEVFEAALEHEQKVTESINNLVDLALE--EKDYATFNFLQWFVKEQVEEEALARDILDK 138 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999999999999999987 367889999999999999999888888773
No 58
>PF13668 Ferritin_2: Ferritin-like domain
Probab=74.40 E-value=18 Score=29.15 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024785 180 LYAMELTLSLEKLTNEKLLNLHKVA-----NKNHDVQLADFVESKYLHEQVEAIKKISEYVA 236 (262)
Q Consensus 180 leale~AL~lEk~v~~~l~~L~~lA-----~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~ 236 (262)
++++..||.+|....+-+.....-. ....|..+.++++ .+-.++..|++.+.+.+.
T Consensus 3 ~~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~E~~H~~~l~~~l~ 63 (137)
T PF13668_consen 3 LDILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQ-EIADQEQGHVDFLQAALE 63 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 5789999999999999998877643 3468899999999 899999999999998886
No 59
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=70.73 E-value=44 Score=29.89 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=25.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024785 126 ALKGLAKFFKESSEEEREHAEKLMEYQNK 154 (262)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHA~kLi~y~n~ 154 (262)
....|+.||++.|.=|.++|.+|-+.-..
T Consensus 20 ~~~el~~f~keRa~iE~eYak~L~kLak~ 48 (239)
T cd07647 20 MCKELEDFLKQRAKAEEDYGKALLKLSKS 48 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35679999999999999999999988755
No 60
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=69.04 E-value=69 Score=26.95 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccc----------
Q 024785 96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIL---------- 165 (262)
Q Consensus 96 e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~---------- 165 (262)
...|.+....|-++.-.--.|+. ....|-+..-|..+..|-+.|..+|-+=+...|..|.-..-+
T Consensus 5 ~~~L~d~y~aE~Q~~~al~~m~~-----~a~~peLk~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~c~~m~gli~e~~ 79 (147)
T cd07909 5 VHELRDLYSAEKQLVKALPKMAK-----AATSEELKEAFESHLEETEGQVERLEQIFESLGEKPEGKKCKAMEGLIKEAE 79 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCcchHHHHHHHHHH
Confidence 34445555555555444445542 145789999999999999999999999999999887543311
Q ss_pred CCCccCCcCccCcHHHHH--HHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 024785 166 MPLSEFDHAEKGDALYAM--ELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKIS 232 (262)
Q Consensus 166 ~P~~~f~~~e~~~~leal--e~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~ 232 (262)
.-..++.. +.++++. -.+...|..-...|..|...|..-++......|+ .-|+|...--++|.
T Consensus 80 ~~~~~~~~---~~v~Da~li~aaq~vEHyEIA~YgtL~~~A~~lG~~e~a~lL~-~~L~EE~~~d~~lt 144 (147)
T cd07909 80 ELIEETGD---SAVLDAALIAAAQKVEHYEIAGYGTLRALAKLLGLDDAADLLQ-ETLDEEKATDRKLT 144 (147)
T ss_pred HHHhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHH
Confidence 00011111 2456776 7888999999999999999999999999999999 67766655555544
No 61
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=66.50 E-value=24 Score=38.41 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024785 177 GDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQ 237 (262)
Q Consensus 177 ~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~ 237 (262)
.++.++++.|+.+|+...+-|..+.+. .+|+.+.+++. ++-+++.+|.+.+.++...
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~---a~~~~~K~lF~-~LA~eE~~H~~~l~~~~~~ 915 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKE---TSDPVLKELFL-KFAGMEQEHMATLARRYHA 915 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 368999999999999999999877664 48999999999 8999999999999887653
No 62
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=64.68 E-value=47 Score=23.46 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 024785 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGG 157 (262)
Q Consensus 98 aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG 157 (262)
.++.-++.+=.++..|...+.=+.+ |.+-..|.....++..++..+.+|++++|=
T Consensus 5 i~~d~L~~~K~~~~~y~~a~~E~~n-----p~lR~~l~~~~~~~~~~~~~l~~~m~~kGw 59 (64)
T PF07875_consen 5 IANDLLNSEKAAARNYATAALECAN-----PELRQILQQILNECQQMQYELFNYMNQKGW 59 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4566677777888889888876664 679999999999999999999999999994
No 63
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=63.93 E-value=85 Score=28.25 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=27.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 024785 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRGG 157 (262)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG 157 (262)
...-|++||++.|.=|.++|..|.+...+-.+
T Consensus 20 ~~~el~~f~keRa~IEe~Yak~L~kLakk~~~ 51 (261)
T cd07648 20 AVKELADFLRERATIEETYSKALNKLAKQASN 51 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35669999999999999999999998876554
No 64
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=63.29 E-value=1.1e+02 Score=28.02 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=26.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 024785 127 LKGLAKFFKESSEEEREHAEKLMEYQNKRGG 157 (262)
Q Consensus 127 L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG 157 (262)
...|+.||+++|.=|.++|..|.+.-..-++
T Consensus 28 ~kel~~f~keRa~iEe~Yak~L~kLak~~~~ 58 (269)
T cd07673 28 TKELSDFIRERATIEEAYSRSMTKLAKSASN 58 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4568999999999999999999988876543
No 65
>PF14530 DUF4439: Domain of unknown function (DUF4439); PDB: 2IB0_B.
Probab=60.92 E-value=94 Score=25.65 Aligned_cols=118 Identities=19% Similarity=0.173 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCcC-cc
Q 024785 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHA-EK 176 (262)
Q Consensus 98 aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f~~~-e~ 176 (262)
+|...+..|+.+.|.|=..+.+...+ ...--.....+.|...+.++..+..+|+.+.. |...|.-+ +.
T Consensus 1 AL~~al~aE~aAvy~ygv~~a~~~~~------~r~~~~~~~~~HR~rRd~l~~~l~~~g~~~p~-----~~aaY~lP~~v 69 (131)
T PF14530_consen 1 ALQAALAAEHAAVYGYGVAAARLDGD------RRAAARAALAAHRARRDALAAALRAAGATPPP-----PEAAYQLPFPV 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-GG------GHHHHHHHHHHHHHHHHHHHHHHHHTT------------SS---SS--
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-----CCCCCCCCCCC
Confidence 57788999999999999999988753 34455666777888999999999999988743 33333321 34
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHH
Q 024785 177 GDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKK 230 (262)
Q Consensus 177 ~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~ 230 (262)
.|...+...+..+|..+...+..+. ...|.....|--....+--+....|
T Consensus 70 ~d~~sa~~la~~lE~~~a~aw~~lv----~a~~~~~R~~av~aL~~aA~ra~~W 119 (131)
T PF14530_consen 70 TDPASAAALAAALEDDCAAAWRALV----AATDPALRRFAVDALTEAAVRAARW 119 (131)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHH----H--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH----hcCChhHHHHHHHHHHHHHHHHHHh
Confidence 6889999999999999999998887 2367788877774444444444433
No 66
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=58.09 E-value=1.4e+02 Score=26.84 Aligned_cols=95 Identities=19% Similarity=0.194 Sum_probs=55.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 024785 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKV-A 204 (262)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f~~~e~~~~leale~AL~lEk~v~~~l~~L~~l-A 204 (262)
....++.||++.+.=|...|.+|.+.-..-.|.+.+ |+...++... +.-++.+-++|.. +
T Consensus 20 ~~~el~~fl~ERa~IEe~Yak~L~klak~~~~~~e~---------------Gtl~~sw~~~----~~e~E~~a~~H~~la 80 (233)
T cd07649 20 MQKEMAEFIRERIKIEEEYAKNLSKLSQSSLAAQEE---------------GTLGEAWAQV----KKSLADEAEVHLKFS 80 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC---------------ChHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 356799999999999999999999987543332211 3333333222 2233444444432 2
Q ss_pred hhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhc
Q 024785 205 NKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRV 241 (262)
Q Consensus 205 ~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr~ 241 (262)
..-.+ ....=|. .|..+|.+..+++.+.+..+.+.
T Consensus 81 ~~L~~-ev~~~l~-~f~~~~~k~~k~~e~~~~k~~K~ 115 (233)
T cd07649 81 SKLQS-EVEKPLL-NFRENFKKDMKKLDHHIADLRKQ 115 (233)
T ss_pred HHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 1112244 46667888888888777766544
No 67
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=57.02 E-value=1.4e+02 Score=26.43 Aligned_cols=32 Identities=34% Similarity=0.484 Sum_probs=27.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 024785 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRGG 157 (262)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG 157 (262)
.+..++.||++.|.=|.++|.+|-+.-..-++
T Consensus 20 ~~~el~~f~keRa~iE~eYak~L~kLakk~~~ 51 (236)
T cd07651 20 TLEELRSFYKERASIEEEYAKRLEKLSRKSLG 51 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 46679999999999999999999987766554
No 68
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=56.16 E-value=93 Score=26.27 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=51.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 024785 91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKR 155 (262)
Q Consensus 91 ~s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~R 155 (262)
++.++.+.|...|..|-.|.-.|..++...++ |++-+-+.....+|..|.+.|-+.+.+.
T Consensus 96 ~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~D-----p~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 96 SSGNLVADLRSNIAAESRARLTYERLYEMTDD-----PGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788899999999999999999999998863 4566667778889999999999888654
No 69
>PRK10635 bacterioferritin; Provisional
Probab=55.97 E-value=1.1e+02 Score=25.93 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=51.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024785 91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN 153 (262)
Q Consensus 91 ~s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n 153 (262)
..+.+.+.|..-+..|..+.-.|..+..+|+. .+=+.-..+|...-.+|-+|+..|-..+.
T Consensus 79 ~g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~--~~D~~s~~ll~~iL~dEe~H~~~le~~l~ 139 (158)
T PRK10635 79 IGEDVEEMLRSDLRLELEGAKDLREAIAYADS--VHDYVSRDMMIEILADEEGHIDWLETELD 139 (158)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999996 34566778888888899999988766544
No 70
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=55.77 E-value=1.3e+02 Score=27.25 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=24.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024785 127 LKGLAKFFKESSEEEREHAEKLMEYQN 153 (262)
Q Consensus 127 L~GfAkfF~~~S~EEreHA~kLi~y~n 153 (262)
..-|+.||+++|.=|.++|..|.+.-.
T Consensus 21 ~kel~~flkeRa~IEe~Yak~L~klak 47 (261)
T cd07674 21 TKELADFVRERAAIEETYSKSMSKLSK 47 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445999999999999999999998874
No 71
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=54.49 E-value=1e+02 Score=25.64 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 178 DALYAMELTLSLEKLTNEKLLNLHKVANKN--HDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 178 ~~leale~AL~lEk~v~~~l~~L~~lA~~~--~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
.+.+++...+..|......+..+...|... +-+.++.|+. .--.|+.+|-.++-+++...
T Consensus 3 ~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~-~~a~eE~~HA~~l~~~i~~r 64 (161)
T cd01056 3 ECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFR-KLSDEEREHAEKLIKYQNKR 64 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999877 8889999888 56666677777666666554
No 72
>KOG4061 consensus DMQ mono-oxygenase/Ubiquinone biosynthesis protein COQ7/CLK-1/CAT5 [General function prediction only]
Probab=52.56 E-value=1.4e+02 Score=26.51 Aligned_cols=117 Identities=19% Similarity=0.263 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCc---cCCcCccC---
Q 024785 104 NVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS---EFDHAEKG--- 177 (262)
Q Consensus 104 n~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~---~f~~~e~~--- 177 (262)
.-||.|-++|--.-+...+-. ++.-.++.=++|.+|-..|-+++.++--+|.+- .|.- .|. ..-|
T Consensus 58 AGElGAdrIYaGQ~avL~~~~-----vgpvi~hmWdqEk~Hl~tf~~l~~k~rVrpT~l---~P~w~vagfa-lGaGTAL 128 (217)
T KOG4061|consen 58 AGELGADRIYAGQMAVLQGTS-----VGPVIKHMWDQEKEHLKTFENLALKHRVRPTVL---TPLWNVAGFA-LGAGTAL 128 (217)
T ss_pred ccccccchhhhchhhhhcCCC-----chhHHHHHHHHHHHHHHHHHHHHHHccCCchhh---hhHHHHHHHH-hccchhh
Confidence 458999999987666665532 667777788889999999999999999887652 2320 110 0001
Q ss_pred -cHHHHHHHHHHHHHHHHHHHHH-HHHHHhh--CCCHHHHHHHHHHhHHHHHHHHHH
Q 024785 178 -DALYAMELTLSLEKLTNEKLLN-LHKVANK--NHDVQLADFVESKYLHEQVEAIKK 230 (262)
Q Consensus 178 -~~leale~AL~lEk~v~~~l~~-L~~lA~~--~~D~~t~~FLe~~fL~EQve~ik~ 230 (262)
....||.+..+.|--+-..|++ |-+++.+ +.+-.+...|. .|=+|+.||.+.
T Consensus 129 lg~eaAMACT~AVEtvIg~HYNdQlr~l~~~~pe~~kell~~i~-~fRDeEleHhdt 184 (217)
T KOG4061|consen 129 LGKEAAMACTEAVETVIGGHYNDQLRELAEDDPEEHKELLSTIT-KFRDEELEHHDT 184 (217)
T ss_pred hChHHHHHHHHHHHHHHHHhhhHHHHHHHHhCcHhHHHHHHHHH-HHhHHHHHhhcc
Confidence 3457888888888888777765 4445543 35556677777 788888777654
No 73
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=52.05 E-value=61 Score=26.45 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 024785 180 LYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (262)
Q Consensus 180 leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lr 239 (262)
.+++..|++.|+....-+..+++.+. ....+. .+...+.+|++.+..++.+..
T Consensus 2 ~~~L~~Ale~Ek~a~~~Y~~~~~k~~------~~~~F~-~la~~E~~H~~~l~~L~~~~~ 54 (135)
T cd01048 2 IAALLYALEEEKLARDVYLALYEKFG------GLRPFS-NIAESEQRHMDALKTLLERYG 54 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc------CcchHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 36889999999999999999999873 233444 578899999999998887654
No 74
>PRK10304 ferritin; Provisional
Probab=51.35 E-value=1.3e+02 Score=25.50 Aligned_cols=60 Identities=10% Similarity=0.205 Sum_probs=50.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 178 DALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 178 ~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
.+..++...+..|-.....|..+...|...+=+.++.|+. .=-.|+.+|-.++-+++...
T Consensus 5 ~i~~~Ln~qin~El~As~~Yl~ma~~~~~~gl~g~A~~f~-~qs~EE~~HA~kl~~~i~~r 64 (165)
T PRK10304 5 EMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLR-RHAQEEMTHMQRLFDYLTDT 64 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999899998888 55666677777777776654
No 75
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=47.26 E-value=1.5e+02 Score=24.88 Aligned_cols=56 Identities=21% Similarity=0.228 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 024785 180 LYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (262)
Q Consensus 180 leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lr 239 (262)
++-++.++..|+...+.+..+...| .|+.+..-|+ ..+++-.++++.|..++..+-
T Consensus 7 ~~~L~d~y~aE~q~~~~l~~~~~~a---~~~~L~~~l~-~h~~eT~~q~~rLe~~~~~lg 62 (159)
T PF05974_consen 7 IDELRDLYSAEKQLLKALPKLAEAA---SSPELKAALE-EHLEETEQQIERLEQIFEALG 62 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----SSHHHHHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC---CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHcc
Confidence 5677888999999999888887765 5699999999 789888888888888877664
No 76
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=47.21 E-value=1.9e+02 Score=26.00 Aligned_cols=95 Identities=19% Similarity=0.129 Sum_probs=51.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024785 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVAN 205 (262)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~ 205 (262)
....++.||++.|.=|.+.|..|.+.-....... . . .+ |+...++...+ .-++.+-.+|..-.
T Consensus 20 ~ckel~~f~kERa~IE~~YAK~L~kLa~k~~k~~--~---~-------~~-Gtl~~aw~~~~----~e~e~~a~~H~~la 82 (239)
T cd07658 20 FCKELATVLQERAELELNYAKGLSKLSGKLSKAS--K---S-------VS-GTLSSAWTCVA----EEMESEADIHRNLG 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c---c-------CC-CcHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3567999999999999999999998876431100 0 0 01 23344443222 12233344443322
Q ss_pred hCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 206 KNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 206 ~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
+.=.-.+..-|. .|..+|.+.-+.+..-+..+
T Consensus 83 ~~L~~ev~~~l~-~~~~~~~k~rK~~~~~~~k~ 114 (239)
T cd07658 83 SALTEEAIKPLR-QVLDEQHKTRKPVENEVDKA 114 (239)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 211113344566 67777777766666544433
No 77
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=45.54 E-value=2.5e+02 Score=25.84 Aligned_cols=136 Identities=20% Similarity=0.201 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcCcc--cch------------------------------------hHHH
Q 024785 92 TDDCEAAINEQINVEYNVSYVYHAM-FAYFDRDNV--ALK------------------------------------GLAK 132 (262)
Q Consensus 92 s~~~e~aLNeQIn~El~aSy~Ylsm-Aa~f~~~~v--~L~------------------------------------GfAk 132 (262)
...+...|-++.+-|..|+..=++| ..|..+.+. .|- .+..
T Consensus 25 ~~nl~~lL~DHa~CE~KAA~tAm~li~rY~~~~~~~~~ll~~~~py~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~eLv~ 104 (240)
T PF06175_consen 25 PANLPTLLIDHANCEKKAAQTAMSLIRRYAVDKESGQALLAWLKPYEDFVYRKDGDIQKNQLSKSLQPKSHYPEKEELVD 104 (240)
T ss_dssp TH--HHHHHHHHHHHHHHHHHHHHHHHHTT---------------------------------------------HHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHH
Confidence 4567788999999999999888887 455422111 122 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcc------CCcCccCc-----HHHHHHHHHHHHHHHHHHHHHHH
Q 024785 133 FFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSE------FDHAEKGD-----ALYAMELTLSLEKLTNEKLLNLH 201 (262)
Q Consensus 133 fF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~------f~~~e~~~-----~leale~AL~lEk~v~~~l~~L~ 201 (262)
-+-..+.||+.|=++.++-+.+|| +.+.++.+++-. ....+..- ++.++=.|...| ...
T Consensus 105 ~Ms~LarEEL~HFeqVl~im~~RG--i~l~~~~~d~Ya~~L~k~vR~~ep~~lvDrLLv~AlIEARSCE--------RF~ 174 (240)
T PF06175_consen 105 KMSRLAREELHHFEQVLEIMKKRG--IPLGPDRKDRYAKGLRKHVRKGEPERLVDRLLVGALIEARSCE--------RFA 174 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-----------SHHHHHHTTS-SSTTHHHHHHHHHHHHHHHHHHH--------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--CCCCCCCcCHHHHHHHHhccCCchHhHHHHHHHHHhHhhhhHH--------HHH
Confidence 345679999999999999999999 445555543210 00111111 112222222233 234
Q ss_pred HHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcC
Q 024785 202 KVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVG 242 (262)
Q Consensus 202 ~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr~g 242 (262)
.+|... |..+..|-. .++..+..|-. +++.-.+...
T Consensus 175 lLa~~l-D~eL~~FY~-~Ll~SEArHy~---~yl~LA~~y~ 210 (240)
T PF06175_consen 175 LLAEHL-DEELAKFYR-SLLRSEARHYQ---DYLKLARQYF 210 (240)
T ss_dssp HHGGGS--HHHHHHHH-HHHHHHHHHHH---HHHHHHCCCS
T ss_pred HHHHhh-CHHHHHHHH-HHHHHHhhHHH---HHHHHHHHHC
Confidence 456566 999999999 78877777654 4454444443
No 78
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=43.87 E-value=1.9e+02 Score=24.11 Aligned_cols=34 Identities=32% Similarity=0.370 Sum_probs=29.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Q 024785 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV 159 (262)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v 159 (262)
-+..++.||++.|.=|.++|.+|-+.-..-.+.+
T Consensus 15 ~~~e~~~f~keRa~iE~eYak~L~kLak~~~~~~ 48 (191)
T cd07610 15 LLKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKP 48 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4667999999999999999999999888766654
No 79
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=42.87 E-value=2.9e+02 Score=25.87 Aligned_cols=141 Identities=11% Similarity=0.062 Sum_probs=82.9
Q ss_pred cCHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee-eecccc
Q 024785 91 FTDDCEAAINEQI----NVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV-KLQSIL 165 (262)
Q Consensus 91 ~s~~~e~aLNeQI----n~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v-~l~~I~ 165 (262)
++++-.+.|...+ ..|+.+......++.++- =+++..-+.-++-+|..||+.+..|-...++.. .+. ..
T Consensus 93 ld~~w~~~l~~~l~p~~~~E~ga~~~~a~~~r~~~-----~~~i~n~~~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~-~~ 166 (304)
T cd01058 93 LSPEWREFLARYLGPLRHVEHGLQMANAYVAQYAP-----STTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFD-GD 166 (304)
T ss_pred CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc-----hHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCC-ch
Confidence 4555544444443 345544333333333332 234566677789999999999997766776642 221 11
Q ss_pred CCCccC-CcCccCcHHHHHHHHH--------------HHHHHHHHH-HHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHH
Q 024785 166 MPLSEF-DHAEKGDALYAMELTL--------------SLEKLTNEK-LLNLHKVANKNHDVQLADFVESKYLHEQVEAIK 229 (262)
Q Consensus 166 ~P~~~f-~~~e~~~~leale~AL--------------~lEk~v~~~-l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik 229 (262)
.....| .++.|..+.+.+|..+ ..|-.++.. +..+.+.|..++|..|..++. ....+..++.+
T Consensus 167 ~~k~~W~~dp~Wq~~R~~~E~~~~~~Dw~E~~va~nlv~e~l~~~l~~~~~~~~Aa~nGD~~t~~l~~-s~q~d~~Rh~~ 245 (304)
T cd01058 167 AAKEAWEEDPAWQGLRELVEKLLVTYDWGEAFVAQNLVFDPLVGELVRRELDRLAASNGDTLTPLLTE-FMLDDAQRHRR 245 (304)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHH-HHHHHHHHHHH
Confidence 111111 2334444445554443 334444433 345778888999999998888 67788888888
Q ss_pred HHHHHHHHH
Q 024785 230 KISEYVAQL 238 (262)
Q Consensus 230 ~l~~~l~~L 238 (262)
+....+.-+
T Consensus 246 ~~~alvk~l 254 (304)
T cd01058 246 WTDALVKTA 254 (304)
T ss_pred HHHHHHHHH
Confidence 888777644
No 80
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=39.41 E-value=2.3e+02 Score=23.78 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 180 LYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 180 leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
++-++.++..|+...+.+.++.+. .+++.+.+-|+ .=+.+=.++++.|..++..+
T Consensus 5 ~~~L~d~y~aE~Q~~~al~~m~~~---a~~peLk~~l~-~H~~eT~~qi~rLe~if~~l 59 (147)
T cd07909 5 VHELRDLYSAEKQLVKALPKMAKA---ATSEELKEAFE-SHLEETEGQVERLEQIFESL 59 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 567888999999999998888754 48999999999 66777777777777776665
No 81
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=39.13 E-value=1.9e+02 Score=22.88 Aligned_cols=52 Identities=10% Similarity=0.042 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 183 MELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 183 le~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
+...+..|+....-|..+...+ +|+.....+. ..-+++.+|.+.+..++..+
T Consensus 3 ~~~~~~~E~~~~~~Y~~la~~~---~~~~~k~~f~-~lA~~E~~H~~~~~~~~~~~ 54 (125)
T cd01044 3 LRKFQKDEITEAAIYRKLAKRE---KDPENREILL-KLAEDERRHAEFWKKFLGKR 54 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Confidence 4467788988888888777654 7888999999 88899999999988887664
No 82
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1.14.13.7 from EC) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (1.14.13.25 from EC) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes, alicyclic, aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (1.14.13 from EC), which hydroxylates toluene to form P-cresol.; GO: 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 3N20_B 3RNA_B 3N1X_B 3RNC_B 3RNG_B 3RNF_B 3N1Z_B 3RN9_B 3N1Y_B 3RNB_B ....
Probab=39.07 E-value=2.8e+02 Score=24.70 Aligned_cols=136 Identities=11% Similarity=0.088 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCC-cC
Q 024785 96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFD-HA 174 (262)
Q Consensus 96 e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f~-~~ 174 (262)
...+.---..|+.+...-..++.+.-.. .+...+- -++-+|..|+..+.-++....+...=..... ...|. .+
T Consensus 76 ~~~~~~~~~~E~ga~~~~a~~~r~~~~~--~i~n~~~---f~a~DelR~~q~~~~~~~~~~~~~~~~~~~~-k~~w~~~p 149 (233)
T PF02332_consen 76 KRHLGPLRHAEYGAQMASAYIARFAPGT--AIRNAAT---FQAMDELRHAQRQALLLKELAGAYPDFAGAA-KEAWLNDP 149 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-SSH--HHHHHHH---HHHHHHHHHHHHHHHHHHHHHCHCCCSCCCT-HHHHHHSH
T ss_pred HHHcCCcchHHHHHHHHHHHHHhhcCcH--HHHHHHH---HHHhHHHHHHHHHHHHHhhhhhhCcccChHH-HHHHhhCc
Confidence 3334444467777777766666666552 3443333 3888899999999977776533221111000 11010 11
Q ss_pred ccCcHHHH--------------HHHHHHHHHHHHHH-HHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 175 EKGDALYA--------------MELTLSLEKLTNEK-LLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 175 e~~~~lea--------------le~AL~lEk~v~~~-l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
.|..+... +...|..|-.++.. +.++.+.|..++|..+..++. .+-.+..++.++....+..+
T Consensus 150 ~wq~~R~~vE~~~~~~Dw~E~~va~nlv~e~l~~~l~~~~~~~~A~~nGD~~~~~l~~-~~q~d~~r~~~~~~al~~~~ 227 (233)
T PF02332_consen 150 AWQPLRRLVEDLLVTYDWFEAFVALNLVFEPLFTNLLFVEFDRLAAANGDFLTPTLTS-SIQSDEARHMRWGDALFKMA 227 (233)
T ss_dssp HHHHHHHHHHHHTTSSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 12222222 23334456655554 455778899999999998888 67777888888877665443
No 83
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=37.54 E-value=2.9e+02 Score=24.39 Aligned_cols=34 Identities=35% Similarity=0.302 Sum_probs=28.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Q 024785 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV 159 (262)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v 159 (262)
-+..|..||++.|.=|.++|.+|-+.-..-.++.
T Consensus 20 ~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~ 53 (251)
T cd07653 20 FLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKK 53 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4677999999999999999999998877654443
No 84
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=37.41 E-value=3.1e+02 Score=24.76 Aligned_cols=34 Identities=29% Similarity=0.359 Sum_probs=28.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Q 024785 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV 159 (262)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v 159 (262)
-+..+..||++.|.=|.++|.+|-+...+-.+.+
T Consensus 20 ~~~el~~f~kERa~IE~~Yak~L~kLakk~~~~~ 53 (258)
T cd07655 20 LCDDLMKMVQERAEIEKAYAKKLKEWAKKWRDLI 53 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4567999999999999999999999887755444
No 85
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=37.38 E-value=1.5e+02 Score=20.89 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024785 180 LYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVA 236 (262)
Q Consensus 180 leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~ 236 (262)
.+.+...|..+|.....+..... +..++.++..|. ..+.+..+.-.++-++..
T Consensus 3 ~~i~~d~L~~~K~~~~~y~~a~~---E~~np~lR~~l~-~~~~~~~~~~~~l~~~m~ 55 (64)
T PF07875_consen 3 KDIANDLLNSEKAAARNYATAAL---ECANPELRQILQ-QILNECQQMQYELFNYMN 55 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHCCHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34667788889888887765554 558999999999 788887777777766654
No 86
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=35.91 E-value=1.7e+02 Score=24.03 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=31.2
Q ss_pred HHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 024785 203 VANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (262)
Q Consensus 203 lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lr 239 (262)
.|.+..|+.+..+++ .|..+-...+.+|..+|..+-
T Consensus 22 aae~v~~~~lk~~f~-~~~~~~~~~~~eL~~~v~~lG 57 (139)
T TIGR02284 22 SAEEVKDPELATLFR-RIAGEKSAIVSELQQVVASLG 57 (139)
T ss_pred HHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhC
Confidence 344668999999999 899999999999999888875
No 87
>PRK13456 DNA protection protein DPS; Provisional
Probab=35.79 E-value=2.7e+02 Score=24.60 Aligned_cols=61 Identities=11% Similarity=-0.031 Sum_probs=44.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 177 GDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 177 ~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
..+++.+..|++.|-...=.|...+..+.--.=.....|++ .=..|...|-+.+.+-|.+|
T Consensus 19 ~~li~lLn~AlA~E~~a~~~Y~~~a~~~~G~~~e~V~e~le-~a~~EEl~HA~~lAeRI~qL 79 (186)
T PRK13456 19 DKLVELLVKNAAAEFTTYYYYTILRAHLIGLEGEGLKEIAE-DARLEDRNHFEALVPRIYEL 79 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999988888888888887555456668888 45555556766666555554
No 88
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=35.35 E-value=3.5e+02 Score=24.68 Aligned_cols=106 Identities=12% Similarity=0.169 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCC---------CccCCcCccCcHHHHHHHHHHHHHHHHHHHH
Q 024785 128 KGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMP---------LSEFDHAEKGDALYAMELTLSLEKLTNEKLL 198 (262)
Q Consensus 128 ~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P---------~~~f~~~e~~~~leale~AL~lEk~v~~~l~ 198 (262)
.....|+.....||..|+..+.++++.-|-.-.+.+.+.+ ....- ..+...+-.+-.++-.|..+...+.
T Consensus 112 ~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~lv~Ee~i~~~~~ 190 (304)
T PF11583_consen 112 DDAKRYALTEIADEARHSLMFARAINRTGRRRGLAPLPPPYPPRRLLRRLARLL-PPWERGLLFFAFALVAEEIIDAYQR 190 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S--HHHHHHHHHHHTS--SHHHHHHHHHHHHHHHHHSBHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCchHHHHHHHHHhc-ccccchHHHHHHHHHHHHHHHHHHH
Confidence 4467888899999999999999999998811111111100 00000 1111233455566667765555444
Q ss_pred HHHHHHhhC-CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 199 NLHKVANKN-HDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 199 ~L~~lA~~~-~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
.+ +.+. -+|.+..... --+.|+..|+.-....+...
T Consensus 191 ~~---~~D~~iqP~~r~v~~-iH~~DEaRHi~f~~~~l~~~ 227 (304)
T PF11583_consen 191 EI---ARDETIQPLVRQVMR-IHVRDEARHIAFAREELRRV 227 (304)
T ss_dssp HH---HT-SSS-HHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred Hh---hcCCCCChHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33 3332 4677777666 56778889988877776544
No 89
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=35.32 E-value=2.2e+02 Score=24.66 Aligned_cols=60 Identities=13% Similarity=0.147 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 178 DALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 178 ~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
...+-|+.++.-|-.....|.-..++|.+++++..+..+. ..-.++..|-+.+...+..+
T Consensus 4 ~t~~~L~~aF~GEs~a~~rY~~~A~~A~~eG~~~va~lfr-~iA~~E~~HA~~~~~~l~~~ 63 (166)
T COG1592 4 ETEENLRKAFAGESMAVMRYLIFAKVAEEEGYPEIARLFR-AIAEAEAVHAKNHLKLLGKL 63 (166)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHhccc
Confidence 3567788999999999999999999999999999999888 66667777766665555543
No 90
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=34.88 E-value=2.6e+02 Score=22.98 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024785 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN 153 (262)
Q Consensus 92 s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n 153 (262)
...+.+.+-..+..|-.++..|..+...+.. .+=++...+|.....+|.+|+..|=.++.
T Consensus 80 ~~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~--~~D~~t~~ll~~~i~eee~h~~~l~~~l~ 139 (157)
T TIGR00754 80 GETVREMLEADLALELDVLNRLKEAIAYAEE--VRDYVSRDLLEEILEDEEEHIDWLETQLE 139 (157)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567799999999999999999999988865 46688999999999999999998877765
No 91
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=33.86 E-value=3.6e+02 Score=24.37 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=54.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 024785 127 LKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKV-AN 205 (262)
Q Consensus 127 L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f~~~e~~~~leale~AL~lEk~v~~~l~~L~~l-A~ 205 (262)
..-+..||++.+.=|.++|.+|.+.-.+-+|...+ |+...++...+ .| +..+-++|.. +.
T Consensus 21 c~el~~f~keRa~iE~~Yak~L~kl~kk~~~~~e~---------------gTl~~a~~~~~-~e---~e~~a~~H~~ia~ 81 (242)
T cd07671 21 CKDVEELLKQRAQAEERYGKELVQIARKAGGQTEI---------------NTLKASFDQLK-QQ---IENIGNSHIQLAG 81 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc---------------hHHHHHHHHHH-HH---HHHHHHHHHHHHH
Confidence 44588999999999999999999998876653321 34455543332 12 2233333332 22
Q ss_pred hCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 024785 206 KNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (262)
Q Consensus 206 ~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lr 239 (262)
.-.+- .. -|+ .|...|-+.-|.+.+.+..+.
T Consensus 82 ~L~~~-~~-~l~-~f~~~qke~rK~~e~~~eK~q 112 (242)
T cd07671 82 MLREE-LK-SLE-EFRERQKEQRKKYEAVMERVQ 112 (242)
T ss_pred HHHHH-HH-HHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 22221 22 255 677778777777776665553
No 92
>PF11860 DUF3380: Protein of unknown function (DUF3380); InterPro: IPR024408 Proteins in this entry including lysozyme from Enterobacteria phage PRD1 [, ].
Probab=33.31 E-value=86 Score=27.26 Aligned_cols=59 Identities=12% Similarity=0.227 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 024785 96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG 156 (262)
Q Consensus 96 e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RG 156 (262)
...||+.-.++=.+.=.+--|++++.. .|++-...|+.....-|.+|-+-|++||...+
T Consensus 77 A~~ld~~AAl~SaSWG~fQIMGfn~~~--~Gy~sv~~fv~am~~se~~Ql~af~~Fi~~~~ 135 (175)
T PF11860_consen 77 ARALDEEAALESASWGLFQIMGFNWKA--LGYASVEEFVEAMCESEAAQLDAFVRFIKANP 135 (175)
T ss_pred HHhhCHHHHHHHhhhhHHHHHHHHHHH--cCCCCHHHHHHHHHhCHHHHHHHHHHHHHcCH
Confidence 456777778888888889999999987 79999999999999999999999999998855
No 93
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=31.75 E-value=2e+02 Score=20.86 Aligned_cols=28 Identities=39% Similarity=0.553 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024785 127 LKGLAKFFKESSEEEREHAEKLMEYQNK 154 (262)
Q Consensus 127 L~GfAkfF~~~S~EEreHA~kLi~y~n~ 154 (262)
+.-+.+||+++|.=|.++|.+|-+-..+
T Consensus 25 ~~~~~~f~~~Ra~iE~eYak~L~kL~~~ 52 (87)
T smart00055 25 LEDLKKFIRERAKIEEEYAKKLQKLSKK 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4559999999999999999999988765
No 94
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=31.74 E-value=3e+02 Score=23.72 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 024785 181 YAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (262)
Q Consensus 181 eale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lr 239 (262)
.+|.-.-+-|-....-|..-..++.. |+.+..+|+ ++.+++.+|..++.+.+..++
T Consensus 5 r~lRVdHAGE~~A~~iY~gQ~~~~~~--~~~~~~~l~-~~~~~E~~Hl~~f~~~l~~~~ 60 (172)
T PF03232_consen 5 RILRVDHAGEVGAVRIYRGQLAVARR--DPELRPFLK-EMAEEEKDHLAWFEQLLPELR 60 (172)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHCC--CHHHHHHHH-HHHHHHHHHHHHHHHHhHHcC
Confidence 45555666666655555544444432 999999999 999999999999999999874
No 95
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.74 E-value=4.4e+02 Score=24.41 Aligned_cols=122 Identities=17% Similarity=0.178 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccC
Q 024785 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF 171 (262)
Q Consensus 92 s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f 171 (262)
..--.+.|..-...|++|.+.=|-.++-|.. +.+.-+-.| .+-+.||-.|=..+-+++...|-+ ..+.+.-.
T Consensus 73 ~~g~aallHAiAHIEfNAInLaLDa~~RF~~--~p~~F~~dW-m~VA~EE~~HF~Ll~~~L~~LG~~--YGDfpaHd--- 144 (268)
T COG2833 73 THGRAALLHAIAHIEFNAINLALDAVYRFAP--LPLQFYDDW-MRVADEEAKHFRLLRERLKSLGYD--YGDFPAHD--- 144 (268)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhcC--CcHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCC--cCCCcccc---
Confidence 3445777888889999999999999999984 566544444 456899999999999999999944 33333322
Q ss_pred CcCccCcHHHHHHH---HHHHHHHHHHHHHH---------H-HHHHhhCCCHHHHHHHHHHhHHHHHHHHH
Q 024785 172 DHAEKGDALYAMEL---TLSLEKLTNEKLLN---------L-HKVANKNHDVQLADFVESKYLHEQVEAIK 229 (262)
Q Consensus 172 ~~~e~~~~leale~---AL~lEk~v~~~l~~---------L-~~lA~~~~D~~t~~FLe~~fL~EQve~ik 229 (262)
...+|.+. .+..-..+...+.+ | .+++ +.+|..++..|+ -.+.+++.|++
T Consensus 145 ------gLw~~a~~T~~dl~~RmalVprvLEARGLDatP~l~aK~~-~~gD~~~~~iLd-IIlrDEigHVa 207 (268)
T COG2833 145 ------GLWQMAEATANDLLARMALVPRVLEARGLDATPSLRAKLA-ETGDSEAAAILD-IILRDEIGHVA 207 (268)
T ss_pred ------cHHHHHHHhhcCHHHHhhhhhhHHhhccCCCCHHHHHHHH-HcCchHHHHHHH-HHHhcccccee
Confidence 12222211 11111111112221 1 1223 569999999999 89999999884
No 96
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=30.73 E-value=2.5e+02 Score=23.71 Aligned_cols=61 Identities=7% Similarity=0.072 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcC
Q 024785 178 DALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVG 242 (262)
Q Consensus 178 ~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr~g 242 (262)
.+.+++...|+.+....-++++.|=...-.+=+.+..+++ +...+..++++.+++ +++.+|
T Consensus 22 ~~~~~Ln~~LA~~~~l~~k~~~~hW~v~G~~f~~lH~~le-e~~~~~~~~~D~iAE---Ri~~lG 82 (162)
T PRK09448 22 ATIELLNQQLAQFIDLSLITKQAHWNMKGANFIAVHEMLD-GFRTALEDHLDTMAE---RAVQLG 82 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHH-HHHHHHHHHhHHHHH---HHHHcC
Confidence 5778999999999999999998888776666666677777 555555555555554 455555
No 97
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=30.58 E-value=3.9e+02 Score=23.84 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=27.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Q 024785 127 LKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV 159 (262)
Q Consensus 127 L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v 159 (262)
...|++||++.+.=|.+||..|.+.-..-.+..
T Consensus 21 ~ke~~~FlkkRa~iEeeYak~L~KLak~~~~~~ 53 (234)
T cd07652 21 AKEFATFLKKRAAIEEEHARGLKKLARTTLDTY 53 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 567999999999999999999998776654433
No 98
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=26.12 E-value=1.4e+02 Score=21.66 Aligned_cols=31 Identities=39% Similarity=0.448 Sum_probs=26.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 024785 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRG 156 (262)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHA~kLi~y~n~RG 156 (262)
-+..++.||++++.=|.++|..|-+.-..-.
T Consensus 24 ~~~~l~~~~keRa~lE~~Yak~L~kl~~~~~ 54 (91)
T PF00611_consen 24 LLEELASFFKERASLEEEYAKSLQKLAKKFK 54 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567999999999999999999987766544
No 99
>KOG2225 consensus Proteins containing regions of low-complexity [General function prediction only]
Probab=24.77 E-value=7.5e+02 Score=25.16 Aligned_cols=114 Identities=15% Similarity=0.141 Sum_probs=64.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcc-CCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024785 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSE-FDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVA 204 (262)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~-f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA 204 (262)
+|.+++.|||....=--..-..|++-+.++-.++.-+.-.....+ +++ ....+.+..+..-.+| ++...+.+|..-|
T Consensus 491 ALANMSa~Fr~LhpyvaQRliSLf~lLtkkH~k~~~q~~~s~~~~v~~n-vst~P~d~~qDl~vlE-EviRm~LEIiNSc 568 (695)
T KOG2225|consen 491 ALANMSAFFRNLHPYVAQRLISLFDLLTKKHAKMVDQMRVSSQNDVADN-VSTQPIDFHQDLTVLE-EVIRMLLEIINSC 568 (695)
T ss_pred HHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccC-CCCCchhhHhhHHHHH-HHHHHHHHHHHHH
Confidence 577888999988776666666677777777666543322221111 111 0112333333333334 6777788888777
Q ss_pred hhCC----CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhc
Q 024785 205 NKNH----DVQLADFVESKYLHEQVEAIKKISEYVAQLRRV 241 (262)
Q Consensus 205 ~~~~----D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr~ 241 (262)
.-++ -.-....|-.+=|-|+-..--.+.|++.++..+
T Consensus 569 Ltn~L~hnpnLvY~LLYkR~lFe~fr~Hp~FQD~lqNId~V 609 (695)
T KOG2225|consen 569 LTNGLRHNPNLVYNLLYKRALFEAFRQHPMFQDLLQNIDAV 609 (695)
T ss_pred hhCccccCchHHHHHHHHHHHHHHHhhChhHHHHHHHHHHH
Confidence 6542 222344444455666666667777777777655
No 100
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=24.58 E-value=5.2e+02 Score=23.27 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=52.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeeccccCCCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024785 126 ALKGLAKFFKESSEEEREHAEKLMEYQNK-RGGKVKLQSILMPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVA 204 (262)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHA~kLi~y~n~-RGG~v~l~~I~~P~~~f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA 204 (262)
...-+..||++.|.=|.+.|.+|.+.-.+ .+|.+. .|+...++.. +..|-.-...+|... +
T Consensus 20 ~~~el~~f~kERA~IE~~YaK~L~kLskk~~~g~~E---------------~GTl~~sw~~-~~~E~e~~a~~H~~l--a 81 (240)
T cd07672 20 NCKEFEDFLKERASIEEKYGKELLNLSKKKPCGQTE---------------INTLKRSLDV-FKQQIDNVGQSHIQL--A 81 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc---------------cchHHHHHHH-HHHHHHHHHHHHHHH--H
Confidence 45669999999999999999999988875 332221 1344444432 222332222232222 2
Q ss_pred hhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 205 NKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 205 ~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
..-.+ .+. -|+ .|...|-+.-+.+...+..+
T Consensus 82 ~~L~~-~~~-~~~-~f~~~qk~~rKk~e~~~ek~ 112 (240)
T cd07672 82 QTLRD-EAK-KME-DFRERQKLARKKIELIMDAI 112 (240)
T ss_pred HHHHH-HHH-HHH-HHHHHHHHHHHHHHHHHHHH
Confidence 22222 111 355 56666777777776666555
No 101
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=24.38 E-value=4.1e+02 Score=22.01 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 178 DALYAMELTLSLEKLTNEKLLNLHKVANKN--HDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 178 ~~leale~AL~lEk~v~~~l~~L~~lA~~~--~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
.+..++...+.+|......|..+...|... +=+.++.|+. .--.|..+|-.++-+++...
T Consensus 3 ~~~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~-~~s~eE~~HA~~l~~yi~~r 64 (160)
T cd00904 3 KVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFK-EQAQEEREHAEKFYKYQNER 64 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHC
Confidence 357899999999999999999999999654 5556666666 33334444555555555443
No 102
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=24.23 E-value=3.2e+02 Score=25.70 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=46.3
Q ss_pred HhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCcCccCcHHHHHHHHHHHHHHHHHHH
Q 024785 118 AYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMELTLSLEKLTNEKL 197 (262)
Q Consensus 118 a~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f~~~e~~~~leale~AL~lEk~v~~~l 197 (262)
.+|.+. --++|++.-++-.+-+|--|.. +.-++...+-. ....+..+ ++ ...+.+++..|.++|+.-...+
T Consensus 175 ~~l~~~-~km~g~~~~i~~I~RDE~lH~~-f~~~l~~~~~~-~~~~~~~~--~~----~~~i~~l~~~av~~E~e~~~~~ 245 (324)
T PRK13966 175 MYWSSR-AKLTNTADMIRLIIRDEAVHGY-YIGYKFQRGLA-LVDDVTRA--EL----KDYTYELLFELYDNEVEYTQDL 245 (324)
T ss_pred HHHhhc-CCCCcHHHHHHHHHHhHHHHHH-HHHHHHHHHHH-hCChhhHH--HH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 355554 3899999999999999999994 44454443210 00101111 10 0235789999999999988766
Q ss_pred HH
Q 024785 198 LN 199 (262)
Q Consensus 198 ~~ 199 (262)
..
T Consensus 246 ~~ 247 (324)
T PRK13966 246 YD 247 (324)
T ss_pred Hh
Confidence 54
No 103
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=24.16 E-value=1.4e+02 Score=23.92 Aligned_cols=56 Identities=27% Similarity=0.231 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 182 AMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 182 ale~AL~lEk~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
.+..+|+.+....-++++.|=.....+-+.+..+++ +...+..++++.+.+-+-.|
T Consensus 2 ~Ln~~lA~~~~~~~~~~~~HW~v~G~~f~~lh~~l~-e~~~~~~~~~D~lAERi~~l 57 (139)
T cd01043 2 ALNQLLADLYVLYLKLKNYHWNVKGPNFFALHELFE-ELYDELREAIDEIAERIRAL 57 (139)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCccCcCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 456677888888888888877777777777888888 66666666666666544444
No 104
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.14 E-value=5.2e+02 Score=23.38 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 024785 178 DALYAMELTLSLEKLTNEKLLNLHKVANK-------NHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (262)
Q Consensus 178 ~~leale~AL~lEk~v~~~l~~L~~lA~~-------~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lr 239 (262)
.++..++.|-..|..+...+..+...-.. ...-.+..-|. .|+..|++..+++-.++..+|
T Consensus 161 eA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~-ey~~~~ie~erk~l~~lE~~r 228 (230)
T cd07625 161 EAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIR-EYTLRKIEYERKKLSLLERIR 228 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcc
Confidence 67888888888999888888877654322 22333344466 799999999988877776664
No 105
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=23.95 E-value=1.3e+02 Score=25.94 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024785 207 NHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (262)
Q Consensus 207 ~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~L 238 (262)
.+|+.+..+|+ ++..++.+|..++.+.+..+
T Consensus 26 ~~~~~~~~~l~-~~~~~E~~Hl~~f~~~i~~~ 56 (165)
T cd01042 26 ARDPAVRPLIK-EMLDEEKDHLAWFEELLPEL 56 (165)
T ss_pred hCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 37799999999 99999999999999999887
No 106
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.38 E-value=1.7e+02 Score=20.11 Aligned_cols=29 Identities=31% Similarity=0.316 Sum_probs=24.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024785 126 ALKGLAKFFKESSEEEREHAEKLMEYQNK 154 (262)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHA~kLi~y~n~ 154 (262)
-+||.|......++.|.+|-..+-+-..+
T Consensus 12 i~Pg~aerI~~mae~eq~hR~~~e~~~l~ 40 (50)
T PF10097_consen 12 ILPGAAERIFAMAEKEQEHRHELEKKALK 40 (50)
T ss_pred HCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999988655543
No 107
>PLN02492 ribonucleoside-diphosphate reductase
Probab=23.04 E-value=3.1e+02 Score=25.65 Aligned_cols=61 Identities=13% Similarity=0.041 Sum_probs=42.7
Q ss_pred hcCcCcccchhHHHHHHHHHHHHHHHHHHHH---HHHHHcCCeeeeccccCCCccCCcCccCcHHHHHHHHHHHHHHHHH
Q 024785 119 YFDRDNVALKGLAKFFKESSEEEREHAEKLM---EYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMELTLSLEKLTNE 195 (262)
Q Consensus 119 ~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi---~y~n~RGG~v~l~~I~~P~~~f~~~e~~~~leale~AL~lEk~v~~ 195 (262)
||.+.+ -++|++.-.+-.+-+|.-|..-.. +.+.. .|.. ..+.++++.|.+.|+.-..
T Consensus 175 ~l~~~g-~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~-----------~~~~-------~~v~~l~~eav~~E~~~~~ 235 (324)
T PLN02492 175 WLKKRG-LMPGLTFSNELISRDEGLHCDFACLLYSLLKN-----------KLSE-------ERVKEIVCEAVEIEKEFVC 235 (324)
T ss_pred HHHHcC-CCcchHHHHHHHHhhHHHHHHHHHHHHHHHHh-----------CCCH-------HHHHHHHHHHHHHHHHHHH
Confidence 455443 699999999999999999996443 33331 1221 2567899999999987666
Q ss_pred HHH
Q 024785 196 KLL 198 (262)
Q Consensus 196 ~l~ 198 (262)
.+.
T Consensus 236 ~~~ 238 (324)
T PLN02492 236 DAL 238 (324)
T ss_pred HHc
Confidence 443
No 108
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=21.19 E-value=1.1e+03 Score=25.86 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=76.7
Q ss_pred HHHHHhhc---cCCCCccchhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHH
Q 024785 69 EEVKKELD---LVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHA 145 (262)
Q Consensus 69 ~e~~~~~~---~~~~~~~~s~~rq~~s~~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA 145 (262)
||||.-+. .-|.-|..+..| +.+.-.|.+-+-..-.++|+++.++.|..-..+.. .|-
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~ 630 (932)
T PRK13184 570 EEIKSLLLALKRYSQHPEISRLR----DHLVYRLHESLYKHRREALVFMLLALWIAPEKISS---------------REE 630 (932)
T ss_pred HHHHHHHHHHHhcCCCCccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc---------------hHH
Confidence 45554332 336777666555 34566677777777788999999999887654333 355
Q ss_pred HHHHHHHHHcCCeeeeccccCCCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHH
Q 024785 146 EKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQL 212 (262)
Q Consensus 146 ~kLi~y~n~RGG~v~l~~I~~P~~~f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~~t 212 (262)
++|++.+..+-...-+..+...+..|. -..|+.-|+..-..+--|.+|.+-+.+.+|+..
T Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (932)
T PRK13184 631 EKFLEILYHKQQATLFCQLDKTPLQFR-------SSKMELFLSFWSGFTPFLPELFQRAWDLRDYRA 690 (932)
T ss_pred HHHHHHHHhhccCCceeeccCchhhhh-------hhhHHHHHHHHhcCchhhHHHHHHHhhcccHHH
Confidence 677777777666555655655444443 235777777777777777777777776666644
No 109
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=21.11 E-value=7.7e+02 Score=23.93 Aligned_cols=120 Identities=14% Similarity=0.136 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCc
Q 024785 94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDH 173 (262)
Q Consensus 94 ~~e~aLNeQIn~El~aSy~YlsmAa~f~~~~v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I~~P~~~f~~ 173 (262)
..++-|-.-...|+...-.|--|+.-.... =|-++..|.-.|-+|-.||=-|=+=+.+-|-.+.|+-+.+-.. |.
T Consensus 83 ~FidFLerSctaEFSGflLYKEl~rrlk~~---nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~k~-YT- 157 (355)
T PRK13654 83 EFIDFLERSCTAEFSGFLLYKELSRRLKDR---NPLLAELFQLMARDEARHAGFLNKAMKDFGLSLDLGFLTKKKK-YT- 157 (355)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhcccc---CcHHHHHHHHHhhhHHHHhhhHHHHHHHcCccccchhhccCCc-ee-
Confidence 368888999999999999999999988753 3889999999999999999999999999999999988875432 11
Q ss_pred CccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCH---HHHHHHHHHh
Q 024785 174 AEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDV---QLADFVESKY 220 (262)
Q Consensus 174 ~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D~---~t~~FLe~~f 220 (262)
+-.+.=++=...-.||--.-.+=.|+..-+++-|. -+.+|+|+|+
T Consensus 158 --fF~PkfIfYatYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WC 205 (355)
T PRK13654 158 --FFPPKFIFYATYLSEKIGYWRYITIYRHLEKHPEHRFHPIFKFFENWC 205 (355)
T ss_pred --eeCcceeeehhHhHhhhhHHHHHHHHHHHHhCcccccCchHHHHHHHh
Confidence 01122244456677998888888888887766554 4566777554
No 110
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=20.96 E-value=1.3e+02 Score=25.38 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhc
Q 024785 193 TNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRV 241 (262)
Q Consensus 193 v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr~ 241 (262)
+.+++.+|.+ |.+.+||..++=|...++.+ +..+.+..+.-+||+
T Consensus 90 v~~~L~~L~~-aL~~~d~~~A~~Ih~~L~t~---h~~E~~~WmvGVKRL 134 (157)
T PF07304_consen 90 VVDKLHQLAQ-ALQARDYDAADEIHVDLMTD---HVDECGNWMVGVKRL 134 (157)
T ss_dssp HHHHHHHHHH-HHHHT-HHHHHHHHHHHHHS---SHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHH-HHHcCCHHHHHHHHHHHHhc---cHHHhhhHHHHHHHH
Confidence 4444444443 23468899988888666654 445666666666665
No 111
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=20.80 E-value=1.7e+02 Score=28.21 Aligned_cols=94 Identities=21% Similarity=0.275 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHhcCcCc-------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccc
Q 024785 94 DCEAAINEQINVEYN--VSYVYHAMFAYFDRDN-------VALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSI 164 (262)
Q Consensus 94 ~~e~aLNeQIn~El~--aSy~YlsmAa~f~~~~-------v~L~GfAkfF~~~S~EEreHA~kLi~y~n~RGG~v~l~~I 164 (262)
+=.+.+|.+|...+. +|..|-.--.||.... +||-|+|.+.-+.-++. |+..+.+-+...
T Consensus 127 ~klA~fhA~v~~~L~~p~S~yye~a~~Ylsg~~~~~~WQ~lGLQGIAD~~aRl~~~~--~~~~l~~al~~l--------- 195 (340)
T PF12069_consen 127 EKLAMFHAQVRAQLGQPASQYYEHAQAYLSGQLGWDNWQTLGLQGIADICARLDQED--NAQLLRKALPHL--------- 195 (340)
T ss_pred HHHHHHHHHHHHHcCCCcchhHHHHHHHHcCCcchhHHHHhhhhHHHHHHHHhcccc--hHHHHHHHHhhC---------
Confidence 345778888877654 4444554455555543 79999999988764443 466666655542
Q ss_pred cCCCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 024785 165 LMPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHD 209 (262)
Q Consensus 165 ~~P~~~f~~~e~~~~leale~AL~lEk~v~~~l~~L~~lA~~~~D 209 (262)
|. .++.++-.+|+|...-......|.+.+....|
T Consensus 196 --P~---------~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~~d 229 (340)
T PF12069_consen 196 --PP---------EVLYALCGCLEHQPLPDKLAEALLERLEQAPD 229 (340)
T ss_pred --Ch---------HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Confidence 21 35666666666665333333334444433333
No 112
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=20.67 E-value=1.4e+02 Score=22.28 Aligned_cols=51 Identities=20% Similarity=0.126 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcC
Q 024785 190 EKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVG 242 (262)
Q Consensus 190 Ek~v~~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~ik~l~~~l~~Lrr~g 242 (262)
++.....+..|...+.+.+ +-|.+=|. .+|.+..-....+..++..|...|
T Consensus 2 ~~~~~~~i~~Li~~gK~~G-~lT~~eI~-~~L~~~~~~~e~id~i~~~L~~~g 52 (82)
T PF03979_consen 2 IEQYEEAIKKLIEKGKKKG-YLTYDEIN-DALPEDDLDPEQIDEIYDTLEDEG 52 (82)
T ss_dssp --HHHHHHHHHHHHHHHHS-S-BHHHHH-HH-S-S---HHHHHHHHHHHHTT-
T ss_pred cchhHHHHHHHHHHHhhcC-cCCHHHHH-HHcCccCCCHHHHHHHHHHHHHCC
Confidence 4566778888999998766 47777788 788877778888999999998775
Done!