Query 024786
Match_columns 262
No_of_seqs 154 out of 215
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 14:24:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tfi_A Transcriptional elongat 87.8 0.52 1.8E-05 32.6 3.6 39 34-72 7-48 (50)
2 1qyp_A RNA polymerase II; tran 86.8 0.43 1.5E-05 32.9 2.7 38 36-73 15-55 (57)
3 3h0g_I DNA-directed RNA polyme 79.2 1.8 6.3E-05 33.6 3.8 37 37-73 73-112 (113)
4 3po3_S Transcription elongatio 74.7 2.3 7.9E-05 35.7 3.5 38 35-72 136-176 (178)
5 1twf_I B12.6, DNA-directed RNA 72.6 3.8 0.00013 32.2 4.1 39 36-74 72-113 (122)
6 2fiy_A Protein FDHE homolog; F 70.8 1.7 5.9E-05 39.4 2.0 35 36-71 222-263 (309)
7 1pqv_S STP-alpha, transcriptio 67.0 3.7 0.00013 36.8 3.3 37 36-72 268-307 (309)
8 3nw0_A Non-structural maintena 56.3 1.9 6.4E-05 37.4 -0.6 38 36-74 193-230 (238)
9 3qt1_I DNA-directed RNA polyme 55.0 2.5 8.7E-05 34.2 0.0 38 36-73 92-132 (133)
10 1k82_A Formamidopyrimidine-DNA 54.8 4.4 0.00015 35.5 1.5 30 35-69 239-268 (268)
11 1ee8_A MUTM (FPG) protein; bet 54.1 4.7 0.00016 35.4 1.6 30 35-69 234-263 (266)
12 2i9o_A MHB8A peptide; beta-hai 52.8 8 0.00028 25.8 2.1 13 197-209 1-13 (37)
13 2xzf_A Formamidopyrimidine-DNA 52.5 5 0.00017 35.2 1.5 30 35-69 241-270 (271)
14 4gat_A Nitrogen regulatory pro 51.4 12 0.00041 27.4 3.1 46 33-82 6-51 (66)
15 3u6p_A Formamidopyrimidine-DNA 51.3 4.7 0.00016 35.5 1.1 30 35-69 244-273 (273)
16 3cw1_L U1 small nuclear ribonu 48.3 5.1 0.00017 30.4 0.7 17 60-76 2-18 (77)
17 1gnf_A Transcription factor GA 47.2 11 0.00039 25.7 2.3 42 35-80 3-44 (46)
18 1pft_A TFIIB, PFTFIIBN; N-term 46.7 14 0.00048 24.4 2.6 34 34-73 3-36 (50)
19 1k3x_A Endonuclease VIII; hydr 45.5 6.8 0.00023 34.2 1.2 30 35-69 233-262 (262)
20 2jny_A Uncharacterized BCR; st 42.7 9.1 0.00031 28.0 1.3 33 33-72 7-39 (67)
21 1wii_A Hypothetical UPF0222 pr 42.1 25 0.00087 26.7 3.8 41 31-72 18-58 (85)
22 2ysj_A Tripartite motif-contai 40.2 25 0.00084 23.0 3.1 38 31-73 15-52 (63)
23 3dfx_A Trans-acting T-cell-spe 40.0 21 0.00074 25.9 2.9 46 33-82 4-49 (63)
24 2pk7_A Uncharacterized protein 40.0 11 0.00039 27.5 1.5 32 34-72 6-37 (69)
25 2ysl_A Tripartite motif-contai 39.9 31 0.0011 22.9 3.6 38 31-73 15-52 (73)
26 2jr6_A UPF0434 protein NMA0874 39.6 11 0.00038 27.4 1.4 32 34-72 6-37 (68)
27 2js4_A UPF0434 protein BB2007; 37.2 20 0.00068 26.2 2.4 32 34-72 6-37 (70)
28 2gmg_A Hypothetical protein PF 36.8 18 0.0006 28.9 2.2 14 35-48 83-96 (105)
29 2zjr_Z 50S ribosomal protein L 36.0 21 0.0007 25.5 2.3 29 30-70 24-52 (60)
30 2fc7_A ZZZ3 protein; structure 33.4 33 0.0011 25.5 3.1 33 27-69 12-44 (82)
31 2hf1_A Tetraacyldisaccharide-1 33.2 11 0.00038 27.4 0.5 30 35-71 7-36 (68)
32 2kpi_A Uncharacterized protein 32.5 26 0.00087 24.5 2.2 31 32-71 6-38 (56)
33 2k2d_A Ring finger and CHY zin 32.4 17 0.00057 27.1 1.3 11 38-48 57-67 (79)
34 1y02_A CARP2, FYVE-ring finger 28.6 19 0.00066 28.7 1.2 43 30-81 13-55 (120)
35 1wd2_A Ariadne-1 protein homol 27.8 42 0.0014 23.5 2.7 42 35-76 5-49 (60)
36 1nui_A DNA primase/helicase; z 26.9 31 0.0011 28.8 2.3 29 36-70 14-42 (255)
37 1z2q_A LM5-1; membrane protein 26.7 75 0.0026 23.0 4.0 34 31-73 16-49 (84)
38 1x4u_A Zinc finger, FYVE domai 25.0 49 0.0017 24.0 2.8 36 31-75 9-44 (84)
39 4hc9_A Trans-acting T-cell-spe 24.6 42 0.0014 26.4 2.5 46 33-82 56-101 (115)
40 2kae_A GATA-type transcription 22.2 26 0.00089 26.0 0.8 47 33-82 5-51 (71)
41 1dvp_A HRS, hepatocyte growth 21.4 65 0.0022 26.8 3.2 29 36-73 161-189 (220)
42 2kdx_A HYPA, hydrogenase/ureas 20.9 48 0.0017 25.3 2.1 14 36-49 89-103 (119)
43 1k81_A EIF-2-beta, probable tr 20.6 34 0.0012 22.0 1.0 31 37-71 1-31 (36)
44 1p91_A Ribosomal RNA large sub 20.3 61 0.0021 26.0 2.7 37 37-82 3-40 (269)
No 1
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=87.79 E-value=0.52 Score=32.59 Aligned_cols=39 Identities=18% Similarity=0.632 Sum_probs=29.7
Q ss_pred CCCcCCCCCcCCCceeeeecccCCCCCc---ccccccccccc
Q 024786 34 QEQLPCPRCESTNTKFCYYNNYNFSQPR---HFCKSCRRYWT 72 (262)
Q Consensus 34 ~e~~~CPRC~S~nTKFcYyNNy~~~QPR---~fCk~CrRyWT 72 (262)
....+||+|...+..|--.+..+...|- |.|..|..-|.
T Consensus 7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 3456899999888777666666665564 89999998885
No 2
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=86.82 E-value=0.43 Score=32.87 Aligned_cols=38 Identities=18% Similarity=0.581 Sum_probs=26.1
Q ss_pred CcCCCCCcCCCceeeeecccCCCCC---ccccccccccccc
Q 024786 36 QLPCPRCESTNTKFCYYNNYNFSQP---RHFCKSCRRYWTH 73 (262)
Q Consensus 36 ~~~CPRC~S~nTKFcYyNNy~~~QP---R~fCk~CrRyWT~ 73 (262)
.++||+|...+..|--.+-.....| .|.|..|.--|..
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 5789999984444443343344445 3999999999975
No 3
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=79.16 E-value=1.8 Score=33.65 Aligned_cols=37 Identities=19% Similarity=0.397 Sum_probs=24.9
Q ss_pred cCCCCCcCCCceeeeecccCCCCCc---cccccccccccc
Q 024786 37 LPCPRCESTNTKFCYYNNYNFSQPR---HFCKSCRRYWTH 73 (262)
Q Consensus 37 ~~CPRC~S~nTKFcYyNNy~~~QPR---~fCk~CrRyWT~ 73 (262)
.+||+|...+..|-..+-.+-..|- |.|..|..-|.+
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~~ 112 (113)
T 3h0g_I 73 KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE 112 (113)
T ss_dssp SCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCCC
T ss_pred cCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEec
Confidence 7999999876554333333333332 889999999974
No 4
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=74.69 E-value=2.3 Score=35.68 Aligned_cols=38 Identities=16% Similarity=0.637 Sum_probs=23.7
Q ss_pred CCcCCCCCcCCCceeeeecccCCCCC---cccccccccccc
Q 024786 35 EQLPCPRCESTNTKFCYYNNYNFSQP---RHFCKSCRRYWT 72 (262)
Q Consensus 35 e~~~CPRC~S~nTKFcYyNNy~~~QP---R~fCk~CrRyWT 72 (262)
...+||+|...+..|--.+-.+-..| -|.|..|..-|.
T Consensus 136 ~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 136 DRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 45799999976654322222222222 388999999995
No 5
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=72.61 E-value=3.8 Score=32.23 Aligned_cols=39 Identities=23% Similarity=0.520 Sum_probs=28.6
Q ss_pred CcCCCCCcCCCceeeeecccCCCCCc---ccccccccccccC
Q 024786 36 QLPCPRCESTNTKFCYYNNYNFSQPR---HFCKSCRRYWTHG 74 (262)
Q Consensus 36 ~~~CPRC~S~nTKFcYyNNy~~~QPR---~fCk~CrRyWT~G 74 (262)
...||+|...+.-|-..+-.+-..|- |.|..|..-|...
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~n 113 (122)
T 1twf_I 72 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSD 113 (122)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECC
T ss_pred CCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccC
Confidence 47899999876665555555444443 8999999999875
No 6
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=70.84 E-value=1.7 Score=39.40 Aligned_cols=35 Identities=23% Similarity=0.614 Sum_probs=25.6
Q ss_pred CcCCCCCcCCCceeeeecccC-------CCCCccccccccccc
Q 024786 36 QLPCPRCESTNTKFCYYNNYN-------FSQPRHFCKSCRRYW 71 (262)
Q Consensus 36 ~~~CPRC~S~nTKFcYyNNy~-------~~QPR~fCk~CrRyW 71 (262)
..+||.|.++ .++-|+.--. ...--+.|..|+.|+
T Consensus 222 R~~C~~Cg~~-~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~Yl 263 (309)
T 2fiy_A 222 RIKCSHCEES-KHLAYLSLEHDGQPAEKAVLRAETCPSCQGYL 263 (309)
T ss_dssp TTSCSSSCCC-SCCEEECCCC-CCCSTTCSEEEEEETTTTEEE
T ss_pred CcCCcCCCCC-CCeeEEEecCccccCCCcceEEEEcccccchH
Confidence 3589999998 4678875544 112238999999998
No 7
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=66.95 E-value=3.7 Score=36.83 Aligned_cols=37 Identities=16% Similarity=0.651 Sum_probs=23.4
Q ss_pred CcCCCCCcCCCceeeeecccCCCCCc---ccccccccccc
Q 024786 36 QLPCPRCESTNTKFCYYNNYNFSQPR---HFCKSCRRYWT 72 (262)
Q Consensus 36 ~~~CPRC~S~nTKFcYyNNy~~~QPR---~fCk~CrRyWT 72 (262)
...||+|...+..|-=.+..+-..|- |.|..|..-|.
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 56899999655443222223233332 89999999885
No 8
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=56.26 E-value=1.9 Score=37.42 Aligned_cols=38 Identities=24% Similarity=0.595 Sum_probs=30.6
Q ss_pred CcCCCCCcCCCceeeeecccCCCCCcccccccccccccC
Q 024786 36 QLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHG 74 (262)
Q Consensus 36 ~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyWT~G 74 (262)
...|+.|...=+..|+.+=. ..+....|..|++.|...
T Consensus 193 g~~C~~C~~~~H~~C~~~~~-~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 193 GQSCETCGIRMHLPCVAKYF-QSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CEECSSSCCEECHHHHHHHT-TTCSSCBCTTTCCBCCSC
T ss_pred CcccCccChHHHHHHHHHHH-HhCCCCCCCCCCCCCCCC
Confidence 46899999888888986543 456778999999999875
No 9
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=55.00 E-value=2.5 Score=34.23 Aligned_cols=38 Identities=24% Similarity=0.602 Sum_probs=0.0
Q ss_pred CcCCCCCcCCCceeeeecccCCCCC---ccccccccccccc
Q 024786 36 QLPCPRCESTNTKFCYYNNYNFSQP---RHFCKSCRRYWTH 73 (262)
Q Consensus 36 ~~~CPRC~S~nTKFcYyNNy~~~QP---R~fCk~CrRyWT~ 73 (262)
..+||+|...+..|-..|-..-..| -|.|..|..-|..
T Consensus 92 ~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~e 132 (133)
T 3qt1_I 92 DRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWKE 132 (133)
T ss_dssp -----------------------------------------
T ss_pred cCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeCc
Confidence 4799999987665433333333223 2889999999975
No 10
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=54.84 E-value=4.4 Score=35.54 Aligned_cols=30 Identities=17% Similarity=0.579 Sum_probs=21.8
Q ss_pred CCcCCCCCcCCCceeeeecccCCCCCccccccccc
Q 024786 35 EQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRR 69 (262)
Q Consensus 35 e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrR 69 (262)
+..+||||...=.|.-+ . .+.-|||..|++
T Consensus 239 ~g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 268 (268)
T 1k82_A 239 KGEPCRVCGTPIVATKH-A----QRATFYCRQCQK 268 (268)
T ss_dssp TTSBCTTTCCBCEEEEE-T----TEEEEECTTTCC
T ss_pred CCCCCCCCCCEeeEEEE-C----CCceEECCCCCC
Confidence 34689999988766554 2 244599999985
No 11
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=54.09 E-value=4.7 Score=35.37 Aligned_cols=30 Identities=33% Similarity=0.851 Sum_probs=21.9
Q ss_pred CCcCCCCCcCCCceeeeecccCCCCCccccccccc
Q 024786 35 EQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRR 69 (262)
Q Consensus 35 e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrR 69 (262)
+..+||||...=.|.-+ . .+.-|||..|++
T Consensus 234 ~g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 234 EGLPCPACGRPVERRVV-A----GRGTHFCPTCQG 263 (266)
T ss_dssp TTSBCTTTCCBCEEEES-S----SCEEEECTTTTT
T ss_pred CCCCCCCCCCEeeEEEE-C----CCceEECCCCCC
Confidence 34689999988666544 1 345599999997
No 12
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=52.77 E-value=8 Score=25.85 Aligned_cols=13 Identities=38% Similarity=0.992 Sum_probs=10.5
Q ss_pred ccccccccccccc
Q 024786 197 RGAWGLAGVSDAG 209 (262)
Q Consensus 197 r~~w~fpg~~d~~ 209 (262)
|+-|.|-|+..-|
T Consensus 1 rgkwtyngityeg 13 (37)
T 2i9o_A 1 RGKWTYNGITYEG 13 (37)
T ss_dssp CCCCCSSSCCCCC
T ss_pred CCceeECCEEeec
Confidence 6789999998754
No 13
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=52.55 E-value=5 Score=35.15 Aligned_cols=30 Identities=27% Similarity=0.650 Sum_probs=21.9
Q ss_pred CCcCCCCCcCCCceeeeecccCCCCCccccccccc
Q 024786 35 EQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRR 69 (262)
Q Consensus 35 e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrR 69 (262)
+..+||||...=.|.-+ . .+.-|||..|++
T Consensus 241 ~G~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 241 TGEKCSRCGAEIQKIKV-A----GRGTHFCPVCQQ 270 (271)
T ss_dssp TTSBCTTTCCBCEEEEE-T----TEEEEECTTTSC
T ss_pred CCCCCCCCCCEeeEEEE-C----CCceEECCCCCC
Confidence 34689999988666544 2 244599999996
No 14
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=51.39 E-value=12 Score=27.36 Aligned_cols=46 Identities=17% Similarity=0.520 Sum_probs=32.7
Q ss_pred CCCCcCCCCCcCCCceeeeecccCCCCCcccccccccccccCcccccccC
Q 024786 33 EQEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPV 82 (262)
Q Consensus 33 e~e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyWT~GGtLRnVPV 82 (262)
..+...|-.|.+.+|-. .-. ... -..+|-+|.-||-.-+.+|-+-.
T Consensus 6 ~~~~~~C~~C~t~~Tp~--WR~-gp~-G~~LCNaCGl~~~~~~~~RP~~~ 51 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPL--WRR-NPE-GQPLCNACGLFLKLHGVVRPLSL 51 (66)
T ss_dssp SSSSCCCTTTCCCCCSS--CEE-ETT-TEEECHHHHHHHHHHCSCCCGGG
T ss_pred CCCCCCCCCCCCCCCCc--CCc-CCC-CCCccHHHHHHHHHcCCCCchhh
Confidence 35668999999988752 111 111 22899999999999999877643
No 15
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=51.33 E-value=4.7 Score=35.50 Aligned_cols=30 Identities=30% Similarity=0.751 Sum_probs=21.6
Q ss_pred CCcCCCCCcCCCceeeeecccCCCCCccccccccc
Q 024786 35 EQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRR 69 (262)
Q Consensus 35 e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrR 69 (262)
+..+||||...=.|.-+= .+.-|||..|++
T Consensus 244 ~g~pC~~CG~~I~~~~~~-----gR~t~~CP~CQ~ 273 (273)
T 3u6p_A 244 QGNPCKRCGTPIEKTVVA-----GRGTHYCPRCQR 273 (273)
T ss_dssp TTSBCTTTCCBCEEEEET-----TEEEEECTTTCC
T ss_pred CcCCCCCCCCeEEEEEEC-----CCCeEECCCCCC
Confidence 446999999886665442 244599999985
No 16
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=48.28 E-value=5.1 Score=30.36 Aligned_cols=17 Identities=35% Similarity=1.030 Sum_probs=15.0
Q ss_pred CcccccccccccccCcc
Q 024786 60 PRHFCKSCRRYWTHGGT 76 (262)
Q Consensus 60 PR~fCk~CrRyWT~GGt 76 (262)
|||||.-|..|.|+.-.
T Consensus 2 PkYyCdYCd~~lt~Ds~ 18 (77)
T 3cw1_L 2 PKFYCDYCDTYLTHDSP 18 (77)
T ss_pred CCcccccCCceecCCCH
Confidence 89999999999988744
No 17
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=47.15 E-value=11 Score=25.75 Aligned_cols=42 Identities=24% Similarity=0.536 Sum_probs=30.2
Q ss_pred CCcCCCCCcCCCceeeeecccCCCCCcccccccccccccCcccccc
Q 024786 35 EQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDI 80 (262)
Q Consensus 35 e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyWT~GGtLRnV 80 (262)
+...|..|...+|-. +..- .....+|-+|.-||-+.|..|-+
T Consensus 3 ~~~~C~~C~tt~Tp~--WR~g--p~G~~LCNaCGl~~k~~~~~RP~ 44 (46)
T 1gnf_A 3 EARECVNCGATATPL--WRRD--RTGHYLCNACGLYHKMNGQNRPL 44 (46)
T ss_dssp CSCCCTTTCCCCCSS--CBCC--TTCCCBCSHHHHHHHHTCSCCCC
T ss_pred CCCCCCCcCCCCCCc--CccC--CCCCccchHHHHHHHHcCCCCCC
Confidence 456899999988752 1111 22238999999999999987743
No 18
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=46.66 E-value=14 Score=24.37 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=22.7
Q ss_pred CCCcCCCCCcCCCceeeeecccCCCCCccccccccccccc
Q 024786 34 QEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTH 73 (262)
Q Consensus 34 ~e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyWT~ 73 (262)
...+.||.|.+.+-.|. ..+-...|..|..-+..
T Consensus 3 ~~~~~CP~C~~~~l~~d------~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 3 NKQKVCPACESAELIYD------PERGEIVCAKCGYVIEE 36 (50)
T ss_dssp SSCCSCTTTSCCCEEEE------TTTTEEEESSSCCBCCC
T ss_pred CccEeCcCCCCcceEEc------CCCCeEECcccCCcccc
Confidence 34678999988543332 23456899999876643
No 19
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=45.54 E-value=6.8 Score=34.17 Aligned_cols=30 Identities=33% Similarity=0.718 Sum_probs=21.0
Q ss_pred CCcCCCCCcCCCceeeeecccCCCCCccccccccc
Q 024786 35 EQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRR 69 (262)
Q Consensus 35 e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrR 69 (262)
+..+||+|...=.|.-+= .+.-|||..|++
T Consensus 233 ~g~pC~~CG~~I~~~~~~-----gR~t~~CP~CQ~ 262 (262)
T 1k3x_A 233 DGEPCERCGSIIEKTTLS-----SRPFYWCPGCQH 262 (262)
T ss_dssp TTSBCTTTCCBCEEEEET-----TEEEEECTTTCC
T ss_pred CcCCCCCCCCEeEEEEEC-----CCCeEECCCCCC
Confidence 345899999876654432 244499999985
No 20
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=42.68 E-value=9.1 Score=27.96 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=22.5
Q ss_pred CCCCcCCCCCcCCCceeeeecccCCCCCcccccccccccc
Q 024786 33 EQEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWT 72 (262)
Q Consensus 33 e~e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyWT 72 (262)
--+.+.||.|... .-|- ...-...|+.|++-+-
T Consensus 7 LLeiL~CP~ck~~---L~~~----~~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 7 LLEVLACPKDKGP---LRYL----ESEQLLVNERLNLAYR 39 (67)
T ss_dssp GTCCCBCTTTCCB---CEEE----TTTTEEEETTTTEEEE
T ss_pred HHHHhCCCCCCCc---CeEe----CCCCEEEcCCCCcccc
Confidence 3467899999984 2232 2355688999987653
No 21
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=42.07 E-value=25 Score=26.73 Aligned_cols=41 Identities=15% Similarity=0.294 Sum_probs=29.7
Q ss_pred CCCCCCcCCCCCcCCCceeeeecccCCCCCcccccccccccc
Q 024786 31 AAEQEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWT 72 (262)
Q Consensus 31 ~~e~e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyWT 72 (262)
.+-+..-.||.|+..++=-|=..-- ..-.+.-|+.|...+.
T Consensus 18 ~~L~t~F~CPfCnh~~sV~vkidk~-~~~g~l~C~~Cg~~~~ 58 (85)
T 1wii_A 18 GTLETQFTCPFCNHEKSCDVKMDRA-RNTGVISCTVCLEEFQ 58 (85)
T ss_dssp CCCSSCCCCTTTCCSSCEEEEEETT-TTEEEEEESSSCCEEE
T ss_pred CCCCCeEcCCCCCCCCeEEEEEEcc-CCEEEEEcccCCCeEE
Confidence 3455677999999998776666532 3356788999987764
No 22
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.21 E-value=25 Score=23.00 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=24.2
Q ss_pred CCCCCCcCCCCCcCCCceeeeecccCCCCCccccccccccccc
Q 024786 31 AAEQEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTH 73 (262)
Q Consensus 31 ~~e~e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyWT~ 73 (262)
...++.+.||-|...-.+ ...+.=-..||+.|-+-|-+
T Consensus 15 ~~~~~~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQK-----PVTIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCCCCCCBCTTTCSBCSS-----CEECTTSSEECHHHHHHHHH
T ss_pred HhCccCCCCCcCCchhCC-----eEEeCCCCcchHHHHHHHHH
Confidence 334567899999765332 22222233699999998876
No 23
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=40.04 E-value=21 Score=25.86 Aligned_cols=46 Identities=17% Similarity=0.525 Sum_probs=32.8
Q ss_pred CCCCcCCCCCcCCCceeeeecccCCCCCcccccccccccccCcccccccC
Q 024786 33 EQEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPV 82 (262)
Q Consensus 33 e~e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyWT~GGtLRnVPV 82 (262)
+.....|-.|...+|-. +-.- .....+|-+|.-||-+.+..|-+.+
T Consensus 4 ~~~~~~C~~C~tt~Tp~--WR~g--p~G~~LCNACGl~~~~~~~~RP~~~ 49 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTL--WRRN--ANGDPVCNACGLYYKLHNINRPLTM 49 (63)
T ss_dssp CCTTCCCTTTCCSCCSS--CCCC--TTSCCCCHHHHHHHHHHSSCCCGGG
T ss_pred CCCCCcCCCcCCCCCCc--cCCC--CCCCchhhHHHHHHHHcCCCCCcCc
Confidence 34556899999988752 1111 1223899999999999999887764
No 24
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=40.01 E-value=11 Score=27.45 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=21.7
Q ss_pred CCCcCCCCCcCCCceeeeecccCCCCCcccccccccccc
Q 024786 34 QEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWT 72 (262)
Q Consensus 34 ~e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyWT 72 (262)
-+.+.||.|...-. | ....-...|+.|++-+-
T Consensus 6 LeiL~CP~ck~~L~---~----~~~~~~LiC~~cg~~YP 37 (69)
T 2pk7_A 6 LDILACPICKGPLK---L----SADKTELISKGAGLAYP 37 (69)
T ss_dssp GGTCCCTTTCCCCE---E----CTTSSEEEETTTTEEEE
T ss_pred HhheeCCCCCCcCe---E----eCCCCEEEcCCCCcEec
Confidence 35789999997522 2 23356688999987553
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.89 E-value=31 Score=22.87 Aligned_cols=38 Identities=24% Similarity=0.408 Sum_probs=24.7
Q ss_pred CCCCCCcCCCCCcCCCceeeeecccCCCCCccccccccccccc
Q 024786 31 AAEQEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTH 73 (262)
Q Consensus 31 ~~e~e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyWT~ 73 (262)
...++.+.||-|...-..-- .+.=-..||+.|-.-|-+
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~-----~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPV-----TIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEE-----ECTTCCEEEHHHHHHHCS
T ss_pred HhCccCCEeccCCcccCCeE-----EcCCCChhhHHHHHHHHH
Confidence 33456789999986543321 122234699999998876
No 26
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=39.61 E-value=11 Score=27.44 Aligned_cols=32 Identities=13% Similarity=0.327 Sum_probs=21.8
Q ss_pred CCCcCCCCCcCCCceeeeecccCCCCCcccccccccccc
Q 024786 34 QEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWT 72 (262)
Q Consensus 34 ~e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyWT 72 (262)
-+.+.||.|... .-|- ...-...|+.|++-+-
T Consensus 6 L~iL~CP~ck~~---L~~~----~~~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 6 LDILVCPVTKGR---LEYH----QDKQELWSRQAKLAYP 37 (68)
T ss_dssp SCCCBCSSSCCB---CEEE----TTTTEEEETTTTEEEE
T ss_pred hhheECCCCCCc---CeEe----CCCCEEEcCCCCcEec
Confidence 467899999963 3332 2346688999987553
No 27
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=37.17 E-value=20 Score=26.23 Aligned_cols=32 Identities=22% Similarity=0.496 Sum_probs=22.2
Q ss_pred CCCcCCCCCcCCCceeeeecccCCCCCcccccccccccc
Q 024786 34 QEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWT 72 (262)
Q Consensus 34 ~e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyWT 72 (262)
-+.+.||.|... .-|- ...-...|+.|++-+-
T Consensus 6 L~iL~CP~ck~~---L~~~----~~~~~LiC~~cg~~YP 37 (70)
T 2js4_A 6 LDILVCPVCKGR---LEFQ----RAQAELVCNADRLAFP 37 (70)
T ss_dssp CCCCBCTTTCCB---EEEE----TTTTEEEETTTTEEEE
T ss_pred hhheECCCCCCc---CEEe----CCCCEEEcCCCCceec
Confidence 467899999984 3332 2356688999987654
No 28
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.78 E-value=18 Score=28.92 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=9.1
Q ss_pred CCcCCCCCcCCCce
Q 024786 35 EQLPCPRCESTNTK 48 (262)
Q Consensus 35 e~~~CPRC~S~nTK 48 (262)
.+-.||+|.|.+..
T Consensus 83 kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 83 IPSRCPKCKSEWIE 96 (105)
T ss_dssp CCSSCSSSCCCCBC
T ss_pred CCCCCcCCCCCccC
Confidence 34577777777654
No 29
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=36.01 E-value=21 Score=25.54 Aligned_cols=29 Identities=28% Similarity=0.780 Sum_probs=23.6
Q ss_pred CCCCCCCcCCCCCcCCCceeeeecccCCCCCcccccccccc
Q 024786 30 PAAEQEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRY 70 (262)
Q Consensus 30 p~~e~e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRy 70 (262)
.+..+....||.|... + .|.+.|.+|.-|
T Consensus 24 kl~~p~l~~c~~cG~~--~----------~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 24 ALTAPNLTECPQCHGK--K----------LSHHICPNCGYY 52 (60)
T ss_dssp CCCCCCCEECTTTCCE--E----------CTTBCCTTTCBS
T ss_pred cccCCCceECCCCCCE--e----------CCceEcCCCCcC
Confidence 4566778899999875 4 899999999966
No 30
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=33.37 E-value=33 Score=25.49 Aligned_cols=33 Identities=18% Similarity=0.471 Sum_probs=21.5
Q ss_pred CCCCCCCCCCcCCCCCcCCCceeeeecccCCCCCccccccccc
Q 024786 27 AKNPAAEQEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRR 69 (262)
Q Consensus 27 a~~p~~e~e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrR 69 (262)
+...........|-.|.... ..-.||.|..|..
T Consensus 12 ~~~~~~~H~~~~Cd~C~~~p----------I~G~RykC~~C~d 44 (82)
T 2fc7_A 12 AESGFVQHVGFKCDNCGIEP----------IQGVRWHCQDCPP 44 (82)
T ss_dssp SSTTSCEESSCCCSSSCCSS----------EESCEEEESSSCS
T ss_pred ccccCCeeCcCCCCCCCCCc----------ceeceEECCcCCC
Confidence 33334444566888887543 2357899999988
No 31
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=33.22 E-value=11 Score=27.44 Aligned_cols=30 Identities=30% Similarity=0.593 Sum_probs=20.7
Q ss_pred CCcCCCCCcCCCceeeeecccCCCCCccccccccccc
Q 024786 35 EQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYW 71 (262)
Q Consensus 35 e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyW 71 (262)
+.+.||.|... .-|- ...-...|+.|++-+
T Consensus 7 ~iL~CP~ck~~---L~~~----~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 7 EILVCPLCKGP---LVFD----KSKDELICKGDRLAF 36 (68)
T ss_dssp EECBCTTTCCB---CEEE----TTTTEEEETTTTEEE
T ss_pred hheECCCCCCc---CeEe----CCCCEEEcCCCCcEe
Confidence 56899999963 3332 235668899998755
No 32
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=32.46 E-value=26 Score=24.52 Aligned_cols=31 Identities=23% Similarity=0.588 Sum_probs=21.5
Q ss_pred CCCCCcCCCCCcCCCceeeeecccCCCCCccccc--cccccc
Q 024786 32 AEQEQLPCPRCESTNTKFCYYNNYNFSQPRHFCK--SCRRYW 71 (262)
Q Consensus 32 ~e~e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk--~CrRyW 71 (262)
.--+.+.||.|... .- |+. ....|+ +|++-+
T Consensus 6 ~lL~iL~CP~c~~~---L~-~~~-----~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 6 GLLEILACPACHAP---LE-ERD-----AELICTGQDCGLAY 38 (56)
T ss_dssp SCTTSCCCSSSCSC---EE-EET-----TEEEECSSSCCCEE
T ss_pred HHHhheeCCCCCCc---ce-ecC-----CEEEcCCcCCCcEE
Confidence 34577899999985 22 222 667899 898655
No 33
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=32.43 E-value=17 Score=27.12 Aligned_cols=11 Identities=55% Similarity=0.884 Sum_probs=10.4
Q ss_pred CCCCCcCCCce
Q 024786 38 PCPRCESTNTK 48 (262)
Q Consensus 38 ~CPRC~S~nTK 48 (262)
+||.|.|.||+
T Consensus 57 kC~~C~SyNTr 67 (79)
T 2k2d_A 57 KCKICESYNTA 67 (79)
T ss_dssp CCTTTSCCCEE
T ss_pred cCcCCCCcCeE
Confidence 89999999998
No 34
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=28.64 E-value=19 Score=28.67 Aligned_cols=43 Identities=14% Similarity=0.385 Sum_probs=22.4
Q ss_pred CCCCCCCcCCCCCcCCCceeeeecccCCCCCcccccccccccccCccccccc
Q 024786 30 PAAEQEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIP 81 (262)
Q Consensus 30 p~~e~e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyWT~GGtLRnVP 81 (262)
|.|..+...|..|... | ++..-||-|+.|.+.+=..=+-..+|
T Consensus 13 ~~Pd~~~~~C~~C~~~---F------s~~~RkHHCR~CG~ifC~~Cs~~~~~ 55 (120)
T 1y02_A 13 PSPTGLEPSCKSCGAH---F------ANTARKQTCLDCKKNFCMTCSSQVGN 55 (120)
T ss_dssp -------CCCTTTCCC---C------SSGGGCEECTTTCCEECGGGEEC---
T ss_pred CcCccccCcccCcCCc---c------ccccccccCCCCCCeeCHHHhCCCCC
Confidence 4566666789999875 3 23367898999888765544433333
No 35
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.79 E-value=42 Score=23.49 Aligned_cols=42 Identities=26% Similarity=0.502 Sum_probs=28.8
Q ss_pred CCcCCCCCcCCCceeeeecccCCCC---CcccccccccccccCcc
Q 024786 35 EQLPCPRCESTNTKFCYYNNYNFSQ---PRHFCKSCRRYWTHGGT 76 (262)
Q Consensus 35 e~~~CPRC~S~nTKFcYyNNy~~~Q---PR~fCk~CrRyWT~GGt 76 (262)
...+||.|...-.|----|.-.-.. --+||-.|.+-|..-|.
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~~ 49 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGS 49 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGGT
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCCC
Confidence 4578999999888865444333332 24889999988876553
No 36
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=26.94 E-value=31 Score=28.84 Aligned_cols=29 Identities=24% Similarity=0.875 Sum_probs=21.2
Q ss_pred CcCCCCCcCCCceeeeecccCCCCCcccccccccc
Q 024786 36 QLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRY 70 (262)
Q Consensus 36 ~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRy 70 (262)
+.+||-|...+ +|-.|.. --++|..|..+
T Consensus 14 ~~~CP~Cg~~d-~~~~~~d-----g~~~C~~Cg~~ 42 (255)
T 1nui_A 14 HIPCDNCGSSD-GNSLFSD-----GHTFCYVCEKW 42 (255)
T ss_dssp EECCSSSCCSS-CEEEETT-----SCEEETTTCCE
T ss_pred CCcCCCCCCCC-CceEeCC-----CCeecccCCCc
Confidence 67999999865 4665642 14999999853
No 37
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=26.69 E-value=75 Score=23.01 Aligned_cols=34 Identities=21% Similarity=0.591 Sum_probs=22.7
Q ss_pred CCCCCCcCCCCCcCCCceeeeecccCCCCCccccccccccccc
Q 024786 31 AAEQEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTH 73 (262)
Q Consensus 31 ~~e~e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyWT~ 73 (262)
.+..+...|..|... | ++..-||-|+.|.+-.=.
T Consensus 16 ~pd~~~~~C~~C~~~---F------s~~~RrHHCR~CG~v~C~ 49 (84)
T 1z2q_A 16 QEDEDAPACNGCGCV---F------TTTVRRHHCRNCGYVLCG 49 (84)
T ss_dssp CCTTTCCBCTTTCCB---C------CTTSCCEECTTTCCEECT
T ss_pred ccCCCCCCCcCcCCc---c------ccchhcccccCCCcEECh
Confidence 344566788888765 3 344678989888776543
No 38
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.97 E-value=49 Score=23.96 Aligned_cols=36 Identities=19% Similarity=0.447 Sum_probs=24.8
Q ss_pred CCCCCCcCCCCCcCCCceeeeecccCCCCCcccccccccccccCc
Q 024786 31 AAEQEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGG 75 (262)
Q Consensus 31 ~~e~e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyWT~GG 75 (262)
.+..+...|..|... | ++..-||-|+.|.+-+=..=
T Consensus 9 ~pd~~~~~C~~C~~~---F------~~~~RrHHCR~CG~vfC~~C 44 (84)
T 1x4u_A 9 YPTNNFGNCTGCSAT---F------SVLKKRRSCSNCGNSFCSRC 44 (84)
T ss_dssp CSCCCCSSCSSSCCC---C------CSSSCCEECSSSCCEECTTT
T ss_pred ccCCCCCcCcCcCCc---c------ccchhhhhhcCCCcEEChhh
Confidence 344566789988875 3 33478899999988665543
No 39
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=24.56 E-value=42 Score=26.42 Aligned_cols=46 Identities=17% Similarity=0.512 Sum_probs=33.9
Q ss_pred CCCCcCCCCCcCCCceeeeecccCCCCCcccccccccccccCcccccccC
Q 024786 33 EQEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPV 82 (262)
Q Consensus 33 e~e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyWT~GGtLRnVPV 82 (262)
......|-.|...+|-- ... -..-+.+|-+|.-||..-+..|-+-+
T Consensus 56 ~~~~~~C~~C~t~~tp~--WRr--~~~g~~lCNaCgl~~~~~~~~rp~~~ 101 (115)
T 4hc9_A 56 RRAGTSCANCQTTTTTL--WRR--NANGDPVCNACGLYYKLHNINRPLTM 101 (115)
T ss_dssp CCTTCCCTTTCCSCCSS--CEE--CTTSCEECHHHHHHHHHHSSCCCGGG
T ss_pred ccccccCCCcCCCCcce--eEE--CCCCCCcchHHHHHHHHhCCCCCccc
Confidence 34568999999988742 111 12336899999999999999887765
No 40
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=22.23 E-value=26 Score=25.96 Aligned_cols=47 Identities=19% Similarity=0.404 Sum_probs=32.4
Q ss_pred CCCCcCCCCCcCCCceeeeecccCCCCCcccccccccccccCcccccccC
Q 024786 33 EQEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPV 82 (262)
Q Consensus 33 e~e~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyWT~GGtLRnVPV 82 (262)
..+...|-.|...+|-. +..-..... .+|-+|.=||-+.++.|-+..
T Consensus 5 ~~~~~~C~nC~tt~Tp~--WRrg~~~~g-~LCNACGl~~~~~~~~RP~~~ 51 (71)
T 2kae_A 5 NKKSFQCSNCSVTETIR--WRNIRSKEG-IQCNACFIYQRKYNKTRPVTA 51 (71)
T ss_dssp ---CCCCSSSCCSCCSS--CCCCSSSSC-CCSSHHHHHHHHHHSCCCTHH
T ss_pred CCCCCcCCccCCCCCCc--cccCCCCCC-ccchHHHHHHHHhCCCCCccc
Confidence 34668999999998852 222111222 899999999999999887754
No 41
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=21.38 E-value=65 Score=26.76 Aligned_cols=29 Identities=28% Similarity=0.854 Sum_probs=20.3
Q ss_pred CcCCCCCcCCCceeeeecccCCCCCccccccccccccc
Q 024786 36 QLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTH 73 (262)
Q Consensus 36 ~~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyWT~ 73 (262)
...|+.|.. +| ++..-||-|+.|.+-.=.
T Consensus 161 ~~~C~~C~~---~F------~~~~rrhhCr~CG~v~C~ 189 (220)
T 1dvp_A 161 GRVCHRCRV---EF------TFTNRKHHCRNCGQVFCG 189 (220)
T ss_dssp CSBCTTTCC---BC------CSSSCCEECTTTCCEECS
T ss_pred CCccCCCCC---cc------CCcccccccCCcCCEECh
Confidence 468999964 44 345788999998775543
No 42
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.92 E-value=48 Score=25.30 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=10.2
Q ss_pred Cc-CCCCCcCCCcee
Q 024786 36 QL-PCPRCESTNTKF 49 (262)
Q Consensus 36 ~~-~CPRC~S~nTKF 49 (262)
.. .||.|.+.+.+|
T Consensus 89 ~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 89 DYGVCEKCHSKNVII 103 (119)
T ss_dssp TTCCCSSSSSCCCEE
T ss_pred CCCcCccccCCCcEE
Confidence 45 788888887765
No 43
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=20.61 E-value=34 Score=22.01 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=20.5
Q ss_pred cCCCCCcCCCceeeeecccCCCCCccccccccccc
Q 024786 37 LPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYW 71 (262)
Q Consensus 37 ~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyW 71 (262)
+.||-|.+.+|++-- .+ ..--..|++|..-+
T Consensus 1 VlC~~C~~peT~l~~-~~---~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 1 VICRECGKPDTKIIK-EG---RVHLLKCMACGAIR 31 (36)
T ss_dssp CCCSSSCSCEEEEEE-ET---TEEEEEEETTTEEE
T ss_pred CCCcCCCCCCcEEEE-eC---CcEEEEhhcCCCcc
Confidence 479999999999754 11 12225688886543
No 44
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=20.28 E-value=61 Score=25.98 Aligned_cols=37 Identities=19% Similarity=0.541 Sum_probs=23.4
Q ss_pred cCCCCCcCCCceeeeecccCCCCCccccccccccc-ccCcccccccC
Q 024786 37 LPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYW-THGGTLRDIPV 82 (262)
Q Consensus 37 ~~CPRC~S~nTKFcYyNNy~~~QPR~fCk~CrRyW-T~GGtLRnVPV 82 (262)
+.||.|.+..+. .+.-+.|..|+.|- ++.|-+.-+++
T Consensus 3 ~~Cp~C~~~~~~---------~~~~~~C~~~~~~~~~~~Gy~~~~~~ 40 (269)
T 1p91_A 3 FSCPLCHQPLSR---------EKNSYICPQRHQFDMAKEGYVNLLPV 40 (269)
T ss_dssp BBCTTTCCBCEE---------ETTEEECTTCCEEEBCTTSCEECSCS
T ss_pred ccCCCCCcccee---------CCCEEECCCCCcCCcCCCEEEEeecc
Confidence 689999886543 12346888888774 35565544444
Done!