BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024788
         (262 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
           Horikoshii Ot3
 pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
           Horikoshii Ot3
          Length = 227

 Score = 27.7 bits (60), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 9/114 (7%)

Query: 75  SEIQRAIPILKKAYGDSMHKVLHVGPDTCSV--VSTLLKEEETEAWGVEPYD--IEDADA 130
           S I+   P+L K Y     KVL +    C V   S LL++   E  GV+  +  I  A  
Sbjct: 23  SRIETLEPLLXK-YXKKRGKVLDLA---CGVGGFSFLLEDYGFEVVGVDISEDXIRKARE 78

Query: 131 RCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARV 184
             KS        V D +  L +  K+F  VI  D++ +  P  LN+   ++ RV
Sbjct: 79  YAKSRESNVEFIVGDAR-KLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRV 131


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,141,820
Number of Sequences: 62578
Number of extensions: 272861
Number of successful extensions: 662
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 660
Number of HSP's gapped (non-prelim): 4
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)