BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024788
(262 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M2Y6|Y3972_ARATH Uncharacterized protein At3g49720 OS=Arabidopsis thaliana
GN=At3g49720 PE=1 SV=1
Length = 261
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/262 (80%), Positives = 231/262 (88%), Gaps = 1/262 (0%)
Query: 1 MSRRPVSSTRRLVDTGSFPFTGALQSKSRSSPLLSVGLVLVGAFLLIGYAFSGSGIFGGD 60
M+RR V STRR+ D GSFPF GAL SKSRSSPLLS+ LVLVGA LLIGYA+SG GIF
Sbjct: 1 MARRQVGSTRRVGDGGSFPFAGALHSKSRSSPLLSICLVLVGACLLIGYAYSGPGIFKSI 60
Query: 61 KAAVSRIEGDFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGV 120
K VS++ GD+SCT+E+QRAIP+LKKAYGD M KVLHVGPDTCSVVS+LLKEEETEAWGV
Sbjct: 61 KE-VSKVTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLLKEEETEAWGV 119
Query: 121 EPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPD 180
EPYDIEDAD+ CKS V KG+VRVADIKFPLPYRAKSF LVIVSDALDYLSPKYLNKT+P+
Sbjct: 120 EPYDIEDADSHCKSFVSKGLVRVADIKFPLPYRAKSFSLVIVSDALDYLSPKYLNKTVPE 179
Query: 181 LARVASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEENEPAVKKF 240
LARVASDGV++FAG PGQQRAKVAELSKFGRPAKMRS+SWW R+FVQT+LEEN+ KKF
Sbjct: 180 LARVASDGVVLFAGLPGQQRAKVAELSKFGRPAKMRSASWWNRFFVQTNLEENDAPSKKF 239
Query: 241 EQAASKKSYKPNCQVFHLKPLR 262
EQA SK YKP CQVFHLKPL
Sbjct: 240 EQAVSKGLYKPACQVFHLKPLH 261
>sp|Q49XP0|CVFC_STAS1 Conserved virulence factor C OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=cvfC
PE=3 SV=1
Length = 372
Score = 34.3 bits (77), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 17 SFPFTGALQSKSRSSPLLSVGLVLVGAF---LLIGYAFSGSGIFGGDKAAVSRIEGDFSC 73
FP G S+ +PL +VL+G ++ Y F G AV R GD C
Sbjct: 232 DFPLLGDAVSEEEKTPLRREAIVLLGMIEDKAVLPYLFKG---LHDKSPAVRRTAGD--C 286
Query: 74 TSEI--QRAIPILKKAYGDSMHKVL 96
S++ ++A+P ++KA D HK++
Sbjct: 287 LSDLGFKQALPEMEKALDDP-HKIV 310
>sp|Q8R600|EFTS_FUSNN Elongation factor Ts OS=Fusobacterium nucleatum subsp. nucleatum
(strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
GN=tsf PE=3 SV=2
Length = 297
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 162 VSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAEL-SKFGRPAKMRSSSW 220
+ ++DYL K + K + R+A++G++ P ++A + E S+ AK
Sbjct: 34 IEKSIDYLREKGIAKAVKKAGRIAAEGLIFDEATPDHKKAVILEFNSETDFVAKNEEFKE 93
Query: 221 WIRYFVQTSLEENEPAVKKFEQA 243
+ R V+ +LE N +++ +A
Sbjct: 94 FGRKLVKIALERNVHQLEELNEA 116
>sp|Q5UPL2|YR135_MIMIV Putative GMC-type oxidoreductase R135 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R135 PE=1 SV=1
Length = 702
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 218 SSWWIRYFVQTSLEENEPAVKKFEQAASKKSYKP 251
++WW YFV T + ++ PA ++F SK SY P
Sbjct: 587 ANWW-HYFVPTLVGDDTPAGREFADTLSKLSYYP 619
>sp|Q57678|NUCS_METJA Endonuclease NucS OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=nucS PE=3 SV=1
Length = 263
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 56 IFGGDKA------AVSRIEGDFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTL 109
I G DK + R D S+++R + K YG+ + + V P + L
Sbjct: 167 ILGKDKENKWVILELKRRRADLQAVSQLKRYVEYFKNKYGEDKVRGILVSPSLTTGAEKL 226
Query: 110 LKEEETEAWGVEP 122
LKEE E + P
Sbjct: 227 LKEENLEFKRLNP 239
>sp|A5D1J4|TRMD_PELTS tRNA (guanine-N(1)-)-methyltransferase OS=Pelotomaculum
thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
GN=trmD PE=3 SV=1
Length = 251
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 21/227 (9%)
Query: 19 PFTGALQSKSRSSPLLSVGLVLVGAFLLIGYAFSGSGIFGGDKAAVSRIEGDFSCTSEIQ 78
PF+ ++ +++ L+ +GL+ + F + +GG V E F +
Sbjct: 16 PFSSSILKRAQERGLVEIGLINIRDFSTNKHHTVDDAPYGGGAGMVMGPEALFGAVEHVA 75
Query: 79 RAIPILKKAYGDSMHKVLHVGPDTCSVVSTL---LKEEETEAWGVEPYDIEDADARCKSL 135
R YG +V+ + P L EET Y E D R +
Sbjct: 76 RK-------YGSKPGRVVLMCPQGIPFTQAYAADLAREETIVLVCGHY--EGIDERVREA 126
Query: 136 VHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGY 195
+ + + D P ++V DA+ L P L + L + S+G+L + +
Sbjct: 127 LVTDEISIGDYVLT----GGELPAMVVVDAVARLVPGVLGEALSVMEESFSNGLLEYPHF 182
Query: 196 --PGQQRA-KVAELSKFGRPAKMRSSSWWIRYFVQTSLEENEPAVKK 239
P + R KV E+ G ++R W R + +LE +K+
Sbjct: 183 TRPREFRGLKVPEVLLSGHHEEIR--KWRRRQSLLRTLERRPEMLKQ 227
>sp|P07067|VG37_BPT2 Long tail fiber protein p37 OS=Enterobacteria phage T2 GN=37 PE=3
SV=1
Length = 1341
Score = 31.2 bits (69), Expect = 7.5, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 12 LVDTGSFPFTGALQSKSRSSPLLSVGLVLVGAFLLIGYAFSGSGIFGGDKAAVSRIEGDF 71
+ TG + TG L+ +V G ++ Y +GSG + G A + I D
Sbjct: 62 ITQTGDYTQTGKFN-------LIGPQIVASGGYIEFNYRTTGSGAWSGQHTAKAPIFVDL 114
Query: 72 SCTSEIQRAIPILKKAYGD 90
S + PI+K+ + D
Sbjct: 115 SSATSTSEYNPIIKQRFKD 133
>sp|B4EVM7|Y1003_PROMH Probable phosphatase PMI1003 OS=Proteus mirabilis (strain HI4320)
GN=PMI1003 PE=3 SV=1
Length = 245
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 53 GSGIFGGDKAAVSRIEGDFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTL 109
G GI G +A + I+G+ CT ++ + + I+ + D + L + +T ++++T+
Sbjct: 65 GVGILYGIEANIKNIKGEIDCTEKMSKKLDIVLAGFHDPVMGSLGMVDNTKALIATI 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,900,053
Number of Sequences: 539616
Number of extensions: 4015098
Number of successful extensions: 9527
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9520
Number of HSP's gapped (non-prelim): 12
length of query: 262
length of database: 191,569,459
effective HSP length: 115
effective length of query: 147
effective length of database: 129,513,619
effective search space: 19038501993
effective search space used: 19038501993
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)