Query 024788
Match_columns 262
No_of_seqs 28 out of 30
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 07:25:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07021 MetW: Methionine bios 98.6 3E-08 6.4E-13 86.6 2.8 144 92-250 14-161 (193)
2 TIGR02021 BchM-ChlM magnesium 97.3 0.00079 1.7E-08 55.5 7.2 132 93-232 57-201 (219)
3 PF13489 Methyltransf_23: Meth 97.3 0.0002 4.4E-09 53.8 3.4 133 90-234 21-160 (161)
4 TIGR02081 metW methionine bios 97.3 0.0011 2.4E-08 54.1 7.7 132 93-233 15-163 (194)
5 PF08241 Methyltransf_11: Meth 97.3 0.00035 7.6E-09 47.8 3.8 92 96-192 1-95 (95)
6 TIGR03587 Pse_Me-ase pseudamin 97.1 0.00053 1.1E-08 57.9 3.7 98 93-195 45-143 (204)
7 PLN02336 phosphoethanolamine N 97.1 0.00076 1.6E-08 62.0 5.0 135 93-233 39-178 (475)
8 PRK07580 Mg-protoporphyrin IX 96.7 0.014 3E-07 47.6 8.9 108 79-192 51-163 (230)
9 PTZ00098 phosphoethanolamine N 96.6 0.0081 1.8E-07 52.3 7.7 159 70-233 31-198 (263)
10 TIGR02072 BioC biotin biosynth 96.5 0.022 4.7E-07 45.6 8.5 97 93-194 36-135 (240)
11 smart00828 PKS_MT Methyltransf 96.0 0.016 3.5E-07 47.4 5.5 133 93-233 1-140 (224)
12 PRK10258 biotin biosynthesis p 95.6 0.055 1.2E-06 45.5 7.3 98 92-195 43-141 (251)
13 TIGR00740 methyltransferase, p 95.5 0.17 3.7E-06 42.5 10.1 116 74-194 36-161 (239)
14 PLN02244 tocopherol O-methyltr 95.4 0.088 1.9E-06 47.6 8.3 136 91-232 118-273 (340)
15 PRK11036 putative S-adenosyl-L 94.7 0.16 3.4E-06 43.3 7.7 100 89-194 42-149 (255)
16 PRK05785 hypothetical protein; 94.4 0.15 3.3E-06 43.6 6.9 98 92-197 52-150 (226)
17 PRK06202 hypothetical protein; 94.4 0.064 1.4E-06 44.8 4.5 100 90-192 59-165 (232)
18 PRK15451 tRNA cmo(5)U34 methyl 94.4 0.31 6.8E-06 41.7 8.8 154 71-238 36-198 (247)
19 TIGR01934 MenG_MenH_UbiE ubiqu 94.4 0.12 2.6E-06 41.2 5.8 98 93-195 41-144 (223)
20 PLN02585 magnesium protoporphy 94.3 0.27 5.8E-06 45.2 8.5 133 92-232 145-294 (315)
21 PLN02336 phosphoethanolamine N 93.9 0.17 3.7E-06 46.8 6.6 132 93-233 268-410 (475)
22 TIGR00452 methyltransferase, p 93.8 0.23 5E-06 45.6 7.2 133 93-232 123-268 (314)
23 TIGR01983 UbiG ubiquinone bios 93.7 0.44 9.6E-06 38.8 7.9 95 93-194 47-149 (224)
24 cd02440 AdoMet_MTases S-adenos 93.6 0.12 2.6E-06 34.0 3.8 97 94-193 1-103 (107)
25 PF08242 Methyltransf_12: Meth 93.3 0.049 1.1E-06 39.2 1.7 89 96-186 1-94 (99)
26 PLN02233 ubiquinone biosynthes 91.6 0.96 2.1E-05 39.5 7.7 127 65-194 23-182 (261)
27 PRK01683 trans-aconitate 2-met 91.3 0.96 2.1E-05 38.1 7.2 101 90-197 30-132 (258)
28 PLN02396 hexaprenyldihydroxybe 91.0 0.72 1.6E-05 42.5 6.6 97 93-193 133-234 (322)
29 PRK11207 tellurite resistance 90.8 0.6 1.3E-05 38.8 5.5 110 72-192 17-132 (197)
30 PRK05134 bifunctional 3-demeth 90.8 0.71 1.5E-05 38.2 5.9 102 92-196 49-153 (233)
31 TIGR00477 tehB tellurite resis 90.7 0.53 1.1E-05 39.1 5.0 127 74-211 19-160 (195)
32 PRK08317 hypothetical protein; 90.5 1.1 2.3E-05 35.8 6.4 99 93-194 21-124 (241)
33 TIGR02752 MenG_heptapren 2-hep 90.4 0.53 1.2E-05 38.8 4.8 98 93-193 47-150 (231)
34 PLN02490 MPBQ/MSBQ methyltrans 90.0 0.73 1.6E-05 43.1 5.9 132 93-234 115-253 (340)
35 PRK00216 ubiE ubiquinone/menaq 89.9 0.73 1.6E-05 37.1 5.1 99 93-194 53-158 (239)
36 PF12847 Methyltransf_18: Meth 89.8 0.26 5.7E-06 35.5 2.3 100 93-193 3-110 (112)
37 PRK00312 pcm protein-L-isoaspa 89.0 1.4 3E-05 36.4 6.2 97 92-199 79-181 (212)
38 PRK15068 tRNA mo(5)U34 methylt 88.4 1.6 3.4E-05 39.8 6.7 98 93-194 124-226 (322)
39 PRK00121 trmB tRNA (guanine-N( 87.5 0.82 1.8E-05 38.3 4.1 136 79-214 28-177 (202)
40 TIGR02469 CbiT precorrin-6Y C5 86.2 1.7 3.7E-05 31.4 4.6 99 92-195 20-123 (124)
41 PRK12335 tellurite resistance 85.3 1.1 2.4E-05 39.3 3.9 109 73-192 108-221 (287)
42 TIGR03534 RF_mod_PrmC protein- 84.5 4.6 0.0001 33.2 7.0 68 93-162 89-160 (251)
43 PRK11088 rrmA 23S rRNA methylt 84.3 5.1 0.00011 34.8 7.4 102 82-198 76-184 (272)
44 PF13649 Methyltransf_25: Meth 83.2 0.47 1E-05 34.6 0.6 89 95-186 1-98 (101)
45 PRK08287 cobalt-precorrin-6Y C 81.8 3.1 6.8E-05 33.7 4.9 94 93-194 33-131 (187)
46 smart00138 MeTrc Methyltransfe 81.8 3.6 7.7E-05 36.3 5.6 51 143-194 191-241 (264)
47 TIGR00417 speE spermidine synt 81.7 2.4 5.1E-05 37.1 4.5 126 68-199 52-192 (270)
48 PF13847 Methyltransf_31: Meth 81.3 1.9 4.2E-05 33.6 3.4 113 90-208 2-126 (152)
49 PF11899 DUF3419: Protein of u 81.2 0.88 1.9E-05 43.2 1.7 39 154-192 293-332 (380)
50 PRK13944 protein-L-isoaspartat 80.3 4.9 0.00011 33.6 5.7 93 93-194 74-173 (205)
51 PF05401 NodS: Nodulation prot 76.6 1.7 3.7E-05 39.0 2.0 96 93-194 45-146 (201)
52 PRK13942 protein-L-isoaspartat 75.5 8.9 0.00019 32.4 6.0 93 93-193 78-175 (212)
53 PRK11705 cyclopropane fatty ac 74.7 9.6 0.00021 35.7 6.5 107 81-193 156-266 (383)
54 TIGR00406 prmA ribosomal prote 72.4 12 0.00025 33.3 6.2 107 93-205 161-270 (288)
55 PRK00517 prmA ribosomal protei 72.2 15 0.00033 31.7 6.7 100 91-202 119-221 (250)
56 TIGR00537 hemK_rel_arch HemK-r 71.0 10 0.00022 30.5 5.0 70 93-166 21-92 (179)
57 PF12147 Methyltransf_20: Puta 61.9 5.3 0.00011 38.2 2.0 155 75-231 121-292 (311)
58 PRK09328 N5-glutamine S-adenos 61.3 26 0.00057 29.6 5.9 68 93-162 110-181 (275)
59 PRK11873 arsM arsenite S-adeno 61.0 37 0.00081 29.1 6.8 138 92-232 78-225 (272)
60 smart00650 rADc Ribosomal RNA 60.7 12 0.00027 30.0 3.7 118 93-221 15-135 (169)
61 PRK14103 trans-aconitate 2-met 60.5 17 0.00037 31.0 4.7 93 92-193 30-125 (255)
62 PRK03612 spermidine synthase; 60.2 27 0.00058 34.1 6.5 105 91-199 297-421 (521)
63 PF10717 ODV-E18: Occlusion-de 55.7 11 0.00024 30.4 2.6 32 29-60 23-54 (85)
64 PF01135 PCMT: Protein-L-isoas 53.0 15 0.00033 31.9 3.3 94 93-195 74-174 (209)
65 PF02562 PhoH: PhoH-like prote 50.8 25 0.00055 31.0 4.3 66 130-202 94-161 (205)
66 PRK00811 spermidine synthase; 50.7 37 0.0008 30.3 5.3 122 70-197 58-195 (283)
67 PF01209 Ubie_methyltran: ubiE 49.7 23 0.00049 31.1 3.8 103 93-198 49-159 (233)
68 PLN02232 ubiquinone biosynthes 47.9 14 0.0003 29.9 2.1 48 141-191 30-78 (160)
69 TIGR00080 pimt protein-L-isoas 47.0 36 0.00077 28.5 4.4 94 93-194 79-177 (215)
70 PLN02823 spermine synthase 46.5 35 0.00075 32.0 4.7 114 70-194 85-220 (336)
71 PRK13168 rumA 23S rRNA m(5)U19 45.0 23 0.00049 33.4 3.3 109 93-209 299-415 (443)
72 PF08655 DASH_Ask1: DASH compl 44.9 11 0.00023 28.8 0.9 14 216-229 46-59 (66)
73 PF08955 BofC_C: BofC C-termin 44.0 12 0.00027 29.2 1.1 16 184-199 15-31 (75)
74 TIGR03676 aRF1/eRF1 peptide ch 43.8 8 0.00017 37.1 0.1 41 186-227 78-122 (403)
75 PF06040 Adeno_E3: Adenovirus 40.4 26 0.00056 30.1 2.6 45 8-52 58-108 (127)
76 TIGR00536 hemK_fam HemK family 40.1 1.5E+02 0.0032 26.2 7.4 68 93-162 116-188 (284)
77 TIGR00438 rrmJ cell division p 40.1 81 0.0017 25.7 5.4 108 75-197 21-149 (188)
78 cd03756 proteasome_alpha_arche 39.5 40 0.00087 28.4 3.6 68 158-226 39-114 (211)
79 PRK00440 rfc replication facto 38.7 14 0.0003 31.5 0.8 53 143-204 2-55 (319)
80 PF05157 T2SE_Nter: Type II se 38.7 8.1 0.00018 27.9 -0.5 65 148-214 20-86 (109)
81 TIGR02085 meth_trns_rumB 23S r 38.4 29 0.00062 32.2 2.8 107 93-206 235-346 (374)
82 TIGR00091 tRNA (guanine-N(7)-) 38.4 1.1E+02 0.0024 25.3 6.0 127 84-210 9-149 (194)
83 PF03848 TehB: Tellurite resis 35.5 42 0.00092 29.4 3.3 107 75-194 20-133 (192)
84 PF10514 Bcl-2_BAD: Pro-apopto 35.0 4.3 9.4E-05 36.0 -2.8 70 149-234 90-162 (167)
85 PF13506 Glyco_transf_21: Glyc 34.9 22 0.00047 29.5 1.3 39 155-196 30-68 (175)
86 PRK03522 rumB 23S rRNA methylu 34.4 41 0.00089 30.2 3.1 104 93-206 175-286 (315)
87 COG1409 Icc Predicted phosphoh 32.9 22 0.00048 29.1 1.1 40 139-194 2-41 (301)
88 TIGR02480 fliN flagellar motor 32.6 12 0.00025 27.8 -0.5 29 174-202 37-65 (77)
89 PRK00440 rfc replication facto 32.3 1.5E+02 0.0033 25.2 6.0 84 156-240 102-189 (319)
90 PRK14968 putative methyltransf 31.0 2.4E+02 0.0052 22.0 6.6 69 93-164 25-98 (188)
91 COG2126 RPL37A Ribosomal prote 31.0 21 0.00047 27.3 0.6 14 208-221 38-51 (61)
92 PRK14967 putative methyltransf 30.7 53 0.0012 27.6 3.0 68 93-162 38-107 (223)
93 cd02979 PHOX_C FAD-dependent P 30.6 66 0.0014 26.9 3.5 51 153-210 3-55 (167)
94 PF00326 Peptidase_S9: Prolyl 30.2 37 0.00081 27.3 1.9 51 50-100 21-71 (213)
95 TIGR00479 rumA 23S rRNA (uraci 29.8 39 0.00085 31.4 2.3 110 93-210 294-412 (431)
96 PRK10909 rsmD 16S rRNA m(2)G96 28.9 62 0.0013 28.0 3.2 95 93-194 55-159 (199)
97 PF14035 YlzJ: YlzJ-like prote 27.5 23 0.00049 26.4 0.2 14 160-173 46-59 (66)
98 TIGR01397 fliM_switch flagella 27.3 17 0.00037 32.6 -0.5 30 174-203 282-311 (320)
99 PRK06033 hypothetical protein; 26.6 17 0.00036 28.0 -0.6 29 174-202 36-64 (83)
100 PF04639 Baculo_E56: Baculovir 26.6 51 0.0011 31.8 2.5 34 12-46 257-290 (305)
101 COG3897 Predicted methyltransf 26.6 77 0.0017 29.3 3.5 111 93-209 81-193 (218)
102 PF03141 Methyltransf_29: Puta 26.1 1.1E+02 0.0025 31.2 4.8 121 75-201 103-226 (506)
103 PF02887 PK_C: Pyruvate kinase 26.0 24 0.00052 27.2 0.1 21 116-136 57-77 (117)
104 PF08534 Redoxin: Redoxin; In 25.9 1.2E+02 0.0027 23.0 4.0 41 159-199 87-136 (146)
105 PRK00107 gidB 16S rRNA methylt 25.7 1.7E+02 0.0036 25.0 5.2 108 93-209 47-159 (187)
106 PF02677 DUF208: Uncharacteriz 24.8 35 0.00077 30.0 1.0 41 95-135 2-54 (176)
107 PRK11783 rlmL 23S rRNA m(2)G24 24.7 85 0.0018 31.9 3.7 120 93-214 540-676 (702)
108 PRK04266 fibrillarin; Provisio 24.7 1.8E+02 0.004 25.5 5.3 95 93-193 74-175 (226)
109 PRK06922 hypothetical protein; 24.6 76 0.0016 33.3 3.4 99 93-193 420-536 (677)
110 PF01558 POR: Pyruvate ferredo 24.4 92 0.002 25.2 3.2 78 105-196 11-88 (173)
111 PF03815 LCCL: LCCL domain; I 24.3 37 0.0008 26.5 0.9 41 92-141 18-58 (96)
112 COG0312 TldD Predicted Zn-depe 24.3 24 0.00053 33.2 -0.1 106 81-199 260-378 (454)
113 PLN02366 spermidine synthase 24.3 1.5E+02 0.0032 27.5 4.9 122 68-198 71-211 (308)
114 PF13458 Peripla_BP_6: Peripla 24.2 3.6E+02 0.0077 22.8 6.8 37 177-214 182-218 (343)
115 cd06565 GH20_GcnA-like Glycosy 23.8 1.7E+02 0.0036 26.6 5.1 144 78-248 113-267 (301)
116 COG2226 UbiE Methylase involve 23.5 69 0.0015 29.0 2.6 103 92-198 52-162 (238)
117 TIGR03533 L3_gln_methyl protei 23.0 2.3E+02 0.005 25.4 5.7 65 93-162 123-195 (284)
118 KOG0829 60S ribosomal protein 22.8 33 0.00072 30.6 0.4 10 144-153 141-150 (169)
119 PF13659 Methyltransf_26: Meth 22.7 52 0.0011 23.9 1.4 70 93-162 2-76 (117)
120 PF01102 Glycophorin_A: Glycop 22.7 59 0.0013 27.2 1.8 12 40-51 77-88 (122)
121 PF15060 PPDFL: Differentiatio 22.5 14 0.00031 30.9 -1.7 16 214-229 48-63 (110)
122 PRK08433 flagellar motor switc 22.3 23 0.00049 29.1 -0.6 30 174-203 61-90 (111)
123 PF01052 SpoA: Surface present 22.3 21 0.00046 25.6 -0.7 29 174-202 37-65 (77)
124 COG4088 Predicted nucleotide k 22.3 47 0.001 31.4 1.3 13 189-201 3-15 (261)
125 cd01911 proteasome_alpha prote 22.2 1.4E+02 0.003 25.1 4.0 67 159-227 39-114 (209)
126 PRK10927 essential cell divisi 22.1 1.1E+02 0.0024 29.6 3.8 68 187-257 246-316 (319)
127 PF01630 Glyco_hydro_56: Hyalu 21.9 31 0.00068 33.1 0.1 44 164-207 274-318 (337)
128 PF01978 TrmB: Sugar-specific 21.8 50 0.0011 23.0 1.1 21 127-147 38-58 (68)
129 PRK04011 peptide chain release 21.5 37 0.0008 32.6 0.5 43 184-227 83-130 (411)
130 PF10007 DUF2250: Uncharacteri 21.3 62 0.0013 25.8 1.7 36 98-144 19-54 (92)
131 PF08346 AntA: AntA/AntB antir 21.1 65 0.0014 24.4 1.7 33 203-236 3-35 (71)
132 PRK14958 DNA polymerase III su 21.1 40 0.00086 33.2 0.6 46 152-205 10-56 (509)
133 cd08815 Death_TNFRSF25_DR3 Dea 21.1 73 0.0016 25.1 2.0 21 219-239 12-32 (77)
134 PF01299 Lamp: Lysosome-associ 20.9 53 0.0011 29.7 1.3 16 36-51 279-294 (306)
135 smart00751 BSD domain in trans 20.9 66 0.0014 22.2 1.5 26 203-228 22-47 (51)
136 TIGR00755 ksgA dimethyladenosi 20.5 1.5E+02 0.0032 25.6 3.9 81 92-179 30-116 (253)
137 PRK06762 hypothetical protein; 20.4 2.2E+02 0.0048 22.3 4.6 35 189-223 4-40 (166)
138 cd06307 PBP1_uncharacterized_s 20.2 90 0.002 25.6 2.4 51 163-215 37-88 (275)
139 PF05624 LSR: Lipolysis stimul 20.0 56 0.0012 24.2 1.0 17 33-49 2-18 (49)
140 TIGR03438 probable methyltrans 20.0 3.2E+02 0.007 24.5 6.1 99 93-192 65-175 (301)
No 1
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.57 E-value=3e-08 Score=86.60 Aligned_cols=144 Identities=22% Similarity=0.400 Sum_probs=108.1
Q ss_pred cceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcc-eeeeeecCCCC-CCCCCccEEEeccccccc
Q 024788 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI-VRVADIKFPLP-YRAKSFPLVIVSDALDYL 169 (262)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGi-VRvADIkfpLP-YR~kSFslVivSDaLDyL 169 (262)
-.+||++|-........|.++.++++.|||-. +.+..+-|+||+ |--.|+.-.|+ |..+||+.||.|++|..+
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid-----~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDEKQVDGYGVEID-----PDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred CCEEEecCCCchHHHHHHHHhcCCeEEEEecC-----HHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 37999999999999999999999999999832 345777799999 99999999997 999999999999999998
Q ss_pred ChhhhccccccchhhccCceEEEecCCcchhhhHHhhhhcCCcccc--ccchhHHHHHHHhccccchHHHHHHHHHHhhc
Q 024788 170 SPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAKM--RSSSWWIRYFVQTSLEENEPAVKKFEQAASKK 247 (262)
Q Consensus 170 spryLNkTLPeLaRvsadglViF~G~PgqqrakvaelskfgrpaK~--rsssWW~r~F~qt~LeEnE~a~KkFeqa~~k~ 247 (262)
++-.+.|-|+.||...++|-|.-+ |--|.+. +|---||--.. =.-+|+ -+-++- =-.+|-||..+.+.
T Consensus 89 --~~P~~vL~EmlRVgr~~IVsFPNF-g~W~~R~-~l~~~GrmPvt~~lPy~WY----dTPNih--~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 89 --RRPDEVLEEMLRVGRRAIVSFPNF-GHWRNRL-QLLLRGRMPVTKALPYEWY----DTPNIH--LCTIKDFEDLCREL 158 (193)
T ss_pred --hHHHHHHHHHHHhcCeEEEEecCh-HHHHHHH-HHHhcCCCCCCCCCCCccc----CCCCcc--cccHHHHHHHHHHC
Confidence 567788999999999999988654 2233332 22223442222 234675 222222 23578888888876
Q ss_pred cCC
Q 024788 248 SYK 250 (262)
Q Consensus 248 sY~ 250 (262)
..+
T Consensus 159 ~i~ 161 (193)
T PF07021_consen 159 GIR 161 (193)
T ss_pred CCE
Confidence 653
No 2
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.34 E-value=0.00079 Score=55.53 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=88.0
Q ss_pred ceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcc-----eeeeeecCCCCCCCCCccEEEeccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGI-----VRVADIKFPLPYRAKSFPLVIVSDA 165 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGi-----VRvADIkfpLPYR~kSFslVivSDa 165 (262)
.+||-+|-.+-.+...|.+. ..+.+|||+-+ ++.+..+. -..+. ..++|+... | ++|++|+.+|.
T Consensus 57 ~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~i~~~~~d~~~~-~---~~fD~ii~~~~ 128 (219)
T TIGR02021 57 KRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRA---QGRDVAGNVEFEVNDLLSL-C---GEFDIVVCMDV 128 (219)
T ss_pred CEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHH---HhcCCCCceEEEECChhhC-C---CCcCEEEEhhH
Confidence 57999999998887777664 45788887642 22233332 22332 456777653 3 89999999999
Q ss_pred ccccChhhhccccccchhhccCceEEEecCCcchhhhHHhhhhc-C-----CccccccchhHHHHHHHhcccc
Q 024788 166 LDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKF-G-----RPAKMRSSSWWIRYFVQTSLEE 232 (262)
Q Consensus 166 LDyLspryLNkTLPeLaRvsadglViF~G~Pgqqrakvaelskf-g-----rpaK~rsssWW~r~F~qt~LeE 232 (262)
+.|+++..+.+.+=++.|+...++++.....+........+..+ + .++-..+..+|.+++.++|++-
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v 201 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKI 201 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCcee
Confidence 99999888999999999998887776655444332222222222 2 2334456777888887777654
No 3
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.33 E-value=0.0002 Score=53.81 Aligned_cols=133 Identities=22% Similarity=0.259 Sum_probs=85.2
Q ss_pred cccceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEeccccccc
Q 024788 90 DSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYL 169 (262)
Q Consensus 90 dsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDyL 169 (262)
+.=.+||-+|+.+......| ++...+..|+||.+-.... +-.+......--.+...++|++|+.+++|.|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l-~~~~~~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~ 91 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL-AKRGFEVTGVDISPQMIEK--------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL 91 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH-HHTTSEEEEEESSHHHHHH--------TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred CCCCEEEEEcCCCCHHHHHH-HHhCCEEEEEECCHHHHhh--------hhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence 45669999999999665555 6777799999998533222 11111111111344577899999999999999
Q ss_pred Chhhhccccccchhhcc-CceEEEecC-Ccc-hhhhHHhhhhcCCc----cccccchhHHHHHHHhccccch
Q 024788 170 SPKYLNKTLPDLARVAS-DGVLIFAGY-PGQ-QRAKVAELSKFGRP----AKMRSSSWWIRYFVQTSLEENE 234 (262)
Q Consensus 170 spryLNkTLPeLaRvsa-dglViF~G~-Pgq-qrakvaelskfgrp----aK~rsssWW~r~F~qt~LeEnE 234 (262)
. .....|-++.|+-. +|+++|+-. ..+ ......+. .+.++ ...-+..=|.+.|.|+|++.-|
T Consensus 92 ~--d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 92 P--DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKW-RYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp S--HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHC-CGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred c--cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhc-CCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 8 37788999998765 577776652 211 11112221 23333 3455666678888888887654
No 4
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.32 E-value=0.0011 Score=54.07 Aligned_cols=132 Identities=21% Similarity=0.317 Sum_probs=83.9
Q ss_pred ceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcc-eeeeeecCCC-CCCCCCccEEEecccccccC
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI-VRVADIKFPL-PYRAKSFPLVIVSDALDYLS 170 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGi-VRvADIkfpL-PYR~kSFslVivSDaLDyLs 170 (262)
.+||.+|..+..+...|.+.....++|||+-+ +.-..|+ ++|+ +..+|+.-.+ |+..++|++|+.+++|.|+.
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~--~~i~~a~---~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQ--DGVLACV---ARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCH--HHHHHHH---HcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 37999999999887777666566779998653 1111222 2332 3457776445 47788999999999999985
Q ss_pred hhhhccccccchhhccCceEEEecCCcch-hhhHHhhhh--c------------CCccccccchhHHHHHHHhccccc
Q 024788 171 PKYLNKTLPDLARVASDGVLIFAGYPGQQ-RAKVAELSK--F------------GRPAKMRSSSWWIRYFVQTSLEEN 233 (262)
Q Consensus 171 pryLNkTLPeLaRvsadglViF~G~Pgqq-rakvaelsk--f------------grpaK~rsssWW~r~F~qt~LeEn 233 (262)
...+.|-++.|+...+++.|..+.-.+ +.+. +.+ + ..+++..+-.++.+.+.++|++--
T Consensus 90 --d~~~~l~e~~r~~~~~ii~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~ 163 (194)
T TIGR02081 90 --NPEEILDEMLRVGRHAIVSFPNFGYWRVRWSI--LTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRIL 163 (194)
T ss_pred --CHHHHHHHHHHhCCeEEEEcCChhHHHHHHHH--HhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEE
Confidence 356778899999887766654432222 1111 111 0 013455666677777777777643
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.27 E-value=0.00035 Score=47.85 Aligned_cols=92 Identities=22% Similarity=0.322 Sum_probs=67.9
Q ss_pred eeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcc--eeeeeecCCCCCCCCCccEEEecccccccChhh
Q 024788 96 LHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI--VRVADIKFPLPYRAKSFPLVIVSDALDYLSPKY 173 (262)
Q Consensus 96 LHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGi--VRvADIkfpLPYR~kSFslVivSDaLDyLspry 173 (262)
|-+|-.+......|.+....+.+|+|+..- .-..|+....+.- ++.+|+. .||+...||++|+..+++.|+ ..
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~--~~~~~~~~~~~~~~~~~~~d~~-~l~~~~~sfD~v~~~~~~~~~--~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEE--MLEQARKRLKNEGVSFRQGDAE-DLPFPDNSFDVVFSNSVLHHL--ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HH--HHHHHHHHTTTSTEEEEESBTT-SSSS-TT-EEEEEEESHGGGS--SH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHH--HHHHHHhcccccCchheeehHH-hCccccccccccccccceeec--cC
Confidence 457888888888888888899999998753 4455666555443 7788854 559999999999999999999 78
Q ss_pred hccccccchhhcc-CceEEE
Q 024788 174 LNKTLPDLARVAS-DGVLIF 192 (262)
Q Consensus 174 LNkTLPeLaRvsa-dglViF 192 (262)
..+.+-|+.||-. +|.++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 8889999999754 455443
No 6
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.08 E-value=0.00053 Score=57.94 Aligned_cols=98 Identities=19% Similarity=0.305 Sum_probs=74.8
Q ss_pred ceeeeecCCcchhhhhcccc-ccccccccccccccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccccccCh
Q 024788 93 HKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 171 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkE-e~tEAWGVEPydied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDyLsp 171 (262)
.+||-||-.|-.....|.+. ...+..|||+.+ ++-..|+....+--+..+|+.- |+...+|++|+..++|.|++|
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~--~~l~~A~~~~~~~~~~~~d~~~--~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINE--YAVEKAKAYLPNINIIQGSLFD--PFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH--HHHHHHHhhCCCCcEEEeeccC--CCCCCCEEEEEECChhhhCCH
Confidence 57999999999888888765 467899997754 2223333323334466788765 788899999999999999999
Q ss_pred hhhccccccchhhccCceEEEecC
Q 024788 172 KYLNKTLPDLARVASDGVLIFAGY 195 (262)
Q Consensus 172 ryLNkTLPeLaRvsadglViF~G~ 195 (262)
.++.+.+-++.|++.. .|+++.+
T Consensus 121 ~~~~~~l~el~r~~~~-~v~i~e~ 143 (204)
T TIGR03587 121 DNLPTAYRELYRCSNR-YILIAEY 143 (204)
T ss_pred HHHHHHHHHHHhhcCc-EEEEEEe
Confidence 9999999999999854 5555554
No 7
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.08 E-value=0.00076 Score=61.98 Aligned_cols=135 Identities=16% Similarity=0.217 Sum_probs=92.3
Q ss_pred ceeeeecCCcchhhhhccccccccccccccccccchhHHHHhh---hhhcceeeeeec-CCCCCCCCCccEEEecccccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSL---VHKGIVRVADIK-FPLPYRAKSFPLVIVSDALDY 168 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsL---vrKGiVRvADIk-fpLPYR~kSFslVivSDaLDy 168 (262)
.+||-+|..+..+...|.+. ..+..|||+.+- -.+ .++.+ ...--+..+|+. ..+|+-..+|++|+.+.+|.|
T Consensus 39 ~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~-~l~-~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKK-AGQVIALDFIES-VIK-KNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHH-HHH-HHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence 47999999999888777765 457888886441 111 12221 111224456763 345565789999999999999
Q ss_pred cChhhhccccccchhh-ccCceEEEecCCcchhhhHHhhhhcCCccccccchhHHHHHHHhccccc
Q 024788 169 LSPKYLNKTLPDLARV-ASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEEN 233 (262)
Q Consensus 169 LspryLNkTLPeLaRv-sadglViF~G~PgqqrakvaelskfgrpaK~rsssWW~r~F~qt~LeEn 233 (262)
+++.-+.+.|-++.|+ ..+|+++|.-...-+. .++..-..|-..|+..||.+.|.+.++...
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFRESCFHQS---GDSKRKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC---CcccccCCCCeecChHHHHHHHHHheeccC
Confidence 9998888999999996 5577887764332111 223334566777889999999999886544
No 8
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.71 E-value=0.014 Score=47.57 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=69.0
Q ss_pred hhhhHHHHHhcc-ccceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcc--eeeeeecCCCCCC
Q 024788 79 RAIPILKKAYGD-SMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGI--VRVADIKFPLPYR 153 (262)
Q Consensus 79 ~aiP~LkkaYGd-sM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGi--VRvADIkfpLPYR 153 (262)
.++..|+. ||. .-.+||-||..|-.....|.+.. .+..|+|+-+ ++.+..++...-.... ...+|+ +.-
T Consensus 51 ~~~~~l~~-~~~~~~~~vLDvGcG~G~~~~~l~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~----~~~ 124 (230)
T PRK07580 51 TVLSWLPA-DGDLTGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL----ESL 124 (230)
T ss_pred HHHHHHHh-cCCCCCCEEEEEeCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc----hhc
Confidence 34445543 222 34689999999988777777653 4567776522 2333333322111011 334553 333
Q ss_pred CCCccEEEecccccccChhhhccccccchhhccCceEEE
Q 024788 154 AKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIF 192 (262)
Q Consensus 154 ~kSFslVivSDaLDyLspryLNkTLPeLaRvsadglViF 192 (262)
..+|++|+.++++.+.+...+.+.+-+|.|+...+++|.
T Consensus 125 ~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 125 LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 588999999999999988889999999999877666543
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=96.65 E-value=0.0081 Score=52.27 Aligned_cols=159 Identities=16% Similarity=0.200 Sum_probs=95.7
Q ss_pred CccchHHHHhhhhHHHHHhccccceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcce--eeee
Q 024788 70 DFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIV--RVAD 145 (262)
Q Consensus 70 ~~sCt~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGiV--RvAD 145 (262)
++-=+.++..+.-+|++.-=+.-.+||.||..+=.....|.+.-..+..||++-+ ++.+..+++. ...| ..+|
T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D 107 (263)
T PTZ00098 31 DYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEAND 107 (263)
T ss_pred CCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECC
Confidence 4444444444444444443244568999999886655555443345677777642 2333333332 1233 3466
Q ss_pred ecCCCCCCCCCccEEEecccccccChhhhccccccchhh-ccCceEEEecCCc----chhhhHHhhhhcCCccccccchh
Q 024788 146 IKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARV-ASDGVLIFAGYPG----QQRAKVAELSKFGRPAKMRSSSW 220 (262)
Q Consensus 146 IkfpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRv-sadglViF~G~Pg----qqrakvaelskfgrpaK~rsssW 220 (262)
+. .+|+...+|++|+..|++-++++.-..+.|-++.|+ ..+|.++++.+.- .-.....+..+ .|...+.+...
T Consensus 108 ~~-~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 185 (263)
T PTZ00098 108 IL-KKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIK-KRKYTLIPIQE 185 (263)
T ss_pred cc-cCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHH-hcCCCCCCHHH
Confidence 63 578888999999999999898776777888888886 6678888886421 11111222111 12234556677
Q ss_pred HHHHHHHhccccc
Q 024788 221 WIRYFVQTSLEEN 233 (262)
Q Consensus 221 W~r~F~qt~LeEn 233 (262)
+.+.+.++|++.-
T Consensus 186 ~~~~l~~aGF~~v 198 (263)
T PTZ00098 186 YGDLIKSCNFQNV 198 (263)
T ss_pred HHHHHHHCCCCee
Confidence 7788888887653
No 10
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=96.48 E-value=0.022 Score=45.60 Aligned_cols=97 Identities=28% Similarity=0.381 Sum_probs=63.7
Q ss_pred ceeeeecCCcchhhhhccccc-cccccccccccccchhHHHHhhhhh-cceeeeeecCCCCCCCCCccEEEecccccccC
Q 024788 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHK-GIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 170 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPydied~d~~CKsLvrK-GiVRvADIkfpLPYR~kSFslVivSDaLDyLs 170 (262)
.+||.+|..+-.....|++.. .....|+|+-. +.-..++..... -.+-++|+. .+|+-..+|++||.+..+.|+.
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISA--GMLAQAKTKLSENVQFICGDAE-KLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChH--HHHHHHHHhcCCCCeEEecchh-hCCCCCCceeEEEEhhhhhhcc
Confidence 579999999988777666553 23347777632 222233332221 134456665 4566678999999999999884
Q ss_pred hhhhccccccchhh-ccCceEEEec
Q 024788 171 PKYLNKTLPDLARV-ASDGVLIFAG 194 (262)
Q Consensus 171 pryLNkTLPeLaRv-sadglViF~G 194 (262)
. +++.|.++.|+ ..+|.++++.
T Consensus 113 ~--~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 113 D--LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred C--HHHHHHHHHHHcCCCcEEEEEe
Confidence 3 56788888885 5578888875
No 11
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=95.98 E-value=0.016 Score=47.44 Aligned_cols=133 Identities=16% Similarity=0.245 Sum_probs=79.7
Q ss_pred ceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHHhhhhhc--ceeeeee-cCCCCCCCCCccEEEecccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKG--IVRVADI-KFPLPYRAKSFPLVIVSDAL 166 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPyd--ied~d~~CKsLvrKG--iVRvADI-kfpLPYR~kSFslVivSDaL 166 (262)
++||.||..+......+.++- +.+..|+++-+ ++.+..+|+..--.+ -+...|+ +. |+ +.+|++|+..+.+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~-~~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PF-PDTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC--CC-CCCCCEeehHHHH
Confidence 479999999988777776653 45677776521 222333333210011 3445676 33 33 4689999999999
Q ss_pred cccChhhhccccccchh-hccCceEEEecCCcchhhhHHhhhhcCCccccccchhHHHHHHHhccccc
Q 024788 167 DYLSPKYLNKTLPDLAR-VASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEEN 233 (262)
Q Consensus 167 DyLspryLNkTLPeLaR-vsadglViF~G~PgqqrakvaelskfgrpaK~rsssWW~r~F~qt~LeEn 233 (262)
.++.. ....|-++.| +..+|.++++....+....... .+ ...-+.+...|.+.+.++|++-.
T Consensus 78 ~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--~~-~~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 78 HHIKD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIEH--EE-TTSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred HhCCC--HHHHHHHHHHHcCCCCEEEEEEcccccCccccc--cc-cccccCCHHHHHHHHHHCCCeEE
Confidence 88753 3566777776 5778888887643222111110 01 11115567789999999887654
No 12
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=95.58 E-value=0.055 Score=45.46 Aligned_cols=98 Identities=20% Similarity=0.248 Sum_probs=67.2
Q ss_pred cceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccccccCh
Q 024788 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 171 (262)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDyLsp 171 (262)
-.+||.+|-.|..+...| .+...+..|+|+.. +.-..|+.....--+..+|+.- +|+...+|++|+.+.++.+..
T Consensus 43 ~~~vLDiGcG~G~~~~~l-~~~~~~v~~~D~s~--~~l~~a~~~~~~~~~~~~d~~~-~~~~~~~fD~V~s~~~l~~~~- 117 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYW-RERGSQVTALDLSP--PMLAQARQKDAADHYLAGDIES-LPLATATFDLAWSNLAVQWCG- 117 (251)
T ss_pred CCeEEEeeCCCCHHHHHH-HHcCCeEEEEECCH--HHHHHHHhhCCCCCEEEcCccc-CcCCCCcEEEEEECchhhhcC-
Confidence 468999999997654444 44456778887643 2222333322222345788743 677788999999999998864
Q ss_pred hhhccccccchhhcc-CceEEEecC
Q 024788 172 KYLNKTLPDLARVAS-DGVLIFAGY 195 (262)
Q Consensus 172 ryLNkTLPeLaRvsa-dglViF~G~ 195 (262)
.+.+.|.++.|+-. +|+++|+.+
T Consensus 118 -d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 118 -NLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred -CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 46789999999866 588888764
No 13
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.54 E-value=0.17 Score=42.47 Aligned_cols=116 Identities=19% Similarity=0.295 Sum_probs=77.6
Q ss_pred hHHHHhhhhHHHHHhccccceeeeecCCcchhhhhcccc---ccccccccccccccchhHHHHhhhhh-c-----ceeee
Q 024788 74 TSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKE---EETEAWGVEPYDIEDADARCKSLVHK-G-----IVRVA 144 (262)
Q Consensus 74 t~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkE---e~tEAWGVEPydied~d~~CKsLvrK-G-----iVRvA 144 (262)
-.++...|=-|.+.+...-.+||.+|-.|=.....|++. .+.+..|||+.+ +.-..|+..++. + -+...
T Consensus 36 y~~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~--~ml~~a~~~~~~~~~~~~v~~~~~ 113 (239)
T TIGR00740 36 YSNIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ--PMVERCRQHIAAYHSEIPVEILCN 113 (239)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEEC
Confidence 345555555566667666678999998886666555553 467788888754 333344433332 1 23455
Q ss_pred eecCCCCCCCCCccEEEecccccccChhhhccccccchhhc-cCceEEEec
Q 024788 145 DIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIFAG 194 (262)
Q Consensus 145 DIkfpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvs-adglViF~G 194 (262)
|+. -+|. ++|++|+.+.+|.|+++....+.|.++.|+- .+|.++++.
T Consensus 114 d~~-~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 114 DIR-HVEI--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred Chh-hCCC--CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 663 2333 3589999999999999888888899999875 578887774
No 14
>PLN02244 tocopherol O-methyltransferase
Probab=95.36 E-value=0.088 Score=47.64 Aligned_cols=136 Identities=21% Similarity=0.359 Sum_probs=87.2
Q ss_pred ccceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhh-cc-----eeeeeecCCCCCCCCCccEEEecc
Q 024788 91 SMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-GI-----VRVADIKFPLPYRAKSFPLVIVSD 164 (262)
Q Consensus 91 sM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrK-Gi-----VRvADIkfpLPYR~kSFslVivSD 164 (262)
.-.+||-||-.+-.....|.+.-+.+.-||++.+- .-..++.+.++ |+ +.++|+ ..+|+...+|++|+..+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~--~i~~a~~~~~~~g~~~~v~~~~~D~-~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPV--QAARANALAAAQGLSDKVSFQVADA-LNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHH--HHHHHHHHHHhcCCCCceEEEEcCc-ccCCCCCCCccEEEECC
Confidence 34689999999888776666654567778775431 22334444332 32 456776 45788889999999999
Q ss_pred cccccChhhhccccccchhhcc-CceEEEecC------Ccch------hhhHHhhh-hcCCccccccchhHHHHHHHhcc
Q 024788 165 ALDYLSPKYLNKTLPDLARVAS-DGVLIFAGY------PGQQ------RAKVAELS-KFGRPAKMRSSSWWIRYFVQTSL 230 (262)
Q Consensus 165 aLDyLspryLNkTLPeLaRvsa-dglViF~G~------Pgqq------rakvaels-kfgrpaK~rsssWW~r~F~qt~L 230 (262)
++.++.. ..+.|-|+.|+-. +|.++++.. |+.. +.-..++. .+.-| ...+..+|.+.+.++|+
T Consensus 195 ~~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p-~~~s~~~~~~~l~~aGf 271 (340)
T PLN02244 195 SGEHMPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLP-AWCSTSDYVKLAESLGL 271 (340)
T ss_pred chhccCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCC-CCCCHHHHHHHHHHCCC
Confidence 9999864 3467788888865 567776542 2221 11112221 12222 34578899999999998
Q ss_pred cc
Q 024788 231 EE 232 (262)
Q Consensus 231 eE 232 (262)
+.
T Consensus 272 ~~ 273 (340)
T PLN02244 272 QD 273 (340)
T ss_pred Ce
Confidence 75
No 15
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.72 E-value=0.16 Score=43.33 Aligned_cols=100 Identities=15% Similarity=0.126 Sum_probs=66.1
Q ss_pred ccccceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcc-----eeeeeecCCCCCCCCCccEEE
Q 024788 89 GDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGI-----VRVADIKFPLPYRAKSFPLVI 161 (262)
Q Consensus 89 GdsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGi-----VRvADIkfpLPYR~kSFslVi 161 (262)
+..-.+||-+|-.|......|.+. ..+..|||+.+ ++-+..+|+. .|+ +..+|+.--.|.-..+|++|+
T Consensus 42 ~~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~---~g~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 42 PPRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEA---KGVSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHh---cCCccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 344469999999999877777665 57888988753 2334444433 342 344566432234467999999
Q ss_pred ecccccccChhhhccccccchhhcc-CceEEEec
Q 024788 162 VSDALDYLSPKYLNKTLPDLARVAS-DGVLIFAG 194 (262)
Q Consensus 162 vSDaLDyLspryLNkTLPeLaRvsa-dglViF~G 194 (262)
..+.|.|++..- +.|.++.|+-. +|+++++-
T Consensus 118 ~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 118 FHAVLEWVADPK--SVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred ehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEEE
Confidence 999999996432 56778887654 56665543
No 16
>PRK05785 hypothetical protein; Provisional
Probab=94.43 E-value=0.15 Score=43.59 Aligned_cols=98 Identities=23% Similarity=0.255 Sum_probs=68.0
Q ss_pred cceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccccccCh
Q 024788 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 171 (262)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDyLsp 171 (262)
-.+||-||-.|..+...|.+.-+.+..|||+-+ +.=..++ .|.-...+|.. .||+...||++|+.+.+|.++..
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~--~Ml~~a~---~~~~~~~~d~~-~lp~~d~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE--NMLKMNL---VADDKVVGSFE-ALPFRDKSFDVVMSSFALHASDN 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCH--HHHHHHH---hccceEEechh-hCCCCCCCEEEEEecChhhccCC
Confidence 469999999999876666554356888988742 1111111 12223356654 57899999999999999988753
Q ss_pred hhhccccccchhhccCce-EEEecCCc
Q 024788 172 KYLNKTLPDLARVASDGV-LIFAGYPG 197 (262)
Q Consensus 172 ryLNkTLPeLaRvsadgl-ViF~G~Pg 197 (262)
+.+.|-|+.||-...+ ++-.+.|.
T Consensus 126 --~~~~l~e~~RvLkp~~~ile~~~p~ 150 (226)
T PRK05785 126 --IEKVIAEFTRVSRKQVGFIAMGKPD 150 (226)
T ss_pred --HHHHHHHHHHHhcCceEEEEeCCCC
Confidence 5789999999998765 44445664
No 17
>PRK06202 hypothetical protein; Provisional
Probab=94.42 E-value=0.064 Score=44.84 Aligned_cols=100 Identities=22% Similarity=0.164 Sum_probs=66.3
Q ss_pred cccceeeeecCCcchhhhhcccc-----ccccccccccccccchhHHHHhhhh-hc-ceeeeeecCCCCCCCCCccEEEe
Q 024788 90 DSMHKVLHVGPDTCSVVSTLLKE-----EETEAWGVEPYDIEDADARCKSLVH-KG-IVRVADIKFPLPYRAKSFPLVIV 162 (262)
Q Consensus 90 dsM~kVLHVGPdtC~VVs~LLkE-----e~tEAWGVEPydied~d~~CKsLvr-KG-iVRvADIkfpLPYR~kSFslViv 162 (262)
+.-.+||-+|-.|-.+...|.+. ...+..|||+.+ +.-..++.... .+ -+++.|.. -+|....+|++|+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~-~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP--RAVAFARANPRRPGVTFRQAVSD-ELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH--HHHHHHHhccccCCCeEEEEecc-cccccCCCccEEEE
Confidence 34468999999987765555432 124788888754 23333333322 12 23444432 12334689999999
Q ss_pred cccccccChhhhccccccchhhccCceEEE
Q 024788 163 SDALDYLSPKYLNKTLPDLARVASDGVLIF 192 (262)
Q Consensus 163 SDaLDyLspryLNkTLPeLaRvsadglViF 192 (262)
+++|.|+.+..+.+.|-++.|+...+++|.
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALARRLVLHN 165 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcCeeEEEe
Confidence 999999999999999999999998555444
No 18
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=94.42 E-value=0.31 Score=41.70 Aligned_cols=154 Identities=17% Similarity=0.214 Sum_probs=93.2
Q ss_pred ccchHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccc---ccccccccccccc--ccchhHHHHhhhhhcce--ee
Q 024788 71 FSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLK---EEETEAWGVEPYD--IEDADARCKSLVHKGIV--RV 143 (262)
Q Consensus 71 ~sCt~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLk---Ee~tEAWGVEPyd--ied~d~~CKsLvrKGiV--Rv 143 (262)
.-|-.++++.+-.+-+.+-..-.+||.||-.|-.....|++ ....+.+|||+-+ ++-+..+....-...-| ..
T Consensus 36 ~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~ 115 (247)
T PRK15451 36 VPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIE 115 (247)
T ss_pred CCChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEe
Confidence 34555666665555554433446799999998877665654 4567899998743 22233332211011112 34
Q ss_pred eeecCCCCCCCCCccEEEecccccccChhhhccccccchhhc-cCceEEEec-CCcchhhhHHhhhhcCCccccccchhH
Q 024788 144 ADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIFAG-YPGQQRAKVAELSKFGRPAKMRSSSWW 221 (262)
Q Consensus 144 ADIkfpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvs-adglViF~G-~PgqqrakvaelskfgrpaK~rsssWW 221 (262)
+|+. .+|. ..|++||++-+|.+++|....+.+.++.|+- .+|.++++. +..+. ..+.++ .-..|
T Consensus 116 ~d~~-~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~-~~~~~~----------~~~~~ 181 (247)
T PRK15451 116 GDIR-DIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFED-AKVGEL----------LFNMH 181 (247)
T ss_pred CChh-hCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCc-chhHHH----------HHHHH
Confidence 5542 2343 3589999999999999988888999999875 567777765 44333 112211 12246
Q ss_pred HHHHHHhccccchHHHH
Q 024788 222 IRYFVQTSLEENEPAVK 238 (262)
Q Consensus 222 ~r~F~qt~LeEnE~a~K 238 (262)
.+|-.+.|..|.|-+.|
T Consensus 182 ~~~~~~~g~s~~ei~~~ 198 (247)
T PRK15451 182 HDFKRANGYSELEISQK 198 (247)
T ss_pred HHHHHHcCCCHHHHHHH
Confidence 66667778877766543
No 19
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=94.40 E-value=0.12 Score=41.23 Aligned_cols=98 Identities=23% Similarity=0.300 Sum_probs=59.5
Q ss_pred ceeeeecCCcchhhhhcccccc--ccccccccccccchhHHHHhhhh---hcceeeeeecCCCCCCCCCccEEEeccccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEE--TEAWGVEPYDIEDADARCKSLVH---KGIVRVADIKFPLPYRAKSFPLVIVSDALD 167 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~--tEAWGVEPydied~d~~CKsLvr---KGiVRvADIkfpLPYR~kSFslVivSDaLD 167 (262)
..||.+|..+-.....+++... .+..|+|+-+ +.-..|+.... +--+...|+. .+|+...+|++|+.+..+.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~--~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS--EMLEVAKKKSELPLNIEFIQADAE-ALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH--HHHHHHHHHhccCCCceEEecchh-cCCCCCCcEEEEEEeeeeC
Confidence 4799999888776666665544 3667776521 22223333221 1234456664 4667788999999988876
Q ss_pred ccChhhhccccccchh-hccCceEEEecC
Q 024788 168 YLSPKYLNKTLPDLAR-VASDGVLIFAGY 195 (262)
Q Consensus 168 yLspryLNkTLPeLaR-vsadglViF~G~ 195 (262)
++.. +-..|-++.+ +..+|.+++.++
T Consensus 118 ~~~~--~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 118 NVTD--IQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred Cccc--HHHHHHHHHHHcCCCcEEEEEEe
Confidence 6542 2234444444 356888888774
No 20
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=94.25 E-value=0.27 Score=45.17 Aligned_cols=133 Identities=18% Similarity=0.153 Sum_probs=81.4
Q ss_pred cceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhh------hcceeeeeecCCCCCCCCCccEEEec
Q 024788 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVH------KGIVRVADIKFPLPYRAKSFPLVIVS 163 (262)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvr------KGiVRvADIkfpLPYR~kSFslVivS 163 (262)
-.+||.+|=.|-.+--.|.+. ..+..|++..+ ++.+..+.+.... ..-..+.|+... ..+|++|+..
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv~~ 219 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVTCL 219 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEEEc
Confidence 458999999998877677665 45677776654 3445555444321 112345666432 5789999999
Q ss_pred ccccccChhhhccccccchhhccCceEEEecCCcchh----hhHHhhhhcCCccc-----cccchhHHHHHHHhcccc
Q 024788 164 DALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQR----AKVAELSKFGRPAK-----MRSSSWWIRYFVQTSLEE 232 (262)
Q Consensus 164 DaLDyLspryLNkTLPeLaRvsadglViF~G~Pgqqr----akvaelskfgrpaK-----~rsssWW~r~F~qt~LeE 232 (262)
|.|-|+...-+.+-+-.++++.. |.+|++-.|...- .++.+ .|+.|.+ +.+...+.+.+.+.|++-
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~l~~-g~liIs~~p~~~~~~~l~~~g~--~~~g~~~~~r~y~~s~eel~~lL~~AGf~v 294 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLASLAE-KRLIISFAPKTLYYDILKRIGE--LFPGPSKATRAYLHAEADVERALKKAGWKV 294 (315)
T ss_pred CEEEecCHHHHHHHHHHHHhhcC-CEEEEEeCCcchHHHHHHHHHh--hcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence 99998877666667777777765 4445554554321 11222 2433322 335566777777777653
No 21
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=93.86 E-value=0.17 Score=46.75 Aligned_cols=132 Identities=14% Similarity=0.172 Sum_probs=82.6
Q ss_pred ceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhh----hcceeeeeecCCCCCCCCCccEEEecccccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVH----KGIVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvr----KGiVRvADIkfpLPYR~kSFslVivSDaLDy 168 (262)
.+||-||-.+-...-.|.++-+.+..||++.+ ++-..++.-.. +--+..+|+. -+|+...+|++|+..+++.|
T Consensus 268 ~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~--~~l~~A~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 268 QKVLDVGCGIGGGDFYMAENFDVHVVGIDLSV--NMISFALERAIGRKCSVEFEVADCT-KKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CEEEEEeccCCHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHhhcCCCceEEEEcCcc-cCCCCCCCEEEEEECCcccc
Confidence 47999999987665556655566889998863 22223322211 1124456754 35666789999999999999
Q ss_pred cChhhhccccccchhhc-cCceEEEecC------CcchhhhHHhhhhcCCccccccchhHHHHHHHhccccc
Q 024788 169 LSPKYLNKTLPDLARVA-SDGVLIFAGY------PGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEEN 233 (262)
Q Consensus 169 LspryLNkTLPeLaRvs-adglViF~G~------PgqqrakvaelskfgrpaK~rsssWW~r~F~qt~LeEn 233 (262)
+..+ -+.|.++.|+- .+|.++++.+ |+.... ..+.+.|. .+.+...|.+.+.++|++.-
T Consensus 345 ~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~--~~~~~~g~--~~~~~~~~~~~l~~aGF~~i 410 (475)
T PLN02336 345 IQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFA--EYIKQRGY--DLHDVQAYGQMLKDAGFDDV 410 (475)
T ss_pred cCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHH--HHHHhcCC--CCCCHHHHHHHHHHCCCeee
Confidence 8532 25677888864 5677776632 222211 12233342 46777888888888887743
No 22
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=93.76 E-value=0.23 Score=45.62 Aligned_cols=133 Identities=21% Similarity=0.169 Sum_probs=80.0
Q ss_pred ceeeeecCCcchhhhhccccccccccccccccccc--hhHHHHhhhhhcceee--eeecCCCCCCCCCccEEEecccccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIED--ADARCKSLVHKGIVRV--ADIKFPLPYRAKSFPLVIVSDALDY 168 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied--~d~~CKsLvrKGiVRv--ADIkfpLPYR~kSFslVivSDaLDy 168 (262)
++||-||-.|-.....++++......||+|.+.-- +....+.+-..+.+.+ .|+. -+|.. .+|++|+...+|.|
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie-~lp~~-~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIE-QLHEL-YAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHH-HCCCC-CCcCEEEEcchhhc
Confidence 58999999999988888888766799999987421 1222222112222322 3332 13332 48999999999999
Q ss_pred cChhhhccccccchhh-ccCceEEEec--CCcchhhhHHhhhhcCCccccc------cchhHHHHHHHhcccc
Q 024788 169 LSPKYLNKTLPDLARV-ASDGVLIFAG--YPGQQRAKVAELSKFGRPAKMR------SSSWWIRYFVQTSLEE 232 (262)
Q Consensus 169 LspryLNkTLPeLaRv-sadglViF~G--~PgqqrakvaelskfgrpaK~r------sssWW~r~F~qt~LeE 232 (262)
+ +.....|-++.|+ ..+|.+|+.- ..|..... +--.+|-+||+ |.....+.+.++|++.
T Consensus 201 ~--~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~---l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~ 268 (314)
T TIGR00452 201 R--KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTV---LVPKDRYAKMKNVYFIPSVSALKNWLEKVGFEN 268 (314)
T ss_pred c--CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccc---cCchHHHHhccccccCCCHHHHHHHHHHCCCeE
Confidence 7 3456788899985 4567877653 22221110 01113334444 4555566666777654
No 23
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=93.65 E-value=0.44 Score=38.81 Aligned_cols=95 Identities=20% Similarity=0.301 Sum_probs=59.4
Q ss_pred ceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcc--eee--eeec-CCCCCCCCCccEEEeccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGI--VRV--ADIK-FPLPYRAKSFPLVIVSDA 165 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGi--VRv--ADIk-fpLPYR~kSFslVivSDa 165 (262)
.+||.+|..+-.....+.+. ..+..|+|+-. ++.+..++ .+.|+ +++ +|+. ++.+. +.+|.+|+.++.
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~---~~~~~~~~~~~~~d~~~~~~~~-~~~~D~i~~~~~ 121 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHA---KKDPLLKIEYRCTSVEDLAEKG-AKSFDVVTCMEV 121 (224)
T ss_pred CeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHH---HHcCCCceEEEeCCHHHhhcCC-CCCccEEEehhH
Confidence 48999999998776666554 34577777632 22333333 23444 443 3432 33333 578999999999
Q ss_pred ccccChhhhccccccchhh-ccCceEEEec
Q 024788 166 LDYLSPKYLNKTLPDLARV-ASDGVLIFAG 194 (262)
Q Consensus 166 LDyLspryLNkTLPeLaRv-sadglViF~G 194 (262)
+.+... ....|.++.++ ..+|.++++.
T Consensus 122 l~~~~~--~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 122 LEHVPD--PQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HHhCCC--HHHHHHHHHHhcCCCcEEEEEe
Confidence 988753 34677777665 5667777665
No 24
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=93.61 E-value=0.12 Score=33.96 Aligned_cols=97 Identities=24% Similarity=0.282 Sum_probs=59.0
Q ss_pred eeeeecCCcchhhhhccccccccccccccccccchhHHHHh-----hhhhcceeeeeecCCCCCCCCCccEEEecccccc
Q 024788 94 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKS-----LVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (262)
Q Consensus 94 kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKs-----LvrKGiVRvADIkfpLPYR~kSFslVivSDaLDy 168 (262)
++|++|..+-.....+++....+.+|+|+-+. +-..++. ...+--+...|+.-+.+....+|++|++...+.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPV--ALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 47899999887777777756677888875321 1112221 1122233445665555446778999999988877
Q ss_pred cChhhhccccccchh-hccCceEEEe
Q 024788 169 LSPKYLNKTLPDLAR-VASDGVLIFA 193 (262)
Q Consensus 169 LspryLNkTLPeLaR-vsadglViF~ 193 (262)
. +......+-.+.+ +..+|+++++
T Consensus 79 ~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4 3344444444333 4578888876
No 25
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=93.35 E-value=0.049 Score=39.22 Aligned_cols=89 Identities=25% Similarity=0.326 Sum_probs=46.1
Q ss_pred eeecCCcchhhhhcccc-cccccccccccc--ccchhHHHHhhhhhcc--eeeeeecCCCCCCCCCccEEEecccccccC
Q 024788 96 LHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLVHKGI--VRVADIKFPLPYRAKSFPLVIVSDALDYLS 170 (262)
Q Consensus 96 LHVGPdtC~VVs~LLkE-e~tEAWGVEPyd--ied~d~~CKsLvrKGi--VRvADIkfpLPYR~kSFslVivSDaLDyLs 170 (262)
|-||+.|......|+++ ...+-.|+++.. |+.+...-+..-.... ++..+.....+.-.++|++|+.++.|.|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 57899999999988877 677778887654 5555555555444332 33333333333334799999999999999
Q ss_pred hhhhccccccchhhcc
Q 024788 171 PKYLNKTLPDLARVAS 186 (262)
Q Consensus 171 pryLNkTLPeLaRvsa 186 (262)
+.+...|-.+.++=+
T Consensus 80 -~~~~~~l~~~~~~L~ 94 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLK 94 (99)
T ss_dssp -S-HHHHHHHHTTT-T
T ss_pred -hhHHHHHHHHHHHcC
Confidence 444455555555433
No 26
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=91.59 E-value=0.96 Score=39.48 Aligned_cols=127 Identities=16% Similarity=0.169 Sum_probs=79.1
Q ss_pred ccccCCccchHHHHhhhhHHHHHhcc------------------------ccceeeeecCCcchhhhhcccc--cccccc
Q 024788 65 SRIEGDFSCTSEIQRAIPILKKAYGD------------------------SMHKVLHVGPDTCSVVSTLLKE--EETEAW 118 (262)
Q Consensus 65 s~~eg~~sCt~eV~~aiP~LkkaYGd------------------------sM~kVLHVGPdtC~VVs~LLkE--e~tEAW 118 (262)
||-.+-.+|+.+|++...-.-+.|-. .-.+||-||-.|-...-.|.+. ...+.+
T Consensus 23 ~~~~~~~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~ 102 (261)
T PLN02233 23 SRRRDVVKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVM 102 (261)
T ss_pred hhcCChhhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEE
Confidence 44455667888888776655555532 1236888888887754444432 235788
Q ss_pred cccccc--ccchhHHHHhhhhh---c-ceeeeeecCCCCCCCCCccEEEecccccccChhhhccccccchhhccC-ceEE
Q 024788 119 GVEPYD--IEDADARCKSLVHK---G-IVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASD-GVLI 191 (262)
Q Consensus 119 GVEPyd--ied~d~~CKsLvrK---G-iVRvADIkfpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvsad-glVi 191 (262)
|||+-+ ++-+..+....... . -+..+|+ ..||+...||++|+.+.+|.++. -..+.|-|+.||-.. |.++
T Consensus 103 gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~-~~lp~~~~sfD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~ 179 (261)
T PLN02233 103 GLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA-TDLPFDDCYFDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVS 179 (261)
T ss_pred EEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc-ccCCCCCCCEeEEEEecccccCC--CHHHHHHHHHHHcCcCcEEE
Confidence 998764 22232221100011 1 1345665 35788888999999999998875 357789999998765 5555
Q ss_pred Eec
Q 024788 192 FAG 194 (262)
Q Consensus 192 F~G 194 (262)
++-
T Consensus 180 i~d 182 (261)
T PLN02233 180 ILD 182 (261)
T ss_pred EEE
Confidence 554
No 27
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=91.32 E-value=0.96 Score=38.12 Aligned_cols=101 Identities=19% Similarity=0.250 Sum_probs=65.7
Q ss_pred cccceeeeecCCcchhhhhccccc-cccccccccccccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccccc
Q 024788 90 DSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (262)
Q Consensus 90 dsM~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPydied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDy 168 (262)
+.-.+||.+|-.+..+...|.+.- ..+..|||+.+ +.-..++....+--+..+|+.-..| ..+|++|+.+.+|+|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~--~~i~~a~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSP--AMLAEARSRLPDCQFVEADIASWQP--PQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhCCCCeEEECchhccCC--CCCccEEEEccChhh
Confidence 344689999999998876665442 56889998864 2222233323223356678753222 458999999999999
Q ss_pred cChhhhccccccchhhcc-CceEEEecCCc
Q 024788 169 LSPKYLNKTLPDLARVAS-DGVLIFAGYPG 197 (262)
Q Consensus 169 LspryLNkTLPeLaRvsa-dglViF~G~Pg 197 (262)
+.. .-+.|.++.|+-. +|.+++.. |+
T Consensus 106 ~~d--~~~~l~~~~~~LkpgG~~~~~~-~~ 132 (258)
T PRK01683 106 LPD--HLELFPRLVSLLAPGGVLAVQM-PD 132 (258)
T ss_pred CCC--HHHHHHHHHHhcCCCcEEEEEC-CC
Confidence 853 2356777877744 77777753 44
No 28
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=90.98 E-value=0.72 Score=42.54 Aligned_cols=97 Identities=13% Similarity=0.184 Sum_probs=61.6
Q ss_pred ceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhh-hhhc-ceeeeeecCCCCCCCCCccEEEecccccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSL-VHKG-IVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsL-vrKG-iVRvADIkfpLPYR~kSFslVivSDaLDy 168 (262)
.+||-||-.+-.... .|.+.+.+.+|||+.+ ++-+..+.+.. .... -+..+|+. .||....+|++|+..+.|.+
T Consensus 133 ~~ILDIGCG~G~~s~-~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae-~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 133 LKFIDIGCGGGLLSE-PLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAE-KLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CEEEEeeCCCCHHHH-HHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHH-HhhhccCCCCEEEEhhHHHh
Confidence 379999998887644 4455567899999874 22222221100 0001 13344442 35556689999999999999
Q ss_pred cChhhhccccccchhhc-cCceEEEe
Q 024788 169 LSPKYLNKTLPDLARVA-SDGVLIFA 193 (262)
Q Consensus 169 LspryLNkTLPeLaRvs-adglViF~ 193 (262)
+... ...|.+++|+- .+|.++++
T Consensus 211 v~d~--~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 211 VANP--AEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred cCCH--HHHHHHHHHHcCCCcEEEEE
Confidence 9743 57888999885 55655555
No 29
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=90.81 E-value=0.6 Score=38.80 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=71.6
Q ss_pred cchHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhh-cc----eeeeee
Q 024788 72 SCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-GI----VRVADI 146 (262)
Q Consensus 72 sCt~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrK-Gi----VRvADI 146 (262)
.=+.++.+.++.++ -.+||-+|=.+......|.+. ..+..||++.+ ++-..++.+.++ |+ +.++|+
T Consensus 17 ~~~~~l~~~l~~~~------~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~--~~i~~a~~~~~~~~~~~v~~~~~d~ 87 (197)
T PRK11207 17 RTHSEVLEAVKVVK------PGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNP--MSIANLERIKAAENLDNLHTAVVDL 87 (197)
T ss_pred CChHHHHHhcccCC------CCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCH--HHHHHHHHHHHHcCCCcceEEecCh
Confidence 34556666666442 368999999887766555554 56777876643 334445555443 22 345777
Q ss_pred cCCCCCCCCCccEEEecccccccChhhhccccccchhhc-cCceEEE
Q 024788 147 KFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIF 192 (262)
Q Consensus 147 kfpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvs-adglViF 192 (262)
. .+++ +.+|++|+.+.++-|++|..+-+.+-+++|+- .+|.+++
T Consensus 88 ~-~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 88 N-NLTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred h-hCCc-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 4 2344 46799999999999999877777777777764 5676443
No 30
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=90.75 E-value=0.71 Score=38.18 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=57.9
Q ss_pred cceeeeecCCcchhhhhccccccccccccccc--cccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEeccccccc
Q 024788 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYL 169 (262)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPy--died~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDyL 169 (262)
-.+||.+|..+=.....+.+. ..+.+|+|+- -++-+..++.......-+...|+.--+.-....|.+||.+..+.+.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 457999999875555555543 4568888762 2222333332211111233344432222345789999999999987
Q ss_pred Chhhhccccccchhh-ccCceEEEecCC
Q 024788 170 SPKYLNKTLPDLARV-ASDGVLIFAGYP 196 (262)
Q Consensus 170 spryLNkTLPeLaRv-sadglViF~G~P 196 (262)
.. ....|-.+.|+ ..+|.++|+...
T Consensus 128 ~~--~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 128 PD--PASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CC--HHHHHHHHHHHcCCCcEEEEEecC
Confidence 42 23444444444 467888877643
No 31
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=90.67 E-value=0.53 Score=39.07 Aligned_cols=127 Identities=14% Similarity=0.172 Sum_probs=78.3
Q ss_pred hHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhh-cc---eeeeeecCC
Q 024788 74 TSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-GI---VRVADIKFP 149 (262)
Q Consensus 74 t~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrK-Gi---VRvADIkfp 149 (262)
..++.++++.++ -.+||-+|-.+.....-|.+. ..+..||++-+ ++-..++...++ |+ ..++|+. .
T Consensus 19 ~~~l~~~~~~~~------~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~-~ 88 (195)
T TIGR00477 19 HSAVREAVKTVA------PCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNP--ASIASVLDMKARENLPLRTDAYDIN-A 88 (195)
T ss_pred hHHHHHHhccCC------CCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCH--HHHHHHHHHHHHhCCCceeEeccch-h
Confidence 346677777653 258999999999877666653 45666665542 233334433332 32 3455764 2
Q ss_pred CCCCCCCccEEEecccccccChhhhccccccchhh-ccCce-EEEec---------CCcchhhhHHhhhhcCC
Q 024788 150 LPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARV-ASDGV-LIFAG---------YPGQQRAKVAELSKFGR 211 (262)
Q Consensus 150 LPYR~kSFslVivSDaLDyLspryLNkTLPeLaRv-sadgl-ViF~G---------~Pgqqrakvaelskfgr 211 (262)
+|+ +++|++|+.+..+-++++..+-+.+-++.|+ ..+|. +|+.. .|.+-+.+-.||.+.-+
T Consensus 89 ~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~ 160 (195)
T TIGR00477 89 AAL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA 160 (195)
T ss_pred ccc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC
Confidence 333 3689999999999999887777778888775 55675 44432 12344555555554443
No 32
>PRK08317 hypothetical protein; Provisional
Probab=90.46 E-value=1.1 Score=35.78 Aligned_cols=99 Identities=23% Similarity=0.305 Sum_probs=61.3
Q ss_pred ceeeeecCCcchhhhhcccc--cccccccccccc--ccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkE--e~tEAWGVEPyd--ied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDy 168 (262)
.+||.+|..+-.....+.+. ...+..|+++-+ ++.+..+....-.+--+..+|+. .+|+...+|++|+...++.+
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~~~~ 99 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSFDAVRSDRVLQH 99 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCceEEEEechhhc
Confidence 47999999986655555443 245778888743 23333332222222334556763 35667789999999999999
Q ss_pred cChhhhccccccchhh-ccCceEEEec
Q 024788 169 LSPKYLNKTLPDLARV-ASDGVLIFAG 194 (262)
Q Consensus 169 LspryLNkTLPeLaRv-sadglViF~G 194 (262)
+.- ....+.++.++ ..+|.+++..
T Consensus 100 ~~~--~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 100 LED--PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred cCC--HHHHHHHHHHHhcCCcEEEEEe
Confidence 853 34556666664 4567666654
No 33
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=90.44 E-value=0.53 Score=38.77 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=63.6
Q ss_pred ceeeeecCCcchhhhhcccc--cccccccccccc--ccchhHHHHhhhhhc-ceeeeeecCCCCCCCCCccEEEeccccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALD 167 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkE--e~tEAWGVEPyd--ied~d~~CKsLvrKG-iVRvADIkfpLPYR~kSFslVivSDaLD 167 (262)
.+||-+|-.|......|.+. ...+..|||+.+ ++-+..+++..--.. -+..+|+. .+|+...+|++|+.+..+.
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~V~~~~~l~ 125 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAM-ELPFDDNSFDYVTIGFGLR 125 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechh-cCCCCCCCccEEEEecccc
Confidence 58999999999987777654 346789988753 333444444321111 12345652 3566678999999998888
Q ss_pred ccChhhhccccccchhhcc-CceEEEe
Q 024788 168 YLSPKYLNKTLPDLARVAS-DGVLIFA 193 (262)
Q Consensus 168 yLspryLNkTLPeLaRvsa-dglViF~ 193 (262)
+++. ..+.|-++.|+-. +|.+++.
T Consensus 126 ~~~~--~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 126 NVPD--YMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred cCCC--HHHHHHHHHHHcCcCeEEEEE
Confidence 8753 2467778777654 5566553
No 34
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=90.05 E-value=0.73 Score=43.09 Aligned_cols=132 Identities=16% Similarity=0.221 Sum_probs=75.7
Q ss_pred ceeeeecCCcchhhhhcccc-cccccccccccc--ccchhHHHHhhhhhc-ceeeeeecCCCCCCCCCccEEEecccccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkE-e~tEAWGVEPyd--ied~d~~CKsLvrKG-iVRvADIkfpLPYR~kSFslVivSDaLDy 168 (262)
.+||.||..|=.+...|.+. ...+..||++-+ ++.+..+-. .++ -+...|+. .+|+...+|++||.+++|.|
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e-~lp~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAE-DLPFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHH-hCCCCCCceeEEEEcChhhh
Confidence 47999999885544444443 345677877632 122222211 111 13445654 36777889999999999998
Q ss_pred cChhhhccccccchhh-ccCceEEEecCCcchhhhHHhhhhcCCcc--ccccchhHHHHHHHhccccch
Q 024788 169 LSPKYLNKTLPDLARV-ASDGVLIFAGYPGQQRAKVAELSKFGRPA--KMRSSSWWIRYFVQTSLEENE 234 (262)
Q Consensus 169 LspryLNkTLPeLaRv-sadglViF~G~Pgqqrakvaelskfgrpa--K~rsssWW~r~F~qt~LeEnE 234 (262)
+... .++|-++.|+ ..+|.+++++..... .. ++++-... ...+...|.+.+.++|+++-+
T Consensus 191 ~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~-~~---~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 191 WPDP--QRGIKEAYRVLKIGGKACLIGPVHPT-FW---LSRFFADVWMLFPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred CCCH--HHHHHHHHHhcCCCcEEEEEEecCcc-hh---HHHHhhhhhccCCCHHHHHHHHHHCCCeEEE
Confidence 7643 3678888886 557788787632111 00 11110000 123456677777777777543
No 35
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=89.88 E-value=0.73 Score=37.14 Aligned_cols=99 Identities=21% Similarity=0.288 Sum_probs=58.6
Q ss_pred ceeeeecCCcchhhhhccccc--cccccccccc--cccchhHHHHh--hhhhcceeeeeecCCCCCCCCCccEEEecccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEE--ETEAWGVEPY--DIEDADARCKS--LVHKGIVRVADIKFPLPYRAKSFPLVIVSDAL 166 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe--~tEAWGVEPy--died~d~~CKs--LvrKGiVRvADIkfpLPYR~kSFslVivSDaL 166 (262)
..||.+|..+=.....+++.. ..+..|+|+- -++.+..+++. +-..-.+...|+. .+|+...+|++|+.+..|
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-ALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cCCCCCCCccEEEEeccc
Confidence 579999988744444444433 3677888763 23444444433 1111234445664 355666789999998887
Q ss_pred cccChhhhccccccchh-hccCceEEEec
Q 024788 167 DYLSPKYLNKTLPDLAR-VASDGVLIFAG 194 (262)
Q Consensus 167 DyLspryLNkTLPeLaR-vsadglViF~G 194 (262)
.++.. +...|-++.+ +..+|.+++..
T Consensus 132 ~~~~~--~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 132 RNVPD--IDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccCCC--HHHHHHHHHHhccCCcEEEEEE
Confidence 76642 3334445444 46688888765
No 36
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=89.84 E-value=0.26 Score=35.52 Aligned_cols=100 Identities=24% Similarity=0.263 Sum_probs=62.8
Q ss_pred ceeeeecCCcchhhhhccc-ccccccccccccc--ccchhHHHHh--hhhhcceeeeeecCCCCCCCCCccEEEecc-cc
Q 024788 93 HKVLHVGPDTCSVVSTLLK-EEETEAWGVEPYD--IEDADARCKS--LVHKGIVRVADIKFPLPYRAKSFPLVIVSD-AL 166 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLk-Ee~tEAWGVEPyd--ied~d~~CKs--LvrKGiVRvADIkfpLPYR~kSFslVivSD-aL 166 (262)
.+||.+|-.|=...-.|++ ....+..|||+.+ ++-+..+.+. +-.+=-+..+|+ ...+--...|++|+.+. .+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSGSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCCcc
Confidence 4799999999888888888 4788899998853 3334444421 112223566888 44444555599999999 66
Q ss_pred cccCh-hhhccccccch-hhccCceEEEe
Q 024788 167 DYLSP-KYLNKTLPDLA-RVASDGVLIFA 193 (262)
Q Consensus 167 DyLsp-ryLNkTLPeLa-RvsadglViF~ 193 (262)
+.+-+ ...-+.|-.+. ++..+|+++++
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 64444 23333344444 34556666654
No 37
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=88.97 E-value=1.4 Score=36.44 Aligned_cols=97 Identities=22% Similarity=0.257 Sum_probs=54.3
Q ss_pred cceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhh-hhcc--e--eeeeecCCCCCCCCCccEEEecccc
Q 024788 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLV-HKGI--V--RVADIKFPLPYRAKSFPLVIVSDAL 166 (262)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLv-rKGi--V--RvADIkfpLPYR~kSFslVivSDaL 166 (262)
-.+||.||..|-.... +|.+-..+..|||.. ++.-..++.-. +-|+ | ...|..-++| ..++|++|++.-+.
T Consensus 79 ~~~VLeiG~GsG~~t~-~la~~~~~v~~vd~~--~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~~~~~~ 154 (212)
T PRK00312 79 GDRVLEIGTGSGYQAA-VLAHLVRRVFSVERI--KTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-AYAPFDRILVTAAA 154 (212)
T ss_pred CCEEEEECCCccHHHH-HHHHHhCEEEEEeCC--HHHHHHHHHHHHHCCCCceEEEECCcccCCC-cCCCcCEEEEccCc
Confidence 3589999999877544 333333467888866 33323333222 2243 2 3344432333 13689999998777
Q ss_pred cccChhhhccccccchhhccCceEEEecC-Ccch
Q 024788 167 DYLSPKYLNKTLPDLARVASDGVLIFAGY-PGQQ 199 (262)
Q Consensus 167 DyLspryLNkTLPeLaRvsadglViF~G~-Pgqq 199 (262)
.++..+ + +..+...|++++.=. .++|
T Consensus 155 ~~~~~~-l------~~~L~~gG~lv~~~~~~~~~ 181 (212)
T PRK00312 155 PEIPRA-L------LEQLKEGGILVAPVGGEEQQ 181 (212)
T ss_pred hhhhHH-H------HHhcCCCcEEEEEEcCCCce
Confidence 766332 2 234667887766543 4444
No 38
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=88.44 E-value=1.6 Score=39.76 Aligned_cols=98 Identities=20% Similarity=0.168 Sum_probs=67.1
Q ss_pred ceeeeecCCcchhhhhccccccccccccccccccchhH--HHHhhhhh--cceeeeeecCCCCCCCCCccEEEecccccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADA--RCKSLVHK--GIVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~--~CKsLvrK--GiVRvADIkfpLPYR~kSFslVivSDaLDy 168 (262)
++||-||-.+-.....+++.......||+|....-... ..+.+-.. --+..+|+. .+|+ ..+|++|+...+|.|
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e-~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIE-QLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHH-HCCC-cCCcCEEEECChhhc
Confidence 68999999999888888887666799999887543221 12211111 123334543 4577 889999999999988
Q ss_pred cChhhhccccccchhh-ccCceEEEec
Q 024788 169 LSPKYLNKTLPDLARV-ASDGVLIFAG 194 (262)
Q Consensus 169 LspryLNkTLPeLaRv-sadglViF~G 194 (262)
+. -....|-++.|+ ..+|.+||..
T Consensus 202 ~~--dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 202 RR--SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred cC--CHHHHHHHHHHhcCCCcEEEEEE
Confidence 64 234567788876 5678888764
No 39
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=87.53 E-value=0.82 Score=38.25 Aligned_cols=136 Identities=15% Similarity=0.090 Sum_probs=83.6
Q ss_pred hhhhHHHHHhccccceeeeecCCcchhhhhcccc-cccccccccccc--ccchhHHHHhhh-hhcceeeeee-c-CCCCC
Q 024788 79 RAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADI-K-FPLPY 152 (262)
Q Consensus 79 ~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkE-e~tEAWGVEPyd--ied~d~~CKsLv-rKGiVRvADI-k-fpLPY 152 (262)
...+-..+.+++.-.+||-+|..|-.....|.+. ...+.+|||+.+ ++.+..+++..- ..--+..+|+ . ++..+
T Consensus 28 ~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~ 107 (202)
T PRK00121 28 PAPLDWAELFGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMF 107 (202)
T ss_pred CCCCCHHHHcCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHc
Confidence 4445567888888899999999999888777654 356899999876 555666655421 1112456777 2 33226
Q ss_pred CCCCccEEEecccccccC-hhhh-----ccccccchhh-ccCceEEEec-CCcchhhhHHhhhhcCCccc
Q 024788 153 RAKSFPLVIVSDALDYLS-PKYL-----NKTLPDLARV-ASDGVLIFAG-YPGQQRAKVAELSKFGRPAK 214 (262)
Q Consensus 153 R~kSFslVivSDaLDyLs-pryL-----NkTLPeLaRv-sadglViF~G-~PgqqrakvaelskfgrpaK 214 (262)
...+|++|++.-...+.. +.+. ...|-++.|+ ..+|.++++- .+.+.+.-...+.+.|....
T Consensus 108 ~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 108 PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 678899998643222211 1222 2245555654 4578887765 55555555566666664433
No 40
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=86.15 E-value=1.7 Score=31.35 Aligned_cols=99 Identities=10% Similarity=0.122 Sum_probs=56.2
Q ss_pred cceeeeecCCcchhhhhcccc-cccccccccccc--ccchhHHHHhhh-hhcceeeeeecCCCCCCCCCccEEEeccccc
Q 024788 92 MHKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIVSDALD 167 (262)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkE-e~tEAWGVEPyd--ied~d~~CKsLv-rKGiVRvADIkfpLPYR~kSFslVivSDaLD 167 (262)
-.+||-+|..+=.....|++. .+.+.+|+|+-+ ++-+..+++.+- .+=-+...|+...+++=.++|..|+.....+
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 358999999886665566655 247889999743 233444444431 1111223454433444446899998865432
Q ss_pred ccChhhhccccccchhh-ccCceEEEecC
Q 024788 168 YLSPKYLNKTLPDLARV-ASDGVLIFAGY 195 (262)
Q Consensus 168 yLspryLNkTLPeLaRv-sadglViF~G~ 195 (262)
-+.+.+.++.|+ ..+|.++++.+
T Consensus 100 -----~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 100 -----LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred -----hHHHHHHHHHHHcCCCCEEEEEec
Confidence 223455555554 35677777653
No 41
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=85.34 E-value=1.1 Score=39.30 Aligned_cols=109 Identities=14% Similarity=0.184 Sum_probs=69.4
Q ss_pred chHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhh-cc---eeeeeecC
Q 024788 73 CTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-GI---VRVADIKF 148 (262)
Q Consensus 73 Ct~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrK-Gi---VRvADIkf 148 (262)
-..++..+++.++. .+||.+|=.+.....-|.+. ..+..|||.-. ++-..++...++ |+ +.+.|+.-
T Consensus 108 ~~~~~~~~~~~~~~------~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~--~ai~~~~~~~~~~~l~v~~~~~D~~~ 178 (287)
T PRK12335 108 THSEVLEAVQTVKP------GKALDLGCGQGRNSLYLALL-GFDVTAVDINQ--QSLENLQEIAEKENLNIRTGLYDINS 178 (287)
T ss_pred ccHHHHHHhhccCC------CCEEEeCCCCCHHHHHHHHC-CCEEEEEECCH--HHHHHHHHHHHHcCCceEEEEechhc
Confidence 35566666665431 38999999999877666654 35666665432 222334433332 32 34456643
Q ss_pred CCCCCCCCccEEEecccccccChhhhccccccchhhc-cCceEEE
Q 024788 149 PLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIF 192 (262)
Q Consensus 149 pLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvs-adglViF 192 (262)
+-. ..+|++|+.+.+|-|+++..+..-|-++.|+- .+|++++
T Consensus 179 ~~~--~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 179 ASI--QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred ccc--cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 222 67899999999999999877777777777654 5676444
No 42
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=84.49 E-value=4.6 Score=33.25 Aligned_cols=68 Identities=22% Similarity=0.288 Sum_probs=41.1
Q ss_pred ceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHHhhh-hhcceeeeeecCCCCCCCCCccEEEe
Q 024788 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIV 162 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPyd--ied~d~~CKsLv-rKGiVRvADIkfpLPYR~kSFslViv 162 (262)
.+||-+|..+......+.+.- ..+..|+|... ++-+..+++..- ..=-+..+|+.-++| ..+|++||.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~ 160 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVS 160 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEE
Confidence 489999999999888887652 45777887543 333333333210 011244556643443 578999875
No 43
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=84.31 E-value=5.1 Score=34.76 Aligned_cols=102 Identities=23% Similarity=0.328 Sum_probs=63.4
Q ss_pred hHHHHHhccccceeeeecCCcchhhhhccccc----ccccccccccc--ccchhHHHHhhhhhcceeeeeecCCCCCCCC
Q 024788 82 PILKKAYGDSMHKVLHVGPDTCSVVSTLLKEE----ETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAK 155 (262)
Q Consensus 82 P~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe----~tEAWGVEPyd--ied~d~~CKsLvrKGiVRvADIkfpLPYR~k 155 (262)
-.|.+.....-.+||.+|-.|-.....|.+.- ..+..|+|+.. ++-+..+. ..--+.++|+. .||+...
T Consensus 76 ~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~-~lp~~~~ 150 (272)
T PRK11088 76 NLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSH-RLPFADQ 150 (272)
T ss_pred HHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecc-cCCCcCC
Confidence 33444444444679999999998877765432 12568888753 11121111 11125678875 5788889
Q ss_pred CccEEEecccccccChhhhccccccchhhc-cCceEEEecCCcc
Q 024788 156 SFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIFAGYPGQ 198 (262)
Q Consensus 156 SFslVivSDaLDyLspryLNkTLPeLaRvs-adglViF~G~Pgq 198 (262)
||++|+... +|.. +.|+.|+= .+|.+|+.. |++
T Consensus 151 sfD~I~~~~-----~~~~----~~e~~rvLkpgG~li~~~-p~~ 184 (272)
T PRK11088 151 SLDAIIRIY-----APCK----AEELARVVKPGGIVITVT-PGP 184 (272)
T ss_pred ceeEEEEec-----CCCC----HHHHHhhccCCCEEEEEe-CCC
Confidence 999998654 3543 57899984 467777764 554
No 44
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=83.18 E-value=0.47 Score=34.56 Aligned_cols=89 Identities=28% Similarity=0.365 Sum_probs=57.1
Q ss_pred eeeecCCcchhhhhcccc---c-cccccccccccccchhHHHHhhhh-hc---ceeeeeecCCCCCCCCCccEEEeccc-
Q 024788 95 VLHVGPDTCSVVSTLLKE---E-ETEAWGVEPYDIEDADARCKSLVH-KG---IVRVADIKFPLPYRAKSFPLVIVSDA- 165 (262)
Q Consensus 95 VLHVGPdtC~VVs~LLkE---e-~tEAWGVEPydied~d~~CKsLvr-KG---iVRvADIkfpLPYR~kSFslVivSDa- 165 (262)
||-+|..+-.+...|++- . +...+||+.-. ++=..|+...+ .| -..++|+.. ||+...+|++|+.+..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~--~~l~~~~~~~~~~~~~~~~~~~D~~~-l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISP--EMLELAKKRFSEDGPKVRFVQADARD-LPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-H--HHHHHHHHHSHHTTTTSEEEESCTTC-HHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCH--HHHHHHHHhchhcCCceEEEECCHhH-CcccCCCeeEEEEcCCc
Confidence 456666666666655543 2 36777775421 22244555553 23 457788866 8888889999999766
Q ss_pred ccccChhhhccccccchhhcc
Q 024788 166 LDYLSPKYLNKTLPDLARVAS 186 (262)
Q Consensus 166 LDyLspryLNkTLPeLaRvsa 186 (262)
++|++|.-+.+-|=+++++..
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~ 98 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLR 98 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEE
T ss_pred cCCCCHHHHHHHHHHHHHHhC
Confidence 999999888888777777654
No 45
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=81.80 E-value=3.1 Score=33.69 Aligned_cols=94 Identities=11% Similarity=0.060 Sum_probs=54.1
Q ss_pred ceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHHhhhhhc-ceeeeeecCCCCCCCCCccEEEecccccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPyd--ied~d~~CKsLvrKG-iVRvADIkfpLPYR~kSFslVivSDaLDy 168 (262)
.+||-+|..|-.+...+.+.. ..+..|||+.. ++-+..|++.+--.. -+...|+..++ ..+|++|+......+
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~---~~~~D~v~~~~~~~~ 109 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIEL---PGKADAIFIGGSGGN 109 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhc---CcCCCEEEECCCccC
Confidence 479999999987766666543 35778888753 344444443321111 12334654333 368999987654443
Q ss_pred cChhhhccccccchh-hccCceEEEec
Q 024788 169 LSPKYLNKTLPDLAR-VASDGVLIFAG 194 (262)
Q Consensus 169 LspryLNkTLPeLaR-vsadglViF~G 194 (262)
+ ...+.++.| +..+|.+++..
T Consensus 110 ~-----~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 110 L-----TAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred H-----HHHHHHHHHhcCCCeEEEEEE
Confidence 3 333444433 45678877754
No 46
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=81.78 E-value=3.6 Score=36.31 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=41.2
Q ss_pred eeeecCCCCCCCCCccEEEecccccccChhhhccccccchhhccCceEEEec
Q 024788 143 VADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAG 194 (262)
Q Consensus 143 vADIkfpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvsadglViF~G 194 (262)
++|+-- +|+...+|++|+..+.|-|+++.-..+.+.+++|+-.+|=+++.|
T Consensus 191 ~~dl~~-~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 191 KHNLLA-ESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred eccCCC-CCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 345433 344567899999999999999999999999999988877777777
No 47
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=81.74 E-value=2.4 Score=37.14 Aligned_cols=126 Identities=21% Similarity=0.275 Sum_probs=64.3
Q ss_pred cCCccchHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccc-cccccccccccccchhHHHHhhhhh--c-----
Q 024788 68 EGDFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHK--G----- 139 (262)
Q Consensus 68 eg~~sCt~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPydied~d~~CKsLvrK--G----- 139 (262)
+.+.-+--|.+-.+|.+... .-++||.+|..+..+...+++.. ..+.-+||.-+ ++-..|+....+ |
T Consensus 52 ~~~e~~y~e~l~~~~l~~~~---~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~--~vi~~a~~~~~~~~~~~~~~ 126 (270)
T TIGR00417 52 ERDEFIYHEMIAHVPLFTHP---NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDE--KVIELSKKFLPSLAGSYDDP 126 (270)
T ss_pred CchHHHHHHHhhhhHhhcCC---CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCH--HHHHHHHHHhHhhcccccCC
Confidence 33444555666667766532 23499999999999888888754 22333333310 111333332211 1
Q ss_pred c--eeeeeecCCCCCCCCCccEEEecccccccChh---hhccccccc-hhhccCceEEEec-CCcch
Q 024788 140 I--VRVADIKFPLPYRAKSFPLVIVSDALDYLSPK---YLNKTLPDL-ARVASDGVLIFAG-YPGQQ 199 (262)
Q Consensus 140 i--VRvADIkfpLPYR~kSFslVivSDaLDyLspr---yLNkTLPeL-aRvsadglViF~G-~Pgqq 199 (262)
- +.++|----|....+.|++||+ |.-|...|. |....+-.+ .++..+|++++.. .|-.+
T Consensus 127 ~v~i~~~D~~~~l~~~~~~yDvIi~-D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~ 192 (270)
T TIGR00417 127 RVDLQIDDGFKFLADTENTFDVIIV-DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQ 192 (270)
T ss_pred ceEEEECchHHHHHhCCCCccEEEE-eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccC
Confidence 0 2223421112223578998765 665443332 111112222 4578899988864 45544
No 48
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=81.33 E-value=1.9 Score=33.56 Aligned_cols=113 Identities=23% Similarity=0.353 Sum_probs=73.9
Q ss_pred cccceeeeecCCcchhhhhcccc--ccccccccccccccchhHHHHhhhh-hcc----eeeeeecCCCC--CCCCCccEE
Q 024788 90 DSMHKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDIEDADARCKSLVH-KGI----VRVADIKFPLP--YRAKSFPLV 160 (262)
Q Consensus 90 dsM~kVLHVGPdtC~VVs~LLkE--e~tEAWGVEPydied~d~~CKsLvr-KGi----VRvADIkfpLP--YR~kSFslV 160 (262)
++-.+||.+|-.|-...-.|+++ ...+.+|||.-+ ++=..++...+ .|+ +.++|+.= || +. ..|++|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~-~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGLDNIEFIQGDIED-LPQELE-EKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSS-TTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhcccccccccccceEEeehhc-cccccC-CCeeEE
Confidence 35578999999999999888853 256788887543 23333444332 233 35577766 77 76 999999
Q ss_pred EecccccccChhhhccccccchhhccCceEEEecCCc---chhhhHHhhhh
Q 024788 161 IVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPG---QQRAKVAELSK 208 (262)
Q Consensus 161 ivSDaLDyLspryLNkTLPeLaRvsadglViF~G~Pg---qqrakvaelsk 208 (262)
|...++.++... .+.|-.+.|+-.++-+++...+. +....+.|..+
T Consensus 78 ~~~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~ 126 (152)
T PF13847_consen 78 ISNGVLHHFPDP--EKVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMN 126 (152)
T ss_dssp EEESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHH
T ss_pred EEcCchhhccCH--HHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHH
Confidence 999999777633 46677888887766555555544 22244555544
No 49
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=81.15 E-value=0.88 Score=43.21 Aligned_cols=39 Identities=33% Similarity=0.639 Sum_probs=34.7
Q ss_pred CCCccEEEecccccccChhhhccccccchhhccCc-eEEE
Q 024788 154 AKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDG-VLIF 192 (262)
Q Consensus 154 ~kSFslVivSDaLDyLspryLNkTLPeLaRvsadg-lViF 192 (262)
+.||+.+|.||+.|||+|..+|..+-+|.|+.+.| -|++
T Consensus 293 ~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~ 332 (380)
T PF11899_consen 293 PGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLW 332 (380)
T ss_pred CCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 67899999999999999999999999999998765 4554
No 50
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=80.33 E-value=4.9 Score=33.64 Aligned_cols=93 Identities=22% Similarity=0.220 Sum_probs=57.3
Q ss_pred ceeeeecCCcchhh---hhcccccccccccccccc--ccchhHHHHhhhhhc--ceeeeeecCCCCCCCCCccEEEeccc
Q 024788 93 HKVLHVGPDTCSVV---STLLKEEETEAWGVEPYD--IEDADARCKSLVHKG--IVRVADIKFPLPYRAKSFPLVIVSDA 165 (262)
Q Consensus 93 ~kVLHVGPdtC~VV---s~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKG--iVRvADIkfpLPYR~kSFslVivSDa 165 (262)
.+||.||-.|.... +++++. ..+.+|||..+ ++.+..|.+.+--.+ -+..+|..-.+|- .++|+.|++..+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~-~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~ 151 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIER-RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAA 151 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccC
Confidence 47999999998855 444432 34788888763 233444443321111 2345777655553 468999999988
Q ss_pred ccccChhhhccccccchhhccCceEEEec
Q 024788 166 LDYLSPKYLNKTLPDLARVASDGVLIFAG 194 (262)
Q Consensus 166 LDyLspryLNkTLPeLaRvsadglViF~G 194 (262)
+..+.+..+ ..+..+|.+++.-
T Consensus 152 ~~~~~~~l~-------~~L~~gG~lvi~~ 173 (205)
T PRK13944 152 ASTIPSALV-------RQLKDGGVLVIPV 173 (205)
T ss_pred cchhhHHHH-------HhcCcCcEEEEEE
Confidence 887754322 3466788877744
No 51
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=76.63 E-value=1.7 Score=39.01 Aligned_cols=96 Identities=27% Similarity=0.384 Sum_probs=55.4
Q ss_pred ceeeeecCCcchhhhhccccccccccccc--cccccchhHHHHhhhhhcce--eeeeecCCCCCCCCCccEEEecccccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVE--PYDIEDADARCKSLVHKGIV--RVADIKFPLPYRAKSFPLVIVSDALDY 168 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVE--Pydied~d~~CKsLvrKGiV--RvADIkfpLPYR~kSFslVivSDaLDy 168 (262)
.++|-+|= .+++.+..|-.--.+--.++ |=-|+-+...|..+ .-| .++|+.-. +=+..|+||++|..+-|
T Consensus 45 ~~alEvGC-s~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~--~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 45 RRALEVGC-SIGVLTERLAPRCDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEF--WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp EEEEEE---TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT-----SS-EEEEEEES-GGG
T ss_pred ceeEecCC-CccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCC--CCCCCeeEEEEehHhHc
Confidence 45777773 23444544444333333332 33345555566554 334 55666444 44789999999999999
Q ss_pred cCh-hhhccccccchh-hccCceEEEec
Q 024788 169 LSP-KYLNKTLPDLAR-VASDGVLIFAG 194 (262)
Q Consensus 169 Lsp-ryLNkTLPeLaR-vsadglViF~G 194 (262)
|++ .-|...+-.++. +..||.+||.-
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 997 467777666654 88999999954
No 52
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=75.51 E-value=8.9 Score=32.43 Aligned_cols=93 Identities=16% Similarity=0.200 Sum_probs=56.0
Q ss_pred ceeeeecCCcchhhhhcccc--cccccccccccc--ccchhHHHHhhh-hhcceeeeeecCCCCCCCCCccEEEeccccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIVSDALD 167 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkE--e~tEAWGVEPyd--ied~d~~CKsLv-rKGiVRvADIkfpLPYR~kSFslVivSDaLD 167 (262)
++||.||..|-+....|.+. .+....|||+.+ ++-+..+++.+- .+=-+..+|..-.+| -...|+.|++.-+..
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~-~~~~fD~I~~~~~~~ 156 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE-ENAPYDRIYVTAAGP 156 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-cCCCcCEEEECCCcc
Confidence 58999999998876544432 346889999863 233444444331 111244556543332 236799999987776
Q ss_pred ccChhhhccccccchhhccCceEEEe
Q 024788 168 YLSPKYLNKTLPDLARVASDGVLIFA 193 (262)
Q Consensus 168 yLspryLNkTLPeLaRvsadglViF~ 193 (262)
.+.+.++ ..+..+|.+++.
T Consensus 157 ~~~~~l~-------~~LkpgG~lvi~ 175 (212)
T PRK13942 157 DIPKPLI-------EQLKDGGIMVIP 175 (212)
T ss_pred cchHHHH-------HhhCCCcEEEEE
Confidence 5544332 246778876653
No 53
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=74.73 E-value=9.6 Score=35.73 Aligned_cols=107 Identities=17% Similarity=0.257 Sum_probs=68.1
Q ss_pred hhHHHHHhc-cccceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcceeeeeecCCCCCCCCCc
Q 024788 81 IPILKKAYG-DSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSF 157 (262)
Q Consensus 81 iP~LkkaYG-dsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGiVRvADIkfpLPYR~kSF 157 (262)
+..+.+..+ ..=.+||-||-.+......+.+.-..+.-||+..+ ++-+..+|+.+ .--+...|..- + ..+|
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l--~v~~~~~D~~~-l---~~~f 229 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL--PVEIRLQDYRD-L---NGQF 229 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC--eEEEEECchhh-c---CCCC
Confidence 444433333 34468999999888887777665556777776542 33344444321 00123344321 1 4789
Q ss_pred cEEEecccccccChhhhccccccchhhcc-CceEEEe
Q 024788 158 PLVIVSDALDYLSPKYLNKTLPDLARVAS-DGVLIFA 193 (262)
Q Consensus 158 slVivSDaLDyLspryLNkTLPeLaRvsa-dglViF~ 193 (262)
++|+...+++++.++.+...+.++.|+=. +|.+++.
T Consensus 230 D~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 230 DRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred CEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999999988888888888888754 5666664
No 54
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=72.37 E-value=12 Score=33.27 Aligned_cols=107 Identities=18% Similarity=0.226 Sum_probs=59.9
Q ss_pred ceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccccccC
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 170 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDyLs 170 (262)
.+||-+|-.|-...-.+.+-......||+..+ ++-+..|++.---...+.+..-. .++.-..+|++|+. +.+
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~-~~~~~~~~fDlVva-n~~---- 234 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY-LEQPIEGKADVIVA-NIL---- 234 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc-cccccCCCceEEEE-ecC----
Confidence 68999999996655455554444667776443 34444444321111122221111 22333568999875 443
Q ss_pred hhhhccccccchhh-ccCceEEEecCCcchhhhHHh
Q 024788 171 PKYLNKTLPDLARV-ASDGVLIFAGYPGQQRAKVAE 205 (262)
Q Consensus 171 pryLNkTLPeLaRv-sadglViF~G~Pgqqrakvae 205 (262)
..-+.+.++++.|+ ..+|.+|++|.-..|...+.+
T Consensus 235 ~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~ 270 (288)
T TIGR00406 235 AEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCD 270 (288)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHH
Confidence 22334567777665 567899999975555454444
No 55
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=72.23 E-value=15 Score=31.67 Aligned_cols=100 Identities=23% Similarity=0.305 Sum_probs=54.2
Q ss_pred ccceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccccc
Q 024788 91 SMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (262)
Q Consensus 91 sM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDy 168 (262)
.=.+||-+|-.|-...-.+.+....+..|++.-+ ++-+..|+ -+.|+ . .++. ++.-..+|++|+. +.+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~---~~~~~-~-~~~~--~~~~~~~fD~Vva-ni~-- 188 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENA---ELNGV-E-LNVY--LPQGDLKADVIVA-NIL-- 188 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH---HHcCC-C-ceEE--EccCCCCcCEEEE-cCc--
Confidence 3468999999995444344444444577776532 23333333 23343 1 1122 2222227998864 332
Q ss_pred cChhhhccccccchhh-ccCceEEEecCCcchhhh
Q 024788 169 LSPKYLNKTLPDLARV-ASDGVLIFAGYPGQQRAK 202 (262)
Q Consensus 169 LspryLNkTLPeLaRv-sadglViF~G~Pgqqrak 202 (262)
..-+-+.+|++.|+ ..+|.+|++|.-..+...
T Consensus 189 --~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~ 221 (250)
T PRK00517 189 --ANPLLELAPDLARLLKPGGRLILSGILEEQADE 221 (250)
T ss_pred --HHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHH
Confidence 12233557777665 458999999865444333
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=70.99 E-value=10 Score=30.54 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=43.2
Q ss_pred ceeeeecCCcchhhhhccccccccccccccc--cccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDAL 166 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPy--died~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaL 166 (262)
.+||-+|..+......+.+... +..|||.- -++-+..|++..-..--+..+|+-- .+ ..+|++||.....
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~--~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK-GV--RGKFDVILFNPPY 92 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc-cc--CCcccEEEECCCC
Confidence 5799999999987777776554 78888743 3444666665432222223356422 22 3489999876543
No 57
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=61.90 E-value=5.3 Score=38.21 Aligned_cols=155 Identities=23% Similarity=0.339 Sum_probs=82.5
Q ss_pred HHHHhhhhHHHHHhccccceeeeecCCcch-hhhhcccccc-ccccccccccccchhHHHHhhhhhcceeeeeec----C
Q 024788 75 SEIQRAIPILKKAYGDSMHKVLHVGPDTCS-VVSTLLKEEE-TEAWGVEPYDIEDADARCKSLVHKGIVRVADIK----F 148 (262)
Q Consensus 75 ~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~-VVs~LLkEe~-tEAWGVEPydied~d~~CKsLvrKGiVRvADIk----f 148 (262)
..+.+||--|+.+ |..+ +||-|--..+. |.--|.+..+ .+.==+.-|.-.++..-=+-.-++|+=-+|-.. |
T Consensus 121 ~~i~~ai~~L~~~-g~pv-rIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAf 198 (311)
T PF12147_consen 121 ELIRQAIARLREQ-GRPV-RILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAF 198 (311)
T ss_pred HHHHHHHHHHHhc-CCce-EEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCC
Confidence 3455666666443 3333 46666333333 3333333333 111122233333333333444455654332111 1
Q ss_pred -CCCCCCC--CccEEEecccccccChhh-hccccccchh-hccCceEEEecCCc--chh--hhHHhhhhcCCccccccch
Q 024788 149 -PLPYRAK--SFPLVIVSDALDYLSPKY-LNKTLPDLAR-VASDGVLIFAGYPG--QQR--AKVAELSKFGRPAKMRSSS 219 (262)
Q Consensus 149 -pLPYR~k--SFslVivSDaLDyLspry-LNkTLPeLaR-vsadglViF~G~Pg--qqr--akvaelskfgrpaK~rsss 219 (262)
+--|.+- .-.|+|||-..|+.+-.- ++.+|--|++ +..+|.+|+||+|= |.. |++=-=-+-|.|=-||-+|
T Consensus 199 d~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRs 278 (311)
T PF12147_consen 199 DRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRS 278 (311)
T ss_pred CHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecC
Confidence 0012211 127999999999999855 7889999999 89999999999874 443 2222222467777777665
Q ss_pred h--HHHHHHHhccc
Q 024788 220 W--WIRYFVQTSLE 231 (262)
Q Consensus 220 W--W~r~F~qt~Le 231 (262)
= =-+.+..+|++
T Consensus 279 q~EmD~Lv~~aGF~ 292 (311)
T PF12147_consen 279 QAEMDQLVEAAGFE 292 (311)
T ss_pred HHHHHHHHHHcCCc
Confidence 2 22334444444
No 58
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=61.31 E-value=26 Score=29.57 Aligned_cols=68 Identities=25% Similarity=0.312 Sum_probs=42.1
Q ss_pred ceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHH-hhhhhcceeeeeecCCCCCCCCCccEEEe
Q 024788 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCK-SLVHKGIVRVADIKFPLPYRAKSFPLVIV 162 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPyd--ied~d~~CK-sLvrKGiVRvADIkfpLPYR~kSFslViv 162 (262)
.+||.+|..+-.+...|.+.- ..+..|+|..+ ++-+..|++ .+...--+..+|+--+++ ..+|++||.
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~ 181 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVS 181 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEE
Confidence 479999999887766666553 46777877543 344555555 111122345567644554 578999876
No 59
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=60.96 E-value=37 Score=29.06 Aligned_cols=138 Identities=13% Similarity=0.144 Sum_probs=71.1
Q ss_pred cceeeeecCCcchhhhhcccc--cccccccccccc--ccchhHHHHhhh-hhcceeeeeecCCCCCCCCCccEEEecccc
Q 024788 92 MHKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIVSDAL 166 (262)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkE--e~tEAWGVEPyd--ied~d~~CKsLv-rKGiVRvADIkfpLPYR~kSFslVivSDaL 166 (262)
-.+||-+|..+-.....+.+. ...+..||++-+ ++-+..+...+- ..-.++.+|+. .+|+-..+|++||...++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~-~l~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIE-ALPVADNSVDVIISNCVI 156 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchh-hCCCCCCceeEEEEcCcc
Confidence 459999999884332222222 234677877643 333333322111 11123446764 466666799999877677
Q ss_pred cccChhhhccccccchhh-ccCceEEEecCCcchh---hhHHhh-hhcCCccccccchhHHHHHHHhcccc
Q 024788 167 DYLSPKYLNKTLPDLARV-ASDGVLIFAGYPGQQR---AKVAEL-SKFGRPAKMRSSSWWIRYFVQTSLEE 232 (262)
Q Consensus 167 DyLspryLNkTLPeLaRv-sadglViF~G~Pgqqr---akvael-skfgrpaK~rsssWW~r~F~qt~LeE 232 (262)
.+.. . .-+.+.++.|+ ..+|.+++++.+.... .-..++ ...|......+..=|.+.+.++|+..
T Consensus 157 ~~~~-d-~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 157 NLSP-D-KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cCCC-C-HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCc
Confidence 5542 1 23456666665 4578888877543210 000011 11122223333344677777777654
No 60
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=60.72 E-value=12 Score=29.95 Aligned_cols=118 Identities=23% Similarity=0.196 Sum_probs=65.3
Q ss_pred ceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcceeeeee-cCCCCCCCCCccEEEeccccccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVRVADI-KFPLPYRAKSFPLVIVSDALDYL 169 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGiVRvADI-kfpLPYR~kSFslVivSDaLDyL 169 (262)
..||-+||.+..+...|++. ....+|||.-. ++.+..++... .+=-+..+|+ ++++| ..+|..| +||.-=++
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~-~~v~ii~~D~~~~~~~--~~~~d~v-i~n~Py~~ 89 (169)
T smart00650 15 DTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA-DNLTVIHGDALKFDLP--KLQPYKV-VGNLPYNI 89 (169)
T ss_pred CEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC-CCEEEEECchhcCCcc--ccCCCEE-EECCCccc
Confidence 47999999999999888887 57788888762 22233333210 0111344554 23333 3357654 67766566
Q ss_pred ChhhhccccccchhhccCceEEEecCCcchhhhHHhhhhcCCccccccchhH
Q 024788 170 SPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWW 221 (262)
Q Consensus 170 spryLNkTLPeLaRvsadglViF~G~PgqqrakvaelskfgrpaK~rsssWW 221 (262)
+..-+.+.+-+.. .-.+|+++| |.-..-+-++|.|-+-.-+=|-+|
T Consensus 90 ~~~~i~~~l~~~~-~~~~~~l~~-----q~e~a~rl~~~~~~~~y~~lsv~~ 135 (169)
T smart00650 90 STPILFKLLEEPP-AFRDAVLMV-----QKEVARRLAAKPGSKDYGRLSVLL 135 (169)
T ss_pred HHHHHHHHHhcCC-CcceEEEEE-----EHHHhHHhcCCCCCCcccHHHHHH
Confidence 6666666665432 225566665 222222344556644444444444
No 61
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=60.46 E-value=17 Score=31.01 Aligned_cols=93 Identities=13% Similarity=0.193 Sum_probs=61.7
Q ss_pred cceeeeecCCcchhhhhccccc-cccccccccccccchhHHHHhhhhhcc-eeeeeecCCCCCCCCCccEEEeccccccc
Q 024788 92 MHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHKGI-VRVADIKFPLPYRAKSFPLVIVSDALDYL 169 (262)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPydied~d~~CKsLvrKGi-VRvADIkfpLPYR~kSFslVivSDaLDyL 169 (262)
-.+||-||-.|..+...|.+.- ..+..|||+-+ +.-..++. +++ ++.+|+. .++. ..+|++|+.+.+|.|+
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~--~~~~~a~~---~~~~~~~~d~~-~~~~-~~~fD~v~~~~~l~~~ 102 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSP--EMVAAARE---RGVDARTGDVR-DWKP-KPDTDVVVSNAALQWV 102 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHh---cCCcEEEcChh-hCCC-CCCceEEEEehhhhhC
Confidence 3689999999988766665442 45788998853 11122221 232 4567774 3332 4689999999999998
Q ss_pred Chhhhccccccchhh-ccCceEEEe
Q 024788 170 SPKYLNKTLPDLARV-ASDGVLIFA 193 (262)
Q Consensus 170 spryLNkTLPeLaRv-sadglViF~ 193 (262)
.. ..+.|.++.|+ ..+|.++++
T Consensus 103 ~d--~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 103 PE--HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred CC--HHHHHHHHHHhCCCCcEEEEE
Confidence 53 35677787774 567787776
No 62
>PRK03612 spermidine synthase; Provisional
Probab=60.20 E-value=27 Score=34.07 Aligned_cols=105 Identities=24% Similarity=0.201 Sum_probs=59.9
Q ss_pred ccceeeeecCCcchhhhhcccccc-ccccccccccccchhHHHHh-----------hhh-hcceeeeeecCCCCCCCCCc
Q 024788 91 SMHKVLHVGPDTCSVVSTLLKEEE-TEAWGVEPYDIEDADARCKS-----------LVH-KGIVRVADIKFPLPYRAKSF 157 (262)
Q Consensus 91 sM~kVLHVGPdtC~VVs~LLkEe~-tEAWGVEPydied~d~~CKs-----------Lvr-KGiVRvADIkfpLPYR~kSF 157 (262)
.-++||.+|..+..+...+++... .+...||.-+ ++-..|+. +-. +=-+..+|..--+.-.+++|
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~--~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDP--AMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCH--HHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 457899999999999999998755 6777776411 12222222 100 11245567654455556799
Q ss_pred cEEEecccccccChhhhcc-----cccc-chhhccCceEEEec-CCcch
Q 024788 158 PLVIVSDALDYLSPKYLNK-----TLPD-LARVASDGVLIFAG-YPGQQ 199 (262)
Q Consensus 158 slVivSDaLDyLspryLNk-----TLPe-LaRvsadglViF~G-~Pgqq 199 (262)
++||+ |.-|--.|. .++ -+.. ..++..+|++++.. .|--+
T Consensus 375 DvIi~-D~~~~~~~~-~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~ 421 (521)
T PRK03612 375 DVIIV-DLPDPSNPA-LGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA 421 (521)
T ss_pred CEEEE-eCCCCCCcc-hhccchHHHHHHHHHhcCCCeEEEEecCCcccc
Confidence 99876 544322221 111 1112 24678899988754 34433
No 63
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=55.69 E-value=11 Score=30.39 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=25.6
Q ss_pred CCCCchhhHHHHHHHHhhhhhhccCCCccCcc
Q 024788 29 RSSPLLSVGLVLVGAFLLIGYAFSGSGIFGGD 60 (262)
Q Consensus 29 rsspllsi~lv~vgailli~Y~ysgsg~~~~~ 60 (262)
..+-|++|.+++|-.||||..+-++|++-.++
T Consensus 23 ~pn~lMtILivLVIIiLlImlfqsSS~~~~s~ 54 (85)
T PF10717_consen 23 NPNTLMTILIVLVIIILLIMLFQSSSNGNSSS 54 (85)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 34568889999999999999999999875543
No 64
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=53.01 E-value=15 Score=31.92 Aligned_cols=94 Identities=23% Similarity=0.268 Sum_probs=60.4
Q ss_pred ceeeeecCCcc---hhhhhcccccccccccccccc--ccchhHHHHhhhhhc-ceeeeeecCCCCCCCCCccEEEecccc
Q 024788 93 HKVLHVGPDTC---SVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDAL 166 (262)
Q Consensus 93 ~kVLHVGPdtC---~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKG-iVRvADIkfpLPYR~kSFslVivSDaL 166 (262)
.+||+||..|- .++++|.... ...-+||.++ .+-+..++..+-... .+.++|...++|=.. .|+.||++=+.
T Consensus 74 ~~VLeIGtGsGY~aAlla~lvg~~-g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~a-pfD~I~v~~a~ 151 (209)
T PF01135_consen 74 DRVLEIGTGSGYQAALLAHLVGPV-GRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEA-PFDRIIVTAAV 151 (209)
T ss_dssp -EEEEES-TTSHHHHHHHHHHSTT-EEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG--SEEEEEESSBB
T ss_pred CEEEEecCCCcHHHHHHHHhcCcc-ceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCC-CcCEEEEeecc
Confidence 48999998764 4667776433 3556888766 344666666654444 368889988887655 69999999999
Q ss_pred cccChhhhccccccchhhccCceEEE-ecC
Q 024788 167 DYLSPKYLNKTLPDLARVASDGVLIF-AGY 195 (262)
Q Consensus 167 DyLspryLNkTLPeLaRvsadglViF-~G~ 195 (262)
+-+.+.++. .+..+|.+|+ .+.
T Consensus 152 ~~ip~~l~~-------qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 152 PEIPEALLE-------QLKPGGRLVAPIGQ 174 (209)
T ss_dssp SS--HHHHH-------TEEEEEEEEEEESS
T ss_pred chHHHHHHH-------hcCCCcEEEEEEcc
Confidence 877666554 3456776666 443
No 65
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=50.81 E-value=25 Score=31.00 Aligned_cols=66 Identities=26% Similarity=0.558 Sum_probs=40.5
Q ss_pred HHHHhhhhhcceeeeeecCCCCCCCCCc--cEEEecccccccChhhhccccccchhhccCceEEEecCCcchhhh
Q 024788 130 ARCKSLVHKGIVRVADIKFPLPYRAKSF--PLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAK 202 (262)
Q Consensus 130 ~~CKsLvrKGiVRvADIkfpLPYR~kSF--slVivSDaLDyLspryLNkTLPeLaRvsadglViF~G~Pgqqrak 202 (262)
..=+.|+.+|.+.+.++.| .|=.+| ++|||=+| .-+||..+=.. |.|+..+.=+||+|.|.|+-.+
T Consensus 94 ~~~~~~~~~~~Ie~~~~~~---iRGrt~~~~~iIvDEa-QN~t~~~~k~i---lTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 94 EKLEELIQNGKIEIEPLAF---IRGRTFDNAFIIVDEA-QNLTPEELKMI---LTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp TCHHHHHHTTSEEEEEGGG---GTT--B-SEEEEE-SG-GG--HHHHHHH---HTTB-TT-EEEEEE--------
T ss_pred HhHHHHhhcCeEEEEehhh---hcCccccceEEEEecc-cCCCHHHHHHH---HcccCCCcEEEEecCceeecCC
Confidence 3456788999999999888 577788 67777555 56788877554 7899999999999999999544
No 66
>PRK00811 spermidine synthase; Provisional
Probab=50.67 E-value=37 Score=30.33 Aligned_cols=122 Identities=20% Similarity=0.275 Sum_probs=65.2
Q ss_pred CccchHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccc-cccccccccccccchhHHHHhhhh---hcc-----
Q 024788 70 DFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVH---KGI----- 140 (262)
Q Consensus 70 ~~sCt~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPydied~d~~CKsLvr---KGi----- 140 (262)
|...--|.+..+|.+. -..-++||.+|-.+..+...+|+.. ..+.-+||.-. ++-..|+.... .|.
T Consensus 58 de~~Y~e~l~h~~~~~---~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~--~vv~~a~~~~~~~~~~~~~d~r 132 (283)
T PRK00811 58 DEFIYHEMMTHVPLFA---HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE--RVVEVCRKYLPEIAGGAYDDPR 132 (283)
T ss_pred chhhHHHHhhhHHHhh---CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH--HHHHHHHHHhHHhccccccCCc
Confidence 3334456666677663 2346799999999999999999752 23344443321 12223333221 122
Q ss_pred --eeeeeecCCCCCCCCCccEEEecccccccChh-hh--cccccc-chhhccCceEEEe-cCCc
Q 024788 141 --VRVADIKFPLPYRAKSFPLVIVSDALDYLSPK-YL--NKTLPD-LARVASDGVLIFA-GYPG 197 (262)
Q Consensus 141 --VRvADIkfpLPYR~kSFslVivSDaLDyLspr-yL--NkTLPe-LaRvsadglViF~-G~Pg 197 (262)
+.++|..--++-..+.|++||+ |+-|-..|- -| ..-+-+ ..++..+|++++- +.|-
T Consensus 133 v~v~~~Da~~~l~~~~~~yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~ 195 (283)
T PRK00811 133 VELVIGDGIKFVAETENSFDVIIV-DSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPF 195 (283)
T ss_pred eEEEECchHHHHhhCCCcccEEEE-CCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcc
Confidence 4557754334445678998875 654322221 11 001112 2456788887773 4454
No 67
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=49.67 E-value=23 Score=31.07 Aligned_cols=103 Identities=25% Similarity=0.294 Sum_probs=57.8
Q ss_pred ceeeeecCCcchhhhhcccc--cccccccccccc--ccchhHHHHhhhhhcc-eeeeeecCCCCCCCCCccEEEeccccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLVHKGI-VRVADIKFPLPYRAKSFPLVIVSDALD 167 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkE--e~tEAWGVEPyd--ied~d~~CKsLvrKGi-VRvADIkfpLPYR~kSFslVivSDaLD 167 (262)
.+||-||-.|=.+...|.+. ...+.=||++.+ ++-+..+++..-..-+ .-.+|. .-||++..||+.|.++=.|-
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da-~~lp~~d~sfD~v~~~fglr 127 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA-EDLPFPDNSFDAVTCSFGLR 127 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT-TB--S-TT-EEEEEEES-GG
T ss_pred CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH-HHhcCCCCceeEEEHHhhHH
Confidence 39999998888776667664 345677776543 3334444443322211 222443 35889999999999999998
Q ss_pred ccChhhhccccccchhhccC-ceEEE--ecCCcc
Q 024788 168 YLSPKYLNKTLPDLARVASD-GVLIF--AGYPGQ 198 (262)
Q Consensus 168 yLspryLNkTLPeLaRvsad-glViF--~G~Pgq 198 (262)
.+.. ..+.|-|+.||=.. |.+++ .+.|.+
T Consensus 128 n~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 128 NFPD--RERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp G-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred hhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 8864 57899999999754 44333 345654
No 68
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=47.86 E-value=14 Score=29.86 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=38.7
Q ss_pred eeeeeecCCCCCCCCCccEEEecccccccChhhhccccccchhhccCc-eEE
Q 024788 141 VRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDG-VLI 191 (262)
Q Consensus 141 VRvADIkfpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvsadg-lVi 191 (262)
+.++|+. .||+-..+|++|+.+..|-++. -..+.|-|+.||-..| .++
T Consensus 30 ~~~~d~~-~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 30 WIEGDAI-DLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred EEEechh-hCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEE
Confidence 5668875 7899999999999999998875 3568899999987765 443
No 69
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=46.99 E-value=36 Score=28.49 Aligned_cols=94 Identities=20% Similarity=0.230 Sum_probs=54.4
Q ss_pred ceeeeecCCcchhhhhccccc--ccccccccccc--ccchhHHHHhhhhhc-ceeeeeecCCCCCCCCCccEEEeccccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEE--ETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALD 167 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe--~tEAWGVEPyd--ied~d~~CKsLvrKG-iVRvADIkfpLPYR~kSFslVivSDaLD 167 (262)
.+||-+|..|=.....|.+.. ++..+|||..+ ++.+..+++.+--.. .+..+|..-.++ ....|++|+++.+..
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~-~~~~fD~Ii~~~~~~ 157 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE-PLAPYDRIYVTAAGP 157 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc-ccCCCCEEEEcCCcc
Confidence 489999998877665555432 34589998653 334444544431111 234556543222 235899999887665
Q ss_pred ccChhhhccccccchhhccCceEEEec
Q 024788 168 YLSPKYLNKTLPDLARVASDGVLIFAG 194 (262)
Q Consensus 168 yLspryLNkTLPeLaRvsadglViF~G 194 (262)
.+.+. + +..+..+|.+|+.-
T Consensus 158 ~~~~~-~------~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 158 KIPEA-L------IDQLKEGGILVMPV 177 (215)
T ss_pred cccHH-H------HHhcCcCcEEEEEE
Confidence 54322 1 23467788776643
No 70
>PLN02823 spermine synthase
Probab=46.53 E-value=35 Score=32.02 Aligned_cols=114 Identities=18% Similarity=0.274 Sum_probs=63.5
Q ss_pred CccchHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcc---------
Q 024788 70 DFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI--------- 140 (262)
Q Consensus 70 ~~sCt~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGi--------- 140 (262)
|...--|.+--+|.+. -..-++||++|=..+.+...+|+... ++--++=|.|...-.+.|+=+
T Consensus 85 de~~YhE~l~h~~l~~---~~~pk~VLiiGgG~G~~~re~l~~~~-----~~~v~~VEiD~~vv~lar~~~~~~~~~~~d 156 (336)
T PLN02823 85 DEFVYHESLVHPALLH---HPNPKTVFIMGGGEGSTAREVLRHKT-----VEKVVMCDIDQEVVDFCRKHLTVNREAFCD 156 (336)
T ss_pred hHHHHHHHHHhHHHhh---CCCCCEEEEECCCchHHHHHHHhCCC-----CCeEEEEECCHHHHHHHHHhcccccccccC
Confidence 4445566665566663 23568999999999999998998532 222222333443333333211
Q ss_pred ----eeeeeecCCCCCCCCCccEEEeccccccc---------ChhhhccccccchhhccCceEEEec
Q 024788 141 ----VRVADIKFPLPYRAKSFPLVIVSDALDYL---------SPKYLNKTLPDLARVASDGVLIFAG 194 (262)
Q Consensus 141 ----VRvADIkfpLPYR~kSFslVivSDaLDyL---------spryLNkTLPeLaRvsadglViF~G 194 (262)
|.++|---=|.-..++|++|| .|+-|=. +..++.+.+ ..++..+|++++-.
T Consensus 157 prv~v~~~Da~~~L~~~~~~yDvIi-~D~~dp~~~~~~~~Lyt~eF~~~~~--~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 157 KRLELIINDARAELEKRDEKFDVII-GDLADPVEGGPCYQLYTKSFYERIV--KPKLNPGGIFVTQA 220 (336)
T ss_pred CceEEEEChhHHHHhhCCCCccEEE-ecCCCccccCcchhhccHHHHHHHH--HHhcCCCcEEEEec
Confidence 344443333444456898877 4554421 222332111 25689999988654
No 71
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=44.96 E-value=23 Score=33.38 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=71.0
Q ss_pred ceeeeecCCcchhhhhccccccccccccccc--cccchhHHHHhhhh-hcceeeeeecCC---CCCCCCCccEEEecccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVH-KGIVRVADIKFP---LPYRAKSFPLVIVSDAL 166 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPy--died~d~~CKsLvr-KGiVRvADIkfp---LPYR~kSFslVivSDaL 166 (262)
.+||-+|-.|-.+--.|.+. ..+..|||.. -++++..|.+..-- .--+..+|+.=. +|+..++|++||+
T Consensus 299 ~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~---- 373 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL---- 373 (443)
T ss_pred CEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE----
Confidence 47999998888765555544 3577788754 46777777664321 112445666422 4566678998864
Q ss_pred cccChhh--hccccccchhhccCceEEEecCCcchhhhHHhhhhc
Q 024788 167 DYLSPKY--LNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKF 209 (262)
Q Consensus 167 DyLspry--LNkTLPeLaRvsadglViF~G~Pgqqrakvaelskf 209 (262)
+|-| +.+.+..|.+...+++|.++=+|.-+..-++.|.+-
T Consensus 374 ---dPPr~g~~~~~~~l~~~~~~~ivyvSCnp~tlaRDl~~L~~~ 415 (443)
T PRK13168 374 ---DPPRAGAAEVMQALAKLGPKRIVYVSCNPATLARDAGVLVEA 415 (443)
T ss_pred ---CcCCcChHHHHHHHHhcCCCeEEEEEeChHHhhccHHHHhhC
Confidence 3333 345556677788899999999998876666666543
No 72
>PF08655 DASH_Ask1: DASH complex subunit Ask1; InterPro: IPR013964 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=44.89 E-value=11 Score=28.85 Aligned_cols=14 Identities=29% Similarity=0.852 Sum_probs=11.4
Q ss_pred ccchhHHHHHHHhc
Q 024788 216 RSSSWWIRYFVQTS 229 (262)
Q Consensus 216 rsssWW~r~F~qt~ 229 (262)
-++.||..||.|++
T Consensus 46 ~~~~fwk~fFe~sA 59 (66)
T PF08655_consen 46 DSAKFWKQFFEQSA 59 (66)
T ss_pred HHHhHHHHHHHhhh
Confidence 35689999999875
No 73
>PF08955 BofC_C: BofC C-terminal domain; InterPro: IPR015050 The C-terminal domain of the bacterial protein, bypass of forespore C (BofC), contains a three-stranded beta-sheet and three alpha-helices. The exact function is unknown []. ; PDB: 2BW2_A.
Probab=44.02 E-value=12 Score=29.15 Aligned_cols=16 Identities=38% Similarity=0.964 Sum_probs=13.4
Q ss_pred hccCc-eEEEecCCcch
Q 024788 184 VASDG-VLIFAGYPGQQ 199 (262)
Q Consensus 184 vsadg-lViF~G~Pgqq 199 (262)
+++|| |.||-|.|++.
T Consensus 15 i~~dG~LslF~G~P~~~ 31 (75)
T PF08955_consen 15 ISEDGVLSLFEGPPGEE 31 (75)
T ss_dssp EETTTEEEEBSSS-STT
T ss_pred EcCCCcEEEEecCCCCC
Confidence 57899 89999999987
No 74
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=43.75 E-value=8 Score=37.05 Aligned_cols=41 Identities=17% Similarity=0.429 Sum_probs=28.1
Q ss_pred cCceEEEec-CC---cchhhhHHhhhhcCCccccccchhHHHHHHH
Q 024788 186 SDGVLIFAG-YP---GQQRAKVAELSKFGRPAKMRSSSWWIRYFVQ 227 (262)
Q Consensus 186 adglViF~G-~P---gqqrakvaelskfgrpaK~rsssWW~r~F~q 227 (262)
..|||||+| .| |..+-..-++. -++|+..---.||.+|++.
T Consensus 78 ~nGlv~f~g~~~~~~~~~~~~t~~ie-p~~pi~~~~y~cd~~f~le 122 (403)
T TIGR03676 78 ENGLVLFAGMVPTGGGTEKMETYVIE-PPEPINTYLYRCDSKFYLE 122 (403)
T ss_pred CCeEEEEEeeecCCCCceeEEEEEEe-CCCceEEEEecCCChHHHH
Confidence 389999999 34 33322222233 5888888888899999875
No 75
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=40.38 E-value=26 Score=30.07 Aligned_cols=45 Identities=27% Similarity=0.472 Sum_probs=30.0
Q ss_pred CCccccCCCCc-ccccccccccCCCCchhhHHHHHHHH-----hhhhhhcc
Q 024788 8 STRRLVDTGSF-PFTGALQSKSRSSPLLSVGLVLVGAF-----LLIGYAFS 52 (262)
Q Consensus 8 ~srr~gd~G~~-~~~g~~~sKSrsspllsi~lv~vgai-----lli~Y~ys 52 (262)
-+|..-|.-.. -++|-++.-+-++|.--+|++++|.+ +...|+|-
T Consensus 58 ~~R~l~~tNtt~~tGGELr~~pte~p~evvG~l~LGvV~GG~i~vLcylyl 108 (127)
T PF06040_consen 58 HSRSLSDTNTTTKTGGELRGPPTESPWEVVGYLILGVVAGGLIAVLCYLYL 108 (127)
T ss_pred hcccccccCCccccCceEeCCCCCCCeeeeehhhHHHHhccHHHHHHHHhc
Confidence 34554555444 56788888888899888877776654 45557664
No 76
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=40.11 E-value=1.5e+02 Score=26.18 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=41.3
Q ss_pred ceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHHhhhhhc--ceeeeeecCCCCCCCCCccEEEe
Q 024788 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKG--IVRVADIKFPLPYRAKSFPLVIV 162 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPyd--ied~d~~CKsLvrKG--iVRvADIkfpLPYR~kSFslViv 162 (262)
.+||-+|..|..+.-.|.++- ..+..|||..+ ++-+..|++.+--.. -+..+|+--++ ..+.|++||.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~--~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL--AGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC--cCCCccEEEE
Confidence 589999999988877777654 35777777543 455566655431111 13345654333 3347987654
No 77
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=40.05 E-value=81 Score=25.68 Aligned_cols=108 Identities=15% Similarity=0.224 Sum_probs=63.4
Q ss_pred HHHHhhhhHHHHHhccccceeeeecCCcchhhhhcccc--ccccccccccccccchhHHHHhhhhhccee-eeeecCCC-
Q 024788 75 SEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDIEDADARCKSLVHKGIVR-VADIKFPL- 150 (262)
Q Consensus 75 ~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkE--e~tEAWGVEPydied~d~~CKsLvrKGiVR-vADIkfpL- 150 (262)
.|+-+.++.+++ | .+||-+|-.|..+...+.+. +..+.+|||+-++. + ..++-- .+|+.-+-
T Consensus 21 ~~~~~~~~~i~~--g---~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~---~~~i~~~~~d~~~~~~ 86 (188)
T TIGR00438 21 LQLNQKFKLIKP--G---DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P---IENVDFIRGDFTDEEV 86 (188)
T ss_pred HHHHHHhcccCC--C---CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c---CCCceEEEeeCCChhH
Confidence 345555555543 2 48999999998876666554 35579999988753 1 123322 24664321
Q ss_pred ------CCCCCCccEEEeccc---------ccccCh-hhhccccccchhh-ccCceEEEecCCc
Q 024788 151 ------PYRAKSFPLVIVSDA---------LDYLSP-KYLNKTLPDLARV-ASDGVLIFAGYPG 197 (262)
Q Consensus 151 ------PYR~kSFslVivSDa---------LDyLsp-ryLNkTLPeLaRv-sadglViF~G~Pg 197 (262)
.+...+|++|+. |+ ++++.. .-+.++|-++.|+ ...|.+++..+..
T Consensus 87 ~~~l~~~~~~~~~D~V~~-~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 87 LNKIRERVGDDKVDVVMS-DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred HHHHHHHhCCCCccEEEc-CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 134668998875 33 222111 1135677777766 5677888866544
No 78
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=39.52 E-value=40 Score=28.35 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=47.6
Q ss_pred cEEEecccccccChhhhccccccchhhccCceEEEecCCcchhhhHHhhh--------hcCCccccccchhHHHHHH
Q 024788 158 PLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELS--------KFGRPAKMRSSSWWIRYFV 226 (262)
Q Consensus 158 slVivSDaLDyLspryLNkTLPeLaRvsadglViF~G~Pgqqrakvaels--------kfgrpaK~rsssWW~r~F~ 226 (262)
-.||++|..-. ++-.++++.+-+-+++.+-.+.++|.++-.+.-+..+. ++|++..++.-..+....+
T Consensus 39 gvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~ 114 (211)
T cd03756 39 GVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLK 114 (211)
T ss_pred EEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 36788888765 55556778889999999999999998876544333222 4677776666666655443
No 79
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=38.73 E-value=14 Score=31.46 Aligned_cols=53 Identities=23% Similarity=0.461 Sum_probs=32.6
Q ss_pred eeeecCCCCCCCCCccEEE-ecccccccChhhhccccccchhhccCceEEEecCCcchhhhHH
Q 024788 143 VADIKFPLPYRAKSFPLVI-VSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVA 204 (262)
Q Consensus 143 vADIkfpLPYR~kSFslVi-vSDaLDyLspryLNkTLPeLaRvsadglViF~G~Pgqqrakva 204 (262)
+.|+-+.-.|||++|+=++ =.++++-|.-.--+.+.| .++|+|-||-=|.-.+
T Consensus 2 ~~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~---------~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 2 MMEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMP---------HLLFAGPPGTGKTTAA 55 (319)
T ss_pred CccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCC---------eEEEECCCCCCHHHHH
Confidence 3456667789999999544 344444443221123333 3799999999875544
No 80
>PF05157 T2SE_Nter: Type II secretion system (T2SS), protein E, N-terminal domain; InterPro: IPR007831 This domain is found at the N terminus of members of the general secretory system II protein E. Proteins in this subfamily are typically involved in Type IV pilus biogenesis (e.g. Q9X4G8 from SWISSPROT), though some are involved in other processes; for instance aggregation in Myxococcus xanthus (e.g. Q9RF11 from SWISSPROT) [].; GO: 0005524 ATP binding, 0006810 transport; PDB: 2D27_A 2D28_C.
Probab=38.69 E-value=8.1 Score=27.86 Aligned_cols=65 Identities=18% Similarity=0.281 Sum_probs=33.3
Q ss_pred CCCCCCCCCccEEEecccccccChhhhccccccchhhccCceEEEecCCcchhhhHHhhhhc-CC-ccc
Q 024788 148 FPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKF-GR-PAK 214 (262)
Q Consensus 148 fpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvsadglViF~G~Pgqqrakvaelskf-gr-paK 214 (262)
+.+|| -+--.+.+-.+.++.++.+|+++..==-.+.+.+.++|.+..|-.. ....++... |. +++
T Consensus 20 ~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~~lPl~~~~~~l~va~~dP~~~-~~~~~l~~~~~~~~i~ 86 (109)
T PF05157_consen 20 LGLPF-VDLDELPVDPELLDRLPLEFARRNRVLPLRQDDGTLVVAVADPLDP-EALDELEFLLGKYPIE 86 (109)
T ss_dssp HT--B---GGGS-SS-----G--HHHHHHHTEEEEEECTTCEEEEES-TT-H-HHHHHHHHHH-S--EE
T ss_pred hCCCe-echhhcCCCHHHHHhhHHHHHHHcCEEEEEEECCEEEEEEcCCCCH-HHHHHHHHHcCCCCeE
Confidence 45555 2233444555678889999997654444567788899999999874 666666554 76 666
No 81
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=38.37 E-value=29 Score=32.24 Aligned_cols=107 Identities=16% Similarity=0.065 Sum_probs=70.6
Q ss_pred ceeeeecCCcchhhhhccccccccccccc--cccccchhHHHHhhh-hhcceeeeeecCCCCCCCCCccEEEeccccccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVE--PYDIEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIVSDALDYL 169 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVE--Pydied~d~~CKsLv-rKGiVRvADIkfpLPYR~kSFslVivSDaLDyL 169 (262)
.+||-+|=.|-.+---|.... .+.+||| |--++++..|.+.+= .+--+..+|+.-.++-..++|++||+ |
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~-D----- 307 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLV-N----- 307 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEE-C-----
Confidence 579999888877665555443 6789998 666777877776541 11124556764334433356887665 4
Q ss_pred Chhh--hccccccchhhccCceEEEecCCcchhhhHHhh
Q 024788 170 SPKY--LNKTLPDLARVASDGVLIFAGYPGQQRAKVAEL 206 (262)
Q Consensus 170 spry--LNkTLPeLaRvsadglViF~G~Pgqqrakvael 206 (262)
.||- .++.+..|++...+++|..+-+|..+-.-++.|
T Consensus 308 PPr~G~~~~~l~~l~~~~p~~ivyvsc~p~TlaRDl~~L 346 (374)
T TIGR02085 308 PPRRGIGKELCDYLSQMAPKFILYSSCNAQTMAKDIAEL 346 (374)
T ss_pred CCCCCCcHHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHh
Confidence 5553 235556778888899999999999885555555
No 82
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=38.36 E-value=1.1e+02 Score=25.35 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=68.4
Q ss_pred HHHHhccccceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHHhh-hhhcceeeeeecCCCC--CCCCCc
Q 024788 84 LKKAYGDSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSL-VHKGIVRVADIKFPLP--YRAKSF 157 (262)
Q Consensus 84 LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPyd--ied~d~~CKsL-vrKGiVRvADIkfpLP--YR~kSF 157 (262)
+++.+|+...+||-+|=.+=.+...|.++. +....|||+++ ++-+..+++.. +.+--+...|+..-++ +-..+|
T Consensus 9 ~~~~f~~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 9 FATVFGNKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSL 88 (194)
T ss_pred HHHHhCCCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCce
Confidence 577889888999999988877766666653 67889999975 33344444432 1111123356532111 334478
Q ss_pred cEEEecccccccChh-----hhc-cccccchhh-ccCceEEEecCCcchhh-hHHhhhhcC
Q 024788 158 PLVIVSDALDYLSPK-----YLN-KTLPDLARV-ASDGVLIFAGYPGQQRA-KVAELSKFG 210 (262)
Q Consensus 158 slVivSDaLDyLspr-----yLN-kTLPeLaRv-sadglViF~G~Pgqqra-kvaelskfg 210 (262)
+.|++.=-.-|...+ -+| ..|-+++|+ ..+|.++|+-...+.-. -...+.+.+
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 149 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEND 149 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCC
Confidence 887753111111111 111 124556776 55788877764443322 234444443
No 83
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=35.45 E-value=42 Score=29.38 Aligned_cols=107 Identities=22% Similarity=0.417 Sum_probs=61.6
Q ss_pred HHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccccccccccccccccc-hhHHHHhhhhh-cc---eeeeeec-C
Q 024788 75 SEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIED-ADARCKSLVHK-GI---VRVADIK-F 148 (262)
Q Consensus 75 ~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied-~d~~CKsLvrK-Gi---VRvADIk-f 148 (262)
+||.+|+++++. -|+|-+|=...-=---|- +- -|-|.-.|+.+ +=.+.+.+.++ ++ .+++||. +
T Consensus 20 s~v~~a~~~~~~------g~~LDlgcG~GRNalyLA-~~---G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~ 89 (192)
T PF03848_consen 20 SEVLEAVPLLKP------GKALDLGCGEGRNALYLA-SQ---GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDF 89 (192)
T ss_dssp HHHHHHCTTS-S------SEEEEES-TTSHHHHHHH-HT---T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCB
T ss_pred HHHHHHHhhcCC------CcEEEcCCCCcHHHHHHH-HC---CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhc
Confidence 679999998863 489999855543222222 11 34455566665 33345556543 33 3677873 4
Q ss_pred CCCCCCCCccEEEecccccccChhhhccccccchh-hccCceEEEec
Q 024788 149 PLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLAR-VASDGVLIFAG 194 (262)
Q Consensus 149 pLPYR~kSFslVivSDaLDyLspryLNkTLPeLaR-vsadglViF~G 194 (262)
.+| ..|.+|+.+-++.||.|...-+-+-.+.. +...|+.++..
T Consensus 90 ~~~---~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 90 DFP---EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp S-T---TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccc---CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 443 57998887789999999877555555533 44567766633
No 84
>PF10514 Bcl-2_BAD: Pro-apoptotic Bcl-2 protein, BAD; InterPro: IPR018868 BAD is a Bcl-2 homology domain 3 (BH3)-only pro-apoptotic member of the Bcl-2 protein family that is regulated by phosphorylation in response to survival factors []. Binding of BAD to mitochondria is thought to be exclusively mediated by its BH3 domain. Membrane localisation of BAD mediates membrane translocation of Bcl-XL. The C-terminal part of BAD is sufficient for membrane binding. There are two segments with differing lipid-binding preferences, LBD1 and LBD2, that are responsible for this binding: (i) LBD1 located in the proximity of the BH3 domain (amino acids 122-131) and (ii) LBD2, the putative C-terminal alpha-helix-5 []. Phosphorylation-regulated 14-3-3 protein binding may expose the cholesterol-preferring LBD1 and bury the LBD2, thereby mediating translocation of BAD to raft-like micro-domains []. ; PDB: 2BZW_B 1G5J_B.
Probab=35.02 E-value=4.3 Score=35.98 Aligned_cols=70 Identities=26% Similarity=0.436 Sum_probs=13.4
Q ss_pred CCCCCCCCccEEEecccccccChhhhccccccchhhccCceEEEecCCcchhhhHHhhhhcCCccccccchhHHHHH---
Q 024788 149 PLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWWIRYF--- 225 (262)
Q Consensus 149 pLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvsadglViF~G~PgqqrakvaelskfgrpaK~rsssWW~r~F--- 225 (262)
+.|||..|=|-= -+ =+---|| =-||.|.|.+--..|.|.| |-|- .|..-.||-|++|.+||
T Consensus 90 ~~pFRgRSrSAP---p~-LwaA~rY----GreLRRMSDEF~~~fkGlp---rpkS-----agta~qM~~s~sw~~~~~s~ 153 (167)
T PF10514_consen 90 GSPFRGRSRSAP---PN-LWAAQRY----GRELRRMSDEFDSSFKGLP---RPKS-----AGTATQMRQSRSWTRFLQSW 153 (167)
T ss_dssp ---------------GG-GCHHHHH----HHHHHHHHHHHHCTS------------------------------------
T ss_pred CCCcccccccCC---hH-HHHHHHH----hHHHHHhhHHHHhhhccCC---CCCC-----ccccccccccccHHHHHHHH
Confidence 579998886631 00 0112233 2478899988888888877 4443 37778999999999988
Q ss_pred HHhccccch
Q 024788 226 VQTSLEENE 234 (262)
Q Consensus 226 ~qt~LeEnE 234 (262)
..-++-+-+
T Consensus 154 ~~r~~~~g~ 162 (167)
T PF10514_consen 154 WSRNLGRGG 162 (167)
T ss_dssp ---------
T ss_pred hccccccCC
Confidence 555544433
No 85
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=34.93 E-value=22 Score=29.51 Aligned_cols=39 Identities=26% Similarity=0.540 Sum_probs=32.0
Q ss_pred CCccEEEecccccccChhhhccccccchhhccCceEEEecCC
Q 024788 155 KSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYP 196 (262)
Q Consensus 155 kSFslVivSDaLDyLspryLNkTLPeLaRvsadglViF~G~P 196 (262)
-.+++|+++|+==.++|.||+..+.+|+. ...|+| |++|
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~-p~vglV--t~~~ 68 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLAD-PGVGLV--TGLP 68 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhC-CCCcEE--Eecc
Confidence 67899999999889999999999999987 445555 5554
No 86
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=34.43 E-value=41 Score=30.19 Aligned_cols=104 Identities=15% Similarity=0.089 Sum_probs=66.5
Q ss_pred ceeeeecCCcchhhhhccccccccccccccc--cccchhHHHHhhhhhcc----eeeeeecCCCCCCCCCccEEEecccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVHKGI----VRVADIKFPLPYRAKSFPLVIVSDAL 166 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPy--died~d~~CKsLvrKGi----VRvADIkfpLPYR~kSFslVivSDaL 166 (262)
.+||.+|-.+-.+--.|.+ ...+.+|||.. -++.+..|++.. |+ +..+|+.--++--.+.|++||+ |
T Consensus 175 ~~VLDl~cG~G~~sl~la~-~~~~V~gvD~s~~av~~A~~n~~~~---~l~~v~~~~~D~~~~~~~~~~~~D~Vv~-d-- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCAT-PGMQLTGIEISAEAIACAKQSAAEL---GLTNVQFQALDSTQFATAQGEVPDLVLV-N-- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHc---CCCceEEEEcCHHHHHHhcCCCCeEEEE-C--
Confidence 6899999888776555555 34688999854 356666666443 33 3455653222111346888774 4
Q ss_pred cccChhh--hccccccchhhccCceEEEecCCcchhhhHHhh
Q 024788 167 DYLSPKY--LNKTLPDLARVASDGVLIFAGYPGQQRAKVAEL 206 (262)
Q Consensus 167 DyLspry--LNkTLPeLaRvsadglViF~G~Pgqqrakvael 206 (262)
.||. .++.+.-|.+...+.||..+-+|.-.....+.|
T Consensus 248 ---PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l 286 (315)
T PRK03522 248 ---PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL 286 (315)
T ss_pred ---CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc
Confidence 5654 345556677788899999999998775545444
No 87
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=32.91 E-value=22 Score=29.10 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=31.1
Q ss_pred cceeeeeecCCCCCCCCCccEEEecccccccChhhhccccccchhhccCceEEEec
Q 024788 139 GIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAG 194 (262)
Q Consensus 139 GiVRvADIkfpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvsadglViF~G 194 (262)
-|+.+.|++|.- +...+...++.++.++.+... -+||+||
T Consensus 2 ~i~~isD~H~~~---------------~~~~~~~~~~~~~~~i~~~~~-D~~v~tG 41 (301)
T COG1409 2 RIAHISDLHLGA---------------LGVDSEELLEALLAAIEQLKP-DLLVVTG 41 (301)
T ss_pred eEEEEecCcccc---------------cccchHHHHHHHHHHHhcCCC-CEEEEcc
Confidence 367788888876 677888888888888886666 5777888
No 88
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=32.56 E-value=12 Score=27.78 Aligned_cols=29 Identities=24% Similarity=0.187 Sum_probs=26.0
Q ss_pred hccccccchhhccCceEEEecCCcchhhh
Q 024788 174 LNKTLPDLARVASDGVLIFAGYPGQQRAK 202 (262)
Q Consensus 174 LNkTLPeLaRvsadglViF~G~Pgqqrak 202 (262)
||+..+|-+++-.+|..+|.|.||+...+
T Consensus 37 L~~~~~~~v~l~v~g~~~~~g~lg~~~~~ 65 (77)
T TIGR02480 37 LDKLAGEPLDILVNGRLIARGEVVVVEDK 65 (77)
T ss_pred cCCCCCCcEEEEECCEEEEEEEEEEECCE
Confidence 68889999999999999999999988654
No 89
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=32.29 E-value=1.5e+02 Score=25.25 Aligned_cols=84 Identities=10% Similarity=0.121 Sum_probs=43.1
Q ss_pred CccEEEecccccccChhhhccccccchhhccCceEEEecC-Ccchhh---hHHhhhhcCCccccccchhHHHHHHHhccc
Q 024788 156 SFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGY-PGQQRA---KVAELSKFGRPAKMRSSSWWIRYFVQTSLE 231 (262)
Q Consensus 156 SFslVivSDaLDyLspryLNkTLPeLaRvsadglViF~G~-Pgqqra---kvaelskfgrpaK~rsssWW~r~F~qt~Le 231 (262)
...+||+-+ .|+|++.-.|.-+.-+...+....+||++. +...-. +-..+-.|..+-.---..|..+++-+.|++
T Consensus 102 ~~~vviiDe-~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~ 180 (319)
T PRK00440 102 PFKIIFLDE-ADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIE 180 (319)
T ss_pred CceEEEEeC-cccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 345676666 699988655544433444556677888773 221100 011122222222222246666777677776
Q ss_pred cchHHHHHH
Q 024788 232 ENEPAVKKF 240 (262)
Q Consensus 232 EnE~a~KkF 240 (262)
=.+++...+
T Consensus 181 i~~~al~~l 189 (319)
T PRK00440 181 ITDDALEAI 189 (319)
T ss_pred CCHHHHHHH
Confidence 555555544
No 90
>PRK14968 putative methyltransferase; Provisional
Probab=31.02 E-value=2.4e+02 Score=21.98 Aligned_cols=69 Identities=23% Similarity=0.307 Sum_probs=39.9
Q ss_pred ceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhc---ceeeeeecCCCCCCCCCccEEEecc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKG---IVRVADIKFPLPYRAKSFPLVIVSD 164 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKG---iVRvADIkfpLPYR~kSFslVivSD 164 (262)
.+||-+|..+=.....|++. .....|+|.-+ ++-+..+++..--+. .+...|..= +.+.++|++||...
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~d~vi~n~ 98 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE--PFRGDKFDVILFNP 98 (188)
T ss_pred CEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc--cccccCceEEEECC
Confidence 47999998877776666665 67777877542 233333332211111 133455433 44567899998643
No 91
>COG2126 RPL37A Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]
Probab=31.01 E-value=21 Score=27.35 Aligned_cols=14 Identities=57% Similarity=1.056 Sum_probs=12.3
Q ss_pred hcCCccccccchhH
Q 024788 208 KFGRPAKMRSSSWW 221 (262)
Q Consensus 208 kfgrpaK~rsssWW 221 (262)
=|||.+|||+-+|=
T Consensus 38 Gfgrs~r~R~y~W~ 51 (61)
T COG2126 38 GFGRSARMRSYNWQ 51 (61)
T ss_pred CCCCccccccchhh
Confidence 38999999999993
No 92
>PRK14967 putative methyltransferase; Provisional
Probab=30.73 E-value=53 Score=27.62 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=40.8
Q ss_pred ceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEe
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIV 162 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslViv 162 (262)
.+||-+|..+-.+...+.+....+..|||..+ ++-+..|++..=-+-.+..+|+.-++ +..+|++||.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~--~~~~fD~Vi~ 107 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAV--EFRPFDVVVS 107 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhc--cCCCeeEEEE
Confidence 48999999997765556555444677777654 44344444332111234456765444 3568999885
No 93
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=30.57 E-value=66 Score=26.92 Aligned_cols=51 Identities=33% Similarity=0.448 Sum_probs=38.3
Q ss_pred CCCCccEEEecccccccChhhhccccccchhhccCceEEEecCCc--chhhhHHhhhhcC
Q 024788 153 RAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPG--QQRAKVAELSKFG 210 (262)
Q Consensus 153 R~kSFslVivSDaLDyLspryLNkTLPeLaRvsadglViF~G~Pg--qqrakvaelskfg 210 (262)
|-.|+.++=.+|+ .|.+|...+|-..|.. |+||+|..- +|+.++..+.++-
T Consensus 3 R~~~a~V~r~aD~----~p~~L~~~~~adGrfr---I~vFagd~~~~~~~~~l~~~~~~L 55 (167)
T cd02979 3 RFPSAPVVRQADA----LPVHLGHRLPADGRFR---IYVFAGDIAPAQQKSRLTQLCDAL 55 (167)
T ss_pred cCCCceEEEecCC----CCHhHhhhccCCCCEE---EEEEcCCCCchhHHHHHHHHHHHH
Confidence 4566777777776 4788888888766654 999999654 8888888887765
No 94
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=30.22 E-value=37 Score=27.35 Aligned_cols=51 Identities=24% Similarity=0.267 Sum_probs=35.4
Q ss_pred hccCCCccCccccccccccCCccchHHHHhhhhHHHHHhccccceeeeecC
Q 024788 50 AFSGSGIFGGDKAAVSRIEGDFSCTSEIQRAIPILKKAYGDSMHKVLHVGP 100 (262)
Q Consensus 50 ~ysgsg~~~~~~~~vs~~eg~~sCt~eV~~aiP~LkkaYGdsM~kVLHVGP 100 (262)
=|+||++|+.+-..--.-+-.......+..||..|++.+.-.-.+|.-+|=
T Consensus 21 ~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~ 71 (213)
T PF00326_consen 21 NYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGH 71 (213)
T ss_dssp E-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred cCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcc
Confidence 478999888643322222334467788999999999999777778777773
No 95
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=29.78 E-value=39 Score=31.42 Aligned_cols=110 Identities=13% Similarity=0.157 Sum_probs=67.0
Q ss_pred ceeeeecCCcchhhhhccccccccccccccc--cccchhHHHHhhhhhc-ceeeeeecCC---CCCCCCCccEEEecccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVHKG-IVRVADIKFP---LPYRAKSFPLVIVSDAL 166 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPy--died~d~~CKsLvrKG-iVRvADIkfp---LPYR~kSFslVivSDaL 166 (262)
..||-+|-.+..+--.|.+. ..+..|||.- -++++..|++..--+. -+..+|+.-- ++....+|++||+
T Consensus 294 ~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~---- 368 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL---- 368 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE----
Confidence 36888877776665554443 3578999854 4677777776431111 2445665322 2344568998884
Q ss_pred cccChhhh---ccccccchhhccCceEEEecCCcchhhhHHhhhhcC
Q 024788 167 DYLSPKYL---NKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFG 210 (262)
Q Consensus 167 DyLspryL---NkTLPeLaRvsadglViF~G~Pgqqrakvaelskfg 210 (262)
+|-+- ...|..|.++..+++|.++-+|.-..--.+.|.+-|
T Consensus 369 ---dPPr~G~~~~~l~~l~~l~~~~ivyvsc~p~tlard~~~l~~~g 412 (431)
T TIGR00479 369 ---DPPRKGCAAEVLRTIIELKPERIVYVSCNPATLARDLEFLCKEG 412 (431)
T ss_pred ---CcCCCCCCHHHHHHHHhcCCCEEEEEcCCHHHHHHHHHHHHHCC
Confidence 33332 344556777888999988889987644455555443
No 96
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=28.85 E-value=62 Score=27.96 Aligned_cols=95 Identities=14% Similarity=0.093 Sum_probs=52.6
Q ss_pred ceeeeecCCcchhhhhccccccccccccccc--cccchhHHHHhh-hhhcceeeeeecCCCCCCCCCccEEEeccccccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSL-VHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYL 169 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPy--died~d~~CKsL-vrKGiVRvADIkfpLPYR~kSFslVivSDaLDyL 169 (262)
.+||-+|-.|.++--.+|.....++=|||-. -++.+..|.+.+ +.+--+...|+.-.|+....+|++|+ +
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~-------~ 127 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVF-------V 127 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEE-------E
Confidence 4799998887766544555555667777642 233344444333 11122445676544554445688775 3
Q ss_pred Chhh----hccccccchh---hccCceEEEec
Q 024788 170 SPKY----LNKTLPDLAR---VASDGVLIFAG 194 (262)
Q Consensus 170 spry----LNkTLPeLaR---vsadglViF~G 194 (262)
+|-| .++++.-|+. +..|++|+..-
T Consensus 128 DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 128 DPPFRKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred CCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 4444 3334444444 46788888763
No 97
>PF14035 YlzJ: YlzJ-like protein
Probab=27.49 E-value=23 Score=26.42 Aligned_cols=14 Identities=36% Similarity=0.935 Sum_probs=12.6
Q ss_pred EEecccccccChhh
Q 024788 160 VIVSDALDYLSPKY 173 (262)
Q Consensus 160 VivSDaLDyLspry 173 (262)
+|-+|--|||.|+|
T Consensus 46 llStnP~dYLnp~~ 59 (66)
T PF14035_consen 46 LLSTNPQDYLNPDY 59 (66)
T ss_pred EecCChHHHcCccC
Confidence 57799999999998
No 98
>TIGR01397 fliM_switch flagellar motor switch protein FliM. Members of this family are the flagellar motor switch protein FliM. The family excludes FliM homologs that lack an N-terminal region critical to interaction with phosphorylated CheY. One set lacking this N-terminal region is found in Rhizobium meliloti, in which the direction of flagellar rotation is not reversible (i.e. the FliM homolog does not act to reverse the motor direction), and in related species. Another is found in Buchnera, an obligate intracellular endosymbiont with genes for many of the components of the flagellar apparatus, but not, apparently, for flagellin iself.
Probab=27.32 E-value=17 Score=32.58 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=26.9
Q ss_pred hccccccchhhccCceEEEecCCcchhhhH
Q 024788 174 LNKTLPDLARVASDGVLIFAGYPGQQRAKV 203 (262)
Q Consensus 174 LNkTLPeLaRvsadglViF~G~Pgqqrakv 203 (262)
||++.++-+.|..+|.-+|.|.||+.+.+.
T Consensus 282 L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~ 311 (320)
T TIGR01397 282 LNTDMPEEVSLRVGGRPKFRAQPGVRGGKL 311 (320)
T ss_pred eCCCCCCcEEEEECCEEEEEEEEEEECCEE
Confidence 688999999999999999999999987653
No 99
>PRK06033 hypothetical protein; Validated
Probab=26.64 E-value=17 Score=28.03 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=26.1
Q ss_pred hccccccchhhccCceEEEecCCcchhhh
Q 024788 174 LNKTLPDLARVASDGVLIFAGYPGQQRAK 202 (262)
Q Consensus 174 LNkTLPeLaRvsadglViF~G~Pgqqrak 202 (262)
||++.+|-..+-.+|..+|.|.||..+.+
T Consensus 36 L~~~~~~~v~v~V~~~~~f~g~~G~~~~~ 64 (83)
T PRK06033 36 LDATEADEVWILANNHPIARGEVLIDRNR 64 (83)
T ss_pred eCCCCCCcEEEEECCEEEEEEEEEEECCE
Confidence 68888899999999999999999987654
No 100
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=26.63 E-value=51 Score=31.76 Aligned_cols=34 Identities=32% Similarity=0.453 Sum_probs=20.9
Q ss_pred ccCCCCcccccccccccCCCCchhhHHHHHHHHhh
Q 024788 12 LVDTGSFPFTGALQSKSRSSPLLSVGLVLVGAFLL 46 (262)
Q Consensus 12 ~gd~G~~~~~g~~~sKSrsspllsi~lv~vgaill 46 (262)
+|+.|.+. ..+-.|||-|+.|++|.|++-+.+|+
T Consensus 257 LGe~Gl~~-~SSnss~S~s~~l~piil~IG~vl~i 290 (305)
T PF04639_consen 257 LGENGLIT-KSSNSSKSVSDSLLPIILIIGGVLLI 290 (305)
T ss_pred cCcccccc-cccCccchhhhhhhHHHHHHHHHHHH
Confidence 45666433 22345688888899987766554443
No 101
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=26.60 E-value=77 Score=29.35 Aligned_cols=111 Identities=17% Similarity=0.251 Sum_probs=75.4
Q ss_pred ceeeee--cCCcchhhhhccccccccccccccccccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccccccC
Q 024788 93 HKVLHV--GPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 170 (262)
Q Consensus 93 ~kVLHV--GPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDyLs 170 (262)
++||-. |++--.+.+.+.--.+.-+=++.||-+...+-|-++=.-.=.+-.+|+-+ -+.-|.+|+++|.. -.
T Consensus 81 krVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g----~~~~~Dl~LagDlf--y~ 154 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG----SPPAFDLLLAGDLF--YN 154 (218)
T ss_pred ceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC----CCcceeEEEeecee--cC
Confidence 466655 55556666666666666666788988888887777644111122234444 56789999999974 34
Q ss_pred hhhhccccccchhhccCceEEEecCCcchhhhHHhhhhc
Q 024788 171 PKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKF 209 (262)
Q Consensus 171 pryLNkTLPeLaRvsadglViF~G~Pgqqrakvaelskf 209 (262)
+-.=-|.+|-+.|..+-|..++.|-||-..--...|..|
T Consensus 155 ~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~lpk~~l~~~ 193 (218)
T COG3897 155 HTEADRLIPWKDRLAEAGAAVLVGDPGRAYLPKKRLEFL 193 (218)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEeCCCCCCCchhhhhhh
Confidence 444556788899999999999999999765444555544
No 102
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=26.09 E-value=1.1e+02 Score=31.16 Aligned_cols=121 Identities=24% Similarity=0.419 Sum_probs=88.1
Q ss_pred HHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcceeeeee--cCCCCC
Q 024788 75 SEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADI--KFPLPY 152 (262)
Q Consensus 75 ~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGiVRvADI--kfpLPY 152 (262)
..+.+.||.. .-|...+-+|-||=.+=+.-+.|++. +.-+-.+.|+|-. .+.+.=-.++|+.-+--+ ..-|||
T Consensus 103 d~i~~~~~~~--~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~--~~qvqfaleRGvpa~~~~~~s~rLPf 177 (506)
T PF03141_consen 103 DQIAEMIPLI--KWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEH--EAQVQFALERGVPAMIGVLGSQRLPF 177 (506)
T ss_pred HHHHHHhhcc--ccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCC--chhhhhhhhcCcchhhhhhccccccC
Confidence 3566677765 67889999999998888888888854 4446677787544 344555567887655333 567888
Q ss_pred CCCCccEEEecccccccChhhhccccccchhhc-cCceEEEecCCcchhh
Q 024788 153 RAKSFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIFAGYPGQQRA 201 (262)
Q Consensus 153 R~kSFslVivSDaLDyLspryLNkTLPeLaRvs-adglViF~G~Pgqqra 201 (262)
=+.+|.+|=.|..+.--.+.- -.-|-|+-||= .-|..+.+|.|-++|.
T Consensus 178 p~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~~r~ 226 (506)
T PF03141_consen 178 PSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVYQRT 226 (506)
T ss_pred Cccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCcccccc
Confidence 899999999988775444432 35788888874 6799999999988543
No 103
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=25.96 E-value=24 Score=27.17 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=13.4
Q ss_pred cccccccccccchhHHHHhhh
Q 024788 116 EAWGVEPYDIEDADARCKSLV 136 (262)
Q Consensus 116 EAWGVEPydied~d~~CKsLv 136 (262)
=.|||.|+-+++.+.+...++
T Consensus 57 l~~GV~p~~~~~~~~~~~~~~ 77 (117)
T PF02887_consen 57 LYWGVYPVLIEEFDKDTEELI 77 (117)
T ss_dssp GSTTEEEEECSSHSHSHHHHH
T ss_pred cccceEEEEeccccccHHHHH
Confidence 469999976666553333333
No 104
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=25.92 E-value=1.2e+02 Score=23.04 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=28.0
Q ss_pred EEEecccccccChhhhcc---------ccccchhhccCceEEEecCCcch
Q 024788 159 LVIVSDALDYLSPKYLNK---------TLPDLARVASDGVLIFAGYPGQQ 199 (262)
Q Consensus 159 lVivSDaLDyLspryLNk---------TLPeLaRvsadglViF~G~Pgqq 199 (262)
+.+++|.-.-+..+|=-. .+|...=|+.||.|+..+.+.+.
T Consensus 87 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 87 FPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp SEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 345666544444444333 79999999999999998855544
No 105
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=25.73 E-value=1.7e+02 Score=24.97 Aligned_cols=108 Identities=19% Similarity=0.102 Sum_probs=58.4
Q ss_pred ceeeeecCCcchhhhhccc-ccccccccccccc--ccchhHHHHhhhhh-cceeeeeecCCCCCCCCCccEEEecccccc
Q 024788 93 HKVLHVGPDTCSVVSTLLK-EEETEAWGVEPYD--IEDADARCKSLVHK-GIVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLk-Ee~tEAWGVEPyd--ied~d~~CKsLvrK-GiVRvADIkfpLPYR~kSFslVivSDaLDy 168 (262)
.+||.+|-.|=..---+.+ -...+..|||+-+ ++-+..+++..--. --++.+|+.- ++. ..+|++|++. +...
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~-~~~-~~~fDlV~~~-~~~~ 123 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEE-FGQ-EEKFDVVTSR-AVAS 123 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhh-CCC-CCCccEEEEc-cccC
Confidence 5799999876543222222 3456788887754 23455554443211 1245566643 333 6799999964 3211
Q ss_pred cChhhhccccccchh-hccCceEEEecCCcchhhhHHhhhhc
Q 024788 169 LSPKYLNKTLPDLAR-VASDGVLIFAGYPGQQRAKVAELSKF 209 (262)
Q Consensus 169 LspryLNkTLPeLaR-vsadglViF~G~Pgqqrakvaelskf 209 (262)
+-..+-++.| +..+|.+++.=.+.+. +.+.+++++
T Consensus 124 -----~~~~l~~~~~~LkpGG~lv~~~~~~~~-~~l~~~~~~ 159 (187)
T PRK00107 124 -----LSDLVELCLPLLKPGGRFLALKGRDPE-EEIAELPKA 159 (187)
T ss_pred -----HHHHHHHHHHhcCCCeEEEEEeCCChH-HHHHHHHHh
Confidence 1233334443 4567776666444444 556666664
No 106
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=24.75 E-value=35 Score=30.03 Aligned_cols=41 Identities=22% Similarity=0.498 Sum_probs=26.7
Q ss_pred eeee--cCCcchhhhhcccc-cccccc----cccccc-----ccchhHHHHhh
Q 024788 95 VLHV--GPDTCSVVSTLLKE-EETEAW----GVEPYD-----IEDADARCKSL 135 (262)
Q Consensus 95 VLHV--GPdtC~VVs~LLkE-e~tEAW----GVEPyd-----ied~d~~CKsL 135 (262)
+||+ ||+++.++..|..+ -+...+ -|.|++ +++...-|+.+
T Consensus 2 LLH~CCaPCs~~~~~~L~~~g~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~ 54 (176)
T PF02677_consen 2 LLHICCAPCSTYPLERLREEGFDVTGYFYNPNIHPYEEYERRLEELKRFAEKL 54 (176)
T ss_pred eeeecCccccHHHHHHHHHCCCCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHc
Confidence 6898 99999999999877 222222 355654 45555555555
No 107
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=24.71 E-value=85 Score=31.88 Aligned_cols=120 Identities=18% Similarity=0.104 Sum_probs=66.5
Q ss_pred ceeeeecCCcchhhhhccccccccccccccc--cccchhHHHHhh-h--hhcceeeeeecCCCCCCCCCccEEEec----
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSL-V--HKGIVRVADIKFPLPYRAKSFPLVIVS---- 163 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPy--died~d~~CKsL-v--rKGiVRvADIkfpLPYR~kSFslVivS---- 163 (262)
++||.+|=.||..--.+++.+..+.-+||-. -++-+..|.+.. + .+--+..+|+-=.|.-..++|++||+-
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f 619 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTF 619 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCC
Confidence 6899999999999888887665567777633 344455554322 1 011233467522222114689998751
Q ss_pred -------ccccccC-hhhhccccccchhhccCceEEEecCCcchhhhHHhhhhcCCccc
Q 024788 164 -------DALDYLS-PKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAK 214 (262)
Q Consensus 164 -------DaLDyLs-pryLNkTLPeLaRvsadglViF~G~PgqqrakvaelskfgrpaK 214 (262)
+..+... -+-||+.. +..+..+|+++|...+.+.....+.+.+.|+.++
T Consensus 620 ~~~~~~~~~~~~~~~y~~l~~~a--~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~ 676 (702)
T PRK11783 620 SNSKRMEDSFDVQRDHVALIKDA--KRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAE 676 (702)
T ss_pred CCCCccchhhhHHHHHHHHHHHH--HHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEE
Confidence 1000000 00122222 2236679999998888776555555555555443
No 108
>PRK04266 fibrillarin; Provisional
Probab=24.66 E-value=1.8e+02 Score=25.47 Aligned_cols=95 Identities=21% Similarity=0.265 Sum_probs=53.8
Q ss_pred ceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHHhhhhhc-ceeeeeecCCCCCC--CCCccEEEecccc
Q 024788 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYR--AKSFPLVIVSDAL 166 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPyd--ied~d~~CKsLvrKG-iVRvADIkfpLPYR--~kSFslVivSDaL 166 (262)
.+||-+|-.|=.+...|.+.- ....+|||..+ ++....+|+.. .+ ....+|+.-|.+|. ..+|+.|+ +|.-
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D~i~-~d~~ 150 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVDVIY-QDVA 150 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCCEEE-ECCC
Confidence 479999887655444443321 45788888765 56666666653 23 23356876543332 24588877 4432
Q ss_pred cccChhhhccccccchhh-ccCceEEEe
Q 024788 167 DYLSPKYLNKTLPDLARV-ASDGVLIFA 193 (262)
Q Consensus 167 DyLspryLNkTLPeLaRv-sadglViF~ 193 (262)
.|.-....|-++.|+ ...|.++++
T Consensus 151 ---~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 151 ---QPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred ---ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 232223346666664 556666664
No 109
>PRK06922 hypothetical protein; Provisional
Probab=24.63 E-value=76 Score=33.33 Aligned_cols=99 Identities=17% Similarity=0.287 Sum_probs=61.3
Q ss_pred ceeeeecCCcchhhhhccc-ccccccccccccc--ccchhHHHHhhhhhc-ceeeeeecCCCC--CCCCCccEEEecccc
Q 024788 93 HKVLHVGPDTCSVVSTLLK-EEETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLP--YRAKSFPLVIVSDAL 166 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLk-Ee~tEAWGVEPyd--ied~d~~CKsLvrKG-iVRvADIkfpLP--YR~kSFslVivSDaL 166 (262)
.+||-||-.|=.+...|.+ -.+.+..|++.-. ++.+..+++..- .. -+..+|+. .|| +.+.+|++|+.+-++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~-dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAI-NLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchH-hCccccCCCCEEEEEEchHH
Confidence 4899999888544333332 2356888887765 455544433210 11 12346753 345 778899999988766
Q ss_pred ccc-----------Chhhhccccccchhhcc-CceEEEe
Q 024788 167 DYL-----------SPKYLNKTLPDLARVAS-DGVLIFA 193 (262)
Q Consensus 167 DyL-----------spryLNkTLPeLaRvsa-dglViF~ 193 (262)
..+ .+..+.+.|-++.|+-. .|.+|+.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 543 24677788888888755 5566664
No 110
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=24.37 E-value=92 Score=25.18 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=47.3
Q ss_pred hhhhccccccccccccccccccchhHHHHhhhhhcceeeeeecCCCCCCCCCccEEEecccccccChhhhccccccchhh
Q 024788 105 VVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARV 184 (262)
Q Consensus 105 VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRv 184 (262)
++++.+.+++-.+.+.+-|..+--...+.+ -||++|=.-...++...++++|+.|.. .+++. +..+
T Consensus 11 ila~a~~~~G~~v~~~~~ygs~~rGG~~~~-----~vris~~~~~~~~~~~~~Dilv~l~~~------~~~~~---~~~l 76 (173)
T PF01558_consen 11 ILARAAAREGYYVQSTPEYGSEIRGGPVVS-----HVRISDEPIIPSPPVGEADILVALDPE------ALERH---LKGL 76 (173)
T ss_dssp HHHHHHHHTTSEEEEEEEEESSSSSSCEEE-----EEEEESS--SSSS-TSSESEEEESSHH------HHHHC---GTTC
T ss_pred HHHHHHHHcCCCEEEEeCCChhhcCCeEEE-----EEEEecCcCccCcccCCCCEEEEcCHH------HHHHH---hcCc
Confidence 455566677777777777776632222221 367888213445555799999987653 33333 3347
Q ss_pred ccCceEEEecCC
Q 024788 185 ASDGVLIFAGYP 196 (262)
Q Consensus 185 sadglViF~G~P 196 (262)
..+|+||+-...
T Consensus 77 ~~~g~vi~ns~~ 88 (173)
T PF01558_consen 77 KPGGVVIINSSL 88 (173)
T ss_dssp ETTEEEEEETTT
T ss_pred CcCeEEEEECCC
Confidence 788999987743
No 111
>PF03815 LCCL: LCCL domain; InterPro: IPR004043 The LCCL domain has been named after the best characterised proteins that were found to contain it, namely Limulus factor C, Coch-5b2 and Lgl1. It is an about 100 amino acids domain whose C-terminal part contains a highly conserved histidine in a conserved motif YxxxSxxCxAAVHxGVI. The LCCL module is thought to be an autonomously folding domain that has been used for the construction of various modular proteins through exon-shuffling. It has been found in various metazoan proteins in association with complement B-type domains, C-type lectin domains, von Willebrand type A domains, CUB domains, discoidin lectin domains or CAP domains. It has been proposed that the LCCL domain could be involved in lipopolysaccharide (LPS) binding [, ]. Secondary structure prediction suggests that the LCCL domain contains six beta strands and two alpha helices []. Some proteins known to contain a LCCL domain include Limulus factor C, a LPS endotoxin-sensitive trypsin type serine protease which serves to protect the organism from bacterial infection; vertebrate cochlear protein cochlin or coch-5b2 (Cochlin is probably a secreted protein, mutations affecting the LCCL domain of coch-5b2 cause the deafness disorder DFNA9 in humans); and mammalian late gestation lung protein Lgl1, contains two tandem copies of the LCCL domain [].; PDB: 1JBI_A.
Probab=24.32 E-value=37 Score=26.52 Aligned_cols=41 Identities=22% Similarity=0.542 Sum_probs=26.6
Q ss_pred cceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcce
Q 024788 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIV 141 (262)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGiV 141 (262)
..+++=.=|.-|. +++...||-.+|. +-++-|++-|+-|++
T Consensus 18 ~~~~~v~CP~~C~-------~~~~~v~Gt~~Y~--~~SsIC~AAIHaGvi 58 (96)
T PF03815_consen 18 GTSFTVRCPAGCS-------DSKGTVYGTDVYS--ADSSICKAAIHAGVI 58 (96)
T ss_dssp SSEEEEEE-S----------SSS--EESSSSEE--TTSBHHHHHHHHTSS
T ss_pred CceEEEECCCCCC-------CCCCeEECCcccc--CCCHHHHHHHhCCEE
Confidence 3444445688882 3448999999997 567899999999987
No 112
>COG0312 TldD Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]
Probab=24.32 E-value=24 Score=33.22 Aligned_cols=106 Identities=22% Similarity=0.415 Sum_probs=76.5
Q ss_pred hhHHHHHhccccceeeeecCCcchhhhhccccccc--cccccccccccchhHHHHhhhhhccee--eeee----cCCCCC
Q 024788 81 IPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEET--EAWGVEPYDIEDADARCKSLVHKGIVR--VADI----KFPLPY 152 (262)
Q Consensus 81 iP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe~t--EAWGVEPydied~d~~CKsLvrKGiVR--vADI----kfpLPY 152 (262)
-++|...+|. -|||+-|+|+. +.| ..+|--|||=|=+-+.++.||++|+++ +.|. |+.++-
T Consensus 260 s~~~~~~~G~------~v~se~lti~D-----dp~~~~~~gs~~fDdEGv~t~~~~lIe~GvL~~yl~~~~sA~~~G~~~ 328 (454)
T COG0312 260 SSLLADKLGK------RVASELLTIID-----DPTLPGGLGSYPFDDEGVPTRRTVLIENGVLKGYLHDRYSARKLGLES 328 (454)
T ss_pred chHhhhhhhh------hhcCceeEEEe-----CCCCCCCccCcccCCCCCccceeEEEEcCEEeehhcchhhHHHhCCCc
Confidence 3446666666 68999999874 333 479999999999999999999999986 4454 456766
Q ss_pred ----CCCCccEEEeccc-ccccChhhhccccccchhhccCceEEEecCCcch
Q 024788 153 ----RAKSFPLVIVSDA-LDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQ 199 (262)
Q Consensus 153 ----R~kSFslVivSDa-LDyLspryLNkTLPeLaRvsadglViF~G~Pgqq 199 (262)
|..||+.+...-. =-|+.|- +.++-||-+=--+||.|-.-.=||.
T Consensus 329 TGnar~~~~~~~p~~rm~N~~i~~G--~~s~eeli~~~~~Giyv~~~~gg~~ 378 (454)
T COG0312 329 TGNARRGSYAHVPIPRMTNTYIEPG--DYSFEELIEDVKRGLYVTNLWGGQN 378 (454)
T ss_pred CcccccccCCcCCccceecccccCC--CCCHHHHHHhhCcEEEEecccCcee
Confidence 5677765554333 2477788 8888888777777888754322665
No 113
>PLN02366 spermidine synthase
Probab=24.30 E-value=1.5e+02 Score=27.46 Aligned_cols=122 Identities=19% Similarity=0.221 Sum_probs=66.6
Q ss_pred cCCccchHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccccccccccccccccc-hhHHHHhhhhh---c----
Q 024788 68 EGDFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIED-ADARCKSLVHK---G---- 139 (262)
Q Consensus 68 eg~~sCt~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied-~d~~CKsLvrK---G---- 139 (262)
+.|...-.|.+-.+|.+. =..-++||.||=.++.++..+++-. ....|.--||+. +-..||....+ |
T Consensus 71 ~~de~~Y~e~l~h~~l~~---~~~pkrVLiIGgG~G~~~rellk~~--~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dp 145 (308)
T PLN02366 71 ERDECAYQEMITHLPLCS---IPNPKKVLVVGGGDGGVLREIARHS--SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDP 145 (308)
T ss_pred CccHHHHHHHHHHHHHhh---CCCCCeEEEEcCCccHHHHHHHhCC--CCCeEEEEECCHHHHHHHHHhhhhhccccCCC
Confidence 334444456666666652 2335799999999999999998753 223343444554 44556664321 2
Q ss_pred --ceeeeeecCCCC-CCCCCccEEEecccccccCh-------hhhccccccchhhccCceEEE-ecCCcc
Q 024788 140 --IVRVADIKFPLP-YRAKSFPLVIVSDALDYLSP-------KYLNKTLPDLARVASDGVLIF-AGYPGQ 198 (262)
Q Consensus 140 --iVRvADIkfpLP-YR~kSFslVivSDaLDyLsp-------ryLNkTLPeLaRvsadglViF-~G~Pgq 198 (262)
-+.++|----|. .-.+.|++||+ |+-|--.| .++... ..++..||+++. ++.|-.
T Consensus 146 Rv~vi~~Da~~~l~~~~~~~yDvIi~-D~~dp~~~~~~L~t~ef~~~~---~~~L~pgGvlv~q~~s~~~ 211 (308)
T PLN02366 146 RVNLHIGDGVEFLKNAPEGTYDAIIV-DSSDPVGPAQELFEKPFFESV---ARALRPGGVVCTQAESMWL 211 (308)
T ss_pred ceEEEEChHHHHHhhccCCCCCEEEE-cCCCCCCchhhhhHHHHHHHH---HHhcCCCcEEEECcCCccc
Confidence 134456311111 11467999886 66553222 222211 236788999865 344443
No 114
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=24.25 E-value=3.6e+02 Score=22.76 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=24.9
Q ss_pred ccccchhhccCceEEEecCCcchhhhHHhhhhcCCccc
Q 024788 177 TLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAK 214 (262)
Q Consensus 177 TLPeLaRvsadglViF~G~PgqqrakvaelskfgrpaK 214 (262)
.+..|.+-..|. |++.+.|+..-.-+.++.+.|-..+
T Consensus 182 ~~~~l~~~~~d~-v~~~~~~~~~~~~~~~~~~~~~~~~ 218 (343)
T PF13458_consen 182 LVQQLKSAGPDV-VVLAGDPADAAAFLRQLRQLGLKPP 218 (343)
T ss_dssp HHHHHHHTTTSE-EEEESTHHHHHHHHHHHHHTTGCSC
T ss_pred HHHHHhhcCCCE-EEEeccchhHHHHHHHHHhhccccc
Confidence 444555556666 6666777777777778887776654
No 115
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.80 E-value=1.7e+02 Score=26.62 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=82.5
Q ss_pred HhhhhHHHHHhccccc----eeeeecCCcchhhhhccccccccccc---cccccccchhHHHHhhhhhcceeeeeecCCC
Q 024788 78 QRAIPILKKAYGDSMH----KVLHVGPDTCSVVSTLLKEEETEAWG---VEPYDIEDADARCKSLVHKGIVRVADIKFPL 150 (262)
Q Consensus 78 ~~aiP~LkkaYGdsM~----kVLHVGPdtC~VVs~LLkEe~tEAWG---VEPydied~d~~CKsLvrKGiVRvADIkfpL 150 (262)
.+++.++++.+.+=+. +.+|||=|-..-... ....+.|| ..---.+-....|+-+..+|.
T Consensus 113 ~~t~~fi~~li~ev~~~f~s~~~HIG~DE~~~~g~---~~~~~~~~~~~~~~l~~~~~~~v~~~v~~~g~---------- 179 (301)
T cd06565 113 PKTYDFIEEMIRQVLELHPSKYIHIGMDEAYDLGR---GRSLRKHGNLGRGELYLEHLKKVLKIIKKRGP---------- 179 (301)
T ss_pred hhHHHHHHHHHHHHHHhCCCCeEEECCCcccccCC---CHHHHHhcCCCHHHHHHHHHHHHHHHHHHcCC----------
Confidence 5678888888776554 789999887654210 11111121 111112334445555555553
Q ss_pred CCCCCCccEEEecccccccChhhhccccccchhhccCceEEEecCCc-ch--hhhHHhhhhcCCccccccchh-HHHHHH
Q 024788 151 PYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPG-QQ--RAKVAELSKFGRPAKMRSSSW-WIRYFV 226 (262)
Q Consensus 151 PYR~kSFslVivSDaLDyLspryLNkTLPeLaRvsadglViF~G~Pg-qq--rakvaelskfgrpaK~rsssW-W~r~F~ 226 (262)
..++=.|.+..++ ..--.+.++..|-++..=.|-. +. .....-..+.|.+.-+-...| |.+++
T Consensus 180 -------~~~~W~D~~~~~~-----~~~~~~~~l~~~v~~~~W~y~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~- 246 (301)
T cd06565 180 -------KPMMWDDMLRKLS-----IEPEALSGLPKLVTPVVWDYYADLDEHDRPIGLWKKYGSVFAVAWGASAWKGAT- 246 (301)
T ss_pred -------EEEEEhHHhcCCC-----CChHHHhCCCCCeEEEEecCcCCcchhhHhHHHHHHhCCCceEeeeechhccCC-
Confidence 3566778876651 1111233455665555555433 33 367778888898888877777 88876
Q ss_pred HhccccchHHHHHHHHHHhhcc
Q 024788 227 QTSLEENEPAVKKFEQAASKKS 248 (262)
Q Consensus 227 qt~LeEnE~a~KkFeqa~~k~s 248 (262)
...+..-+..|.|-+++.+..
T Consensus 247 -~~~~~~~~n~~~~~~~~~~~~ 267 (301)
T cd06565 247 -PPNDKHLENIKSWLKAAKKNG 267 (301)
T ss_pred -CCHHHHHHHHHHHHHHHHHCC
Confidence 555555666777777775543
No 116
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=23.48 E-value=69 Score=29.04 Aligned_cols=103 Identities=27% Similarity=0.305 Sum_probs=71.7
Q ss_pred cceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHHhhhhhccee--eeeecCCCCCCCCCccEEEecccc
Q 024788 92 MHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKGIVR--VADIKFPLPYRAKSFPLVIVSDAL 166 (262)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPyd--ied~d~~CKsLvrKGiVR--vADIkfpLPYR~kSFslVivSDaL 166 (262)
=.+||-||=.|=-+--.|.|+- ..+.+|+++-+ ++-+-..|+.+=-++ |+ ++|. .-|||.-+||++|.+|=.|
T Consensus 52 g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dA-e~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDA-ENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEech-hhCCCCCCccCEEEeeehh
Confidence 3589999888866554444433 36778876543 455555555443333 32 5554 3699999999999999999
Q ss_pred cccChhhhccccccchhhccCce---EEEecCCcc
Q 024788 167 DYLSPKYLNKTLPDLARVASDGV---LIFAGYPGQ 198 (262)
Q Consensus 167 DyLspryLNkTLPeLaRvsadgl---ViF~G~Pgq 198 (262)
..++ ..++-|-|+.||---|- |+=.+.|..
T Consensus 130 rnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 130 RNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred hcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 9998 78999999999987654 555556543
No 117
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=23.04 E-value=2.3e+02 Score=25.39 Aligned_cols=65 Identities=15% Similarity=0.257 Sum_probs=39.5
Q ss_pred ceeeeecCCcchhhhhccccc-cccccccccc--cccchhHHHHhhhhhcc-----eeeeeecCCCCCCCCCccEEEe
Q 024788 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPY--DIEDADARCKSLVHKGI-----VRVADIKFPLPYRAKSFPLVIV 162 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPy--died~d~~CKsLvrKGi-----VRvADIkfpLPYR~kSFslViv 162 (262)
.+||-+|-.|..+.-.|.+.- ..+..|||.. -++-+..|.+.. |+ +..+|+--++| ..+|++||.
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~---~~~~~i~~~~~D~~~~~~--~~~fD~Iv~ 195 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH---GLEDRVTLIQSDLFAALP--GRKYDLIVS 195 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc---CCCCcEEEEECchhhccC--CCCccEEEE
Confidence 579999999987766666543 3466666543 234445554432 32 35577643443 457998875
No 118
>KOG0829 consensus 60S ribosomal protein L18A [Translation, ribosomal structure and biogenesis]
Probab=22.85 E-value=33 Score=30.65 Aligned_cols=10 Identities=70% Similarity=1.248 Sum_probs=9.1
Q ss_pred eeecCCCCCC
Q 024788 144 ADIKFPLPYR 153 (262)
Q Consensus 144 ADIkfpLPYR 153 (262)
++||||||.|
T Consensus 141 ~kikFPL~~r 150 (169)
T KOG0829|consen 141 SKIKFPLPHR 150 (169)
T ss_pred cCcccccccc
Confidence 5799999999
No 119
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=22.68 E-value=52 Score=23.87 Aligned_cols=70 Identities=20% Similarity=0.199 Sum_probs=39.1
Q ss_pred ceeeeecCCcchhhhhccccccccccccccc--cccchhHHHHhh--hhhcceeeeeecCCC-CCCCCCccEEEe
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSL--VHKGIVRVADIKFPL-PYRAKSFPLVIV 162 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPy--died~d~~CKsL--vrKGiVRvADIkfpL-PYR~kSFslViv 162 (262)
.+||.+|-.+..+...+++....+..|||-- -++-+-.+-+.. -.+=-+.++|+.-.. +.+..+|++||.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEE
Confidence 3789999999998888887764555555432 222222222221 011235566664444 466677777664
No 120
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.67 E-value=59 Score=27.18 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=8.6
Q ss_pred HHHHHhhhhhhc
Q 024788 40 LVGAFLLIGYAF 51 (262)
Q Consensus 40 ~vgailli~Y~y 51 (262)
++|.||||.|+-
T Consensus 77 vIg~Illi~y~i 88 (122)
T PF01102_consen 77 VIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456678888876
No 121
>PF15060 PPDFL: Differentiation and proliferation regulator
Probab=22.55 E-value=14 Score=30.93 Aligned_cols=16 Identities=31% Similarity=0.910 Sum_probs=12.3
Q ss_pred ccccchhHHHHHHHhc
Q 024788 214 KMRSSSWWIRYFVQTS 229 (262)
Q Consensus 214 K~rsssWW~r~F~qt~ 229 (262)
|.-...||..||....
T Consensus 48 kad~g~WW~sfFF~k~ 63 (110)
T PF15060_consen 48 KADPGHWWASFFFGKS 63 (110)
T ss_pred ccCCCcceEEeEeccc
Confidence 5567899999987543
No 122
>PRK08433 flagellar motor switch protein; Validated
Probab=22.35 E-value=23 Score=29.08 Aligned_cols=30 Identities=17% Similarity=0.117 Sum_probs=26.1
Q ss_pred hccccccchhhccCceEEEecCCcchhhhH
Q 024788 174 LNKTLPDLARVASDGVLIFAGYPGQQRAKV 203 (262)
Q Consensus 174 LNkTLPeLaRvsadglViF~G~Pgqqrakv 203 (262)
||+...|-..|-.+|..+|.|.||+...+.
T Consensus 61 Ld~~~~e~v~v~V~g~~~f~G~~G~~~~k~ 90 (111)
T PRK08433 61 LEKPAGESVELYINGRIIGKGEVMVYEKNL 90 (111)
T ss_pred eCCCCCCCEEEEECCEEEEEEEEEEECCEE
Confidence 678788899999999999999999987553
No 123
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=22.33 E-value=21 Score=25.61 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=23.3
Q ss_pred hccccccchhhccCceEEEecCCcchhhh
Q 024788 174 LNKTLPDLARVASDGVLIFAGYPGQQRAK 202 (262)
Q Consensus 174 LNkTLPeLaRvsadglViF~G~Pgqqrak 202 (262)
|++...+-+.+..+|..+|.|.+|++.-+
T Consensus 37 l~~~~~~~v~l~v~g~~~~~g~lg~~~~~ 65 (77)
T PF01052_consen 37 LDKPADEPVELRVNGQPIFRGELGRVNGR 65 (77)
T ss_dssp ECCESSTEEEEEETTEEEEEEEEEEETTE
T ss_pred eCCCCCCCEEEEECCEEEEEEEEEEECCE
Confidence 44555588899999999999999987543
No 124
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=22.30 E-value=47 Score=31.37 Aligned_cols=13 Identities=38% Similarity=1.083 Sum_probs=11.2
Q ss_pred eEEEecCCcchhh
Q 024788 189 VLIFAGYPGQQRA 201 (262)
Q Consensus 189 lViF~G~Pgqqra 201 (262)
|||||||||--|.
T Consensus 3 LiIlTGyPgsGKT 15 (261)
T COG4088 3 LIILTGYPGSGKT 15 (261)
T ss_pred eEEEecCCCCCch
Confidence 7999999998664
No 125
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=22.18 E-value=1.4e+02 Score=25.06 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=45.9
Q ss_pred EEEecccccccChhhh-ccccccchhhccCceEEEecCCcchhhhHHhhh--------hcCCccccccchhHHHHHHH
Q 024788 159 LVIVSDALDYLSPKYL-NKTLPDLARVASDGVLIFAGYPGQQRAKVAELS--------KFGRPAKMRSSSWWIRYFVQ 227 (262)
Q Consensus 159 lVivSDaLDyLspryL-NkTLPeLaRvsadglViF~G~Pgqqrakvaels--------kfgrpaK~rsssWW~r~F~q 227 (262)
.||++|..-- .+++ +++.+-+-+++.+-++.++|..+-.+.-...+. ++|++...++-..|.+...|
T Consensus 39 VvlaaD~~~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~ 114 (209)
T cd01911 39 VVLAVEKKVT--SKLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQ 114 (209)
T ss_pred EEEEEEecCC--ccccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 4666776542 3333 356777888999999999998876544443332 67888888888888776554
No 126
>PRK10927 essential cell division protein FtsN; Provisional
Probab=22.10 E-value=1.1e+02 Score=29.60 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=42.5
Q ss_pred CceEEEec---CCcchhhhHHhhhhcCCccccccchhHHHHHHHhccccchHHHHHHHHHHhhccCCCCceeee
Q 024788 187 DGVLIFAG---YPGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEENEPAVKKFEQAASKKSYKPNCQVFH 257 (262)
Q Consensus 187 dglViF~G---~PgqqrakvaelskfgrpaK~rsssWW~r~F~qt~LeEnE~a~KkFeqa~~k~sY~p~cqiFH 257 (262)
...+|=.| ...+-..-.++|...|=+|......=|.|-++ |-..+.+...+=.......++ .+|-+++
T Consensus 246 ~~~~VQvGSF~n~~nAE~LrAkLa~~G~~A~I~~~g~~~RVrV--GPf~sr~eAe~a~~rLk~aGi-s~ci~~a 316 (319)
T PRK10927 246 RRWMVQCGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVI--GPVKGKENADSTLNRLKMAGH-TNCIRLA 316 (319)
T ss_pred CcEEEEeCccCCHHHHHHHHHHHHHcCCeeEEccCCcEEEEEe--CCCCCHHHHHHHHHHHHHCCC-Cceeecc
Confidence 45888888 45555566788999998888876544656554 444444444443333334455 7787765
No 127
>PF01630 Glyco_hydro_56: Hyaluronidase; InterPro: IPR018155 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 56 GH56 from CAZY comprises enzymes with only one known activity; hyaluronidase 3.2.1.35 from EC. The venom of Apis mellifera (Honeybee) contains several biologically-active peptides and two enzymes, one of which is a hyaluronidase []. The amino acid sequence of bee venom hyaluronidase contains 349 amino acids, and includes four cysteines and a number of potential glycosylation sites []. The sequence shows a high degree of similarity to PH-20, a membrane protein of mammalian sperm involved in sperm-egg adhesion, supporting the view that hyaluronidases play a role in fertilisation []. PH-20 is required for sperm adhesion to the egg zona pellucida; it is located on both the sperm plasma membrane and acrosomal membrane []. The amino acid sequence of the mature protein contains 468 amino acids, and includes six potential N-linked glycosylation sites and twelve cysteines, eight of which are tightly clustered near the C terminus [].; GO: 0004415 hyalurononglucosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1FCQ_A 1FCV_A 1FCU_A 2J88_A 2PE4_A 2ATM_A.
Probab=21.87 E-value=31 Score=33.08 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=29.3
Q ss_pred ccccccChhhhccccccchhhccCceEEEec-CCcchhhhHHhhh
Q 024788 164 DALDYLSPKYLNKTLPDLARVASDGVLIFAG-YPGQQRAKVAELS 207 (262)
Q Consensus 164 DaLDyLspryLNkTLPeLaRvsadglViF~G-~Pgqqrakvaels 207 (262)
...+|||-.-|..|+-|.|..-+|||||--+ .=-+-+.+-.+|.
T Consensus 274 ~~~~fLs~~DL~~TigesaalGa~GvViWG~s~~~~s~~~C~~l~ 318 (337)
T PF01630_consen 274 STDEFLSQEDLVNTIGESAALGAAGVVIWGSSNDVNSKESCQKLR 318 (337)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT-SEEEEE--GGGSSSHHHHHHHH
T ss_pred CccccchhhHHHHHHHHHHHcCCCeEEEeeccccccChHHHHHHH
Confidence 4689999999999999999999999999866 2233334444443
No 128
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=21.75 E-value=50 Score=23.03 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=17.6
Q ss_pred chhHHHHhhhhhcceeeeeec
Q 024788 127 DADARCKSLVHKGIVRVADIK 147 (262)
Q Consensus 127 d~d~~CKsLvrKGiVRvADIk 147 (262)
.+...-++|+++|+|+..+-+
T Consensus 38 ~v~~~L~~L~~~GlV~~~~~~ 58 (68)
T PF01978_consen 38 TVYRALKSLEEKGLVEREEGR 58 (68)
T ss_dssp HHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEcCc
Confidence 356778999999999998855
No 129
>PRK04011 peptide chain release factor 1; Provisional
Probab=21.51 E-value=37 Score=32.62 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=29.4
Q ss_pred hccCceEEEecC-----CcchhhhHHhhhhcCCccccccchhHHHHHHH
Q 024788 184 VASDGVLIFAGY-----PGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQ 227 (262)
Q Consensus 184 vsadglViF~G~-----PgqqrakvaelskfgrpaK~rsssWW~r~F~q 227 (262)
+-..|+|||+|. ||+.+----++. -++|+..---.||.+|++.
T Consensus 83 ~p~nGl~~f~g~~~~~~~~~~~~~t~~i~-p~~~i~~~~y~~d~~f~le 130 (411)
T PRK04011 83 PPENGLVIFCGAVPIGGPGTEDMETYVIE-PPEPVPTFFYRCDSEFHTE 130 (411)
T ss_pred CCCCeEEEEEeecccCCCCCceEEEEEEc-CCCccEEEEecCCcHHHHH
Confidence 345899999996 466543334444 6777766556699998865
No 130
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=21.32 E-value=62 Score=25.79 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=29.8
Q ss_pred ecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcceeee
Q 024788 98 VGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVA 144 (262)
Q Consensus 98 VGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGiVRvA 144 (262)
.|||.=..+++.+ -.+++++...|+.|.+.|+|.=-
T Consensus 19 ~~~Dy~k~ia~~l-----------~~~~~~v~~~l~~Le~~GLler~ 54 (92)
T PF10007_consen 19 AGPDYAKSIARRL-----------KIPLEEVREALEKLEEMGLLERV 54 (92)
T ss_pred HCCCcHHHHHHHH-----------CCCHHHHHHHHHHHHHCCCeEEe
Confidence 4888888888876 46789999999999999998643
No 131
>PF08346 AntA: AntA/AntB antirepressor; InterPro: IPR013557 In Escherichia coli the two proteins AntA and AntB have 62% amino acid identities near their N termini. AntA appears to be encoded by a truncated and divergent copy of AntB. The two proteins are homologous to putative antirepressors found in numerous bacteriophages, such as the hypothetical antirepressor protein encoded by the gene LO142 of the Bacteriophage 933W.
Probab=21.14 E-value=65 Score=24.42 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=27.2
Q ss_pred HHhhhhcCCccccccchhHHHHHHHhccccchHH
Q 024788 203 VAELSKFGRPAKMRSSSWWIRYFVQTSLEENEPA 236 (262)
Q Consensus 203 vaelskfgrpaK~rsssWW~r~F~qt~LeEnE~a 236 (262)
++||-+|.-- |-+-++|+.+-..+.++.||+.-
T Consensus 3 AR~Lh~~L~v-~~~Fs~Wik~ri~~y~f~e~~Df 35 (71)
T PF08346_consen 3 ARDLHEFLEV-KKRFSTWIKRRIEEYGFVENVDF 35 (71)
T ss_pred HHHHHHHHcC-CCcHHHHHHHHhhhcCcccCCCc
Confidence 4677777654 88999999999999999999753
No 132
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.14 E-value=40 Score=33.18 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=32.3
Q ss_pred CCCCCccEEEecccc-cccChhhhccccccchhhccCceEEEecCCcchhhhHHh
Q 024788 152 YRAKSFPLVIVSDAL-DYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAE 205 (262)
Q Consensus 152 YR~kSFslVivSDaL-DyLspryLNkTLPeLaRvsadglViF~G~Pgqqrakvae 205 (262)
|||++|+=||.-+.+ ..|.--+-+..+| ...+|+|-||-=|...|.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~~~l~--------ha~Lf~Gp~G~GKTt~A~ 56 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQQYLH--------HAYLFTGTRGVGKTTISR 56 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHhCCCC--------eeEEEECCCCCCHHHHHH
Confidence 999999998876643 4444333343333 367999999999887664
No 133
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=21.11 E-value=73 Score=25.10 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=16.6
Q ss_pred hhHHHHHHHhccccchHHHHH
Q 024788 219 SWWIRYFVQTSLEENEPAVKK 239 (262)
Q Consensus 219 sWW~r~F~qt~LeEnE~a~Kk 239 (262)
.-|.+||-+-||.|||--.++
T Consensus 12 ~~wk~F~R~LGLsdn~Ie~~E 32 (77)
T cd08815 12 RRWKEFVRTLGLREAEIEAVE 32 (77)
T ss_pred HHHHHHHHHcCCcHhHHHHHH
Confidence 359999999999999943333
No 134
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=20.94 E-value=53 Score=29.69 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=10.6
Q ss_pred hHHHHHHHHhhhhhhc
Q 024788 36 VGLVLVGAFLLIGYAF 51 (262)
Q Consensus 36 i~lv~vgailli~Y~y 51 (262)
++|..+..|.||+|+.
T Consensus 279 ~~La~lvlivLiaYli 294 (306)
T PF01299_consen 279 AALAGLVLIVLIAYLI 294 (306)
T ss_pred HHHHHHHHHHHHhhee
Confidence 3455566667788887
No 135
>smart00751 BSD domain in transcription factors and synapse-associated proteins.
Probab=20.89 E-value=66 Score=22.16 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=20.0
Q ss_pred HHhhhhcCCccccccchhHHHHHHHh
Q 024788 203 VAELSKFGRPAKMRSSSWWIRYFVQT 228 (262)
Q Consensus 203 vaelskfgrpaK~rsssWW~r~F~qt 228 (262)
++++-+=--|.+|-....|.|||..-
T Consensus 22 l~~~~~~lVP~~~se~~FW~ryF~~~ 47 (51)
T smart00751 22 LKKLYNELVPKVLSEEEFWARYFYLL 47 (51)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 44444446799999999999999754
No 136
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=20.47 E-value=1.5e+02 Score=25.64 Aligned_cols=81 Identities=27% Similarity=0.272 Sum_probs=47.8
Q ss_pred cceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhc-ceeeeee-cCCCCCCCCCcc--EEEeccc
Q 024788 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADI-KFPLPYRAKSFP--LVIVSDA 165 (262)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKG-iVRvADI-kfpLPYR~kSFs--lVivSDa 165 (262)
=..||.+||.+-.+-..|++.. ....+||+-+ ++.+..++.. ..+ -+..+|+ ++|++ +|. .+|+|+.
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~----~~d~~~~vvsNl 102 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP----DFPKQLKVVSNL 102 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh----HcCCcceEEEcC
Confidence 3589999999999888887665 4577777632 1112222211 011 1334565 34444 343 6778887
Q ss_pred ccccChhhhccccc
Q 024788 166 LDYLSPKYLNKTLP 179 (262)
Q Consensus 166 LDyLspryLNkTLP 179 (262)
--+++...|.+.|-
T Consensus 103 Py~i~~~il~~ll~ 116 (253)
T TIGR00755 103 PYNISSPLIFKLLE 116 (253)
T ss_pred ChhhHHHHHHHHhc
Confidence 66677777776663
No 137
>PRK06762 hypothetical protein; Provisional
Probab=20.39 E-value=2.2e+02 Score=22.30 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=24.1
Q ss_pred eEEEecCCcchhhhHHhh--hhcCCccccccchhHHH
Q 024788 189 VLIFAGYPGQQRAKVAEL--SKFGRPAKMRSSSWWIR 223 (262)
Q Consensus 189 lViF~G~Pgqqrakvael--skfgrpaK~rsssWW~r 223 (262)
+|+++|.||-=|..+++. ..+|..+..-+..+|.+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 789999999999888764 34555555445555544
No 138
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=20.22 E-value=90 Score=25.57 Aligned_cols=51 Identities=33% Similarity=0.380 Sum_probs=31.2
Q ss_pred cccccccChhhhccccccchhhccCceEEEecCCcch-hhhHHhhhhcCCcccc
Q 024788 163 SDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQ-RAKVAELSKFGRPAKM 215 (262)
Q Consensus 163 SDaLDyLspryLNkTLPeLaRvsadglViF~G~Pgqq-rakvaelskfgrpaK~ 215 (262)
.+..+..++.-.++.+-.+.+ -.||+|+.... .+. ..-+.++.|.|-|+=+
T Consensus 37 ~~~~~~~~~~~~~~~i~~~~~-~vdgiii~~~~-~~~~~~~i~~~~~~~ipvV~ 88 (275)
T cd06307 37 IHFVESFDPAALAAALLRLGA-RSDGVALVAPD-HPQVRAAVARLAAAGVPVVT 88 (275)
T ss_pred EEEccCCCHHHHHHHHHHHHh-cCCEEEEeCCC-cHHHHHHHHHHHHCCCcEEE
Confidence 333344556556666666666 78999886543 232 2346777888888654
No 139
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=20.04 E-value=56 Score=24.24 Aligned_cols=17 Identities=41% Similarity=0.583 Sum_probs=12.9
Q ss_pred chhhHHHHHHHHhhhhh
Q 024788 33 LLSVGLVLVGAFLLIGY 49 (262)
Q Consensus 33 llsi~lv~vgailli~Y 49 (262)
.|.+.++++|++||+..
T Consensus 2 Wl~V~~iilg~~ll~~L 18 (49)
T PF05624_consen 2 WLFVVLIILGALLLLLL 18 (49)
T ss_pred eEEEeHHHHHHHHHHHH
Confidence 35678899999887754
No 140
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=20.04 E-value=3.2e+02 Score=24.46 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=60.4
Q ss_pred ceeeeecCCcchhhhhccccccccccccccccccch-hHHH-Hhhhhhc-cee----eeeecC--CCCCCC-CCccEEEe
Q 024788 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDA-DARC-KSLVHKG-IVR----VADIKF--PLPYRA-KSFPLVIV 162 (262)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~-d~~C-KsLvrKG-iVR----vADIkf--pLPYR~-kSFslViv 162 (262)
.+||-+|..|+.....|++.-.. ..-|-+.|+... =..| +.|.+.. -++ .+|+-- ++|-.. .+..+++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~-~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ-PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc-CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 46999999999999888876431 223445555542 1333 3343321 132 477753 344322 22455666
Q ss_pred cc-cccccChhhhccccccchhhcc-CceEEE
Q 024788 163 SD-ALDYLSPKYLNKTLPDLARVAS-DGVLIF 192 (262)
Q Consensus 163 SD-aLDyLspryLNkTLPeLaRvsa-dglViF 192 (262)
++ .+-+++|......|-+++++=. +|.++|
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 55 6777899999999999988755 455555
Done!