Query 024790
Match_columns 262
No_of_seqs 173 out of 1862
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 07:26:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02300 lactoylglutathione ly 100.0 4.2E-44 9.1E-49 289.8 32.4 262 1-262 25-286 (286)
2 TIGR03211 catechol_2_3 catecho 100.0 3.5E-33 7.5E-38 228.6 27.8 232 1-254 5-265 (303)
3 TIGR02295 HpaD 3,4-dihydroxyph 100.0 1.2E-32 2.5E-37 224.6 28.7 231 1-256 5-258 (294)
4 TIGR03213 23dbph12diox 2,3-dih 100.0 4.7E-32 1E-36 220.0 27.4 233 1-256 4-265 (286)
5 KOG2943 Predicted glyoxalase [ 100.0 5E-32 1.1E-36 200.4 19.8 246 2-262 19-278 (299)
6 TIGR01263 4HPPD 4-hydroxypheny 99.9 8.6E-24 1.9E-28 175.8 24.5 221 1-228 3-267 (353)
7 COG2514 Predicted ring-cleavag 99.9 1.8E-23 3.8E-28 159.7 20.0 190 1-210 11-243 (265)
8 PLN02875 4-hydroxyphenylpyruva 99.9 7E-21 1.5E-25 157.0 22.5 222 1-228 1-295 (398)
9 PLN02367 lactoylglutathione ly 99.9 3E-21 6.4E-26 147.4 15.1 128 130-259 75-227 (233)
10 PRK10291 glyoxalase I; Provisi 99.9 5E-21 1.1E-25 137.1 14.1 122 135-256 1-122 (129)
11 TIGR00068 glyox_I lactoylgluta 99.9 1.8E-20 3.9E-25 137.7 15.4 134 125-258 12-145 (150)
12 PRK10291 glyoxalase I; Provisi 99.9 5E-20 1.1E-24 131.9 16.2 126 5-130 1-126 (129)
13 TIGR00068 glyox_I lactoylgluta 99.9 7.6E-20 1.6E-24 134.3 16.6 130 1-130 18-147 (150)
14 PLN02367 lactoylglutathione ly 99.8 8.8E-20 1.9E-24 139.4 16.4 125 1-127 76-225 (233)
15 PLN03042 Lactoylglutathione ly 99.8 8.9E-20 1.9E-24 136.7 14.9 127 129-257 26-177 (185)
16 cd08342 HPPD_N_like N-terminal 99.8 9.1E-20 2E-24 131.7 14.3 123 131-260 1-129 (136)
17 cd07233 Glyoxalase_I Glyoxalas 99.8 2.9E-19 6.4E-24 126.4 14.8 120 131-252 1-121 (121)
18 KOG0638 4-hydroxyphenylpyruvat 99.8 3.6E-20 7.8E-25 143.2 10.4 255 1-255 18-338 (381)
19 PLN02300 lactoylglutathione ly 99.8 3.3E-19 7.1E-24 144.5 15.4 132 126-257 20-151 (286)
20 cd07257 THT_oxygenase_C The C- 99.8 1.3E-19 2.7E-24 133.4 11.3 123 130-259 1-130 (153)
21 PLN03042 Lactoylglutathione ly 99.8 1.1E-18 2.5E-23 130.8 16.4 124 1-126 28-176 (185)
22 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 4.7E-19 1E-23 129.0 14.0 122 129-254 2-141 (142)
23 cd08358 Glo_EDI_BRP_like_21 Th 99.8 7.7E-19 1.7E-23 123.6 14.4 114 130-253 2-126 (127)
24 cd07233 Glyoxalase_I Glyoxalas 99.8 1.3E-18 2.8E-23 123.0 15.8 120 1-122 1-121 (121)
25 PRK11478 putative lyase; Provi 99.8 1.9E-18 4.1E-23 123.7 14.0 121 129-254 5-129 (129)
26 cd08360 MhqB_like_C C-terminal 99.8 2.3E-18 5E-23 124.0 14.5 121 128-258 1-124 (134)
27 cd07243 2_3_CTD_C C-terminal d 99.8 2.2E-18 4.7E-23 125.3 14.5 118 128-254 4-125 (143)
28 TIGR03645 glyox_marine lactoyl 99.8 1.8E-18 3.8E-23 128.4 14.2 126 128-256 2-153 (162)
29 cd08342 HPPD_N_like N-terminal 99.8 4.9E-18 1.1E-22 122.6 16.1 121 1-128 1-127 (136)
30 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 3.8E-18 8.2E-23 124.2 15.5 120 1-124 4-141 (142)
31 PRK11478 putative lyase; Provi 99.8 5.3E-18 1.1E-22 121.3 15.1 119 1-123 7-128 (129)
32 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 2.2E-18 4.8E-23 122.5 12.9 119 130-252 1-125 (125)
33 cd07265 2_3_CTD_N N-terminal d 99.8 4.2E-18 9E-23 120.7 13.3 116 129-256 3-121 (122)
34 cd08358 Glo_EDI_BRP_like_21 Th 99.8 1.7E-17 3.6E-22 116.8 15.5 113 1-123 3-126 (127)
35 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 8.2E-18 1.8E-22 119.5 13.8 120 129-253 2-125 (125)
36 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 1.3E-17 2.8E-22 118.6 14.6 118 1-122 2-125 (125)
37 cd07237 BphC1-RGP6_C_like C-te 99.8 9.4E-18 2E-22 123.6 13.9 125 127-259 6-136 (154)
38 cd07247 SgaA_N_like N-terminal 99.8 1.3E-17 2.8E-22 116.7 13.8 114 131-253 1-114 (114)
39 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 2.4E-17 5.1E-22 117.1 15.4 119 1-123 4-125 (125)
40 cd07257 THT_oxygenase_C The C- 99.8 1.2E-17 2.7E-22 122.8 13.5 121 1-125 2-126 (153)
41 cd07258 PpCmtC_C C-terminal do 99.8 1.4E-17 3.1E-22 120.5 13.5 116 132-259 1-119 (141)
42 TIGR03645 glyox_marine lactoyl 99.8 2.8E-17 6E-22 122.0 15.1 123 1-126 5-153 (162)
43 cd07243 2_3_CTD_C C-terminal d 99.8 4.9E-17 1.1E-21 118.2 15.7 115 1-124 7-125 (143)
44 cd07256 HPCD_C_class_II C-term 99.8 2.3E-17 4.9E-22 122.5 14.1 120 128-256 1-125 (161)
45 cd08360 MhqB_like_C C-terminal 99.8 4.9E-17 1.1E-21 117.1 15.4 115 1-125 4-121 (134)
46 TIGR03081 metmalonyl_epim meth 99.8 2E-17 4.3E-22 118.1 13.0 119 130-253 1-128 (128)
47 cd08363 FosB FosB, a fosfomyci 99.8 3.4E-17 7.3E-22 117.4 13.7 114 1-125 1-116 (131)
48 cd07265 2_3_CTD_N N-terminal d 99.8 4.6E-17 1E-21 115.3 14.2 113 1-125 5-120 (122)
49 PRK04101 fosfomycin resistance 99.8 6.8E-17 1.5E-21 117.1 14.8 114 1-125 5-120 (139)
50 cd07263 Glo_EDI_BRP_like_16 Th 99.8 3.2E-17 6.9E-22 115.3 12.8 117 133-253 1-119 (119)
51 PF00903 Glyoxalase: Glyoxalas 99.7 5.7E-18 1.2E-22 120.7 8.8 120 130-251 1-128 (128)
52 cd07237 BphC1-RGP6_C_like C-te 99.7 9.1E-17 2E-21 118.3 15.2 117 1-125 10-132 (154)
53 cd08347 PcpA_C_like C-terminal 99.7 6.6E-17 1.4E-21 119.2 14.2 117 130-255 1-121 (157)
54 TIGR03081 metmalonyl_epim meth 99.7 4.8E-17 1E-21 116.1 12.9 118 1-123 2-128 (128)
55 cd08355 Glo_EDI_BRP_like_14 Th 99.7 1.2E-16 2.5E-21 113.3 14.5 115 134-253 3-121 (122)
56 cd08343 ED_TypeI_classII_C C-t 99.7 1.7E-16 3.7E-21 113.8 15.4 116 2-126 1-119 (131)
57 cd07266 HPCD_N_class_II N-term 99.7 5.1E-17 1.1E-21 114.9 12.4 115 129-256 3-120 (121)
58 PRK04101 fosfomycin resistance 99.7 9.9E-17 2.1E-21 116.2 13.9 116 129-255 3-120 (139)
59 cd07247 SgaA_N_like N-terminal 99.7 2.1E-16 4.6E-21 110.5 15.0 114 1-123 1-114 (114)
60 cd08347 PcpA_C_like C-terminal 99.7 2.4E-16 5.1E-21 116.2 15.8 117 1-126 2-122 (157)
61 COG3185 4-hydroxyphenylpyruvat 99.7 1.5E-16 3.3E-21 125.7 15.0 222 1-228 23-274 (363)
62 cd07239 BphC5-RK37_C_like C-te 99.7 1.8E-16 3.9E-21 115.3 13.9 116 129-258 3-121 (144)
63 cd09011 Glo_EDI_BRP_like_23 Th 99.7 1E-16 2.2E-21 113.2 12.3 113 130-254 2-119 (120)
64 PF00903 Glyoxalase: Glyoxalas 99.7 1.8E-17 3.9E-22 118.1 8.4 119 1-121 2-128 (128)
65 cd08343 ED_TypeI_classII_C C-t 99.7 2.3E-16 4.9E-21 113.2 14.1 118 132-258 1-121 (131)
66 cd07263 Glo_EDI_BRP_like_16 Th 99.7 3.1E-16 6.8E-21 110.2 14.4 116 3-123 1-119 (119)
67 cd07264 Glo_EDI_BRP_like_15 Th 99.7 4E-16 8.7E-21 110.9 15.0 117 1-124 1-125 (125)
68 cd07245 Glo_EDI_BRP_like_9 Thi 99.7 1E-16 2.2E-21 111.7 11.6 113 131-251 1-114 (114)
69 cd09014 BphC-JF8_C_like C-term 99.7 4.6E-16 9.9E-21 116.0 15.5 118 1-124 7-127 (166)
70 cd08363 FosB FosB, a fosfomyci 99.7 1.6E-16 3.5E-21 113.8 12.6 114 131-255 1-116 (131)
71 cd08361 PpCmtC_N N-terminal do 99.7 1.5E-16 3.2E-21 113.0 12.3 113 129-257 5-122 (124)
72 cd09011 Glo_EDI_BRP_like_23 Th 99.7 2.1E-16 4.5E-21 111.6 13.0 112 1-124 3-119 (120)
73 cd09014 BphC-JF8_C_like C-term 99.7 2.7E-16 5.9E-21 117.2 14.1 120 129-254 5-127 (166)
74 cd09013 BphC-JF8_N_like N-term 99.7 1.9E-16 4E-21 112.0 12.6 112 129-255 5-119 (121)
75 cd07264 Glo_EDI_BRP_like_15 Th 99.7 2.7E-16 5.8E-21 111.8 13.5 115 131-254 1-125 (125)
76 cd07245 Glo_EDI_BRP_like_9 Thi 99.7 2.1E-16 4.5E-21 110.1 12.6 113 1-121 1-114 (114)
77 cd08359 Glo_EDI_BRP_like_22 Th 99.7 2.8E-16 6.1E-21 110.7 13.3 112 133-253 4-119 (119)
78 cd07249 MMCE Methylmalonyl-CoA 99.7 3.4E-16 7.3E-21 111.7 13.7 118 131-253 1-128 (128)
79 cd08346 PcpA_N_like N-terminal 99.7 2.3E-16 4.9E-21 112.2 12.7 120 130-252 1-126 (126)
80 PRK06724 hypothetical protein; 99.7 2.4E-16 5.2E-21 112.1 12.6 113 128-256 5-125 (128)
81 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 4.2E-16 9.1E-21 110.6 13.7 117 129-253 2-124 (125)
82 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 6.8E-16 1.5E-20 109.2 14.6 116 134-254 5-122 (122)
83 cd07239 BphC5-RK37_C_like C-te 99.7 5.9E-16 1.3E-20 112.6 14.6 111 1-125 5-118 (144)
84 cd07255 Glo_EDI_BRP_like_12 Th 99.7 8.1E-16 1.8E-20 109.3 15.0 115 1-126 3-121 (125)
85 cd07252 BphC1-RGP6_N_like N-te 99.7 3.3E-16 7.1E-21 110.6 12.7 112 130-255 2-118 (120)
86 cd07252 BphC1-RGP6_N_like N-te 99.7 5.3E-16 1.1E-20 109.5 13.8 111 1-125 3-118 (120)
87 cd07249 MMCE Methylmalonyl-CoA 99.7 4.1E-16 9E-21 111.2 13.4 118 1-123 1-128 (128)
88 cd07256 HPCD_C_class_II C-term 99.7 8.1E-16 1.8E-20 114.1 15.3 115 1-124 4-123 (161)
89 cd08361 PpCmtC_N N-terminal do 99.7 3.8E-16 8.3E-21 110.9 13.0 109 1-125 7-120 (124)
90 cd07255 Glo_EDI_BRP_like_12 Th 99.7 6.1E-16 1.3E-20 110.0 14.1 116 130-256 2-121 (125)
91 cd07242 Glo_EDI_BRP_like_6 Thi 99.7 8.7E-16 1.9E-20 109.7 14.9 116 130-253 1-127 (128)
92 cd07242 Glo_EDI_BRP_like_6 Thi 99.7 1.5E-15 3.2E-20 108.5 15.9 116 1-124 2-128 (128)
93 cd08346 PcpA_N_like N-terminal 99.7 6.8E-16 1.5E-20 109.7 14.1 119 1-122 2-126 (126)
94 cd08364 FosX FosX, a fosfomyci 99.7 5.2E-16 1.1E-20 111.2 13.5 117 129-254 3-122 (131)
95 cd07258 PpCmtC_C C-terminal do 99.7 8.4E-16 1.8E-20 111.2 14.6 112 2-125 1-115 (141)
96 cd08351 ChaP_like ChaP, an enz 99.7 5.1E-16 1.1E-20 110.1 13.1 111 130-255 4-122 (123)
97 cd07266 HPCD_N_class_II N-term 99.7 5.7E-16 1.2E-20 109.5 13.3 111 1-124 5-118 (121)
98 cd08364 FosX FosX, a fosfomyci 99.7 1.2E-15 2.6E-20 109.4 15.0 115 1-124 5-122 (131)
99 cd08359 Glo_EDI_BRP_like_22 Th 99.7 8.9E-16 1.9E-20 108.2 14.1 111 3-123 4-119 (119)
100 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 1.3E-15 2.9E-20 108.0 14.8 115 1-123 4-124 (125)
101 cd09013 BphC-JF8_N_like N-term 99.7 1.1E-15 2.5E-20 108.0 14.1 109 1-124 7-118 (121)
102 PF12681 Glyoxalase_2: Glyoxal 99.7 4.3E-16 9.4E-21 107.8 11.6 108 136-252 1-108 (108)
103 cd08355 Glo_EDI_BRP_like_14 Th 99.7 1.6E-15 3.5E-20 107.3 14.8 117 4-123 3-121 (122)
104 cd08351 ChaP_like ChaP, an enz 99.7 1.4E-15 3.1E-20 107.8 14.4 109 1-124 5-121 (123)
105 cd07240 ED_TypeI_classII_N N-t 99.7 2.1E-15 4.6E-20 105.8 14.7 110 1-125 3-115 (117)
106 PF12681 Glyoxalase_2: Glyoxal 99.7 1.3E-15 2.8E-20 105.4 13.4 108 6-122 1-108 (108)
107 cd08348 BphC2-C3-RGP6_C_like T 99.7 2E-15 4.3E-20 108.7 14.7 121 130-258 1-124 (134)
108 cd08348 BphC2-C3-RGP6_C_like T 99.7 4E-15 8.7E-20 107.1 16.0 118 1-126 2-122 (134)
109 cd07238 Glo_EDI_BRP_like_5 Thi 99.7 1.6E-15 3.4E-20 105.7 13.3 108 134-254 4-111 (112)
110 cd07240 ED_TypeI_classII_N N-t 99.7 1.6E-15 3.4E-20 106.5 13.3 112 130-256 2-116 (117)
111 cd08345 Fosfomycin_RP Fosfomyc 99.7 1.7E-15 3.6E-20 105.7 13.1 109 3-124 1-111 (113)
112 cd07262 Glo_EDI_BRP_like_19 Th 99.7 1.7E-15 3.7E-20 107.4 13.3 114 131-252 1-122 (123)
113 cd08362 BphC5-RrK37_N_like N-t 99.7 1.5E-15 3.2E-20 107.2 12.8 112 129-255 2-118 (120)
114 PRK06724 hypothetical protein; 99.7 3E-15 6.6E-20 106.4 14.3 108 1-124 8-123 (128)
115 COG3324 Predicted enzyme relat 99.7 2.4E-15 5.1E-20 104.0 13.0 121 127-255 6-126 (127)
116 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 6.7E-15 1.4E-19 104.0 15.8 115 4-123 5-121 (122)
117 cd08349 BLMA_like Bleomycin bi 99.7 2.7E-15 5.8E-20 104.4 13.3 109 135-253 3-112 (112)
118 cd07262 Glo_EDI_BRP_like_19 Th 99.7 4.7E-15 1E-19 105.1 14.5 114 1-122 1-122 (123)
119 cd07267 THT_Oxygenase_N N-term 99.7 4E-15 8.7E-20 103.8 13.7 107 1-124 4-110 (113)
120 cd08354 Glo_EDI_BRP_like_13 Th 99.7 3.1E-15 6.6E-20 105.8 12.9 114 131-254 1-122 (122)
121 cd07261 Glo_EDI_BRP_like_11 Th 99.7 3E-15 6.4E-20 104.7 12.6 108 134-252 2-113 (114)
122 cd08354 Glo_EDI_BRP_like_13 Th 99.7 6.6E-15 1.4E-19 104.1 14.2 113 1-123 1-121 (122)
123 cd07267 THT_Oxygenase_N N-term 99.7 5E-15 1.1E-19 103.4 13.3 109 130-255 3-111 (113)
124 cd07244 FosA FosA, a Fosfomyci 99.7 5.2E-15 1.1E-19 104.6 13.5 108 1-125 2-111 (121)
125 cd07235 MRD Mitomycin C resist 99.7 2.7E-15 5.9E-20 106.1 11.9 113 131-252 1-121 (122)
126 cd07238 Glo_EDI_BRP_like_5 Thi 99.7 1.1E-14 2.4E-19 101.4 14.9 109 3-124 3-111 (112)
127 cd07244 FosA FosA, a Fosfomyci 99.7 4.3E-15 9.3E-20 105.0 12.7 109 130-255 1-111 (121)
128 cd08362 BphC5-RrK37_N_like N-t 99.7 7.6E-15 1.6E-19 103.5 14.0 111 1-125 4-118 (120)
129 cd08350 BLMT_like BLMT, a bleo 99.6 5.7E-15 1.2E-19 104.2 12.8 107 134-254 6-119 (120)
130 cd08345 Fosfomycin_RP Fosfomyc 99.6 4.2E-15 9.2E-20 103.7 11.7 108 133-253 1-110 (113)
131 cd07254 Glo_EDI_BRP_like_20 Th 99.6 7.3E-15 1.6E-19 103.6 13.1 112 132-255 3-118 (120)
132 cd09012 Glo_EDI_BRP_like_24 Th 99.6 4.5E-15 9.8E-20 105.4 12.0 112 132-253 2-123 (124)
133 cd07254 Glo_EDI_BRP_like_20 Th 99.6 1.6E-14 3.4E-19 102.0 14.5 112 2-125 3-118 (120)
134 cd07235 MRD Mitomycin C resist 99.6 7.4E-15 1.6E-19 103.9 12.7 113 1-122 1-121 (122)
135 cd08357 Glo_EDI_BRP_like_18 Th 99.6 9.3E-15 2E-19 103.8 12.8 113 3-123 2-124 (125)
136 cd08357 Glo_EDI_BRP_like_18 Th 99.6 8.8E-15 1.9E-19 103.9 12.0 113 133-253 2-124 (125)
137 PF13669 Glyoxalase_4: Glyoxal 99.6 7.4E-15 1.6E-19 101.7 10.8 95 2-98 1-97 (109)
138 cd06587 Glo_EDI_BRP_like This 99.6 1.5E-14 3.2E-19 100.0 12.2 112 133-251 1-112 (112)
139 TIGR03211 catechol_2_3 catecho 99.6 1.6E-14 3.5E-19 118.4 14.4 113 1-122 146-263 (303)
140 cd08344 MhqB_like_N N-terminal 99.6 2.1E-14 4.5E-19 100.0 12.5 108 130-254 2-109 (112)
141 cd08344 MhqB_like_N N-terminal 99.6 2.9E-14 6.2E-19 99.3 13.2 106 1-125 3-110 (112)
142 cd07261 Glo_EDI_BRP_like_11 Th 99.6 3.4E-14 7.3E-19 99.3 13.5 108 4-122 2-113 (114)
143 cd06587 Glo_EDI_BRP_like This 99.6 5.2E-14 1.1E-18 97.2 14.0 112 3-121 1-112 (112)
144 cd08349 BLMA_like Bleomycin bi 99.6 4.5E-14 9.7E-19 98.2 13.5 109 5-123 3-112 (112)
145 COG3324 Predicted enzyme relat 99.6 6.7E-14 1.5E-18 96.8 13.9 117 1-125 10-126 (127)
146 cd08350 BLMT_like BLMT, a bleo 99.6 7.3E-14 1.6E-18 98.5 13.8 108 3-124 5-119 (120)
147 KOG2944 Glyoxalase [Carbohydra 99.6 1E-14 2.2E-19 102.2 8.7 72 180-254 87-168 (170)
148 cd09012 Glo_EDI_BRP_like_24 Th 99.6 5.5E-14 1.2E-18 99.8 12.8 113 1-123 1-123 (124)
149 TIGR02295 HpaD 3,4-dihydroxyph 99.6 7.7E-14 1.7E-18 113.9 15.3 115 1-124 137-256 (294)
150 TIGR03213 23dbph12diox 2,3-dih 99.6 8.1E-14 1.8E-18 113.2 15.2 114 1-123 143-262 (286)
151 cd08356 Glo_EDI_BRP_like_17 Th 99.6 4.3E-14 9.3E-19 98.6 11.7 104 134-253 5-113 (113)
152 KOG2943 Predicted glyoxalase [ 99.6 3.4E-14 7.5E-19 106.1 10.0 121 127-256 14-145 (299)
153 cd07251 Glo_EDI_BRP_like_10 Th 99.5 1.4E-13 2.9E-18 97.2 12.1 110 134-253 2-120 (121)
154 PF13669 Glyoxalase_4: Glyoxal 99.5 6.3E-14 1.4E-18 97.1 9.4 95 132-228 1-97 (109)
155 cd08356 Glo_EDI_BRP_like_17 Th 99.5 2.9E-13 6.2E-18 94.4 12.5 104 4-123 5-113 (113)
156 cd07251 Glo_EDI_BRP_like_10 Th 99.5 2.8E-13 6E-18 95.5 12.1 110 4-123 2-120 (121)
157 COG2514 Predicted ring-cleavag 99.5 3.4E-13 7.3E-18 103.7 12.3 119 126-256 6-128 (265)
158 KOG2944 Glyoxalase [Carbohydra 99.5 2.2E-12 4.7E-17 90.6 11.9 117 1-124 23-168 (170)
159 cd07250 HPPD_C_like C-terminal 99.4 1.7E-12 3.6E-17 98.8 10.0 98 129-228 2-112 (191)
160 cd07250 HPPD_C_like C-terminal 99.4 6.5E-12 1.4E-16 95.6 10.9 98 1-100 4-114 (191)
161 COG3565 Predicted dioxygenase 99.3 5.1E-11 1.1E-15 78.9 10.2 116 2-125 6-130 (138)
162 COG2764 PhnB Uncharacterized p 99.3 4.2E-10 9.2E-15 79.4 15.0 118 4-126 4-133 (136)
163 COG3565 Predicted dioxygenase 99.3 5.6E-11 1.2E-15 78.7 9.4 117 130-254 4-129 (138)
164 cd06588 PhnB_like Escherichia 99.2 2.3E-10 4.9E-15 81.6 12.4 112 134-252 3-128 (128)
165 COG2764 PhnB Uncharacterized p 99.2 7.9E-10 1.7E-14 78.0 13.1 118 134-256 4-133 (136)
166 PF13468 Glyoxalase_3: Glyoxal 99.2 1.7E-10 3.8E-15 86.7 10.5 147 1-152 1-175 (175)
167 COG3607 Predicted lactoylgluta 99.2 2.4E-10 5.2E-15 77.2 9.6 113 131-253 4-126 (133)
168 cd06588 PhnB_like Escherichia 99.2 1.8E-09 3.9E-14 76.9 14.3 111 4-121 3-127 (128)
169 TIGR01263 4HPPD 4-hydroxypheny 99.2 1.2E-09 2.7E-14 91.2 14.5 123 130-257 2-130 (353)
170 COG0346 GloA Lactoylglutathion 99.0 1.3E-09 2.9E-14 77.5 7.6 121 130-253 2-138 (138)
171 COG3607 Predicted lactoylgluta 99.0 7E-09 1.5E-13 70.2 8.7 114 3-126 6-129 (133)
172 PF14506 CppA_N: CppA N-termin 99.0 8E-08 1.7E-12 64.8 13.6 114 2-125 2-115 (125)
173 COG0346 GloA Lactoylglutathion 99.0 2.3E-09 5E-14 76.3 6.9 119 1-122 3-137 (138)
174 PLN02875 4-hydroxyphenylpyruva 98.9 6.1E-09 1.3E-13 86.8 9.6 96 1-98 181-295 (398)
175 KOG0638 4-hydroxyphenylpyruvat 98.8 1E-08 2.3E-13 80.3 6.9 130 129-260 16-154 (381)
176 PRK01037 trmD tRNA (guanine-N( 98.8 4E-08 8.6E-13 79.3 9.5 104 130-253 247-353 (357)
177 PRK01037 trmD tRNA (guanine-N( 98.8 5.7E-08 1.2E-12 78.4 10.1 103 2-124 249-354 (357)
178 PRK10148 hypothetical protein; 98.7 3.6E-06 7.8E-11 61.2 15.5 116 5-128 6-145 (147)
179 COG3185 4-hydroxyphenylpyruvat 98.5 2.3E-07 5E-12 74.3 6.7 100 1-100 168-276 (363)
180 PRK10148 hypothetical protein; 98.5 1E-05 2.2E-10 58.8 13.7 115 134-256 5-143 (147)
181 PF14696 Glyoxalase_5: Hydroxy 98.5 6.7E-07 1.4E-11 63.6 6.9 118 1-127 10-129 (139)
182 PF14506 CppA_N: CppA N-termin 98.5 8.3E-06 1.8E-10 55.2 11.5 112 133-256 3-116 (125)
183 PF14696 Glyoxalase_5: Hydroxy 98.4 6.2E-06 1.3E-10 58.7 11.1 118 129-257 8-129 (139)
184 PF13468 Glyoxalase_3: Glyoxal 98.2 7.3E-06 1.6E-10 61.6 7.5 89 131-223 1-101 (175)
185 PF14507 CppA_C: CppA C-termin 97.6 0.00026 5.6E-09 47.0 6.3 90 131-252 6-101 (101)
186 PF06983 3-dmu-9_3-mt: 3-demet 97.0 0.056 1.2E-06 37.5 12.5 96 9-122 11-116 (116)
187 PF06983 3-dmu-9_3-mt: 3-demet 96.3 0.06 1.3E-06 37.4 8.7 96 139-252 11-116 (116)
188 PF15067 FAM124: FAM124 family 96.1 0.12 2.7E-06 39.8 10.0 125 109-251 108-235 (236)
189 PF14507 CppA_C: CppA C-termin 95.9 0.032 7E-07 37.2 5.6 90 2-121 7-100 (101)
190 PF15067 FAM124: FAM124 family 95.7 0.14 3E-06 39.5 9.1 101 3-121 131-235 (236)
191 PRK11700 hypothetical protein; 91.4 2.2 4.7E-05 32.0 8.1 75 1-79 40-120 (187)
192 cd07268 Glo_EDI_BRP_like_4 Thi 88.6 5.3 0.00011 28.7 8.0 75 1-79 2-82 (149)
193 PF06185 YecM: YecM protein; 86.7 6.8 0.00015 29.5 7.9 83 1-88 35-125 (185)
194 PF13670 PepSY_2: Peptidase pr 83.3 3.9 8.5E-05 26.3 4.9 46 209-256 30-75 (83)
195 PF13670 PepSY_2: Peptidase pr 82.1 5.9 0.00013 25.4 5.4 44 79-124 30-73 (83)
196 COG4747 ACT domain-containing 79.0 12 0.00026 25.8 6.0 113 80-226 17-135 (142)
197 COG3865 Uncharacterized protei 76.0 26 0.00057 25.1 8.2 34 209-253 90-123 (151)
198 cd04882 ACT_Bt0572_2 C-termina 73.0 8.5 0.00019 22.8 4.0 28 198-225 38-65 (65)
199 PF06185 YecM: YecM protein; 70.0 45 0.00098 25.2 8.2 78 130-208 34-114 (185)
200 TIGR00318 cyaB adenylyl cyclas 69.6 44 0.00095 24.9 9.4 80 73-159 6-104 (174)
201 cd04883 ACT_AcuB C-terminal AC 63.0 17 0.00038 22.1 4.0 29 199-227 41-71 (72)
202 PRK11700 hypothetical protein; 62.8 65 0.0014 24.4 8.3 79 129-208 38-119 (187)
203 COG3102 Uncharacterized protei 61.1 64 0.0014 23.9 6.9 87 1-90 40-132 (185)
204 cd07268 Glo_EDI_BRP_like_4 Thi 56.9 73 0.0016 23.1 8.2 77 131-208 2-81 (149)
205 PF07063 DUF1338: Domain of un 53.3 37 0.00081 27.9 5.3 30 66-95 181-216 (302)
206 KOG4657 Uncharacterized conser 53.1 54 0.0012 25.5 5.6 35 10-47 146-180 (246)
207 PF09142 TruB_C: tRNA Pseudour 50.5 34 0.00074 20.1 3.5 45 206-256 2-46 (56)
208 PF02208 Sorb: Sorbin homologo 48.0 9 0.00019 21.3 0.7 24 129-152 10-33 (47)
209 cd04895 ACT_ACR_1 ACT domain-c 46.1 38 0.00082 21.2 3.4 40 210-249 15-55 (72)
210 cd04906 ACT_ThrD-I_1 First of 45.0 48 0.001 21.2 3.9 29 198-226 39-71 (85)
211 PF13200 DUF4015: Putative gly 44.3 30 0.00065 28.7 3.5 28 207-244 60-87 (316)
212 PF07063 DUF1338: Domain of un 42.6 54 0.0012 27.0 4.7 30 196-225 181-216 (302)
213 COG3865 Uncharacterized protei 41.1 1.4E+02 0.003 21.6 11.4 99 9-123 14-123 (151)
214 COG4747 ACT domain-containing 39.5 33 0.00072 23.7 2.5 86 3-96 44-135 (142)
215 COG3603 Uncharacterized conser 39.3 36 0.00077 23.6 2.6 27 199-225 101-127 (128)
216 cd04908 ACT_Bt0572_1 N-termina 38.0 65 0.0014 19.2 3.6 24 202-225 42-65 (66)
217 PF08445 FR47: FR47-like prote 37.9 91 0.002 20.0 4.4 22 7-29 61-82 (86)
218 PF10649 DUF2478: Protein of u 34.0 1.4E+02 0.003 22.0 5.2 46 210-255 16-65 (159)
219 PRK03467 hypothetical protein; 33.4 1.3E+02 0.0028 21.8 4.9 47 209-256 6-53 (144)
220 PF11080 DUF2622: Protein of u 32.7 64 0.0014 21.5 3.0 29 208-251 21-49 (96)
221 KOG4657 Uncharacterized conser 31.4 1.1E+02 0.0023 24.0 4.3 23 138-160 144-166 (246)
222 COG3603 Uncharacterized conser 30.0 62 0.0013 22.4 2.6 23 72-94 104-126 (128)
223 PF07494 Reg_prop: Two compone 28.5 73 0.0016 14.8 2.1 14 237-250 7-20 (24)
224 COG3769 Predicted hydrolase (H 27.4 3.1E+02 0.0068 21.7 6.4 95 109-220 9-116 (274)
225 PF11633 SUD-M: Single-strande 26.7 1.7E+02 0.0037 20.9 4.3 48 199-259 34-81 (142)
226 cd04897 ACT_ACR_3 ACT domain-c 26.4 1.2E+02 0.0026 19.1 3.4 40 210-249 15-55 (75)
227 cd04885 ACT_ThrD-I Tandem C-te 25.2 1.6E+02 0.0034 17.7 3.8 26 69-94 38-66 (68)
228 PF08379 Bact_transglu_N: Bact 24.7 1.1E+02 0.0023 19.4 3.0 26 237-262 48-73 (82)
229 cd04909 ACT_PDH-BS C-terminal 24.4 89 0.0019 18.6 2.5 24 201-224 45-69 (69)
230 COG3254 Uncharacterized conser 23.6 2.3E+02 0.005 19.2 4.4 34 211-256 27-60 (105)
231 KOG0178 20S proteasome, regula 23.5 74 0.0016 24.5 2.3 13 236-248 144-156 (249)
232 cd04886 ACT_ThrD-II-like C-ter 23.3 1.7E+02 0.0036 17.1 4.3 27 199-225 43-72 (73)
233 COG1225 Bcp Peroxiredoxin [Pos 23.3 3.1E+02 0.0067 20.2 5.9 57 199-255 64-139 (157)
234 PRK12332 tsf elongation factor 23.0 1.5E+02 0.0032 22.8 3.9 45 208-252 31-75 (198)
235 PF13176 TPR_7: Tetratricopept 22.9 67 0.0015 16.4 1.5 17 8-24 12-28 (36)
236 COG3349 Uncharacterized conser 22.6 1.4E+02 0.003 26.5 4.1 36 214-251 16-52 (485)
237 KOG2792 Putative cytochrome C 21.8 1E+02 0.0022 24.7 2.9 52 208-259 210-265 (280)
238 PF14883 GHL13: Hypothetical g 21.7 1.3E+02 0.0027 24.7 3.4 18 208-225 17-34 (294)
239 KOG3235 Subunit of the major N 21.6 3.5E+02 0.0075 20.1 6.3 29 131-159 106-135 (193)
240 PHA02754 hypothetical protein; 20.4 2E+02 0.0044 17.0 4.0 43 212-256 22-64 (67)
241 PRK06704 RNA polymerase factor 20.2 79 0.0017 24.8 2.0 42 204-250 183-224 (228)
242 PF11823 DUF3343: Protein of u 20.2 2.2E+02 0.0047 17.5 3.7 23 73-95 45-67 (73)
No 1
>PLN02300 lactoylglutathione lyase
Probab=100.00 E-value=4.2e-44 Score=289.77 Aligned_cols=262 Identities=92% Similarity=1.517 Sum_probs=212.4
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCCH
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDV 80 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d~ 80 (262)
|+||+|.|+|++++++||+++|||++..+...+...+...++..++...++.+++....+......+.++.|++|.|+|+
T Consensus 25 l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hia~~v~dv 104 (286)
T PLN02300 25 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHFGIAVEDV 104 (286)
T ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEEEEEeCCH
Confidence 58999999999999999999999999876544444555677766544455666776543333344566889999999999
Q ss_pred HHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCCCCCCceeEEeeecChhhhHHHHHHhcCCeeeeec
Q 024790 81 AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKR 160 (262)
Q Consensus 81 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~~~~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~ 160 (262)
++++++++++|+++..+|...+.++.+.+||.||+|+.|||++..+.+.++.|+.|.|+|++++.+||+++|||++....
T Consensus 105 d~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~ 184 (286)
T PLN02300 105 AKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKR 184 (286)
T ss_pred HHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCcceeEEEEeCCHHHHHHHHHhccCCEEEeee
Confidence 99999999999999887766665556778999999999999999989999999999999999999999999999997654
Q ss_pred cCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecCHHHHHHHHHHhCCeeecCCccCCCCcceEEE
Q 024790 161 DNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITA 240 (262)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 240 (262)
..++..+...++...+......+++....+...+..+++.+|++|.|+|+++++++++++|+++..+|...++..++.++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~ 264 (286)
T PLN02300 185 DNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITA 264 (286)
T ss_pred cccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEE
Confidence 44444566666654333334456665544333345578999999999999999999999999999999888865457899
Q ss_pred EeCCCCcEEEEEeccccccccC
Q 024790 241 CLDPDGWKTVFVDNVDFLKELE 262 (262)
Q Consensus 241 ~~DP~G~~ie~~~~~~~~~~~~ 262 (262)
++||+|+.|+|+++.++.|+||
T Consensus 265 ~~DPdG~~i~~~~~~~~~~~~~ 286 (286)
T PLN02300 265 CLDPDGWKTVFVDNIDFLKELE 286 (286)
T ss_pred EECCCCCEEEEEccchhhhhcC
Confidence 9999999999999999999997
No 2
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=100.00 E-value=3.5e-33 Score=228.55 Aligned_cols=232 Identities=20% Similarity=0.240 Sum_probs=164.7
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeC--
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD-- 78 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~-- 78 (262)
|+||.|.|+|++++++||+++|||++..+.. ..+++.......+..+.+... ...++.|++|.|+
T Consensus 5 i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~-------~~~g~~hiaf~v~~~ 71 (303)
T TIGR03211 5 LGHVELRVLDLEESLKHYTDVLGLEETGRDG------QRVYLKAWDEWDHYSVILTEA-------DTAGLDHMAFKVESE 71 (303)
T ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeecC------ceEEEEeccccccceEeeccC-------CCCceeEEEEEeCCH
Confidence 5899999999999999999999999876542 123443221111223333221 1346889999998
Q ss_pred -CHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCCC---------------------CCCceeEEe
Q 024790 79 -DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT---------------------PEPLCQVML 136 (262)
Q Consensus 79 -d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~~---------------------~~~~~~v~l 136 (262)
|+++++++|+++|+++...+.....+.++.++|.||+|+.|||++.... ..+++||+|
T Consensus 72 ~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Hi~l 151 (303)
T TIGR03211 72 ADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDHCLL 151 (303)
T ss_pred HHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEEEeE
Confidence 6889999999999998755432222345779999999999999974421 236899999
Q ss_pred eecChhhhHHHHHHhcCCeeeeeccCcCccc-eeeeeccCCCCcceEEEEeeecCCcccccCCc-eeEEEEEecC---HH
Q 024790 137 RVGDLDRSINFYEQAFGMELLRKRDNPEYKY-TIAMMGYGPEDKNVVLELTYNYGVTDYDKGNA-YAQIAIGTDD---VY 211 (262)
Q Consensus 137 ~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~i~~~v~d---l~ 211 (262)
.|+|++++++||+++|||++......+++.. ...++.... ....+.+.. ..+++ ..|++|.|+| ++
T Consensus 152 ~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~g~~~Hiaf~v~~~~~v~ 222 (303)
T TIGR03211 152 YGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSN--KAHDIAFVG-------DPEPGKLHHVSFFLDSWEDVL 222 (303)
T ss_pred EeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCC--CCcccceec-------CCCCCceEEEEEEcCCHHHHH
Confidence 9999999999999999999876543333221 233444321 222232221 11234 8999999986 55
Q ss_pred HHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEec
Q 024790 212 KTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 254 (262)
Q Consensus 212 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 254 (262)
++.++|+++|+++..+|..++.+.++++|++||+||.|||...
T Consensus 223 ~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 265 (303)
T TIGR03211 223 KAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFGG 265 (303)
T ss_pred HHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEecC
Confidence 5778999999999888876654445789999999999999844
No 3
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=100.00 E-value=1.2e-32 Score=224.62 Aligned_cols=231 Identities=24% Similarity=0.313 Sum_probs=165.7
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeC--
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD-- 78 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~-- 78 (262)
|+||.|.|+|++++++||+++|||++..+.. ..+++..........+.+... ...++.|++|.|+
T Consensus 5 i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~~-------~~~~~~hiaf~v~~~ 71 (294)
T TIGR02295 5 TGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTKA-------PSAALSYIGFRVSKE 71 (294)
T ss_pred eeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeeeC-------CCcCccEEEEEeCCH
Confidence 5899999999999999999999999876532 234443222111222333221 1246789999997
Q ss_pred -CHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCC---------------CCCCceeEEeeecChh
Q 024790 79 -DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---------------TPEPLCQVMLRVGDLD 142 (262)
Q Consensus 79 -d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~---------------~~~~~~~v~l~v~d~~ 142 (262)
|+++++++|+++|+++...+. . +..+.++|.||+||.|||+.... .+.+++|++|.|+|++
T Consensus 72 ~dl~~~~~~l~~~Gv~v~~~~~--~-~~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~i~Hv~l~v~dl~ 148 (294)
T TIGR02295 72 EDLDKAADFFQKLGHPVRLVRD--G-GQPEALRVEDPFGYPIEFYFEMEKVERLLRRYHRHRGVSPVRLDHFNVFVPDVQ 148 (294)
T ss_pred HHHHHHHHHHHhcCCcEEeecC--C-CCceEEEEECCCCCEEEEEEchhhcccccccccccCCccceeeeeEEEEeCCHH
Confidence 689999999999998875432 2 24588999999999999996321 1247899999999999
Q ss_pred hhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecC---HHHHHHHHHH
Q 024790 143 RSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD---VYKTAEAIKL 219 (262)
Q Consensus 143 ~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~d---l~~~~~~l~~ 219 (262)
++++||+++|||++......+.+.....++... ..++.+.+.. ..++++.|++|.|+| ++++.++|++
T Consensus 149 ~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~Hiaf~v~d~~~v~~~~~~l~~ 219 (294)
T TIGR02295 149 RALRFYKEELGFRVTEYTEDDEGNLAAAWLHRK--GGVHDIALTN-------GNGPRLHHIAYWVHDPLNIIKACDILAS 219 (294)
T ss_pred HHHHHHHHhcCCEEEEEeccCCCcEEEEEEecC--CCcCceEeec-------CCCCceeeEEEEcCCHHHHHHHHHHHHh
Confidence 999999999999987654333332223444322 1233344321 124689999999998 5556899999
Q ss_pred hCCe--eecCCccCCCCcceEEEEeCCCCcEEEEEeccc
Q 024790 220 FGGK--VTREPGPLPGINTKITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 220 ~g~~--~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 256 (262)
+|++ +...|..+..+..+++|++||+||.|||+..+.
T Consensus 220 ~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 258 (294)
T TIGR02295 220 AGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGDY 258 (294)
T ss_pred CCCCcccccCCccCCCCcceEEEEECCCCCEEEEEeccc
Confidence 9998 666676655544578999999999999988654
No 4
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=100.00 E-value=4.7e-32 Score=219.99 Aligned_cols=233 Identities=18% Similarity=0.224 Sum_probs=167.3
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCC-
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD- 79 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d- 79 (262)
|+||+|.|+|+++|++||+++|||++..+.. . ...|+..+... ..+.+.... ..++.+++|.|+|
T Consensus 4 i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~---~~~~~~~~~~~--~~~~l~~~~-------~~~~~~~~f~V~~~ 69 (286)
T TIGR03213 4 LGYLGIGVSDVDAWREFATEVLGMMVASEGE--N---DALYLRLDSRA--HRIAVHPGE-------SDDLAYAGWEVADE 69 (286)
T ss_pred eeEEEEEeCCHHHHHHHHHhccCcccccCCC--C---ceEEEEcCCCc--eEEEEEECC-------cCCeeeEeeeeCCH
Confidence 5899999999999999999999998764321 1 23355554322 223333221 1356789999998
Q ss_pred --HHHHHHHHHHcCCeeecCCcc--cCCCCeEEEEEECCCCCEEEEEEcCC----C--------------CCCceeEEee
Q 024790 80 --VAKTVELIKAKGGKVTREPGP--VKGGNTVIAFIEDPDGYKFELLERGP----T--------------PEPLCQVMLR 137 (262)
Q Consensus 80 --~~~~~~~l~~~G~~~~~~~~~--~~~~~~~~~~~~DP~G~~iel~~~~~----~--------------~~~~~~v~l~ 137 (262)
++++.++|+++|+++...+.. ...+....++|.|||||.+|++.... . +.+++||.|.
T Consensus 70 ~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Hv~l~ 149 (286)
T TIGR03213 70 AGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGFVTGDQGLGHIVLR 149 (286)
T ss_pred HHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCccccCCccccEEEEE
Confidence 889999999999988755431 12245678999999999999995321 0 2378999999
Q ss_pred ecChhhhHHHHHHhcCCeeeeeccC--cCc-cceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecCHHH--
Q 024790 138 VGDLDRSINFYEQAFGMELLRKRDN--PEY-KYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYK-- 212 (262)
Q Consensus 138 v~d~~~~~~FY~~~lG~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~dl~~-- 212 (262)
|+|++++.+||+++|||++...... +++ .....++...+ .++.+.+.. .+..+++.|++|.|+|+++
T Consensus 150 v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~--~~~~~~l~~------~~~~~~~~Hiaf~v~d~~~v~ 221 (286)
T TIGR03213 150 VPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNE--RHHSLAFAA------GPSEKRLNHLMLEVDTLDDVG 221 (286)
T ss_pred cCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECC--CcceEEEec------CCCCCceEEEEEEcCCHHHHH
Confidence 9999999999999999998765322 111 11234554432 344455432 1234689999999987766
Q ss_pred -HHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccc
Q 024790 213 -TAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 213 -~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 256 (262)
+.++|+++|+ ....|.+++.+..+++|++||+|+.||+.....
T Consensus 222 ~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~~~ 265 (286)
T TIGR03213 222 LALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWGAR 265 (286)
T ss_pred HHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecCcE
Confidence 7999999999 566666666555688999999999999987543
No 5
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-32 Score=200.37 Aligned_cols=246 Identities=53% Similarity=0.880 Sum_probs=204.7
Q ss_pred ceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCC-----------CcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCc
Q 024790 2 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPE-----------EKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGF 70 (262)
Q Consensus 2 ~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 70 (262)
-|+.+.|.|..+++.||+++|||++...++.+. +.+..+++++|+...||++++..+++...+..|+++
T Consensus 19 LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~YelGndf 98 (299)
T KOG2943|consen 19 LHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYELGNDF 98 (299)
T ss_pred eeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceeccCCc
Confidence 499999999999999999999999987766655 577888999999999999999999999999999999
Q ss_pred eeEEEEeCCHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCCCCCCceeEEeeecChhhhHHHHHH
Q 024790 71 GHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQ 150 (262)
Q Consensus 71 ~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~~~~~~~~v~l~v~d~~~~~~FY~~ 150 (262)
.||.+.++|+-...+.+...|.+ .++...+++.||||..+++++..+.+..+..|.|+|.|+++++.||.+
T Consensus 99 g~i~I~s~dv~~~ve~v~~p~~~---------~~g~~~~~v~dPdGykF~l~~~~p~s~pv~~V~l~VgdL~ks~kyw~~ 169 (299)
T KOG2943|consen 99 GGITIASDDVFSKVEKVNAPGGK---------GSGCGIAFVKDPDGYKFYLIDRGPQSDPVLQVMLNVGDLQKSIKYWEK 169 (299)
T ss_pred ccEEEeHHHHHHHHHHhcCcCCc---------ccceEEEEEECCCCcEEEEeccCCCCCCeEEEEEEehhHHHHHHHHHH
Confidence 99999999988877777665532 135566888999999999999999999999999999999999999999
Q ss_pred hcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecCHHHHHHHHHHhCCeeecCCcc
Q 024790 151 AFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGP 230 (262)
Q Consensus 151 ~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~dl~~~~~~l~~~g~~~~~~~~~ 230 (262)
.|||++.+. +..+...+++++. .+..++|...++......+.+...+++..+++..+-+.++..+.++..+-.+
T Consensus 170 ~lgM~ilek----eek~t~~~mgYgd--~q~~LElt~~~~~id~~kg~griafaip~d~~~~l~e~iK~~n~~i~~~ltt 243 (299)
T KOG2943|consen 170 LLGMKILEK----EEKYTRARMGYGD--EQCVLELTYNYDVIDRAKGFGRIAFAIPTDDLPKLQEAIKSANGTILTPLTT 243 (299)
T ss_pred HhCcchhhh----hhhhhhhhhccCC--cceEEEEEeccCcccccccceeEEEeccccccccHHHHHHHhccccccceee
Confidence 999999875 2345667788765 4699999988776555555565666666789999999999998777665443
Q ss_pred C--CCCc-ceEEEEeCCCCcEEEEEeccccccccC
Q 024790 231 L--PGIN-TKITACLDPDGWKTVFVDNVDFLKELE 262 (262)
Q Consensus 231 ~--~~~~-~~~~~~~DP~G~~ie~~~~~~~~~~~~ 262 (262)
. |++. ..++.+.||||+.|+|+.++.+++.++
T Consensus 244 l~tPgka~vqvvil~DPDgheicfVdde~F~~lsk 278 (299)
T KOG2943|consen 244 LDTPGKATVQVVILADPDGHEICFVDDEGFRKLSK 278 (299)
T ss_pred ccCCCcceeEEEEEECCCCceEEEeccHHHHHHhc
Confidence 3 3332 356788999999999999999988764
No 6
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.93 E-value=8.6e-24 Score=175.81 Aligned_cols=221 Identities=23% Similarity=0.338 Sum_probs=148.9
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCC------CCCCCCceeEE
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK------YDIGTGFGHFG 74 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~i~ 74 (262)
++||.|.|+|++++.+||++.|||++........+ .....+..+ . ..+++..+..... ...+.++.|++
T Consensus 3 i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~-~~~~~~~~G--~--~~l~L~~~~~~~s~~~~~~~~hg~gv~~ia 77 (353)
T TIGR01263 3 FDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHRE-KASHVLRQG--Q--INFVLTAPYSSDSPAADFAAKHGDGVKDVA 77 (353)
T ss_pred eEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCc-eeEEEEEeC--C--EEEEEecCCCCCchHHHHHHhCCCceEEEE
Confidence 58999999999999999999999999876321121 122233322 2 3455554322111 12578999999
Q ss_pred EEeCCHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCC---------------------C----CC
Q 024790 75 IAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---------------------T----PE 129 (262)
Q Consensus 75 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~---------------------~----~~ 129 (262)
|.|+|++++++++.++|+++..+|.....|......+..++|..+-|++... . -.
T Consensus 78 f~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (353)
T TIGR01263 78 FRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGYKGSFYPGFFESLLDAALHEPPPGVGLI 157 (353)
T ss_pred EEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCCCCCCCCCccccccccccccCCCCCCeE
Confidence 9999999999999999999987765431122233333444455554443210 0 12
Q ss_pred CceeEEeeec--ChhhhHHHHHHhcCCeeeeeccCcCc--cceeeeeccCCCCcceEEEEeeecCC---c------cccc
Q 024790 130 PLCQVMLRVG--DLDRSINFYEQAFGMELLRKRDNPEY--KYTIAMMGYGPEDKNVVLELTYNYGV---T------DYDK 196 (262)
Q Consensus 130 ~~~~v~l~v~--d~~~~~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~---~------~~~~ 196 (262)
+++||+++|+ |+++++.||+++|||++....+.... ......+. ...+...++|.+.... . ....
T Consensus 158 ~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~--~~~g~~~i~L~ep~~~~~~s~i~~fl~~~~ 235 (353)
T TIGR01263 158 AIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMA--SPDGKVKIPLNEPASGKDKSQIEEFLEFYN 235 (353)
T ss_pred EeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEE--CCCCcEEEEEeccCCCCCCCHHHHHHHHcC
Confidence 5999999999 99999999999999998765443221 11111122 1224577888763211 1 1224
Q ss_pred CCceeEEEEEecCHHHHHHHHHHhCCeeecCC
Q 024790 197 GNAYAQIAIGTDDVYKTAEAIKLFGGKVTREP 228 (262)
Q Consensus 197 ~~~~~~i~~~v~dl~~~~~~l~~~g~~~~~~~ 228 (262)
++|+.||||.|+|+++++++|+++|++++..|
T Consensus 236 g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 236 GAGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred CCCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 78999999999999999999999999999877
No 7
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.92 E-value=1.8e-23 Score=159.66 Aligned_cols=190 Identities=23% Similarity=0.341 Sum_probs=139.7
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCC-CCCCCCCCCceeEEEEeCC
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG-VDKYDIGTGFGHFGIAVDD 79 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~i~~~v~d 79 (262)
++.|.|.|+|++.+..||++++|+++..+.. ....+..+.. ..+.+.+... ..+.....|+.|++|.+++
T Consensus 11 v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg~---~LL~L~q~~~a~~~~~~~aGLyH~AfLlP~ 81 (265)
T COG2514 11 VGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGGT---PLLTLEQFPDARRPPPRAAGLYHTAFLLPT 81 (265)
T ss_pred EEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCCE---EEEEEEeCCCCCCCCccccceeeeeeecCC
Confidence 3578999999999999999999999998764 3455666543 2345544322 2333567799999999995
Q ss_pred ---HHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCCC-----------------------------
Q 024790 80 ---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT----------------------------- 127 (262)
Q Consensus 80 ---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~~----------------------------- 127 (262)
+.++..++.+.|..+.. ..+...+..+||.||+||.||++..++.
T Consensus 82 r~~L~~~l~hl~~~~~~l~G---a~DH~vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ld~~~ll~~~~~~ 158 (265)
T COG2514 82 REDLARVLNHLAEEGIPLVG---ASDHLVSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEPLDVEALLEEATKE 158 (265)
T ss_pred HHHHHHHHHHHHhcCCcccc---cCcchhheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccccCHHHHhhhcccc
Confidence 77888999999988752 3444578899999999999999966431
Q ss_pred -------CCCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccc---cC
Q 024790 128 -------PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYD---KG 197 (262)
Q Consensus 128 -------~~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~ 197 (262)
...|+||.|.|.|++++.+||.++|||++..+. + ...|++.+ +-++.+....+....... ..
T Consensus 159 ~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~--~----~A~F~a~G--~YHHHia~N~W~s~~~~~~~~~~ 230 (265)
T COG2514 159 PWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARG--P----SALFLASG--DYHHHLAANTWNSRGARPRNANA 230 (265)
T ss_pred ccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecC--C----cceEEecC--CcceeEEEeccccCCCCCCCCCC
Confidence 126899999999999999999999999998762 1 23566654 367777777654332211 23
Q ss_pred CceeEEEEEecCH
Q 024790 198 NAYAQIAIGTDDV 210 (262)
Q Consensus 198 ~~~~~i~~~v~dl 210 (262)
.|...+.+.+.+.
T Consensus 231 ~GLa~~~i~~~~~ 243 (265)
T COG2514 231 SGLAWLEIHTPDP 243 (265)
T ss_pred CCcceEEEEcCCc
Confidence 4777777777663
No 8
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.89 E-value=7e-21 Score=157.05 Aligned_cols=222 Identities=20% Similarity=0.286 Sum_probs=156.2
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCc--ceeeEeeecCCCceeEEEeeecCCC-----------------
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEK--YTNAFLGYGPEDSHFVIELTYNYGV----------------- 61 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~----------------- 61 (262)
++||.+.|.|..++..||+..|||+.+.......+. .....++ .....+ .+..+...
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r--~g~i~f--v~~~~~~~~~~~~~~~~~~~~~~~~ 76 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLR--SGDLVF--LFTAPYSPKIGAGDDDPASTAPHPS 76 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEE--eCCEEE--EEeCCCCCccccccccccccccccc
Confidence 689999999999999999999999998765432222 2222333 333333 33322101
Q ss_pred --CC------CCCCCCceeEEEEeCCHHHHHHHHHHcCCeeecCCcccCC----CCeEEEEEECCCCCEEEEEEcCC---
Q 024790 62 --DK------YDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKG----GNTVIAFIEDPDGYKFELLERGP--- 126 (262)
Q Consensus 62 --~~------~~~~~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~----~~~~~~~~~DP~G~~iel~~~~~--- 126 (262)
.. ..+|.++..|+|+|+|++++++++.++|+++..+|....+ |......+..++|..+-|++...
T Consensus 77 ~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~~~~ 156 (398)
T PLN02875 77 FSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKGFDG 156 (398)
T ss_pred cCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCCCCC
Confidence 00 0156899999999999999999999999998877765432 22455556677777777775321
Q ss_pred ------------C--------CCCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCc-----cceeeeeccCCCCcce
Q 024790 127 ------------T--------PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEY-----KYTIAMMGYGPEDKNV 181 (262)
Q Consensus 127 ------------~--------~~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 181 (262)
. -.+|+||+++|+++++++.||+++|||+.....+.++. +.....+. ++++..
T Consensus 157 ~~f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~--sp~g~v 234 (398)
T PLN02875 157 AKFLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLA--SNNEMV 234 (398)
T ss_pred CccCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEE--cCCCcE
Confidence 0 12699999999999999999999999988865443322 12333333 233557
Q ss_pred EEEEeeecCC----cc------cccCCceeEEEEEecCHHHHHHHHHHh----CCeeecCC
Q 024790 182 VLELTYNYGV----TD------YDKGNAYAQIAIGTDDVYKTAEAIKLF----GGKVTREP 228 (262)
Q Consensus 182 ~~~l~~~~~~----~~------~~~~~~~~~i~~~v~dl~~~~~~l~~~----g~~~~~~~ 228 (262)
.+.|.+.... .. ...|+|++||||.|+||.+++++|+++ |++++..|
T Consensus 235 ~ipLnEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 235 LLPLNEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred EEEeccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 8888875321 11 234689999999999999999999999 99999855
No 9
>PLN02367 lactoylglutathione lyase
Probab=99.88 E-value=3e-21 Score=147.41 Aligned_cols=128 Identities=32% Similarity=0.564 Sum_probs=105.0
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCC---------------CcceEEEEeeecCCcc-
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPE---------------DKNVVLELTYNYGVTD- 193 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~- 193 (262)
.+.|+.|.|+|++++++||+++|||++..+.+.++..+.+.++++... .....++|...++...
T Consensus 75 ~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~~ 154 (233)
T PLN02367 75 IMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTESD 154 (233)
T ss_pred EEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCcc
Confidence 689999999999999999999999999988888887888888865331 1245899987665431
Q ss_pred -----cccC----CceeEEEEEecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEecccccc
Q 024790 194 -----YDKG----NAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFLK 259 (262)
Q Consensus 194 -----~~~~----~~~~~i~~~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~~~~ 259 (262)
+..+ .|+.||+|.|+|+++++++|+++|+++...|....+ .++++++||||++|||+|.+...+
T Consensus 155 ~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~~~~ 227 (233)
T PLN02367 155 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKTIGT 227 (233)
T ss_pred ccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEecccccc
Confidence 2222 489999999999999999999999999987754333 478999999999999999887654
No 10
>PRK10291 glyoxalase I; Provisional
Probab=99.87 E-value=5e-21 Score=137.09 Aligned_cols=122 Identities=52% Similarity=0.949 Sum_probs=94.7
Q ss_pred EeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecCHHHHH
Q 024790 135 MLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTA 214 (262)
Q Consensus 135 ~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~dl~~~~ 214 (262)
+|.|+|++++++||+++|||++......++..+.+.++..++......+++....+..+...+.+..|++|.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 37899999999999999999987765555555566777654433345566654433333445568899999999999999
Q ss_pred HHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccc
Q 024790 215 EAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 215 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 256 (262)
++|+++|+++..++...+++..+++++.||||+.|||++.++
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 999999999998776666654567889999999999999775
No 11
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.86 E-value=1.8e-20 Score=137.66 Aligned_cols=134 Identities=48% Similarity=0.856 Sum_probs=100.5
Q ss_pred CCCCCCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEE
Q 024790 125 GPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIA 204 (262)
Q Consensus 125 ~~~~~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~ 204 (262)
.....++.|+.|.|+|++++.+||+++|||++......+...+...++..+.......+.+.......+...+.+..|++
T Consensus 12 ~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~ 91 (150)
T TIGR00068 12 KTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIA 91 (150)
T ss_pred ccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEE
Confidence 34567899999999999999999999999998765444443344455554332234455554433322333456889999
Q ss_pred EEecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccccc
Q 024790 205 IGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFL 258 (262)
Q Consensus 205 ~~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~~~ 258 (262)
|.|+|+++++++|.++|+++..+|...+++..+++|++||+|+.|||++...-.
T Consensus 92 f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 145 (150)
T TIGR00068 92 IGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTK 145 (150)
T ss_pred EecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchh
Confidence 999999999999999999998887666665557889999999999999977543
No 12
>PRK10291 glyoxalase I; Provisional
Probab=99.86 E-value=5e-20 Score=131.89 Aligned_cols=126 Identities=60% Similarity=1.059 Sum_probs=94.1
Q ss_pred EEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCCHHHHH
Q 024790 5 VYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTV 84 (262)
Q Consensus 5 ~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d~~~~~ 84 (262)
+|.|+|+++|++||+++|||++..+...+...+..+++..++......+++....+..+...+.++.|++|.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 47899999999999999999988765444445566676654433333455554333333345568899999999999999
Q ss_pred HHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCCCCCC
Q 024790 85 ELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEP 130 (262)
Q Consensus 85 ~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~~~~~ 130 (262)
++|+++|+++..++.+..++..+.++|.||||+.|||++....+.+
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~~~ 126 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAGRG 126 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccccccc
Confidence 9999999998876655555555678889999999999997754443
No 13
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.85 E-value=7.6e-20 Score=134.35 Aligned_cols=130 Identities=65% Similarity=1.106 Sum_probs=96.7
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCCH
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDV 80 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d~ 80 (262)
|+||.|.|+|++++.+||+++|||++..+...+...+..+++..+.......+++.......+...+.++.|++|.|+|+
T Consensus 18 i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f~v~dl 97 (150)
T TIGR00068 18 LLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAIGVDDV 97 (150)
T ss_pred EEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEEecCCH
Confidence 58999999999999999999999998766543333344556655443333445554332222333456888999999999
Q ss_pred HHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCCCCCC
Q 024790 81 AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEP 130 (262)
Q Consensus 81 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~~~~~ 130 (262)
++++++|.++|+++..++.+.+.+..+.+||.||+|+.|||++..+....
T Consensus 98 d~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~ 147 (150)
T TIGR00068 98 YKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTKDG 147 (150)
T ss_pred HHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchhhh
Confidence 99999999999998877755555556788899999999999988765443
No 14
>PLN02367 lactoylglutathione lyase
Probab=99.85 E-value=8.8e-20 Score=139.38 Aligned_cols=125 Identities=41% Similarity=0.731 Sum_probs=98.8
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCC---------------ceeEEEeeecCCCCC--
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPED---------------SHFVIELTYNYGVDK-- 63 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~~~~-- 63 (262)
++|++|.|+|++++++||+++|||++..+.+.+..++..+++..++.. ....+||.++.+...
T Consensus 76 ~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~~~ 155 (233)
T PLN02367 76 MQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTESDP 155 (233)
T ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCccc
Confidence 589999999999999999999999999988777777888888643310 123678876544321
Q ss_pred ----CCCC----CCceeEEEEeCCHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCCC
Q 024790 64 ----YDIG----TGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 127 (262)
Q Consensus 64 ----~~~~----~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~~ 127 (262)
+..+ .|+.||||.|+|+++++++|+++|+++..+|.... ..+.+++.||||+.|||++...-
T Consensus 156 ~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~--~~riaFIkDPDGn~IEL~e~~~~ 225 (233)
T PLN02367 156 DFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGK--MKGIAFIKDPDGYWIEIFDLKTI 225 (233)
T ss_pred cchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCC--ceEEEEEECCCCCEEEEEecccc
Confidence 2222 48999999999999999999999999987765433 35678899999999999987543
No 15
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.84 E-value=8.9e-20 Score=136.73 Aligned_cols=127 Identities=30% Similarity=0.560 Sum_probs=98.2
Q ss_pred CCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCC---------------cceEEEEeeecCCcc
Q 024790 129 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPED---------------KNVVLELTYNYGVTD 193 (262)
Q Consensus 129 ~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~ 193 (262)
-.+.|+.|.|+|++++++||+++|||++..+...++..+.+.++...... ....++|........
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~ 105 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTES 105 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcc
Confidence 37899999999999999999999999998776666666777777543210 235788886443221
Q ss_pred ------cc----cCCceeEEEEEecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEecccc
Q 024790 194 ------YD----KGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 257 (262)
Q Consensus 194 ------~~----~~~~~~~i~~~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~~ 257 (262)
+. .+.|+.||+|.|+|+++++++|+++|+.+...|....+ .++++++||||++|||++.+..
T Consensus 106 ~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~--~~~~fi~DPdG~~IEl~e~~~~ 177 (185)
T PLN03042 106 DPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKM--KGLAFIKDPDGYWIEIFDLKRI 177 (185)
T ss_pred cccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCc--eeEEEEECCCCCEEEEEECCCc
Confidence 11 12589999999999999999999999999876643222 4678899999999999997763
No 16
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.84 E-value=9.1e-20 Score=131.67 Aligned_cols=123 Identities=18% Similarity=0.224 Sum_probs=93.7
Q ss_pred ceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcc------cccCCceeEEE
Q 024790 131 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD------YDKGNAYAQIA 204 (262)
Q Consensus 131 ~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~i~ 204 (262)
++|+.|.|+|++++++||+++|||++......++ ....++.. +...+.+........ ...+++..|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~--~~~~~~~~----g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSED--KASYLLRQ----GDINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCc--eEEEEEEc----CCEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 5899999999999999999999999987644321 22233331 234555554222111 12456889999
Q ss_pred EEecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccccccc
Q 024790 205 IGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFLKE 260 (262)
Q Consensus 205 ~~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~~~~~ 260 (262)
|.|+|+++++++|+++|++++.+|...+++ .+.++++||+|+.|+|+|++.+.+.
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~-~~~~~i~dp~G~~ie~~~~~~~~~~ 129 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEPGE-LKIAAIKGYGDSLHTLVDRKGYKGP 129 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecCCe-EEEEEEeccCCcEEEEEecCCCCCc
Confidence 999999999999999999999998775654 4899999999999999999887544
No 17
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.83 E-value=2.9e-19 Score=126.36 Aligned_cols=120 Identities=43% Similarity=0.772 Sum_probs=91.5
Q ss_pred ceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCC-cccccCCceeEEEEEecC
Q 024790 131 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGV-TDYDKGNAYAQIAIGTDD 209 (262)
Q Consensus 131 ~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~i~~~v~d 209 (262)
+.|+.+.|+|++++.+||+++|||++......++......++..........+.+....+. .+...+.+..|++|.++|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5799999999999999999999999887654444344555666432113456666654332 223334578999999999
Q ss_pred HHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEE
Q 024790 210 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 252 (262)
Q Consensus 210 l~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~ 252 (262)
+++++++++++|+++..+|.... .++++|++||+||.|||+
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDGG--MKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccCC--CceEEEEECCCCCEEEeC
Confidence 99999999999999998886553 357899999999999985
No 18
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.83 E-value=3.6e-20 Score=143.24 Aligned_cols=255 Identities=18% Similarity=0.302 Sum_probs=170.8
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCC-----CCCCCCceeEEE
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK-----YDIGTGFGHFGI 75 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~i~~ 75 (262)
++||.+.|.|...+..||+..|||++....+.+.+....+-..+......+.+.-..++..+. ..+|.|...+||
T Consensus 18 f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgvkdvaf 97 (381)
T KOG0638|consen 18 FHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGVKDVAF 97 (381)
T ss_pred eeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccchhceEE
Confidence 589999999999999999999999988755444332222222222222222222221111111 225678888999
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCcccCC--CCeEEEEEECCCCCEEEEEEcCCC-----------------C-------C
Q 024790 76 AVDDVAKTVELIKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLERGPT-----------------P-------E 129 (262)
Q Consensus 76 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~~~DP~G~~iel~~~~~~-----------------~-------~ 129 (262)
+|+|++++.+.+.++|+.+..+|....+ |..+++.+..+.-....+++.... | .
T Consensus 98 eVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~FLPGF~~v~~~~~fp~l~~~~~~ 177 (381)
T KOG0638|consen 98 EVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGPFLPGFEPVSSDALFPKLPKGGLN 177 (381)
T ss_pred EecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccccCCCCcccCccccccCCCCcccee
Confidence 9999999999999999999998876544 556777777777655555543311 1 2
Q ss_pred CceeEEeeec--ChhhhHHHHHHhcCCeeeeeccCcCccceeee---eccCCCCcceEEEEeeecCCcc----------c
Q 024790 130 PLCQVMLRVG--DLDRSINFYEQAFGMELLRKRDNPEYKYTIAM---MGYGPEDKNVVLELTYNYGVTD----------Y 194 (262)
Q Consensus 130 ~~~~v~l~v~--d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~----------~ 194 (262)
+++|++.+++ .++.+.+||.+.|||...+..+.+..+..... .-..+.+....+.+.+..+... +
T Consensus 178 ~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~mpinEp~~G~k~ksQIqeyv~y 257 (381)
T KOG0638|consen 178 RIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIKMPINEPAPGKKKKSQIQEYVEY 257 (381)
T ss_pred ehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCCccEEEeccCCCCCCccHHHHHHHHHh
Confidence 7899999999 78999999999999998887664433221111 1112233334444444332221 3
Q ss_pred ccCCceeEEEEEecCHHHHHHHHHHhCCeeecCCccC--------CC-----C-------cceEEEEeCCCCcEEEEEec
Q 024790 195 DKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPL--------PG-----I-------NTKITACLDPDGWKTVFVDN 254 (262)
Q Consensus 195 ~~~~~~~~i~~~v~dl~~~~~~l~~~g~~~~~~~~~~--------~~-----~-------~~~~~~~~DP~G~~ie~~~~ 254 (262)
..|+|++||++.++|+-.+++.++++|.+++.+|..- .. . ...+..=.|-.|.++.++..
T Consensus 258 ~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De~gyLLQIFTK 337 (381)
T KOG0638|consen 258 HGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDENGYLLQIFTK 337 (381)
T ss_pred cCCCceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEecCCCcEEeeeecc
Confidence 4578999999999999999999999999999888321 10 0 01344446777888888764
Q ss_pred c
Q 024790 255 V 255 (262)
Q Consensus 255 ~ 255 (262)
+
T Consensus 338 p 338 (381)
T KOG0638|consen 338 P 338 (381)
T ss_pred c
Confidence 4
No 19
>PLN02300 lactoylglutathione lyase
Probab=99.82 E-value=3.3e-19 Score=144.53 Aligned_cols=132 Identities=52% Similarity=0.866 Sum_probs=103.0
Q ss_pred CCCCCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEE
Q 024790 126 PTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAI 205 (262)
Q Consensus 126 ~~~~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ 205 (262)
....++.|+.|.|+|++++++||+++|||++..+...++..+...++..++...+..+++....+......+.+..|++|
T Consensus 20 ~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hia~ 99 (286)
T PLN02300 20 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHFGI 99 (286)
T ss_pred cccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEEEE
Confidence 34568999999999999999999999999987655444444455566554434456677765433333334568899999
Q ss_pred EecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEecccc
Q 024790 206 GTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 257 (262)
Q Consensus 206 ~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~~ 257 (262)
.|+|+++++++++++|+++...|...+++..+++|++||+||.|||++++..
T Consensus 100 ~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~ 151 (286)
T PLN02300 100 AVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPT 151 (286)
T ss_pred EeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCC
Confidence 9999999999999999999988877776555788999999999999998653
No 20
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.82 E-value=1.3e-19 Score=133.40 Aligned_cols=123 Identities=17% Similarity=0.184 Sum_probs=91.2
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCc-CccceeeeeccCCCC---cceEEEEeeecCCcccccCCceeEEEE
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNP-EYKYTIAMMGYGPED---KNVVLELTYNYGVTDYDKGNAYAQIAI 205 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~i~~ 205 (262)
+++||.|.|+|++++++||+++|||++......+ .......++..++.. ..+.+.+. ...++++.||+|
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-------~~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALA-------QGPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHh-------cCCCCceeEEEE
Confidence 5789999999999999999999999987654332 122344555543211 01112221 112468999999
Q ss_pred EecCHHHHH---HHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEecccccc
Q 024790 206 GTDDVYKTA---EAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFLK 259 (262)
Q Consensus 206 ~v~dl~~~~---~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~~~~ 259 (262)
.|+|++++. ++|+++|+++..+|+++..+...++|++||+||.|||+.......
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~~~~ 130 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGDLVN 130 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCceeEc
Confidence 999999986 999999999998888777665567899999999999998776543
No 21
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.82 E-value=1.1e-18 Score=130.77 Aligned_cols=124 Identities=40% Similarity=0.710 Sum_probs=93.2
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCC---------------ceeEEEeeecCCCCC--
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPED---------------SHFVIELTYNYGVDK-- 63 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~~~~-- 63 (262)
++|++|.|+|+++|++||+++|||++..+...+..++..+++..+... ....++|..+.....
T Consensus 28 ~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~~p 107 (185)
T PLN03042 28 MQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTESDP 107 (185)
T ss_pred EEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcccc
Confidence 589999999999999999999999998887666666667776543210 123577775433211
Q ss_pred ----CC----CCCCceeEEEEeCCHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCC
Q 024790 64 ----YD----IGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 126 (262)
Q Consensus 64 ----~~----~~~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~ 126 (262)
+. .+.|+.|++|.|+|+++++++|+++|+.+...|.... ....+++.||||+.|||++...
T Consensus 108 ~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~--~~~~~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 108 EFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGK--MKGLAFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred cccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCC--ceeEEEEECCCCCEEEEEECCC
Confidence 11 2358999999999999999999999999886654322 3466788999999999998643
No 22
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.82 E-value=4.7e-19 Score=129.02 Aligned_cols=122 Identities=18% Similarity=0.238 Sum_probs=90.1
Q ss_pred CCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcC-----------ccceeeeeccCCCCcceEEEEeeecCCcc----
Q 024790 129 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-----------YKYTIAMMGYGPEDKNVVLELTYNYGVTD---- 193 (262)
Q Consensus 129 ~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 193 (262)
.+++||+|.|+|++++++||++ |||++......++ ....+.++.. ..++..++|.....+..
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~g~~~iel~~~~~~~~~~~~ 78 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRT--PDGHSRLELSKFHHPAVIADH 78 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeC--CCCCceEEEEEecCCCCcCcC
Confidence 3689999999999999999998 9998865433221 1123344432 22456778876432211
Q ss_pred ---cccCCceeEEEEEecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEec
Q 024790 194 ---YDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 254 (262)
Q Consensus 194 ---~~~~~~~~~i~~~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 254 (262)
...+.++.||+|.|+|+++++++|+++|+++..++...+++ .+++|++||+|+.|||+|.
T Consensus 79 ~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~-~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 79 RPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENS-YRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCC-eEEEEEECCCCCEEEeeec
Confidence 12345788999999999999999999999999866554443 4889999999999999984
No 23
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.82 E-value=7.7e-19 Score=123.55 Aligned_cols=114 Identities=33% Similarity=0.632 Sum_probs=86.9
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcC-----------ccceeeeeccCCCCcceEEEEeeecCCcccccCC
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-----------YKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGN 198 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 198 (262)
++.|++|.|+|+++|++||+++|||++..+.+.++ +.+...++...+...+..++|...++..++..+.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 57899999999999999999999999887665554 3333344554434456789999876655555455
Q ss_pred ceeEEEEEecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEe
Q 024790 199 AYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 253 (262)
Q Consensus 199 ~~~~i~~~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 253 (262)
+ |++|.|++. ++.++|+++|+++...|. .+++++||||+.|||+.
T Consensus 82 ~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNAKKHNWPVTEVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHHHHCCCceecCCC-------CEEEEECCCCCEEEEec
Confidence 5 666666766 566999999999987654 27899999999999985
No 24
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.82 E-value=1.3e-18 Score=123.03 Aligned_cols=120 Identities=54% Similarity=0.938 Sum_probs=89.4
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCC-CCCCCCCCceeEEEEeCC
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV-DKYDIGTGFGHFGIAVDD 79 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~i~~~v~d 79 (262)
|+||+|.|+|++++.+||+++||+++......++.....+++..+.......+++...... .+...+.++.|++|.++|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 6899999999999999999999999887654333344556666543101234455443222 222344578899999999
Q ss_pred HHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEE
Q 024790 80 VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 122 (262)
Q Consensus 80 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~ 122 (262)
+++++++++++|+++..+|... ++.+.++|.||+|+.+||+
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDG--GMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccC--CCceEEEEECCCCCEEEeC
Confidence 9999999999999998776654 3567789999999999985
No 25
>PRK11478 putative lyase; Provisional
Probab=99.80 E-value=1.9e-18 Score=123.66 Aligned_cols=121 Identities=15% Similarity=0.129 Sum_probs=84.9
Q ss_pred CCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcC-ccceeeeeccCCCCcceEEEEeeecCCcc---cccCCceeEEE
Q 024790 129 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-YKYTIAMMGYGPEDKNVVLELTYNYGVTD---YDKGNAYAQIA 204 (262)
Q Consensus 129 ~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~i~ 204 (262)
.+++||+|.|+|++++.+||+++|||++......++ ..+.. .+... ++..+++.....+.. .....+..|++
T Consensus 5 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~-~~~~~---~~~~l~l~~~~~~~~~~~~~~~~g~~hi~ 80 (129)
T PRK11478 5 KQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKG-DLALN---GQYVIELFSFPFPPERPSRPEACGLRHLA 80 (129)
T ss_pred ceecEEEEEcCCHHHHHHHHHHHhCCEeccccccccccccee-eEecC---CCcEEEEEEecCCCCCCCCCCCCceeEEE
Confidence 468999999999999999999999999864322111 11111 12211 245666665322111 11235788999
Q ss_pred EEecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEec
Q 024790 205 IGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 254 (262)
Q Consensus 205 ~~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 254 (262)
|.|+|+++++++|+++|+++...+....++ .+++|++||+||.|||+|.
T Consensus 81 f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 81 FSVDDIDAAVAHLESHNVKCEAIRVDPYTQ-KRFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred EEeCCHHHHHHHHHHcCCeeeccccCCCCC-CEEEEEECCCCCEEEEEeC
Confidence 999999999999999999987443332233 4789999999999999974
No 26
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.80 E-value=2.3e-18 Score=124.00 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=91.6
Q ss_pred CCCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEe
Q 024790 128 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 207 (262)
Q Consensus 128 ~~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v 207 (262)
|.+++|+.|.|+|++++++||+++|||++..... . ...++...+...++.+.+.... ....++.|++|.|
T Consensus 1 ~~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~-~----~~~~~~~~~~~~~~~i~l~~~~-----~~~~g~~hiaf~v 70 (134)
T cd08360 1 PRRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK-G----RGAFLRAAGGGDHHNLFLIKTP-----APMAGFHHAAFEV 70 (134)
T ss_pred CceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec-C----cEEEEECCCCCCCcEEEEecCC-----CCCCcceEEEEEe
Confidence 4678999999999999999999999999875532 1 1234543322245566665321 1246899999999
Q ss_pred cCHHHHH---HHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccccc
Q 024790 208 DDVYKTA---EAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFL 258 (262)
Q Consensus 208 ~dl~~~~---~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~~~ 258 (262)
+|++++. ++|+++|+++...|..++.+..+++|++||+||.|||.......
T Consensus 71 ~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~~~ 124 (134)
T cd08360 71 GDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMDYV 124 (134)
T ss_pred CCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccccc
Confidence 9988777 59999999988777777665557789999999999999866543
No 27
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.80 E-value=2.2e-18 Score=125.28 Aligned_cols=118 Identities=10% Similarity=0.128 Sum_probs=86.4
Q ss_pred CCCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCcc-ceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEE
Q 024790 128 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK-YTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIG 206 (262)
Q Consensus 128 ~~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~ 206 (262)
+.+++|++|.|+|++++.+||+++|||++..+...+++. ....++... ...+.+.+.. ...+++.|++|.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~--~~~h~~~~~~-------~~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCS--NKPHDIAFVG-------GPDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecC--CCcceEEEec-------CCCCCceEEEEE
Confidence 457999999999999999999999999986654322221 123344432 1233444431 113578999999
Q ss_pred ecCHHH---HHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEec
Q 024790 207 TDDVYK---TAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 254 (262)
Q Consensus 207 v~dl~~---~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 254 (262)
|+|+++ +.++|+++|+++..+|.++..+.++.+|++|||||.|||++.
T Consensus 75 v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 998877 568999999999877776654445789999999999999875
No 28
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.80 E-value=1.8e-18 Score=128.41 Aligned_cols=126 Identities=21% Similarity=0.253 Sum_probs=88.6
Q ss_pred CCCceeEEeeecChhhhHHHHHHhcCCeeeeec----cC--------------cCccceeeeeccCCCCcceEEEEeeec
Q 024790 128 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKR----DN--------------PEYKYTIAMMGYGPEDKNVVLELTYNY 189 (262)
Q Consensus 128 ~~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (262)
+.+++||.|.|+|++++++||+++|||++..+. .. ......+.++..+ .+..++|....
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTG---DRIGVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecC---CCCcEEEEecc
Confidence 357899999999999999999999999875321 10 0111334455432 24457777754
Q ss_pred CCcccc-----cCCceeEEEEEecCHHHHHHHHHHhCCeeecCCccC--CCC-cceEEEEeCCCCcEEEEEeccc
Q 024790 190 GVTDYD-----KGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPL--PGI-NTKITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 190 ~~~~~~-----~~~~~~~i~~~v~dl~~~~~~l~~~g~~~~~~~~~~--~~~-~~~~~~~~DP~G~~ie~~~~~~ 256 (262)
...... .+.|..|++|.|+|+++++++|+++|+++..++... ++. ..+.+|++|||||.|||+++..
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 322211 246899999999999999999999998865433211 221 2378999999999999999764
No 29
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.80 E-value=4.9e-18 Score=122.61 Aligned_cols=121 Identities=22% Similarity=0.256 Sum_probs=90.5
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCC------CCCCCCceeEE
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK------YDIGTGFGHFG 74 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~i~ 74 (262)
|+|++|.|+|++++.+||+++|||++..+.... .....++. ... ..+.+........ ...+.+..|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~--~g~--~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLR--QGD--INFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEE--cCC--EEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 689999999999999999999999988764322 12233332 222 3445543221111 12456888999
Q ss_pred EEeCCHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCCCC
Q 024790 75 IAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTP 128 (262)
Q Consensus 75 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~~~ 128 (262)
|.|+|+++++++|+++|+++..+|.... ++.+.++++||+|+.|+|++.....
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~-~~~~~~~i~dp~G~~ie~~~~~~~~ 127 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEP-GELKIAAIKGYGDSLHTLVDRKGYK 127 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecC-CeEEEEEEeccCCcEEEEEecCCCC
Confidence 9999999999999999999998887744 4778899999999999999976553
No 30
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.80 E-value=3.8e-18 Score=124.22 Aligned_cols=120 Identities=26% Similarity=0.347 Sum_probs=86.2
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCC-----------CcceeeEeeecCCCceeEEEeeecCC---CC----
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPE-----------EKYTNAFLGYGPEDSHFVIELTYNYG---VD---- 62 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~---~~---- 62 (262)
++||+|.|+|++++.+||++ |||++..+...++ ......++.... ....+++..... ..
T Consensus 4 i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--g~~~iel~~~~~~~~~~~~~~ 80 (142)
T cd08353 4 MDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPD--GHSRLELSKFHHPAVIADHRP 80 (142)
T ss_pred eeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCC--CCceEEEEEecCCCCcCcCCC
Confidence 58999999999999999998 9998876543221 112233343222 233556654221 11
Q ss_pred CCCCCCCceeEEEEeCCHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEc
Q 024790 63 KYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 63 ~~~~~~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 124 (262)
....+.|+.|+||.|+|+++++++|+++|+++..++.... .+.+.+|+.||+|+.|||++.
T Consensus 81 ~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~-~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 81 APVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYE-NSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecC-CCeEEEEEECCCCCEEEeeec
Confidence 1123458889999999999999999999999987665444 367889999999999999974
No 31
>PRK11478 putative lyase; Provisional
Probab=99.79 E-value=5.3e-18 Score=121.34 Aligned_cols=119 Identities=23% Similarity=0.274 Sum_probs=81.3
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCC---CCCCCCCCCceeEEEEe
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG---VDKYDIGTGFGHFGIAV 77 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~i~~~v 77 (262)
|+||+|.|+|++++.+||+++|||++..+...+........+..+. ...+++..... .+......|+.|++|.|
T Consensus 7 i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~g~~hi~f~v 83 (129)
T PRK11478 7 VHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNG---QYVIELFSFPFPPERPSRPEACGLRHLAFSV 83 (129)
T ss_pred ecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCC---CcEEEEEEecCCCCCCCCCCCCceeEEEEEe
Confidence 5899999999999999999999999865422111111111222222 22455543211 11122345788999999
Q ss_pred CCHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024790 78 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 123 (262)
Q Consensus 78 ~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~ 123 (262)
+|+++++++|+++|+++...+.... ++.+.+||.||+|+.|||++
T Consensus 84 ~d~~~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 84 DDIDAAVAHLESHNVKCEAIRVDPY-TQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred CCHHHHHHHHHHcCCeeeccccCCC-CCCEEEEEECCCCCEEEEEe
Confidence 9999999999999999864332222 35678899999999999986
No 32
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.79 E-value=2.2e-18 Score=122.49 Aligned_cols=119 Identities=21% Similarity=0.289 Sum_probs=85.5
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcc---cccCCceeEEEEE
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD---YDKGNAYAQIAIG 206 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~i~~~ 206 (262)
++.|++|.|+|++++++||+++|||++......+...+...++..+ .+..+++.......+ .....+..|++|.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFD---DGARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecC---CCcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 4789999999999999999999999986443222223344455543 235567765322211 1223578999999
Q ss_pred ec---CHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEE
Q 024790 207 TD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 252 (262)
Q Consensus 207 v~---dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~ 252 (262)
|+ |+++++++|+++|+++..+|...+.+ .+.++++|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g-~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDG-YYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCC-eEEEEEECCCCCEEEeC
Confidence 95 58999999999999999877544443 24577999999999984
No 33
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.79 E-value=4.2e-18 Score=120.70 Aligned_cols=116 Identities=17% Similarity=0.173 Sum_probs=85.1
Q ss_pred CCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEec
Q 024790 129 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 208 (262)
Q Consensus 129 ~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~ 208 (262)
.+++|+.|.|+|++++++||+++|||++..... +. . .++.......++.+.+.. ...++..|++|.|.
T Consensus 3 ~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~--~-~~~~~~~~~~~~~~~l~~-------~~~~~~~hiaf~v~ 70 (122)
T cd07265 3 LRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG--R-VYLKAWDEFDHHSIVLRE-------ADTAGLDFMGFKVL 70 (122)
T ss_pred ceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc--e-EEEEccCCCcccEEEecc-------CCCCCeeEEEEEeC
Confidence 478999999999999999999999999865431 11 1 223221112234454431 12357889999996
Q ss_pred ---CHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccc
Q 024790 209 ---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 209 ---dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 256 (262)
|+++++++|+++|+++...|.....+.++.+|++||+||.|||++..+
T Consensus 71 ~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~~ 121 (122)
T cd07265 71 DDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADKE 121 (122)
T ss_pred CHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEecc
Confidence 899999999999999987665444443578999999999999998765
No 34
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.78 E-value=1.7e-17 Score=116.78 Aligned_cols=113 Identities=43% Similarity=0.849 Sum_probs=81.7
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCC-----------CcceeeEeeecCCCceeEEEeeecCCCCCCCCCCC
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPE-----------EKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTG 69 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 69 (262)
+.|++|.|+|+++|++||+++|||++..+...+. +.+...++.+++......+++..+.+..+...+.+
T Consensus 3 ~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~~ 82 (127)
T cd08358 3 ALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGND 82 (127)
T ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCCC
Confidence 5799999999999999999999999887654443 22223445544334456788887655444454555
Q ss_pred ceeEEEEeCCHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024790 70 FGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 123 (262)
Q Consensus 70 ~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~ 123 (262)
|++|.|++. ++.++|+++|+++...+. ..+++.||||+.|||+.
T Consensus 83 --~~hlav~~~-d~~~~l~~~Gv~~~~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 83 --FLGITIHSK-QAVSNAKKHNWPVTEVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred --EEEEEEECH-HHHHHHHHCCCceecCCC-------CEEEEECCCCCEEEEec
Confidence 566777766 556999999998865432 16888999999999984
No 35
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.78 E-value=8.2e-18 Score=119.47 Aligned_cols=120 Identities=20% Similarity=0.241 Sum_probs=84.7
Q ss_pred CCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcC-ccceeeeeccCCCCcceEEEEeeecCC--cc-cccCCceeEEE
Q 024790 129 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-YKYTIAMMGYGPEDKNVVLELTYNYGV--TD-YDKGNAYAQIA 204 (262)
Q Consensus 129 ~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~~~~i~ 204 (262)
.+++|+.|.|+|++++++||+++|||++......++ ..+. ..+... ....+++...... .+ ...+.+..|++
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~-~~~~~~---~~~~i~l~~~~~~~~~~~~~~~~g~~h~~ 77 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYK-LDLLLN---GGYQLELFSFPNPPERPSYPEACGLRHLA 77 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEE-EEEecC---CCcEEEEEEcCCCCCCCCCCcCCCceEEE
Confidence 368999999999999999999999999876532222 1122 222211 1234444432221 11 12345889999
Q ss_pred EEecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEe
Q 024790 205 IGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 253 (262)
Q Consensus 205 ~~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 253 (262)
|.|+|+++++++++++|+++...+....++ .+++|++||+||.|||+|
T Consensus 78 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 78 FSVEDIEAAVKHLKAKGVEVEPIRVDEFTG-KRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EEeCCHHHHHHHHHHcCCccccccccCCCc-eEEEEEECCCCCEEEecC
Confidence 999999999999999999988765433333 478999999999999986
No 36
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.78 E-value=1.3e-17 Score=118.55 Aligned_cols=118 Identities=25% Similarity=0.389 Sum_probs=84.1
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCC---CCCCCCceeEEEEe
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK---YDIGTGFGHFGIAV 77 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~i~~~v 77 (262)
|+||+|.|+|++++++||+++|||++......+...+...|+.+++ . ..+++.......+ .....|+.|++|.|
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~~~~~g~~hi~f~v 78 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD-G--ARLELMTRPDIAPSPNEGERTGWAHLAFSV 78 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC-C--cEEEEEcCcccCCCcccCCCCceEEEEEEC
Confidence 6899999999999999999999999865433223334455666542 1 2455554222111 12335789999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEE
Q 024790 78 D---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 122 (262)
Q Consensus 78 ~---d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~ 122 (262)
+ |+++++++|+++|+++..+|..... +.+.+++.|||||.|||.
T Consensus 79 ~~~~~v~~~~~~l~~~g~~~~~~~~~~~~-g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 79 GSKEAVDELTERLRADGYLIIGEPRTTGD-GYYESVILDPEGNRIEIT 125 (125)
T ss_pred CCHHHHHHHHHHHHHCCCEEEeCceecCC-CeEEEEEECCCCCEEEeC
Confidence 6 4899999999999999876654443 445567899999999983
No 37
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.78 E-value=9.4e-18 Score=123.56 Aligned_cols=125 Identities=14% Similarity=0.171 Sum_probs=92.7
Q ss_pred CCCCceeEEeeecChhhhHHHHHHhcCCeeeeeccCc---CccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEE
Q 024790 127 TPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNP---EYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQI 203 (262)
Q Consensus 127 ~~~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i 203 (262)
.+.+++||.|.|+|++++++||+++|||++....... +......++..+ ..++.+.+... ....++.|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~i~~~~~------~~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCN--GRHHSLALAEG------PGPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeC--CCCCCEEEEcC------CCCceeEEE
Confidence 4568999999999999999999999999986543221 112344555542 23344544321 124689999
Q ss_pred EEEecCHH---HHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEecccccc
Q 024790 204 AIGTDDVY---KTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFLK 259 (262)
Q Consensus 204 ~~~v~dl~---~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~~~~ 259 (262)
+|.|+|++ +++++|+++|+++..++..++.+..+.+|++||+|+.|||+......+
T Consensus 78 af~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~~~~ 136 (154)
T cd07237 78 MLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGRTVD 136 (154)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCceEcc
Confidence 99998655 689999999999988887776655688999999999999998766543
No 38
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.77 E-value=1.3e-17 Score=116.67 Aligned_cols=114 Identities=23% Similarity=0.255 Sum_probs=85.0
Q ss_pred ceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecCH
Q 024790 131 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDV 210 (262)
Q Consensus 131 ~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~dl 210 (262)
+.|+.|.|+|++++++||+++||+++..... ... .+.++..++ ...+.+....... ...+...|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~--~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGG--DYAVFSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCC--ceEEEEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999875543 122 233444321 2233333322111 2345678999999999
Q ss_pred HHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEe
Q 024790 211 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 253 (262)
Q Consensus 211 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 253 (262)
++++++|+++|+++..+|...+++ ++.++++||+||.|+|+|
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPGV-GRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCCc-EEEEEEECCCCCEEEeEC
Confidence 999999999999999988777643 489999999999999975
No 39
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.77 E-value=2.4e-17 Score=117.09 Aligned_cols=119 Identities=29% Similarity=0.382 Sum_probs=82.7
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCC--CC-CCCCCCCceeEEEEe
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG--VD-KYDIGTGFGHFGIAV 77 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~-~~~~~~~~~~i~~~v 77 (262)
|+||+|.|+|++++++||+++|||++..+...++.......+... ... .+++..... .. ....+.|+.|++|.|
T Consensus 4 ~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~--~i~l~~~~~~~~~~~~~~~~g~~h~~~~v 80 (125)
T cd08352 4 IHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLN-GGY--QLELFSFPNPPERPSYPEACGLRHLAFSV 80 (125)
T ss_pred cceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecC-CCc--EEEEEEcCCCCCCCCCCcCCCceEEEEEe
Confidence 689999999999999999999999987654222211111222221 122 334432211 11 112345888999999
Q ss_pred CCHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024790 78 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 123 (262)
Q Consensus 78 ~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~ 123 (262)
+|+++++++|+++|+++..++..... +.+.+|+.||+|+.|||+|
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 81 EDIEAAVKHLKAKGVEVEPIRVDEFT-GKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred CCHHHHHHHHHHcCCccccccccCCC-ceEEEEEECCCCCEEEecC
Confidence 99999999999999998765544333 5567899999999999975
No 40
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.77 E-value=1.2e-17 Score=122.78 Aligned_cols=121 Identities=22% Similarity=0.353 Sum_probs=85.1
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCC-CCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCC
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIP-EEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD 79 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d 79 (262)
|+||+|.|+|++++++||+++||+++..+...+ .......|+..+.... . ++... ..... ..+.++.|+||.|+|
T Consensus 2 i~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~-~~l~~-~~~~g~~Hiaf~v~d 77 (153)
T cd07257 2 LGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEE-Y-VDHHT-LALAQ-GPESGVHHAAFEVHD 77 (153)
T ss_pred ccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCC-c-ccchH-HHHhc-CCCCceeEEEEEcCC
Confidence 689999999999999999999999987654332 2233566666543211 0 01000 00000 114689999999999
Q ss_pred HHHHH---HHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcC
Q 024790 80 VAKTV---ELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 125 (262)
Q Consensus 80 ~~~~~---~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 125 (262)
++++. ++|+++|+++...+.....+...++|+.||+||.|||+...
T Consensus 78 ie~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 78 FDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred HHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 99986 99999999987665544444566789999999999999543
No 41
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.77 E-value=1.4e-17 Score=120.47 Aligned_cols=116 Identities=18% Similarity=0.255 Sum_probs=88.5
Q ss_pred eeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecCH-
Q 024790 132 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDV- 210 (262)
Q Consensus 132 ~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~dl- 210 (262)
+||.|.|+|++++.+||+++|||++..+... ...++...+...++.+.+. .....++.|++|.|+|+
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~-------~~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVG-------PASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeec-------cCCCCceEEEEEECCCHH
Confidence 4899999999999999999999998765321 2345543322233444332 12346899999999755
Q ss_pred --HHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEecccccc
Q 024790 211 --YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFLK 259 (262)
Q Consensus 211 --~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~~~~ 259 (262)
+++.++|+++|+++..+|.+++.+..+.+|++||+|+.|||.-..+...
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~~~~ 119 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGMEEFA 119 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcceec
Confidence 5679999999999998888777666688999999999999998776554
No 42
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.77 E-value=2.8e-17 Score=122.00 Aligned_cols=123 Identities=28% Similarity=0.329 Sum_probs=83.7
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEec--CC----------------CCcceeeEeeecCCCceeEEEeeecCCCC
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRD--IP----------------EEKYTNAFLGYGPEDSHFVIELTYNYGVD 62 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 62 (262)
|+||+|.|+|+++|++||+++|||++..+.. .. ......+++..++ ...+++.......
T Consensus 5 i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~~~~ 81 (162)
T TIGR03645 5 FSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFKNQE 81 (162)
T ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEeccCCC
Confidence 5899999999999999999999998753210 00 0113345555433 2235666533211
Q ss_pred CCC-----CCCCceeEEEEeCCHHHHHHHHHHcCCeeecCC-ccc-C-CCCeEEEEEECCCCCEEEEEEcCC
Q 024790 63 KYD-----IGTGFGHFGIAVDDVAKTVELIKAKGGKVTREP-GPV-K-GGNTVIAFIEDPDGYKFELLERGP 126 (262)
Q Consensus 63 ~~~-----~~~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~-~~~-~-~~~~~~~~~~DP~G~~iel~~~~~ 126 (262)
... .+.|+.|+||.|+|+++++++|+++|+++..++ ... . ....+.+|+.|||||.|||++...
T Consensus 82 ~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 82 NPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 111 246899999999999999999999998764332 111 1 112478999999999999998753
No 43
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.76 E-value=4.9e-17 Score=118.17 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=81.5
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCc-ceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCC
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEK-YTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD 79 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d 79 (262)
|+||+|.|+|++++.+||+++|||++..+...+.+. ....|+..+.. .+ .+.+... .+.++.|+||.|+|
T Consensus 7 l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~-~h-~~~~~~~-------~~~~~~Hiaf~v~d 77 (143)
T cd07243 7 LDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK-PH-DIAFVGG-------PDGKLHHFSFFLES 77 (143)
T ss_pred eCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC-cc-eEEEecC-------CCCCceEEEEEcCC
Confidence 689999999999999999999999987654222221 23445544332 22 2233211 13578899999999
Q ss_pred HHH---HHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEc
Q 024790 80 VAK---TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 80 ~~~---~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 124 (262)
+++ +.++|.++|+++...|.....+..+++||.|||||.|||+..
T Consensus 78 ~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 78 WEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred HHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 877 578999999998655543332346789999999999999853
No 44
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.76 E-value=2.3e-17 Score=122.46 Aligned_cols=120 Identities=20% Similarity=0.230 Sum_probs=84.4
Q ss_pred CCCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEe
Q 024790 128 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 207 (262)
Q Consensus 128 ~~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v 207 (262)
|.+++||+|.|+|++++++||+++|||++......+++.....++...+ ..+.+.+.. ..++++.|++|.|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~--~~~~i~l~~-------~~~~~~~Hiaf~v 71 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKG--GVHDTALTG-------GNGPRLHHVAFWV 71 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCC--CcceEEEec-------CCCCceeEEEEEc
Confidence 4578999999999999999999999999875443322222233443221 234444431 1245789999999
Q ss_pred cC---HHHHHHHHHHhCCee--ecCCccCCCCcceEEEEeCCCCcEEEEEeccc
Q 024790 208 DD---VYKTAEAIKLFGGKV--TREPGPLPGINTKITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 208 ~d---l~~~~~~l~~~g~~~--~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 256 (262)
+| +++++++|+++|+.. ..+|..+..+..+++|++||+||.|||++...
T Consensus 72 ~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~~ 125 (161)
T cd07256 72 PEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGDY 125 (161)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecCc
Confidence 75 777889999999863 33455444334467999999999999987543
No 45
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.76 E-value=4.9e-17 Score=117.10 Aligned_cols=115 Identities=23% Similarity=0.311 Sum_probs=84.2
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCCH
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDV 80 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d~ 80 (262)
|+||+|.|+|++++++||+++||+++..+.. . ...|+..+....+..+.+..... ...++.|++|.|+|+
T Consensus 4 l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v~d~ 73 (134)
T cd08360 4 LGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEVGDI 73 (134)
T ss_pred eeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEeCCH
Confidence 6899999999999999999999999876542 1 24566554222233344443211 146899999999998
Q ss_pred HHHH---HHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcC
Q 024790 81 AKTV---ELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 125 (262)
Q Consensus 81 ~~~~---~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 125 (262)
+++. ++|.++|+++...+.....++..++||.||+|+.|||....
T Consensus 74 ~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~ 121 (134)
T cd08360 74 DEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADM 121 (134)
T ss_pred HHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccc
Confidence 8766 69999999987555444444567789999999999999643
No 46
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.76 E-value=2e-17 Score=118.11 Aligned_cols=119 Identities=23% Similarity=0.318 Sum_probs=85.6
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcc------cccCCceeEE
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD------YDKGNAYAQI 203 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~i 203 (262)
+++|+.|.|+|++++++||+++|||++......++......++..+ ...++|........ ...+.+..|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG----NTKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC----CEEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 4789999999999999999999999987553333333444555432 24566654322111 1124578899
Q ss_pred EEEecCHHHHHHHHHHhCCeeecC-CccCCCCcceEEEE--eCCCCcEEEEEe
Q 024790 204 AIGTDDVYKTAEAIKLFGGKVTRE-PGPLPGINTKITAC--LDPDGWKTVFVD 253 (262)
Q Consensus 204 ~~~v~dl~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~~--~DP~G~~ie~~~ 253 (262)
+|.|+|+++++++|+++|+++..+ |...++| .+..++ +||||+.||++|
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g-~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGAGG-KPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCCCC-CEEEEecccccCcEEEEecC
Confidence 999999999999999999999864 4443443 355666 799999999986
No 47
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.76 E-value=3.4e-17 Score=117.39 Aligned_cols=114 Identities=21% Similarity=0.383 Sum_probs=82.4
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCC-
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD- 79 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d- 79 (262)
|+||.|.|+|++++++||+++||+++..... ...++..++ . .+.+......+......++.|++|.+++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~~--~--~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIGG--T--WLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC------ccceEeeCc--e--EEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 6899999999999999999999999865422 123444432 2 3344332222222223478899999984
Q ss_pred -HHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcC
Q 024790 80 -VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 125 (262)
Q Consensus 80 -~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 125 (262)
+++++++|.++|+++..++..... +.+.++|.||+||.|||.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~-~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVR-DRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccC-cceEEEEECCCCCEEEEecCc
Confidence 999999999999998654433332 567899999999999999764
No 48
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.76 E-value=4.6e-17 Score=115.30 Aligned_cols=113 Identities=29% Similarity=0.324 Sum_probs=81.1
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeC--
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD-- 78 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~-- 78 (262)
|+||.|.|+|++++.+||+++|||++..... . ..+++.......+..+.+.. ....++.|++|.|.
T Consensus 5 l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~---~~~~~~~~~~~~~~~~~l~~-------~~~~~~~hiaf~v~~~ 72 (122)
T cd07265 5 PGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--Q---GRVYLKAWDEFDHHSIVLRE-------ADTAGLDFMGFKVLDD 72 (122)
T ss_pred EeEEEEEeCCHHHHHHHHHhccCCEeeeecC--C---ceEEEEccCCCcccEEEecc-------CCCCCeeEEEEEeCCH
Confidence 5899999999999999999999999876531 1 13444432211222333321 11346789999997
Q ss_pred -CHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcC
Q 024790 79 -DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 125 (262)
Q Consensus 79 -d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 125 (262)
|+++++++|+++|+++...|.....+.++.++|.|||||.||++...
T Consensus 73 ~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 73 ADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred HHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 78999999999999987654333334457899999999999998653
No 49
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.75 E-value=6.8e-17 Score=117.08 Aligned_cols=114 Identities=23% Similarity=0.430 Sum_probs=84.0
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeC--
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD-- 78 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~-- 78 (262)
|+||.|.|+|++++++||+++||+++..+.. ..+++..+. . .+.+......+....+.++.|++|.++
T Consensus 5 i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g--~--~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 74 (139)
T PRK04101 5 INHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNG--L--WIALNEEKDIPRNEIHQSYTHIAFSIEEE 74 (139)
T ss_pred EEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCC--e--EEEeeccCCCCCccCCCCeeEEEEEecHH
Confidence 5799999999999999999999999876532 244554432 2 333332222222223456789999998
Q ss_pred CHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcC
Q 024790 79 DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 125 (262)
Q Consensus 79 d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 125 (262)
|+++++++++++|+++...+..... +.+.++|.||+||.|||.+..
T Consensus 75 dv~~~~~~l~~~G~~i~~~~~~~~~-~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 75 DFDHWYQRLKENDVNILPGRERDER-DKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred HHHHHHHHHHHCCceEcCCccccCC-CceEEEEECCCCCEEEEEeCC
Confidence 8999999999999998765544443 568899999999999999764
No 50
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=3.2e-17 Score=115.33 Aligned_cols=117 Identities=23% Similarity=0.292 Sum_probs=85.4
Q ss_pred eEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcc--cccCCceeEEEEEecCH
Q 024790 133 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD--YDKGNAYAQIAIGTDDV 210 (262)
Q Consensus 133 ~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~i~~~v~dl 210 (262)
||.|.|+|++++++||+++|||++.......+ ...+..+... ......+.+........ .....+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPP-GSPETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCC-CCCeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 78999999999999999999999987654222 2333333321 11145555553322211 12345788999999999
Q ss_pred HHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEe
Q 024790 211 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 253 (262)
Q Consensus 211 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 253 (262)
++++++++++|+++..+|.+.++ ++.+|++||+||.|+|+|
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMPY--GTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCCC--ceEEEEECCCCCEEEEeC
Confidence 99999999999999988854444 588999999999999975
No 51
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.75 E-value=5.7e-18 Score=120.69 Aligned_cols=120 Identities=25% Similarity=0.296 Sum_probs=83.6
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccC--cCccceeeeeccCCCCcceEEEEeeecCCccccc---CCceeEEE
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDN--PEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDK---GNAYAQIA 204 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~i~ 204 (262)
+++||++.|+|++++.+||+++|||++...... ........++.. ......+............. ..+..|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRI--GEGHIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEES--TSSCEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecc--cccceeeeeeccccccccccccccccceeEE
Confidence 479999999999999999999999999987652 222233333332 23444444443322221111 01334555
Q ss_pred EE---ecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEE
Q 024790 205 IG---TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 251 (262)
Q Consensus 205 ~~---v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~ 251 (262)
+. ++|+++++++|++.|+++..+|.....+....+|++||+||.|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 55 568899999999999999999877777665667899999999997
No 52
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.75 E-value=9.1e-17 Score=118.31 Aligned_cols=117 Identities=21% Similarity=0.347 Sum_probs=85.8
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCC---CCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEe
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIP---EEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 77 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v 77 (262)
|+||+|.|+|++++++||+++||+++..+.... ......+++..+.... .+.+... ..+.++.|++|.|
T Consensus 10 l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~i~~~~~------~~~~g~~Hiaf~V 81 (154)
T cd07237 10 LGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHH--SLALAEG------PGPKRIHHLMLEV 81 (154)
T ss_pred cCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCC--CEEEEcC------CCCceeEEEEEEc
Confidence 689999999999999999999999987653221 1133456666543322 2233221 1135789999999
Q ss_pred CCHH---HHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcC
Q 024790 78 DDVA---KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 125 (262)
Q Consensus 78 ~d~~---~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 125 (262)
+|.+ +++++|+++|+++..++...+.++.+++|+.||+|+.|||....
T Consensus 82 ~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~ 132 (154)
T cd07237 82 TSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGG 132 (154)
T ss_pred CCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCc
Confidence 8755 68999999999988766555545678899999999999998653
No 53
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.75 E-value=6.6e-17 Score=119.19 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=85.6
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcc-cccCCceeEEEEEec
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD-YDKGNAYAQIAIGTD 208 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~i~~~v~ 208 (262)
+++||+|.|+|++++++||+++|||++..... . .+.+...+ ...+..+.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGG-GGPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecC-CCCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 47899999999999999999999999976543 1 22233221 12356777766422211 112357889999998
Q ss_pred C---HHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEecc
Q 024790 209 D---VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 255 (262)
Q Consensus 209 d---l~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 255 (262)
| +++++++|+++|+++. .+....+ .+.+|++||+||.|||++..
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~-~~~~~~~--~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERLEALGLPVS-GIVDRFY--FKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHHHHCCCCcc-ccccccc--EEEEEEECCCCcEEEEEECC
Confidence 8 8999999999999864 3433333 57899999999999999865
No 54
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.74 E-value=4.8e-17 Score=116.13 Aligned_cols=118 Identities=31% Similarity=0.509 Sum_probs=83.5
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCC-C-----CCCCCCceeEE
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD-K-----YDIGTGFGHFG 74 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-----~~~~~~~~~i~ 74 (262)
|+|++|.|+|++++++||+++|||++.............+++..++ . .+++....... . ...+.++.|+|
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~--~--~i~l~~~~~~~~~~~~~~~~~~~g~~~i~ 77 (128)
T TIGR03081 2 IDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGN--T--KVELLEPLGEDSPIAKFLEKNGGGIHHIA 77 (128)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCC--E--EEEEEecCCCCChHHHHHhcCCCceEEEE
Confidence 6899999999999999999999999876533333334455555442 2 34444321111 0 01245788999
Q ss_pred EEeCCHHHHHHHHHHcCCeeecC-CcccCCCCeEEEEE--ECCCCCEEEEEE
Q 024790 75 IAVDDVAKTVELIKAKGGKVTRE-PGPVKGGNTVIAFI--EDPDGYKFELLE 123 (262)
Q Consensus 75 ~~v~d~~~~~~~l~~~G~~~~~~-~~~~~~~~~~~~~~--~DP~G~~iel~~ 123 (262)
|.|+|+++++++|+++|+++..+ |....+ +.+.+++ +||||+.||+++
T Consensus 78 ~~v~di~~~~~~l~~~G~~~~~~~~~~~~~-g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 78 IEVDDIEAALETLKEKGVRLIDEEPRIGAG-GKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEcCCHHHHHHHHHHCCCcccCCCCccCCC-CCEEEEecccccCcEEEEecC
Confidence 99999999999999999998764 444333 4555666 699999999974
No 55
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.74 E-value=1.2e-16 Score=113.25 Aligned_cols=115 Identities=21% Similarity=0.202 Sum_probs=84.6
Q ss_pred EEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcc----cccCCceeEEEEEecC
Q 024790 134 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD----YDKGNAYAQIAIGTDD 209 (262)
Q Consensus 134 v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~i~~~v~d 209 (262)
-.|.|+|++++++||+++|||++......+++......+..+ ...+.+........ ....++..+++|.|+|
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFG----DGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDD 78 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEEC----CEEEEEecCCCcccccccccCCCceEEEEEEECC
Confidence 468899999999999999999998765333333333334432 12333433222111 1234577899999999
Q ss_pred HHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEe
Q 024790 210 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 253 (262)
Q Consensus 210 l~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 253 (262)
+++++++++++|+++..+|...++|. +.++++||+||.|+|.+
T Consensus 79 ~d~~~~~l~~~G~~v~~~~~~~~~g~-~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 79 VDAHYERARAAGAEILREPTDTPYGS-REFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHHHCCCEEeeCccccCCCc-EEEEEECCCCCEEEEec
Confidence 99999999999999999998888763 78899999999999974
No 56
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.74 E-value=1.7e-16 Score=113.85 Aligned_cols=116 Identities=28% Similarity=0.424 Sum_probs=86.3
Q ss_pred ceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCCHH
Q 024790 2 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVA 81 (262)
Q Consensus 2 ~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d~~ 81 (262)
+||.|.|+|++++++||+++||+++......+ +.....|+..+.... .+.+.... ...++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~--~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDEDHH--DLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCCcc--eEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 69999999999999999999999987654322 223456666654322 33433221 1457889999999864
Q ss_pred ---HHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCC
Q 024790 82 ---KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 126 (262)
Q Consensus 82 ---~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~ 126 (262)
++++++.++|+++..++.....+..++++|.||+|+.|||.+..+
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 688999999999887665544445678899999999999997654
No 57
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.74 E-value=5.1e-17 Score=114.92 Aligned_cols=115 Identities=23% Similarity=0.202 Sum_probs=84.2
Q ss_pred CCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEe-
Q 024790 129 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT- 207 (262)
Q Consensus 129 ~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v- 207 (262)
.++.|+.|.|+|++++++||+++|||++..... ...++........+.+.+.. ...++..|++|.|
T Consensus 3 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~hi~~~v~ 69 (121)
T cd07266 3 LRLGHVELRVTDLEKSREFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTK-------APVAGLGHIAFRVR 69 (121)
T ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEee-------CCCCceeEEEEECC
Confidence 468999999999999999999999999865421 12333321112334444432 1235788999998
Q ss_pred --cCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccc
Q 024790 208 --DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 208 --~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 256 (262)
+|+++++++++++|+++...|.....+.++.+|+.||+||.||++...+
T Consensus 70 ~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~~ 120 (121)
T cd07266 70 SEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEMD 120 (121)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEeccc
Confidence 5899999999999999987654444443478999999999999997654
No 58
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.74 E-value=9.9e-17 Score=116.21 Aligned_cols=116 Identities=22% Similarity=0.295 Sum_probs=85.2
Q ss_pred CCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEec
Q 024790 129 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 208 (262)
Q Consensus 129 ~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~ 208 (262)
.++.|+.|.|+|++++++||+++|||++..... ...++..+ +..+.+.............+..|++|.++
T Consensus 3 ~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~----g~~l~l~~~~~~~~~~~~~~~~hiaf~v~ 72 (139)
T PRK04101 3 KGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN----GLWIALNEEKDIPRNEIHQSYTHIAFSIE 72 (139)
T ss_pred CcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC----CeEEEeeccCCCCCccCCCCeeEEEEEec
Confidence 468999999999999999999999999875421 22333322 24454443221111122346789999987
Q ss_pred --CHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEecc
Q 024790 209 --DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 255 (262)
Q Consensus 209 --dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 255 (262)
|+++++++++++|+++..+|...+++ ++.+|++||+||.|||.+..
T Consensus 73 ~~dv~~~~~~l~~~G~~i~~~~~~~~~~-~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 73 EEDFDHWYQRLKENDVNILPGRERDERD-KKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred HHHHHHHHHHHHHCCceEcCCccccCCC-ceEEEEECCCCCEEEEEeCC
Confidence 99999999999999998777665543 48999999999999998743
No 59
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.74 E-value=2.1e-16 Score=110.47 Aligned_cols=114 Identities=25% Similarity=0.247 Sum_probs=82.8
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCCH
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDV 80 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d~ 80 (262)
++||+|.|+|++++++||+++||+++..... +.. ..+++..++. . ...+....... .......|++|.++|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~--~~~~~~~~~~-~--~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGG--DYAVFSTGGG-A--VGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCC--ceEEEEeCCc-c--EEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 5799999999999999999999999876542 111 2334444321 1 22232221111 2234566899999999
Q ss_pred HHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024790 81 AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 123 (262)
Q Consensus 81 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~ 123 (262)
++++++|+++|+++..+|...+ +..+.+++.||+||.|+|++
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIP-GVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccC-CcEEEEEEECCCCCEEEeEC
Confidence 9999999999999988876655 35688999999999999974
No 60
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.74 E-value=2.4e-16 Score=116.25 Aligned_cols=117 Identities=20% Similarity=0.223 Sum_probs=83.7
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCC-CCCCCCceeEEEEeCC
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK-YDIGTGFGHFGIAVDD 79 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~i~~~v~d 79 (262)
|+||+|.|+|++++.+||+++|||++..+.. . ...+...+. ..+..+.+........ .....++.|++|.|+|
T Consensus 2 l~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~d 75 (157)
T cd08347 2 LHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVPD 75 (157)
T ss_pred cccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECCC
Confidence 6899999999999999999999999876543 1 233333221 1223556655322221 1223578899999998
Q ss_pred ---HHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCC
Q 024790 80 ---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 126 (262)
Q Consensus 80 ---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~ 126 (262)
+++++++|+++|+.+. .+. ..+..+++||.||+|+.|||+...+
T Consensus 76 ~~dvd~~~~~L~~~Gv~~~-~~~--~~~~~~s~yf~DPdG~~iEl~~~~~ 122 (157)
T cd08347 76 DEELEAWKERLEALGLPVS-GIV--DRFYFKSLYFREPGGILFEIATDGP 122 (157)
T ss_pred HHHHHHHHHHHHHCCCCcc-ccc--ccccEEEEEEECCCCcEEEEEECCC
Confidence 8999999999999764 222 2235678999999999999998753
No 61
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=99.73 E-value=1.5e-16 Score=125.74 Aligned_cols=222 Identities=20% Similarity=0.241 Sum_probs=146.9
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCC--CCCCCceeEEEEeC
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKY--DIGTGFGHFGIAVD 78 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~i~~~v~ 78 (262)
+++|.+.|.|.+.+..=|-..|||+....-... .....+-| ...+++.-...+....+ .+|++.+.++|.|+
T Consensus 23 feFvEf~~~d~~~~l~~l~~~lGF~~~~~Hrsk----~v~l~rQG--dinlvvn~~~~s~a~~f~~~Hgps~~a~a~~V~ 96 (363)
T COG3185 23 FEFVEFAVPDPQEALGALLGQLGFTAVAKHRSK----AVTLYRQG--DINLVVNAEPDSFAAEFLDKHGPSACAMAFRVD 96 (363)
T ss_pred eeEEEEecCCHHHHHHHHHHHhCcccccccccc----ceeEEEeC--CEEEEEcCCCcchhhHHHHhcCCchheeEEeeC
Confidence 478999999995444444455999887543211 12222222 22222221111111121 26788899999999
Q ss_pred CHHHHHHHHHHcCCeeecCCcc-----c---CCCCeEEEEEECCCC--CEE--EEEEc--CCC-----CCCceeEEeeec
Q 024790 79 DVAKTVELIKAKGGKVTREPGP-----V---KGGNTVIAFIEDPDG--YKF--ELLER--GPT-----PEPLCQVMLRVG 139 (262)
Q Consensus 79 d~~~~~~~l~~~G~~~~~~~~~-----~---~~~~~~~~~~~DP~G--~~i--el~~~--~~~-----~~~~~~v~l~v~ 139 (262)
|.++++++.++.|++....+.. . ..-++..+||.|..| -.| ++... ... ...|+|++++|+
T Consensus 97 DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~~~siyd~~f~~~~~~~~~~~~g~~~IDHl~~nv~ 176 (363)
T COG3185 97 DAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYGGRSIYDVEFEPNGAQGASGGVGLTAIDHLTHNVK 176 (363)
T ss_pred CHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCCCCcccccccccccccccccccCceeechhhhhcc
Confidence 9999999999999955433221 1 112456788888883 222 11111 111 137999999997
Q ss_pred --ChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcc-------cccCCceeEEEEEecCH
Q 024790 140 --DLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD-------YDKGNAYAQIAIGTDDV 210 (262)
Q Consensus 140 --d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~i~~~v~dl 210 (262)
.++++..||+++|||+.....+.++....+..-.+.+.++...+.|....+..+ ...|.|++||+|.++|+
T Consensus 177 ~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~G~GIQHIA~~T~dI 256 (363)
T COG3185 177 AGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYRGEGIQHIAFGTDDI 256 (363)
T ss_pred hhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhCCCcceEEEecccHH
Confidence 999999999999999998877665544334444444455667777776544433 33578999999999999
Q ss_pred HHHHHHHHHhCCeeecCC
Q 024790 211 YKTAEAIKLFGGKVTREP 228 (262)
Q Consensus 211 ~~~~~~l~~~g~~~~~~~ 228 (262)
-+++++++++|++++..|
T Consensus 257 ~~tv~~lr~rG~~fl~ip 274 (363)
T COG3185 257 YATVAALRERGVKFLPIP 274 (363)
T ss_pred HHHHHHHHHcCCccCCCc
Confidence 999999999999999877
No 62
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.73 E-value=1.8e-16 Score=115.34 Aligned_cols=116 Identities=15% Similarity=0.293 Sum_probs=86.5
Q ss_pred CCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEec
Q 024790 129 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 208 (262)
Q Consensus 129 ~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~ 208 (262)
.++.|+.|.|+|++++++||+++|||++..... + ...++..+. .+..+.+... ..+++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~--~~~~~~l~~~-------~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNS--DHHSIAIARG-------PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCC--CcceEEEccC-------CCCceEEEEEECC
Confidence 478999999999999999999999999864421 1 223444332 2344555321 2357889999999
Q ss_pred CHHHHH---HHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccccc
Q 024790 209 DVYKTA---EAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFL 258 (262)
Q Consensus 209 dl~~~~---~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~~~ 258 (262)
|++++. ++|+++|+++..+|.....+..+++|++||+||.|||++.....
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~~~ 121 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELEQV 121 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCceEE
Confidence 888775 89999999998776555444457789999999999999876543
No 63
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.73 E-value=1e-16 Score=113.17 Aligned_cols=113 Identities=16% Similarity=0.253 Sum_probs=80.4
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEee----ecCCcccccCCceeEEEE
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTY----NYGVTDYDKGNAYAQIAI 205 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~i~~ 205 (262)
++.++.|.|+|++++.+||+++|||++..... . . ..+ . + ...+.+.. .....+...+.+..|++|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~--~-~~~-~--~---~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E--N-VTF-E--G---GFALQEGYSWLEGISKADIIEKSNNFELYF 70 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c--e-EEE-e--c---cceeccchhhhccCCcccccccCCceEEEE
Confidence 46789999999999999999999999864321 1 1 111 1 0 01111110 000111223345689999
Q ss_pred EecCHHHHHHHHHHhCC-eeecCCccCCCCcceEEEEeCCCCcEEEEEec
Q 024790 206 GTDDVYKTAEAIKLFGG-KVTREPGPLPGINTKITACLDPDGWKTVFVDN 254 (262)
Q Consensus 206 ~v~dl~~~~~~l~~~g~-~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 254 (262)
.|+|+++++++|+++|+ ++..+|...++| .+.++++|||||.|||.+.
T Consensus 71 ~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g-~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 71 EEEDFDAFLDKLKRYDNIEYVHPIKEHPWG-QRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EehhhHHHHHHHHhcCCcEEecCcccCCCc-cEEEEEECCCCCEEEEecc
Confidence 99999999999999986 788888888876 3899999999999999875
No 64
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.73 E-value=1.8e-17 Score=118.10 Aligned_cols=119 Identities=29% Similarity=0.415 Sum_probs=82.1
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecC--CCCcceeeEeeecCCCceeEEEeeecCCCCCCCC---CCCceeEEE
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDI--PEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDI---GTGFGHFGI 75 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~i~~ 75 (262)
|+||+|.|+|++++.+||+++|||++...... ........++..+.. .+.+............. ..+..|+++
T Consensus 2 l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 79 (128)
T PF00903_consen 2 LDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEG--HIELFLNPSPPPRASGHSFPEHGGHHIAF 79 (128)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSS--CEEEEEEESSSSSSEEEHHHSHTSEEEEE
T ss_pred eEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccccc--ceeeeeeccccccccccccccccceeEEE
Confidence 68999999999999999999999999987652 222333444444433 33333333222111111 013455666
Q ss_pred EeC---CHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEE
Q 024790 76 AVD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 121 (262)
Q Consensus 76 ~v~---d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel 121 (262)
.+. |+++++++|+++|+++..++.....+...++|+.||+|+.|||
T Consensus 80 ~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 80 LAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 555 6888999999999999888777666666767899999999997
No 65
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.73 E-value=2.3e-16 Score=113.17 Aligned_cols=118 Identities=18% Similarity=0.239 Sum_probs=88.2
Q ss_pred eeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecCHH
Q 024790 132 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVY 211 (262)
Q Consensus 132 ~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~dl~ 211 (262)
+||.|.|+|++++++||+++||+++......+ +.....++..++ .+..+.+.... ..++..|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDE--DHHDLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCC--CcceEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 58999999999999999999999987654322 222334444332 23445554311 1568899999999874
Q ss_pred ---HHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccccc
Q 024790 212 ---KTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFL 258 (262)
Q Consensus 212 ---~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~~~ 258 (262)
+++++++++|+++...|...+.+..++++++||+||.|||.+.....
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~~ 121 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMYRI 121 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCccc
Confidence 68899999999999887766655567899999999999999876543
No 66
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=3.1e-16 Score=110.23 Aligned_cols=116 Identities=27% Similarity=0.348 Sum_probs=83.2
Q ss_pred eEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCc-eeEEEeeecCCCC--CCCCCCCceeEEEEeCC
Q 024790 3 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDS-HFVIELTYNYGVD--KYDIGTGFGHFGIAVDD 79 (262)
Q Consensus 3 hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~~~~~i~~~v~d 79 (262)
||+|.|+|++++.+||+++|||++..+..... . ..++.+..... ...+.+....... ....+.+..|++|.|+|
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 77 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-G--FRWVTVAPPGSPETSLVLAPPANPAAMSGLQPGGTPGLVLATDD 77 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-C--cEEEEEeCCCCCeeEEEEeCCCCccccccccCCCceEEEEEehH
Confidence 89999999999999999999999987653212 2 22333322211 3344544332221 11234577799999999
Q ss_pred HHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024790 80 VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 123 (262)
Q Consensus 80 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~ 123 (262)
+++++++|+++|+++..++.... ..+.+++.||+|++|+|++
T Consensus 78 i~~~~~~l~~~g~~~~~~~~~~~--~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 78 IDATYEELKARGVEFSEEPREMP--YGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHHhCCCEEeeccccCC--CceEEEEECCCCCEEEEeC
Confidence 99999999999999987774333 4578999999999999974
No 67
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=4e-16 Score=110.88 Aligned_cols=117 Identities=19% Similarity=0.272 Sum_probs=79.1
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeee---c---CC--CCCCCCCCCcee
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTY---N---YG--VDKYDIGTGFGH 72 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~---~~--~~~~~~~~~~~~ 72 (262)
|.|+.|.|+|++++.+||+++|||++..... .+.+ ..+..+ ...+.+.... . .. ........+..+
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDY--GELETG--ETTLAFASHDLAESNLKGGFVKADPAQPPAGFE 74 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcE--EEecCC--cEEEEEEcccccccccccCccCCccccCCCcEE
Confidence 6799999999999999999999999865432 1111 111111 1111111110 0 00 011112223458
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEc
Q 024790 73 FGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 73 i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 124 (262)
++|.|+|+++++++++++|+++..++...++ +.+.+++.||+||.|++.++
T Consensus 75 ~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 75 IAFVTDDVAAAFARAVEAGAVLVSEPKEKPW-GQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEcCCHHHHHHHHHHcCCEeccCCccCCC-CcEEEEEECCCCCEEEEecC
Confidence 9999999999999999999999888776665 45678899999999999864
No 68
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.72 E-value=1e-16 Score=111.72 Aligned_cols=113 Identities=25% Similarity=0.217 Sum_probs=82.2
Q ss_pred ceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcc-cccCCceeEEEEEecC
Q 024790 131 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD-YDKGNAYAQIAIGTDD 209 (262)
Q Consensus 131 ~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~i~~~v~d 209 (262)
|+|+.|.|+|++++++||+++|||++......+ ....++..++ ...+.+........ .....+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGD---GPQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCC---CcEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 689999999999999999999999986543322 1223344322 13455554332211 1234577899999999
Q ss_pred HHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEE
Q 024790 210 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 251 (262)
Q Consensus 210 l~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~ 251 (262)
+++++++++++|+++..++.. ..+ .+.+|++||+|+.|||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~-~~~-~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP-GDG-VRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC-CCC-ccEEEEECCCCCEEeC
Confidence 999999999999999987754 222 4789999999999996
No 69
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.72 E-value=4.6e-16 Score=115.96 Aligned_cols=118 Identities=20% Similarity=0.324 Sum_probs=83.2
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCC-
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD- 79 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d- 79 (262)
|+||+|.|+|++++++||+++|||++........+.....|+....... .+.+..... ....++.|++|.|+|
T Consensus 7 i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~l~~~~~----~~~~~~~hiaf~v~~~ 80 (166)
T cd09014 7 LDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVH--DVAYTRDPA----GARGRLHHLAYALDTR 80 (166)
T ss_pred eeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCce--eEEEecCCC----CCCCCceEEEEECCCH
Confidence 5899999999999999999999999876543222222345665543222 233322111 122467899999996
Q ss_pred --HHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEc
Q 024790 80 --VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 80 --~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 124 (262)
+++++++|+++|+++...|.....+...++|+.||+|++|||+..
T Consensus 81 ~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 81 EDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred HHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 557889999999998656554443345578999999999999976
No 70
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.72 E-value=1.6e-16 Score=113.85 Aligned_cols=114 Identities=22% Similarity=0.262 Sum_probs=81.6
Q ss_pred ceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEec--
Q 024790 131 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD-- 208 (262)
Q Consensus 131 ~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~-- 208 (262)
|+||.|.|+|++++++||+++|||++..... . . .++..+ +..+.+.............++.|++|.++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~--~--~--~~~~~~----~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE--K--T--AYFTIG----GTWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC--c--c--ceEeeC----ceEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 6899999999999999999999999864321 1 1 223322 24455543322111122347889999987
Q ss_pred CHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEecc
Q 024790 209 DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 255 (262)
Q Consensus 209 dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 255 (262)
|+++++++|+++|+++..++....++ ++.+|++||+||.|||.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~-~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRD-RKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCc-ceEEEEECCCCCEEEEecCc
Confidence 49999999999999987655433332 47899999999999999854
No 71
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.72 E-value=1.5e-16 Score=112.95 Aligned_cols=113 Identities=16% Similarity=0.189 Sum_probs=83.4
Q ss_pred CCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEec
Q 024790 129 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 208 (262)
Q Consensus 129 ~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~ 208 (262)
.++.|++|.|+|++++.+||+++|||++..+.. ...++..+. .++.+.+... .++..|++|.|+
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~--~~~~i~l~~~--------~~~~~~iaf~v~ 68 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDA--RDHTLVYIEG--------DPAEQASGFELR 68 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCC--ccEEEEEEeC--------CCceEEEEEEEC
Confidence 468999999999999999999999999865421 123454322 3455555421 145679999997
Q ss_pred C---HHHHHHHHHHhCCeeecCCccCC--CCcceEEEEeCCCCcEEEEEecccc
Q 024790 209 D---VYKTAEAIKLFGGKVTREPGPLP--GINTKITACLDPDGWKTVFVDNVDF 257 (262)
Q Consensus 209 d---l~~~~~~l~~~g~~~~~~~~~~~--~~~~~~~~~~DP~G~~ie~~~~~~~ 257 (262)
+ +++++++|+++|+++..++.... .+.++++|++|||||.||++.++..
T Consensus 69 ~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~~~ 122 (124)
T cd08361 69 DDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRPSH 122 (124)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEeeec
Confidence 5 99999999999999877653211 2224678999999999999987754
No 72
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=2.1e-16 Score=111.59 Aligned_cols=112 Identities=18% Similarity=0.212 Sum_probs=78.3
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeee----cCCCCCCCCCCCceeEEEE
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTY----NYGVDKYDIGTGFGHFGIA 76 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~i~~~ 76 (262)
+.|+.|.|+|++++.+||+++||+++....+ . ...+. +. +.+.+.. .....+...+.+..|++|.
T Consensus 3 ~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~----~~~~~-~~----~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (120)
T cd09011 3 FKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E----NVTFE-GG----FALQEGYSWLEGISKADIIEKSNNFELYFE 71 (120)
T ss_pred EEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c----eEEEe-cc----ceeccchhhhccCCcccccccCCceEEEEE
Confidence 4789999999999999999999999864321 1 11111 11 1111110 1111112233455789999
Q ss_pred eCCHHHHHHHHHHcCC-eeecCCcccCCCCeEEEEEECCCCCEEEEEEc
Q 024790 77 VDDVAKTVELIKAKGG-KVTREPGPVKGGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 77 v~d~~~~~~~l~~~G~-~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 124 (262)
|+|+++++++|+++|+ ++..+|...++ +.+.++|.|||||.|||.++
T Consensus 72 v~dvd~~~~~l~~~g~~~~~~~~~~~~~-g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 72 EEDFDAFLDKLKRYDNIEYVHPIKEHPW-GQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred ehhhHHHHHHHHhcCCcEEecCcccCCC-ccEEEEEECCCCCEEEEecc
Confidence 9999999999999986 67777777665 56789999999999999875
No 73
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.72 E-value=2.7e-16 Score=117.17 Aligned_cols=120 Identities=20% Similarity=0.167 Sum_probs=85.2
Q ss_pred CCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEec
Q 024790 129 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 208 (262)
Q Consensus 129 ~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~ 208 (262)
.+++|+.|.|+|++++++||+++|||++......+.+.....++.... ....+.+.... .....++.|++|.|+
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~~~----~~~~~~~~hiaf~v~ 78 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSN--KVHDVAYTRDP----AGARGRLHHLAYALD 78 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCC--CceeEEEecCC----CCCCCCceEEEEECC
Confidence 468999999999999999999999999876543332222233444321 23344443211 112346899999998
Q ss_pred C---HHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEec
Q 024790 209 D---VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 254 (262)
Q Consensus 209 d---l~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 254 (262)
| +++++++|+++|+++..+|..+..+...++|++||+||.|||+..
T Consensus 79 ~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 79 TREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 5 457889999999998877766554444578999999999999987
No 74
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.72 E-value=1.9e-16 Score=112.03 Aligned_cols=112 Identities=18% Similarity=0.166 Sum_probs=81.6
Q ss_pred CCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEec
Q 024790 129 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 208 (262)
Q Consensus 129 ~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~ 208 (262)
.+++|+.|.|+|++++.+||+++|||++..+.. ...++...+...+..+.+.. ...++..|++|.+.
T Consensus 5 ~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~-------~~~~~~~h~af~v~ 71 (121)
T cd09013 5 AHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTE-------SPEAGLGHIAWRAS 71 (121)
T ss_pred cEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEee-------CCCCceEEEEEEcC
Confidence 478999999999999999999999999876532 12333322222334454432 12357899999996
Q ss_pred ---CHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEecc
Q 024790 209 ---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 255 (262)
Q Consensus 209 ---dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 255 (262)
+++++.++++++|+++...+....+ ++.+|++||+||.||++...
T Consensus 72 ~~~~v~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 72 SPEALERRVAALEASGLGIGWIEGDPGH--GKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred CHHHHHHHHHHHHHcCCccccccCCCCC--cceEEEECCCCCEEEEEEec
Confidence 6889999999999997543333333 46789999999999998754
No 75
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=2.7e-16 Score=111.79 Aligned_cols=115 Identities=23% Similarity=0.285 Sum_probs=81.6
Q ss_pred ceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeec--------C--CcccccCCce
Q 024790 131 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNY--------G--VTDYDKGNAY 200 (262)
Q Consensus 131 ~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~--~~~~~~~~~~ 200 (262)
+.|+.|.|+|++++++||+++|||++..... +..+ ..+.. +...+.+.... . .......++.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDY--GELET----GETTLAFASHDLAESNLKGGFVKADPAQPPAG 72 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcE--EEecC----CcEEEEEEcccccccccccCccCCccccCCCc
Confidence 4689999999999999999999999865322 1112 11221 11222222110 0 0011123455
Q ss_pred eEEEEEecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEec
Q 024790 201 AQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 254 (262)
Q Consensus 201 ~~i~~~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 254 (262)
.+++|.|+|+++++++++++|+++..+|...++|. +.++++||+||.|+|+++
T Consensus 73 ~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~-~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVEAGAVLVSEPKEKPWGQ-TVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEEEcCCHHHHHHHHHHcCCEeccCCccCCCCc-EEEEEECCCCCEEEEecC
Confidence 79999999999999999999999998888888764 788999999999999874
No 76
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.72 E-value=2.1e-16 Score=110.14 Aligned_cols=113 Identities=28% Similarity=0.354 Sum_probs=82.3
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCC-CCCCCCceeEEEEeCC
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK-YDIGTGFGHFGIAVDD 79 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~i~~~v~d 79 (262)
|+|++|.|+|++++.+||+++||+++..+.... ....++..++. ..+.+........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~---~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDG---PQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCC---cEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 689999999999999999999999886543211 13456655443 1334443222111 1234567899999999
Q ss_pred HHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEE
Q 024790 80 VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 121 (262)
Q Consensus 80 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel 121 (262)
+++++++++++|+++..++.. .. +.+.+++.||+|+.+||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~-~~-~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP-GD-GVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC-CC-CccEEEEECCCCCEEeC
Confidence 999999999999998876644 22 45778999999999986
No 77
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.72 E-value=2.8e-16 Score=110.73 Aligned_cols=112 Identities=20% Similarity=0.173 Sum_probs=80.7
Q ss_pred eEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCc----ccccCCceeEEEEEec
Q 024790 133 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT----DYDKGNAYAQIAIGTD 208 (262)
Q Consensus 133 ~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~i~~~v~ 208 (262)
+..|.|+|++++++||+++|||++..... ....+...+ ....+.+....... .........|++|.|+
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~--~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD------WYVSLRSPD--GGVELAFMLPGHETVPAAQYQFQGQGLILNFEVD 75 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC------cEEEEecCC--CceEEEEccCCCCCCcchhcccCCceEEEEEEEC
Confidence 57899999999999999999999875421 112232221 22444444321111 1112234459999999
Q ss_pred CHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEe
Q 024790 209 DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 253 (262)
Q Consensus 209 dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 253 (262)
|+++++++++++|+++..+|...++| .+.++++||+||.|||+|
T Consensus 76 did~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 76 DVDAEYERLKAEGLPIVLPLRDEPWG-QRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CHHHHHHHHHhcCCCeeeccccCCCc-ceEEEEECCCCCEEEEEC
Confidence 99999999999999998888777775 488999999999999986
No 78
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.71 E-value=3.4e-16 Score=111.66 Aligned_cols=118 Identities=25% Similarity=0.362 Sum_probs=86.1
Q ss_pred ceeEEeeecChhhhHHHHHHhcCCeeeeeccCc-CccceeeeeccCCCCcceEEEEeeecCCcc------cccCCceeEE
Q 024790 131 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNP-EYKYTIAMMGYGPEDKNVVLELTYNYGVTD------YDKGNAYAQI 203 (262)
Q Consensus 131 ~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~i 203 (262)
++||.|.|+|++++++||+++|||++....... +......++.. +...+++........ ...+++..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~----~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGL----GNVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEc----CCEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999997654432 22334455553 245666665432211 1345788999
Q ss_pred EEEecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeC-CC--CcEEEEEe
Q 024790 204 AIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLD-PD--GWKTVFVD 253 (262)
Q Consensus 204 ~~~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~D-P~--G~~ie~~~ 253 (262)
+|.|+|+++++++++++|+++..+|.....+. +.+++.| |+ |+.|||+|
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g-~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAGG-KRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCCC-CEEEEEecCCCceEEEEecC
Confidence 99999999999999999999998876444433 4455555 44 99999975
No 79
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.71 E-value=2.3e-16 Score=112.21 Aligned_cols=120 Identities=19% Similarity=0.221 Sum_probs=83.4
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCc-cceeeeeccCCCCcceEEEEeeecCCcc--cccCCceeEEEEE
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEY-KYTIAMMGYGPEDKNVVLELTYNYGVTD--YDKGNAYAQIAIG 206 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~i~~~ 206 (262)
++.|+.|.|.|++++++||+++|||++.......+. .....++.......+..++|........ .....+..|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 478999999999999999999999998766432221 1112233222112345666665433221 1123467899999
Q ss_pred ec---CHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEE
Q 024790 207 TD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 252 (262)
Q Consensus 207 v~---dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~ 252 (262)
|. |+++++++++++|+++..++. ..+ ++.+|++||+||+|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~-~~~--~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVD-HFG--ERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEe-ecc--eEEEEEECCCCCEEEeC
Confidence 98 579999999999999876443 222 58899999999999985
No 80
>PRK06724 hypothetical protein; Provisional
Probab=99.71 E-value=2.4e-16 Score=112.09 Aligned_cols=113 Identities=17% Similarity=0.188 Sum_probs=78.8
Q ss_pred CCCceeEEeeecChhhhHHHHHHhc---CCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEE
Q 024790 128 PEPLCQVMLRVGDLDRSINFYEQAF---GMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIA 204 (262)
Q Consensus 128 ~~~~~~v~l~v~d~~~~~~FY~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~ 204 (262)
..+++||.|.|+|++++++||+++| ||+...... + . . +...+.+..... .....++..|++
T Consensus 5 ~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~---------~-~--~--g~~~l~l~~~~~--~~~~~~g~~h~a 68 (128)
T PRK06724 5 RAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVA---------Y-S--T--GESEIYFKEVDE--EIVRTLGPRHIC 68 (128)
T ss_pred CcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEe---------e-e--C--CCeeEEEecCCc--cccCCCCceeEE
Confidence 3579999999999999999999966 666532111 1 0 0 112222221111 011234778999
Q ss_pred EEe---cCHHHHHHHHHHhCCeeecCCccCCC-Ccc-eEEEEeCCCCcEEEEEeccc
Q 024790 205 IGT---DDVYKTAEAIKLFGGKVTREPGPLPG-INT-KITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 205 ~~v---~dl~~~~~~l~~~g~~~~~~~~~~~~-~~~-~~~~~~DP~G~~ie~~~~~~ 256 (262)
|.| +|++++.++|+++|+++..+|...+. +.+ +.+||+|||||.|||...++
T Consensus 69 f~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~~ 125 (128)
T PRK06724 69 YQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTPN 125 (128)
T ss_pred EecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCCC
Confidence 997 78999999999999999888865442 223 77899999999999987754
No 81
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.71 E-value=4.2e-16 Score=110.62 Aligned_cols=117 Identities=20% Similarity=0.330 Sum_probs=84.8
Q ss_pred CCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCC---cccccCCceeEEEE
Q 024790 129 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGV---TDYDKGNAYAQIAI 205 (262)
Q Consensus 129 ~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~i~~ 205 (262)
.+++|+.|.|+|++++++||+++|||+........ .+ ..+..+ ...+.+...... ......++..|++|
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~--~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~hi~~ 73 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GR--KALRFG----SQKINLHPVGGEFEPAAGSPGPGSDDLCL 73 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeecccccC--Cc--eEEEeC----CEEEEEecCCCccCcCccCCCCCCceEEE
Confidence 36899999999999999999999999987653211 12 223322 134555442221 11223468899999
Q ss_pred EecC-HHHHHHHHHHhCCeeecCCccCCC--CcceEEEEeCCCCcEEEEEe
Q 024790 206 GTDD-VYKTAEAIKLFGGKVTREPGPLPG--INTKITACLDPDGWKTVFVD 253 (262)
Q Consensus 206 ~v~d-l~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~DP~G~~ie~~~ 253 (262)
.+++ +++++++|+++|+++..+|....+ +.++.+|++||+||.||+.+
T Consensus 74 ~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 74 ITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 9974 999999999999999887765432 23478999999999999986
No 82
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.71 E-value=6.8e-16 Score=109.17 Aligned_cols=116 Identities=22% Similarity=0.226 Sum_probs=86.0
Q ss_pred EEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCc--ccccCCceeEEEEEecCHH
Q 024790 134 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT--DYDKGNAYAQIAIGTDDVY 211 (262)
Q Consensus 134 v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~i~~~v~dl~ 211 (262)
..|.|+|++++.+||+++||+.+......+++......+..+ ...+.+....+.. +.....+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIG----DSVLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEEC----CEEEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 468899999999999999999988765433333333444432 2345555322211 1123457789999999999
Q ss_pred HHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEec
Q 024790 212 KTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 254 (262)
Q Consensus 212 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 254 (262)
++++++.+.|+++..+|...+++ .+.++++||+||.|+|.|.
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFWG-DRYGGVRDPFGHRWWIATH 122 (122)
T ss_pred HHHHHHHHCCCeEecCccccccc-ceEEEEECCCCCEEEEecC
Confidence 99999999999999888766665 4889999999999999873
No 83
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.71 E-value=5.9e-16 Score=112.59 Aligned_cols=111 Identities=23% Similarity=0.420 Sum_probs=82.0
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCCH
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDV 80 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d~ 80 (262)
|+||.|.|+|++++++||+++|||++..... . ...|+..+.... .+.+... ...++.|++|.|+|+
T Consensus 5 l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~l~~~~~~~--~~~l~~~-------~~~~~~hiaf~v~d~ 70 (144)
T cd07239 5 ISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG---D--QMAFLRCNSDHH--SIAIARG-------PHPSLNHVAFEMPSI 70 (144)
T ss_pred eeEEEEECCCHHHHHHHHHhcCCCEEEEeeC---C--eEEEEECCCCcc--eEEEccC-------CCCceEEEEEECCCH
Confidence 5899999999999999999999999865422 1 245666554322 2333221 124788999999987
Q ss_pred HHHH---HHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcC
Q 024790 81 AKTV---ELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 125 (262)
Q Consensus 81 ~~~~---~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 125 (262)
+++. ++|+++|+++..++.....+..+++||.||+||.|||++..
T Consensus 71 ~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 71 DEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred HHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCc
Confidence 7764 89999999987665443334556789999999999999764
No 84
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=8.1e-16 Score=109.33 Aligned_cols=115 Identities=25% Similarity=0.419 Sum_probs=83.4
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCC-CCCCCCCCceeEEEEeCC
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV-DKYDIGTGFGHFGIAVDD 79 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~i~~~v~d 79 (262)
|+||.|.|+|++++++||+++|||++....+ ..+++..++ ....+.+...... .......++.|++|.|++
T Consensus 3 i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v~~ 74 (125)
T cd07255 3 IGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILLPS 74 (125)
T ss_pred EEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEECCC
Confidence 5899999999999999999999999986632 244554443 1233444433222 122344578899999984
Q ss_pred ---HHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCC
Q 024790 80 ---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 126 (262)
Q Consensus 80 ---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~ 126 (262)
+++++++|.++|+++..+. .. +..+.+||.||+||++||....+
T Consensus 75 ~~~v~~~~~~l~~~g~~~~~~~-~~--~~~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 75 RADLAAALRRLIELGIPLVGAS-DH--LVSEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred HHHHHHHHHHHHHcCCceeccc-cc--cceeEEEEECCCCCEEEEEEecC
Confidence 8899999999999875432 22 24477899999999999997654
No 85
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.71 E-value=3.3e-16 Score=110.59 Aligned_cols=112 Identities=14% Similarity=0.140 Sum_probs=82.4
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEec-
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD- 208 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~- 208 (262)
+++||+|.|+|++++++||+++|||++..... . ...++..+ ..+..+.+... ..++..|++|.+.
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~--~~~~~~~l~~~-------~~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPE---D--GALYLRMD--DRAWRIAVHPG-------EADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCC---C--CeEEEEcc--CCceEEEEEeC-------CCCceeEEEEEECC
Confidence 68999999999999999999999999864321 1 12334432 23556666421 1356789999996
Q ss_pred --CHHHHHHHHHHhCCeeecCCccC--CCCcceEEEEeCCCCcEEEEEecc
Q 024790 209 --DVYKTAEAIKLFGGKVTREPGPL--PGINTKITACLDPDGWKTVFVDNV 255 (262)
Q Consensus 209 --dl~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~~~DP~G~~ie~~~~~ 255 (262)
|+++++++|+++|+++...|... ..+.++.+|++|||||.|||+...
T Consensus 68 ~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 68 EAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 58999999999999998655322 222247899999999999998754
No 86
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.71 E-value=5.3e-16 Score=109.53 Aligned_cols=111 Identities=20% Similarity=0.270 Sum_probs=81.2
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCC-
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD- 79 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d- 79 (262)
|.||+|.|+|+++|.+||+++|||++..+.. . ...++..++. +..+.+... ...++.|++|.+++
T Consensus 3 l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~---~~~~~~~~~~--~~~~~l~~~-------~~~~~~~~~f~v~~~ 68 (120)
T cd07252 3 LGYLGVESSDLDAWRRFATDVLGLQVGDRPE--D---GALYLRMDDR--AWRIAVHPG-------EADDLAYAGWEVADE 68 (120)
T ss_pred ccEEEEEeCCHHHHHHHHHhccCceeccCCC--C---CeEEEEccCC--ceEEEEEeC-------CCCceeEEEEEECCH
Confidence 6899999999999999999999999865421 1 2456655433 333444322 12467789999974
Q ss_pred --HHHHHHHHHHcCCeeecCCcc--cCCCCeEEEEEECCCCCEEEEEEcC
Q 024790 80 --VAKTVELIKAKGGKVTREPGP--VKGGNTVIAFIEDPDGYKFELLERG 125 (262)
Q Consensus 80 --~~~~~~~l~~~G~~~~~~~~~--~~~~~~~~~~~~DP~G~~iel~~~~ 125 (262)
+++++++|+++|+++...+.. ...+..+.++|.|||||.||++...
T Consensus 69 ~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 69 AALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 889999999999998754422 1234557899999999999998653
No 87
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.71 E-value=4.1e-16 Score=111.20 Aligned_cols=118 Identities=31% Similarity=0.497 Sum_probs=84.4
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCC-CCcceeeEeeecCCCceeEEEeeecCCC-CC-----CCCCCCceeE
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIP-EEKYTNAFLGYGPEDSHFVIELTYNYGV-DK-----YDIGTGFGHF 73 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~-----~~~~~~~~~i 73 (262)
|+||+|.|+|++++.+||+++|||++....... .......++..+ ...+++..+... .. ...+.+..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 689999999999999999999999997764432 223345555543 234555543221 11 1246788999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCC---CCEEEEEE
Q 024790 74 GIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPD---GYKFELLE 123 (262)
Q Consensus 74 ~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~---G~~iel~~ 123 (262)
+|.|+|+++++++++++|+++..++.....++.. +++.||+ |+.|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~-~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKR-VAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCE-EEEEecCCCceEEEEecC
Confidence 9999999999999999999998877544444444 4455554 99999974
No 88
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.71 E-value=8.1e-16 Score=114.12 Aligned_cols=115 Identities=24% Similarity=0.361 Sum_probs=78.6
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCC-
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD- 79 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d- 79 (262)
|+||+|.|+|++++++||+++|||++......+.+.....++..+.... .+.+.. ..+.++.|++|.|+|
T Consensus 4 l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~--~i~l~~-------~~~~~~~Hiaf~v~~~ 74 (161)
T cd07256 4 LDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVH--DTALTG-------GNGPRLHHVAFWVPEP 74 (161)
T ss_pred EEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcc--eEEEec-------CCCCceeEEEEEcCCH
Confidence 5899999999999999999999999875543222222334554332222 223321 123478899999986
Q ss_pred --HHHHHHHHHHcCCee--ecCCcccCCCCeEEEEEECCCCCEEEEEEc
Q 024790 80 --VAKTVELIKAKGGKV--TREPGPVKGGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 80 --~~~~~~~l~~~G~~~--~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 124 (262)
+++++++|+++|+.. ...|.....++..++||.||+||.||++..
T Consensus 75 ~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~ 123 (161)
T cd07256 75 HNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTG 123 (161)
T ss_pred HHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeec
Confidence 777889999999863 223322222245679999999999999954
No 89
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.71 E-value=3.8e-16 Score=110.85 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=79.8
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCC-
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD- 79 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d- 79 (262)
|.||.|.|+|+++|.+||+++|||++..+.. ...|+..+... ..+.+.... .+..|++|.|+|
T Consensus 7 l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~~--~~i~l~~~~--------~~~~~iaf~v~~~ 70 (124)
T cd08361 7 IAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDARD--HTLVYIEGD--------PAEQASGFELRDD 70 (124)
T ss_pred eeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCcc--EEEEEEeCC--------CceEEEEEEECCH
Confidence 5899999999999999999999999865432 24566654322 223343211 245689999986
Q ss_pred --HHHHHHHHHHcCCeeecCCccc--CCCCeEEEEEECCCCCEEEEEEcC
Q 024790 80 --VAKTVELIKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLERG 125 (262)
Q Consensus 80 --~~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~~~DP~G~~iel~~~~ 125 (262)
+++++++|+++|+++...+... ..+..++++|.|||||.||+....
T Consensus 71 ~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 71 DALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred HHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 9999999999999886544321 123566789999999999998653
No 90
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=6.1e-16 Score=109.96 Aligned_cols=116 Identities=23% Similarity=0.311 Sum_probs=85.9
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCc-ccccCCceeEEEEEec
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT-DYDKGNAYAQIAIGTD 208 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~i~~~v~ 208 (262)
+++|+.|.|+|++++++||+++|||++..... ...++...+ ....+.+....... ......+..|++|.|.
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v~ 73 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILLP 73 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEECC
Confidence 57899999999999999999999999986521 123444321 34566665543221 1223467899999996
Q ss_pred ---CHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccc
Q 024790 209 ---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 209 ---dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 256 (262)
++++++++|+++|+++.. +..++. .+.+|++||+||+|||....+
T Consensus 74 ~~~~v~~~~~~l~~~g~~~~~-~~~~~~--~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 74 SRADLAAALRRLIELGIPLVG-ASDHLV--SEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CHHHHHHHHHHHHHcCCceec-cccccc--eeEEEEECCCCCEEEEEEecC
Confidence 589999999999998754 334444 478999999999999998766
No 91
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.71 E-value=8.7e-16 Score=109.66 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=84.9
Q ss_pred CceeEEeeecChhhhHHHHHHhc---CCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcc---cccCCceeEE
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAF---GMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD---YDKGNAYAQI 203 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~i 203 (262)
+++||.+.|+|++++++||+++| ||++..... + ...+... ..+..+.+.......+ ...+.++.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~-~~~~~~~-----~~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D-GRSWRAG-----DGGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c-CceEEec-----CCceEEEEEecccCCCcccccCCcCeeEE
Confidence 57899999999999999999999 999876542 1 1111111 1245666665332221 1234578999
Q ss_pred EEEec---CHHHHHHHHHHhCCeeecCCccC--CCCcceEEEEeCCCCcEEEEEe
Q 024790 204 AIGTD---DVYKTAEAIKLFGGKVTREPGPL--PGINTKITACLDPDGWKTVFVD 253 (262)
Q Consensus 204 ~~~v~---dl~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~~~DP~G~~ie~~~ 253 (262)
+|.|. |+++++++|+++|+.+...+... ..+..+.+|++||+||+|||+.
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 99996 58999999999999999887653 2223578999999999999985
No 92
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.70 E-value=1.5e-15 Score=108.48 Aligned_cols=116 Identities=22% Similarity=0.364 Sum_probs=84.6
Q ss_pred CceEEEEeCCHHHHHHHHHhhc---CcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCC---CCCCCCceeEE
Q 024790 1 MLHVVYRVGDLDRTIKFYTECL---GMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK---YDIGTGFGHFG 74 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~i~ 74 (262)
|+||.|.|+|++++.+||+++| ||++..+.. . ...|... .. ...+.+........ ...+.++.|++
T Consensus 2 i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~---~~~~~~~-~~--~~~i~l~~~~~~~~~~~~~~~~g~~hia 73 (128)
T cd07242 2 IHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D---GRSWRAG-DG--GTYLVLQQADGESAGRHDRRNPGLHHLA 73 (128)
T ss_pred CceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c---CceEEec-CC--ceEEEEEecccCCCcccccCCcCeeEEE
Confidence 6899999999999999999999 999887642 1 1234332 12 23455554332221 12345788999
Q ss_pred EEeCC---HHHHHHHHHHcCCeeecCCccc--CCCCeEEEEEECCCCCEEEEEEc
Q 024790 75 IAVDD---VAKTVELIKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 75 ~~v~d---~~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~~~DP~G~~iel~~~ 124 (262)
|.|+| +++++++|+++|+++..++... ..++.+.+|+.||+||++||+.+
T Consensus 74 ~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 74 FRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 99974 8899999999999998766542 22467889999999999999853
No 93
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.70 E-value=6.8e-16 Score=109.72 Aligned_cols=119 Identities=23% Similarity=0.314 Sum_probs=81.4
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCC-cceeeEeeecCCCceeEEEeeecCCCCC--CCCCCCceeEEEEe
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEE-KYTNAFLGYGPEDSHFVIELTYNYGVDK--YDIGTGFGHFGIAV 77 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~i~~~v 77 (262)
|+||+|.|+|++++++||+++|||++..+....+. .....++..........+++........ .....++.|++|.|
T Consensus 2 i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~v 81 (126)
T cd08346 2 LHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFSV 81 (126)
T ss_pred cccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEEc
Confidence 68999999999999999999999998876532221 1122333322111222455554322211 12334678999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEE
Q 024790 78 DD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 122 (262)
Q Consensus 78 ~d---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~ 122 (262)
+| +++++++++++|+++..++.. ++.+.++|.||+|+.||++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 82 PSEASLDAWRERLRAAGVPVSGVVDH---FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred CCHHHHHHHHHHHHHcCCcccceEee---cceEEEEEECCCCCEEEeC
Confidence 94 699999999999988654322 3568899999999999984
No 94
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.70 E-value=5.2e-16 Score=111.23 Aligned_cols=117 Identities=18% Similarity=0.213 Sum_probs=81.4
Q ss_pred CCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccc-eeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEe
Q 024790 129 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKY-TIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 207 (262)
Q Consensus 129 ~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v 207 (262)
.+++|+.|.|+|++++++||+++|||++..+........ ...+...+ ...+.+.... ....++..|++|.|
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~----~~~~~~~~Hiaf~v 74 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIG----GLWIAIMEGD----SLQERTYNHIAFKI 74 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcC----CeEEEEecCC----CCCCCCceEEEEEc
Confidence 468999999999999999999999998765432211000 00111111 2455554221 11234689999999
Q ss_pred c--CHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEec
Q 024790 208 D--DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 254 (262)
Q Consensus 208 ~--dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 254 (262)
+ |++++.++|+++|+++..++ +...+.++.+|++|||||.|||...
T Consensus 75 ~~~~ld~~~~~l~~~gv~~~~~~-~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 75 SDSDVDEYTERIKALGVEMKPPR-PRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred CHHHHHHHHHHHHHCCCEEecCC-ccccCCceEEEEECCCCCEEEEecC
Confidence 7 79999999999999886443 3333346899999999999999864
No 95
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.70 E-value=8.4e-16 Score=111.22 Aligned_cols=112 Identities=22% Similarity=0.306 Sum_probs=83.1
Q ss_pred ceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCCH-
Q 024790 2 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDV- 80 (262)
Q Consensus 2 ~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d~- 80 (262)
+||.|.|+|++++.+||+++|||++..+.. . ..+|+.......+..+.+.. ....+++|++|.|+|.
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~--~---~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE--D---RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC--C---EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 599999999999999999999999876642 1 35566543222222222211 1245899999999864
Q ss_pred --HHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcC
Q 024790 81 --AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 125 (262)
Q Consensus 81 --~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 125 (262)
++++++|+++|+++...|.....+..+.+||.||+|+.||+....
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~ 115 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGM 115 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCc
Confidence 577999999999987776655545678899999999999998654
No 96
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.70 E-value=5.1e-16 Score=110.08 Aligned_cols=111 Identities=17% Similarity=0.206 Sum_probs=80.9
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEec-
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD- 208 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~- 208 (262)
++.|+.|.|+|++++++||+++|||++.... +.+ ..+..+ .+..+.+... ....+..|++|.++
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~--~~~~~~---~~~~l~~~~~------~~~~~~~h~a~~v~~ 68 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAKPF----GPF--AVVKLD---NGVSLDFAQP------DGEIPPQHYAFLVSE 68 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCE--EEEEcC---CCcEEEEecC------CCCCCcceEEEEeCH
Confidence 5789999999999999999999999986532 112 122221 1244554431 11235689998886
Q ss_pred -CHHHHHHHHHHhCCeeecCCccCC------CCcceEEEEeCCCCcEEEEEecc
Q 024790 209 -DVYKTAEAIKLFGGKVTREPGPLP------GINTKITACLDPDGWKTVFVDNV 255 (262)
Q Consensus 209 -dl~~~~~~l~~~g~~~~~~~~~~~------~~~~~~~~~~DP~G~~ie~~~~~ 255 (262)
|+++++++|+++|+++...|.... .+.++.+|++||+||.|||++++
T Consensus 69 ~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 69 EEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred HHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 799999999999999987764431 22358999999999999999874
No 97
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.70 E-value=5.7e-16 Score=109.52 Aligned_cols=111 Identities=26% Similarity=0.367 Sum_probs=79.9
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeC--
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD-- 78 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~-- 78 (262)
++|+.|.|+|++++++||+++|||++..... ..+++..........+.+... ...+..|++|.|.
T Consensus 5 i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~hi~~~v~~~ 71 (121)
T cd07266 5 LGHVELRVTDLEKSREFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTKA-------PVAGLGHIAFRVRSE 71 (121)
T ss_pred eeEEEEEcCCHHHHHHHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEeeC-------CCCceeEEEEECCCH
Confidence 5899999999999999999999999875432 234444221112222333221 1246789999994
Q ss_pred -CHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEc
Q 024790 79 -DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 79 -d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 124 (262)
|+++++++++++|+++...|.....+..+.+++.||+||.||++..
T Consensus 72 ~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 72 EDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred HHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 7899999999999998765433443455789999999999999864
No 98
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.70 E-value=1.2e-15 Score=109.37 Aligned_cols=115 Identities=21% Similarity=0.233 Sum_probs=80.1
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCc-ceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeC-
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEK-YTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD- 78 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~- 78 (262)
|+||+|.|+|++++++||+++||+.+..+....... ....++..+. . .+.+..... ....++.|++|.|+
T Consensus 5 i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--~--~i~l~~~~~----~~~~~~~Hiaf~v~~ 76 (131)
T cd08364 5 LSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGG--L--WIAIMEGDS----LQERTYNHIAFKISD 76 (131)
T ss_pred EeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCC--e--EEEEecCCC----CCCCCceEEEEEcCH
Confidence 589999999999999999999999887654221100 0111222221 1 344432211 12246889999998
Q ss_pred -CHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEc
Q 024790 79 -DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 79 -d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 124 (262)
+++++.++|+++|+++..+ .+...+.++++||.|||||.|||...
T Consensus 77 ~~ld~~~~~l~~~gv~~~~~-~~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 77 SDVDEYTERIKALGVEMKPP-RPRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred HHHHHHHHHHHHCCCEEecC-CccccCCceEEEEECCCCCEEEEecC
Confidence 7999999999999988643 33334456899999999999999864
No 99
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.70 E-value=8.9e-16 Score=108.16 Aligned_cols=111 Identities=20% Similarity=0.212 Sum_probs=79.3
Q ss_pred eEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCC-----CCCCCCCceeEEEEe
Q 024790 3 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD-----KYDIGTGFGHFGIAV 77 (262)
Q Consensus 3 hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~i~~~v 77 (262)
++.|.|+|+++|.+||+++|||++..... ....+..++. ...+.+....... ....+.++ |++|.|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~~-~~~~~v 74 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD------WYVSLRSPDG--GVELAFMLPGHETVPAAQYQFQGQGL-ILNFEV 74 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC------cEEEEecCCC--ceEEEEccCCCCCCcchhcccCCceE-EEEEEE
Confidence 67899999999999999999999876521 1233333322 2334443221111 11123343 899999
Q ss_pred CCHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024790 78 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 123 (262)
Q Consensus 78 ~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~ 123 (262)
+|++++++++.++|+++..+|...++ +.+.+++.||+|+.|||+|
T Consensus 75 ~did~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 75 DDVDAEYERLKAEGLPIVLPLRDEPW-GQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CCHHHHHHHHHhcCCCeeeccccCCC-cceEEEEECCCCCEEEEEC
Confidence 99999999999999998877766665 4678899999999999975
No 100
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.70 E-value=1.3e-15 Score=108.03 Aligned_cols=115 Identities=28% Similarity=0.440 Sum_probs=82.9
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCC---CCCCCCCCCceeEEEEe
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG---VDKYDIGTGFGHFGIAV 77 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~i~~~v 77 (262)
|+||.|.|+|++++++||+++||+++....+. . ...++..++ . .+++..... ......+.+..|++|.+
T Consensus 4 l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~--~--~~~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~~~~hi~~~~ 75 (125)
T cd07253 4 IDHVVLTVADIEATLDFYTRVLGMEVVRFGEE--V--GRKALRFGS--Q--KINLHPVGGEFEPAAGSPGPGSDDLCLIT 75 (125)
T ss_pred cceEEEEecCHHHHHHHHHHHhCceeeccccc--C--CceEEEeCC--E--EEEEecCCCccCcCccCCCCCCceEEEEe
Confidence 68999999999999999999999998765321 1 123344433 2 344443221 11222446788999999
Q ss_pred CC-HHHHHHHHHHcCCeeecCCcccC--CCCeEEEEEECCCCCEEEEEE
Q 024790 78 DD-VAKTVELIKAKGGKVTREPGPVK--GGNTVIAFIEDPDGYKFELLE 123 (262)
Q Consensus 78 ~d-~~~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~~~DP~G~~iel~~ 123 (262)
++ +++++++|+++|+++..+|.... .+..+.++|.||+|+.||+.+
T Consensus 76 ~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 76 EPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred cccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 85 99999999999999876664432 134578999999999999986
No 101
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.69 E-value=1.1e-15 Score=107.98 Aligned_cols=109 Identities=21% Similarity=0.334 Sum_probs=78.5
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeC--
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD-- 78 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~-- 78 (262)
|+|+.|.|+|++++.+||+++||+++..+.+ ..+++..........+.+... ...++.|++|.++
T Consensus 7 i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af~v~~~ 73 (121)
T cd09013 7 LAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES-------PEAGLGHIAWRASSP 73 (121)
T ss_pred eeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC-------CCCceEEEEEEcCCH
Confidence 6899999999999999999999999886542 244554432212223333321 1347889999998
Q ss_pred -CHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEc
Q 024790 79 -DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 79 -d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 124 (262)
++++++++++++|+++...+.. . +.+..++|.||+||.+|+...
T Consensus 74 ~~v~~~~~~l~~~G~~~~~~~~~-~-~~~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 74 EALERRVAALEASGLGIGWIEGD-P-GHGKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred HHHHHHHHHHHHcCCccccccCC-C-CCcceEEEECCCCCEEEEEEe
Confidence 5888999999999987432211 2 345678999999999999864
No 102
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.69 E-value=4.3e-16 Score=107.78 Aligned_cols=108 Identities=24% Similarity=0.345 Sum_probs=77.2
Q ss_pred eeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecCHHHHHH
Q 024790 136 LRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTAE 215 (262)
Q Consensus 136 l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~dl~~~~~ 215 (262)
|.|+|++++++||+++|||++..... .+....... ........+..... ......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLGF--RFHDGVIEFLQFPD--PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEETE--EEEEEEEEEEEEES--SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEecc--chhhhhHHHccCCc--cccCCCceeEEEEEEcCHHHHHH
Confidence 68999999999999999999987432 122122211 00111222332211 23345688999999999999999
Q ss_pred HHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEE
Q 024790 216 AIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 252 (262)
Q Consensus 216 ~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~ 252 (262)
+++++|++++.+|...+++ .+.+++.||+||.|+|+
T Consensus 73 ~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPWG-QRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETTS-EEEEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCCC-eEEEEEECCCCCEEEeC
Confidence 9999999999988887775 38999999999999985
No 103
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.69 E-value=1.6e-15 Score=107.32 Aligned_cols=117 Identities=20% Similarity=0.205 Sum_probs=81.8
Q ss_pred EEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCC--CCCCCCCceeEEEEeCCHH
Q 024790 4 VVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD--KYDIGTGFGHFGIAVDDVA 81 (262)
Q Consensus 4 v~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~i~~~v~d~~ 81 (262)
-.|.|+|++++.+||+++||+++......+.+....+.+.+++ ..+.+......... ......+..+++|.|+|++
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d 80 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGD--GGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECC--EEEEEecCCCcccccccccCCCceEEEEEEECCHH
Confidence 4688999999999999999999987643223322233455442 22222221111111 0123345668999999999
Q ss_pred HHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024790 82 KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 123 (262)
Q Consensus 82 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~ 123 (262)
+++++++++|+++..++...++ +.+.++++|||||.|+|.+
T Consensus 81 ~~~~~l~~~G~~v~~~~~~~~~-g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 81 AHYERARAAGAEILREPTDTPY-GSREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHCCCEEeeCccccCC-CcEEEEEECCCCCEEEEec
Confidence 9999999999999988877765 4677889999999999964
No 104
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.69 E-value=1.4e-15 Score=107.79 Aligned_cols=109 Identities=18% Similarity=0.308 Sum_probs=79.1
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeC--
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD-- 78 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~-- 78 (262)
++|+.|.|+|+++|++||+++||+++..... ...++..+. ...+.+... ....+..|++|.++
T Consensus 5 ~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~---~~~l~~~~~------~~~~~~~h~a~~v~~~ 69 (123)
T cd08351 5 LNHTIVPARDREASAEFYAEILGLPWAKPFG------PFAVVKLDN---GVSLDFAQP------DGEIPPQHYAFLVSEE 69 (123)
T ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEeeeccC------CEEEEEcCC---CcEEEEecC------CCCCCcceEEEEeCHH
Confidence 5799999999999999999999999875321 123333332 123444332 11224578998887
Q ss_pred CHHHHHHHHHHcCCeeecCCccc------CCCCeEEEEEECCCCCEEEEEEc
Q 024790 79 DVAKTVELIKAKGGKVTREPGPV------KGGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 79 d~~~~~~~l~~~G~~~~~~~~~~------~~~~~~~~~~~DP~G~~iel~~~ 124 (262)
|+++++++|+++|+++...|... ..++.+.++|.||+||.|||++.
T Consensus 70 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 70 EFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred HHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 69999999999999987665443 12466899999999999999976
No 105
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.69 E-value=2.1e-15 Score=105.82 Aligned_cols=110 Identities=26% Similarity=0.423 Sum_probs=83.6
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeC--
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD-- 78 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~-- 78 (262)
|+|+.|.|+|++++++||+++|||++....+ ...++..+. ..+..+.+... ...+..|++|.|+
T Consensus 3 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~~~ 68 (117)
T cd07240 3 IAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTEG-------DEPGVDALGFEVASE 68 (117)
T ss_pred eeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEeC-------CCCCceeEEEEcCCH
Confidence 6899999999999999999999999987642 245666552 12233344322 1246789999998
Q ss_pred -CHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcC
Q 024790 79 -DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 125 (262)
Q Consensus 79 -d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 125 (262)
++++++++++++|+++...+.... ++.+.++|.||+||.+|++...
T Consensus 69 ~~v~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 69 EDLEALAAHLEAAGVAPEEASDPEP-GVGRGLRFQDPDGHLLELFVEA 115 (117)
T ss_pred HHHHHHHHHHHHcCCceEEcCccCC-CCceEEEEECCCCCEEEEEEcc
Confidence 588999999999999877664333 3567889999999999999653
No 106
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.69 E-value=1.3e-15 Score=105.37 Aligned_cols=108 Identities=25% Similarity=0.292 Sum_probs=76.4
Q ss_pred EEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCCHHHHHH
Q 024790 6 YRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVE 85 (262)
Q Consensus 6 l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d~~~~~~ 85 (262)
|.|+|++++++||+++|||++....+ ..+.+..+.....-...+.... .......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP------DYVDFSLGFRFHDGVIEFLQFP--DPPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET------SEEEEEETEEEEEEEEEEEEEE--SSSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC------CeEEEEeccchhhhhHHHccCC--ccccCCCceeEEEEEEcCHHHHHH
Confidence 68999999999999999999988543 2333333211000011222211 122234577899999999999999
Q ss_pred HHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEE
Q 024790 86 LIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 122 (262)
Q Consensus 86 ~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~ 122 (262)
+++++|+++..+|....+ +.+.+++.||+||.|+|+
T Consensus 73 ~l~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPW-GQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETT-SEEEEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCC-CeEEEEEECCCCCEEEeC
Confidence 999999999888777665 668899999999999986
No 107
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.69 E-value=2e-15 Score=108.71 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=85.9
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecC
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD 209 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~d 209 (262)
+++|+.|.|+|++++++||+++|||++...... ....++..+ ......+.+.............+..|++|.|.|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRD-PDEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEec-CCCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 578999999999999999999999998755331 123344422 123455666543222111234578899999987
Q ss_pred HH---HHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccccc
Q 024790 210 VY---KTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFL 258 (262)
Q Consensus 210 l~---~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~~~ 258 (262)
++ +++++|+++|+++..++ ..++ ++.+|++||+||.|||+...+..
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~-~~~~--~~~~~~~DP~G~~ie~~~~~~~~ 124 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPV-DHGN--AWSIYFRDPDGNRLELFVDTPWY 124 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccC-CCCc--eeEEEEECCCCCEEEEEEcCCCC
Confidence 65 58899999999987654 2232 47899999999999999876643
No 108
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.68 E-value=4e-15 Score=107.11 Aligned_cols=118 Identities=27% Similarity=0.442 Sum_probs=82.9
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCCH
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDV 80 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d~ 80 (262)
|+||.|.|+|++++++||+++||+++...... ....++..+.. ....+.+.............++.|++|.|+|.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~~ 76 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDPD-EHHQIALITGRPAAPPPGPAGLNHIAFEVDSL 76 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecCC-CceEEEEEecCCCCCCCCCCCceEEEEEeCCH
Confidence 68999999999999999999999998765421 12445554311 12234444332221112345788999999976
Q ss_pred H---HHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCC
Q 024790 81 A---KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 126 (262)
Q Consensus 81 ~---~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~ 126 (262)
+ +++++|.+.|+++..++ ..+..+.+++.||+||.|||+...+
T Consensus 77 ~~v~~~~~~l~~~G~~~~~~~---~~~~~~~~~~~DP~G~~ie~~~~~~ 122 (134)
T cd08348 77 DDLRDLYERLRAAGITPVWPV---DHGNAWSIYFRDPDGNRLELFVDTP 122 (134)
T ss_pred HHHHHHHHHHHHCCCCccccC---CCCceeEEEEECCCCCEEEEEEcCC
Confidence 5 58899999999876543 2234578899999999999997654
No 109
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.68 E-value=1.6e-15 Score=105.72 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=79.7
Q ss_pred EEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecCHHHH
Q 024790 134 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKT 213 (262)
Q Consensus 134 v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~dl~~~ 213 (262)
..|.|+|++++++||+++|||+..... + . ..++... ...+..+.+..... .++...|++|.|+|++++
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~~----~-~-~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~~ 71 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMDH----G-W-IATFASP-QNMTVQVSLATEGG-----TATVVPDLSIEVDDVDAA 71 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEcC----C-c-eEEEeec-CCCCcEEEEecCCC-----CCCCCCEEEEEeCCHHHH
Confidence 468899999999999999999985421 1 1 1222221 12244455543211 123457999999999999
Q ss_pred HHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEec
Q 024790 214 AEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 254 (262)
Q Consensus 214 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 254 (262)
+++|+++|+++..+|...++| .+.+|++||+||.|+|+++
T Consensus 72 ~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 72 LARAVAAGFAIVYGPTDEPWG-VRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHhcCCeEecCCccCCCc-eEEEEEECCCCCEEEEEEc
Confidence 999999999999888776765 3789999999999999975
No 110
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.68 E-value=1.6e-15 Score=106.51 Aligned_cols=112 Identities=21% Similarity=0.337 Sum_probs=85.0
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEec-
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD- 208 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~- 208 (262)
+++|+.|.|+|++++++||+++|||++..... ...++..+. ..+..+.+... ...+..|++|.|.
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~~ 67 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTEG-------DEPGVDALGFEVAS 67 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEeC-------CCCCceeEEEEcCC
Confidence 58999999999999999999999999886542 123344321 23444554421 1257889999997
Q ss_pred --CHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccc
Q 024790 209 --DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 209 --dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 256 (262)
++++..++++++|+++...|...+++ ++.+|++||+||.||++...+
T Consensus 68 ~~~v~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~DP~G~~ie~~~~~~ 116 (117)
T cd07240 68 EEDLEALAAHLEAAGVAPEEASDPEPGV-GRGLRFQDPDGHLLELFVEAD 116 (117)
T ss_pred HHHHHHHHHHHHHcCCceEEcCccCCCC-ceEEEEECCCCCEEEEEEccC
Confidence 68999999999999998877544443 478999999999999997643
No 111
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.68 E-value=1.7e-15 Score=105.74 Aligned_cols=109 Identities=25% Similarity=0.403 Sum_probs=77.9
Q ss_pred eEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeC--CH
Q 024790 3 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD--DV 80 (262)
Q Consensus 3 hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~--d~ 80 (262)
||.|.|+|++++.+||+++||+++..+.+ ...++..+. ..+.+...... ...+.+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~------~~~~~~~~~----~~l~~~~~~~~--~~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS------KEAYFELAG----LWICLMEEDSL--QGPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC------ceeEEEecC----eEEEeccCCCc--CCCCCCccEEEEEcCHHHH
Confidence 89999999999999999999999876542 233444432 23333322111 112346789999995 79
Q ss_pred HHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEc
Q 024790 81 AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 81 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 124 (262)
++++++++++|+++..++.... +..+.+++.||+|+.||++..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQ-GEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccC-CCceEEEEECCCCCEEEEEeC
Confidence 9999999999999864332222 345789999999999999854
No 112
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.68 E-value=1.7e-15 Score=107.36 Aligned_cols=114 Identities=23% Similarity=0.259 Sum_probs=80.2
Q ss_pred ceeEEeeecChhhhHHHHHHh---cCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEe
Q 024790 131 LCQVMLRVGDLDRSINFYEQA---FGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 207 (262)
Q Consensus 131 ~~~v~l~v~d~~~~~~FY~~~---lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v 207 (262)
+.|++|.|+|++++++||+++ |||++.... .+ . . ..+... +....+.+.......+ ....+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~-~-~-~~~~~~--~~~~~~~l~~~~~~~~-~~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GP-G-A-VGYGKG--GGGPDFWVTKPFDGEP-ATAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CC-c-e-eEeccC--CCCceEEEeccccCCC-CCCCCceEEEEEC
Confidence 579999999999999999999 689876543 11 1 1 222221 1244555554322111 1223457999999
Q ss_pred cC---HHHHHHHHHHhCCeeecCCccCCC--CcceEEEEeCCCCcEEEEE
Q 024790 208 DD---VYKTAEAIKLFGGKVTREPGPLPG--INTKITACLDPDGWKTVFV 252 (262)
Q Consensus 208 ~d---l~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~DP~G~~ie~~ 252 (262)
+| ++++++++.++|+.+..+|...++ ...+.+|++||+||.|||+
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 86 788999999999999888876654 2235789999999999996
No 113
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.68 E-value=1.5e-15 Score=107.18 Aligned_cols=112 Identities=27% Similarity=0.388 Sum_probs=82.0
Q ss_pred CCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEe-
Q 024790 129 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT- 207 (262)
Q Consensus 129 ~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v- 207 (262)
.+|+|+.|.|+|++++++||+++|||++..... .+ .++...+ ...+.+.+.. ...++..|++|.+
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~v~ 67 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GI--VYLRATG-SEHHILRLRR-------SDRNRLDVVSFSVA 67 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CE--EEEECCC-CccEEEEecc-------CCCCCCceEEEEeC
Confidence 368999999999999999999999999865422 12 2333222 2233343321 1234678999999
Q ss_pred --cCHHHHHHHHHHhCCeeecCCccC--CCCcceEEEEeCCCCcEEEEEecc
Q 024790 208 --DDVYKTAEAIKLFGGKVTREPGPL--PGINTKITACLDPDGWKTVFVDNV 255 (262)
Q Consensus 208 --~dl~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~~~DP~G~~ie~~~~~ 255 (262)
+++++++++++++|+++..+|... +++ ++.++++||+||.|||+...
T Consensus 68 ~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 68 SRADVDALARQVAARGGTVLSEPGATDDPGG-GYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCceecCCcccCCCCC-ceEEEEECCCCCEEEEEecc
Confidence 578999999999999998776433 333 57889999999999998754
No 114
>PRK06724 hypothetical protein; Provisional
Probab=99.68 E-value=3e-15 Score=106.41 Aligned_cols=108 Identities=20% Similarity=0.291 Sum_probs=74.3
Q ss_pred CceEEEEeCCHHHHHHHHHhhc---CcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEe
Q 024790 1 MLHVVYRVGDLDRTIKFYTECL---GMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 77 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v 77 (262)
|+||+|.|+|+++|++||+++| |++....- .+ ...... +.+...... .....|..|+||.|
T Consensus 8 i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~---------~~---~~g~~~--l~l~~~~~~--~~~~~g~~h~af~v 71 (128)
T PRK06724 8 IHHIEFWVANLEESISFYDMLFSIIGWRKLNEV---------AY---STGESE--IYFKEVDEE--IVRTLGPRHICYQA 71 (128)
T ss_pred cCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeE---------ee---eCCCee--EEEecCCcc--ccCCCCceeEEEec
Confidence 6899999999999999999966 66643210 11 011111 111111110 11234778999998
Q ss_pred ---CCHHHHHHHHHHcCCeeecCCcccC--CCCeEEEEEECCCCCEEEEEEc
Q 024790 78 ---DDVAKTVELIKAKGGKVTREPGPVK--GGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 78 ---~d~~~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~~~DP~G~~iel~~~ 124 (262)
+++++++++|+++|+++..+|.... .++.++++|.|||||.||+...
T Consensus 72 ~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 72 INRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred CChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 6799999999999999877765433 2355788999999999999866
No 115
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.67 E-value=2.4e-15 Score=103.97 Aligned_cols=121 Identities=26% Similarity=0.288 Sum_probs=91.3
Q ss_pred CCCCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEE
Q 024790 127 TPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIG 206 (262)
Q Consensus 127 ~~~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~ 206 (262)
.+..+.|..|.+.|++++++||.++|||+..+..+... +..+.+.......++.+.-. + ...++++.+.+.|.
T Consensus 6 ~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~--~~y~~f~~~~~~~gG~l~~~---~--~~~p~~~~~~iy~~ 78 (127)
T COG3324 6 EKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGE--MRYAVFPADGAGAGGGLMAR---P--GSPPGGGGWVIYFA 78 (127)
T ss_pred cCCccEEEeeecCCHHHHHHHHHHhhCceecccccCCC--ceEEEEECCCccccceeccC---C--cCCCCCCCEEEEEe
Confidence 45678999999999999999999999999987654432 34444433322222222111 0 12223678999999
Q ss_pred ecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEecc
Q 024790 207 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 255 (262)
Q Consensus 207 v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 255 (262)
|+|+++..+|.+++|++++.++...+++ ++++.+.||+||+|.|.+..
T Consensus 79 v~did~~l~rv~~~GG~V~~p~~~~p~~-G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 79 VDDIDATLERVVAAGGKVLRPKTEFPGG-GRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred cCChHHHHHHHHhcCCeEEecccccCCc-eEEEEEECCCCCEEEEeecC
Confidence 9999999999999999999999888854 58999999999999998753
No 116
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.67 E-value=6.7e-15 Score=104.04 Aligned_cols=115 Identities=21% Similarity=0.211 Sum_probs=83.4
Q ss_pred EEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCC--CCCCCCCCceeEEEEeCCHH
Q 024790 4 VVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV--DKYDIGTGFGHFGIAVDDVA 81 (262)
Q Consensus 4 v~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~i~~~v~d~~ 81 (262)
+.|.|+|++++.+||+++||+++......+.+......+..++ . .+.+...... .....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~--~--~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGD--S--VLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECC--E--EEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 4688999999999999999999987654333333344444443 2 2344322111 01123345678999999999
Q ss_pred HHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024790 82 KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 123 (262)
Q Consensus 82 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~ 123 (262)
++++++.+.|+++..++....+ +.+.+++.||+|+.|+|.+
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFW-GDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHHHCCCeEecCcccccc-cceEEEEECCCCCEEEEec
Confidence 9999999999999888766654 5678899999999999986
No 117
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.67 E-value=2.7e-15 Score=104.43 Aligned_cols=109 Identities=25% Similarity=0.289 Sum_probs=80.8
Q ss_pred EeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecCHHHHH
Q 024790 135 MLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTA 214 (262)
Q Consensus 135 ~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~dl~~~~ 214 (262)
.|.|+|++++++||+++|||++..... +. .+.++.. ++..+.+.......+. ..++..|++|.++|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~----~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSR----GGAQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEe----CCEEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 588999999999999999999876543 11 2333442 2355555543322111 3456779999999999999
Q ss_pred HHHHHhCCe-eecCCccCCCCcceEEEEeCCCCcEEEEEe
Q 024790 215 EAIKLFGGK-VTREPGPLPGINTKITACLDPDGWKTVFVD 253 (262)
Q Consensus 215 ~~l~~~g~~-~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 253 (262)
++++++|++ +..++...+++ .+.++++||+|+.|+|+|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWG-MREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcc-cEEEEEECCCCCEEEecC
Confidence 999999999 66666666664 378899999999999986
No 118
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.67 E-value=4.7e-15 Score=105.12 Aligned_cols=114 Identities=25% Similarity=0.319 Sum_probs=78.2
Q ss_pred CceEEEEeCCHHHHHHHHHhh---cCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEe
Q 024790 1 MLHVVYRVGDLDRTIKFYTEC---LGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 77 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~---lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v 77 (262)
|+||.|.|+|++++++||+++ ||+++..+.. . ....+..+.... .+.+........ ....+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~--~---~~~~~~~~~~~~--~~~l~~~~~~~~-~~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG--P---GAVGYGKGGGGP--DFWVTKPFDGEP-ATAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC--C---ceeEeccCCCCc--eEEEeccccCCC-CCCCCceEEEEEC
Confidence 689999999999999999998 6998875531 1 122222221222 333333221111 1223456999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCcccCC--CCeEEEEEECCCCCEEEEE
Q 024790 78 DD---VAKTVELIKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELL 122 (262)
Q Consensus 78 ~d---~~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~~~DP~G~~iel~ 122 (262)
+| ++++++++.++|+.+..+|....+ ...+.++|.||+||.|||+
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 97 788999999999998877655443 2446789999999999986
No 119
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.66 E-value=4e-15 Score=103.85 Aligned_cols=107 Identities=21% Similarity=0.297 Sum_probs=77.9
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCCH
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDV 80 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d~ 80 (262)
|+||.|.|+|+++|++||++ |||++..+.. ..+|+..+.. .+..+.+... ...++.|++|.|+|.
T Consensus 4 l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~------~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~af~v~~~ 68 (113)
T cd07267 4 IAHVRFEHPDLDKAERFLTD-FGLEVAARTD------DELYYRGYGT-DPFVYVARKG-------EKARFVGAAFEAASR 68 (113)
T ss_pred EEEEEEccCCHHHHHHHHHH-cCCEEEEecC------CeEEEecCCC-ccEEEEcccC-------CcCcccEEEEEECCH
Confidence 58999999999999999999 9999865532 2445544322 2222222111 124677999999999
Q ss_pred HHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEc
Q 024790 81 AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 81 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 124 (262)
+++.+.+++.|.....++. .+ ++.+.++|.||+||.|||+..
T Consensus 69 ~~~~~~~~~~g~~~~~~~~-~~-~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 69 ADLEKAAALPGASVIDDLE-AP-GGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred HHHHHHHHcCCCeeecCCC-CC-CCceEEEEECCCCCEEEEEec
Confidence 9999999999998765432 23 356789999999999999854
No 120
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=3.1e-15 Score=105.83 Aligned_cols=114 Identities=21% Similarity=0.286 Sum_probs=79.7
Q ss_pred ceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCc------ccccCCceeEEE
Q 024790 131 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT------DYDKGNAYAQIA 204 (262)
Q Consensus 131 ~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~i~ 204 (262)
|.++.|.|+|++++++||+++|||++..+. +.. ..++..++. ..+.+....... +.....+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~~--~~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKE---DRR--LAFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecC---CCc--eEEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 468999999999999999999999987641 222 234443321 333333221111 111234778999
Q ss_pred EEe--cCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEec
Q 024790 205 IGT--DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 254 (262)
Q Consensus 205 ~~v--~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 254 (262)
|.+ +|++++++++.++|+++...+. ..+ .++.+|++||+||.|||++.
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~~-~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-WPR-GGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-CCC-CeeEEEEECCCCCEEEEecC
Confidence 988 5899999999999999876554 222 25789999999999999863
No 121
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=3e-15 Score=104.66 Aligned_cols=108 Identities=26% Similarity=0.286 Sum_probs=79.3
Q ss_pred EEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcc-cccCCceeEEEEEecC---
Q 024790 134 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD-YDKGNAYAQIAIGTDD--- 209 (262)
Q Consensus 134 v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~i~~~v~d--- 209 (262)
+.|.|+|++++++||+++|||++.... ..+. .+... ++..+.+.......+ .....+..|++|.+++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTFA--LFVLG---SGVKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----CceE--EEEeC---CCcEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 678999999999999999999976532 1222 22221 124555554332221 1234577899999975
Q ss_pred HHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEE
Q 024790 210 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 252 (262)
Q Consensus 210 l~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~ 252 (262)
+++++++++++|+++..+|...++| +.++++|||||.|||+
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g--~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFG--YTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCc--cEEEEECCCCCEEEee
Confidence 8899999999999999988887774 6789999999999986
No 122
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=6.6e-15 Score=104.09 Aligned_cols=113 Identities=27% Similarity=0.405 Sum_probs=80.5
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCC------CCCCCCCceeEE
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD------KYDIGTGFGHFG 74 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~i~ 74 (262)
+.||.|.|+|++++++||+++|||++..+. .+ ...++..++. . .+.+....... +.....+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~--~~~~l~~~~~-~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKE---DR--RLAFFWVGGR-G--MLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecC---CC--ceEEEEcCCC-c--EEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 568999999999999999999999987641 11 2345555543 2 23333221110 111234778999
Q ss_pred EEeC--CHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024790 75 IAVD--DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 123 (262)
Q Consensus 75 ~~v~--d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~ 123 (262)
|.++ |++++++++.++|+++..++. .. ++.+.++|.||+|+.||+++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~-~~~~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-WP-RGGRSLYFRDPDGNLLELAT 121 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-CC-CCeeEEEEECCCCCEEEEec
Confidence 9985 799999999999998876543 22 35678999999999999985
No 123
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.66 E-value=5e-15 Score=103.35 Aligned_cols=109 Identities=21% Similarity=0.290 Sum_probs=79.0
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecC
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD 209 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~d 209 (262)
++.|+.|.|+|++++++||++ |||++..... + . .++...+ .....+ +... ...++..|++|.|+|
T Consensus 3 ~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~--~---~-~~~~~~~-~~~~~~-~~~~------~~~~~~~~~af~v~~ 67 (113)
T cd07267 3 DIAHVRFEHPDLDKAERFLTD-FGLEVAARTD--D---E-LYYRGYG-TDPFVY-VARK------GEKARFVGAAFEAAS 67 (113)
T ss_pred EEEEEEEccCCHHHHHHHHHH-cCCEEEEecC--C---e-EEEecCC-CccEEE-Eccc------CCcCcccEEEEEECC
Confidence 689999999999999999999 9999865422 1 1 2333221 122222 2211 123578899999999
Q ss_pred HHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEecc
Q 024790 210 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 255 (262)
Q Consensus 210 l~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 255 (262)
.+++.+.+++.|..+...+. .+++ ++++|++||+||.|||+...
T Consensus 68 ~~~~~~~~~~~g~~~~~~~~-~~~~-~~~~~~~DPdG~~iEl~~~~ 111 (113)
T cd07267 68 RADLEKAAALPGASVIDDLE-APGG-GKRVTLTDPDGFPVELVYGQ 111 (113)
T ss_pred HHHHHHHHHcCCCeeecCCC-CCCC-ceEEEEECCCCCEEEEEecc
Confidence 99999999999998876543 3443 47899999999999998653
No 124
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.65 E-value=5.2e-15 Score=104.60 Aligned_cols=108 Identities=30% Similarity=0.487 Sum_probs=77.5
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEe--C
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV--D 78 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v--~ 78 (262)
|+||.|.|+|++++.+||+++||+++....+ ...++..+. ..+.+..... . ....+..|++|.+ +
T Consensus 2 i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~------~~~~~~~~~--~~~~l~~~~~--~---~~~~~~~hi~f~v~~~ 68 (121)
T cd07244 2 INHITLAVSDLERSVAFYVDLLGFKLHVRWD------KGAYLEAGD--LWLCLSVDAN--V---GPAKDYTHYAFSVSEE 68 (121)
T ss_pred cceEEEEECCHHHHHHHHHHhcCCEEEEecC------CceEEecCC--EEEEEecCCC--C---CCCCCeeeEEEEeCHH
Confidence 6899999999999999999999999876432 123444432 2222222111 1 1234677999998 4
Q ss_pred CHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcC
Q 024790 79 DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 125 (262)
Q Consensus 79 d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 125 (262)
|+++++++++++|+++..++.. ..+.++|.|||||.|||++..
T Consensus 69 dl~~~~~~l~~~G~~~~~~~~~----~~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 69 DFASLKEKLRQAGVKEWKENTS----EGDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHcCCcccCCCCC----CccEEEEECCCCCEEEEEeCC
Confidence 7999999999999988654322 236799999999999999653
No 125
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.65 E-value=2.7e-15 Score=106.15 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=77.4
Q ss_pred ceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecC-----CcccccCCceeEEEE
Q 024790 131 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYG-----VTDYDKGNAYAQIAI 205 (262)
Q Consensus 131 ~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~i~~ 205 (262)
++||+|.|+|++++++||++ |||++...... . ....+..+. +..+.+..... .......++..+++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~--~--~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD--E--PHVEAVLPG---GVRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC--C--CcEEEEeCC---CEEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 57999999999999999975 99997543221 1 112222111 23333322110 001122345678888
Q ss_pred Eec---CHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEE
Q 024790 206 GTD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 252 (262)
Q Consensus 206 ~v~---dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~ 252 (262)
.+. |+++++++|+++|+++..+|...++|. +.++++||+||.|||+
T Consensus 73 ~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~-~~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAELVGAGYPGHKEPWDAPWGQ-RYAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHHHHCCCCcCCCCccCCCCC-EEEEEECCCCCEEEEe
Confidence 764 899999999999999998887777753 7899999999999996
No 126
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.65 E-value=1.1e-14 Score=101.40 Aligned_cols=109 Identities=21% Similarity=0.241 Sum_probs=78.1
Q ss_pred eEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCCHHH
Q 024790 3 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAK 82 (262)
Q Consensus 3 hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d~~~ 82 (262)
+..|.|+|++++++||+++|||++.... + ...++..+.. ....+.+..... .+....|++|.|+|+++
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~~----~--~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~ 70 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMDH----G--WIATFASPQN-MTVQVSLATEGG-----TATVVPDLSIEVDDVDA 70 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEcC----C--ceEEEeecCC-CCcEEEEecCCC-----CCCCCCEEEEEeCCHHH
Confidence 3578999999999999999999986431 1 2233332221 123344432211 11234589999999999
Q ss_pred HHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEc
Q 024790 83 TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 83 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 124 (262)
++++|+++|+++..++....+ +.+.+++.||+||.|+|+++
T Consensus 71 ~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 71 ALARAVAAGFAIVYGPTDEPW-GVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHhcCCeEecCCccCCC-ceEEEEEECCCCCEEEEEEc
Confidence 999999999998877766554 55778999999999999975
No 127
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.65 E-value=4.3e-15 Score=105.00 Aligned_cols=109 Identities=26% Similarity=0.355 Sum_probs=78.8
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEe--
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT-- 207 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v-- 207 (262)
++.|+.|.|+|++++.+||+++|||++....+ + . .++..+ ...+.+..... ....++..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~--~--~~~~~~----~~~~~l~~~~~---~~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K--G--AYLEAG----DLWLCLSVDAN---VGPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C--c--eEEecC----CEEEEEecCCC---CCCCCCeeeEEEEeCH
Confidence 57899999999999999999999999865432 1 1 223322 12233322111 12245778999988
Q ss_pred cCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEecc
Q 024790 208 DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 255 (262)
Q Consensus 208 ~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 255 (262)
+|+++++++++++|+++..++.. . ++.+|++|||||.|||+...
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~--~--~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS--E--GDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC--C--ccEEEEECCCCCEEEEEeCC
Confidence 58999999999999998765432 2 36899999999999999754
No 128
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.65 E-value=7.6e-15 Score=103.52 Aligned_cols=111 Identities=25% Similarity=0.349 Sum_probs=80.0
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeC--
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD-- 78 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~-- 78 (262)
|+|+.|.|+|++++++||+++|||++..... ..+++..+.. ....+.+... ...++.|++|.++
T Consensus 4 i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~v~~~ 69 (120)
T cd08362 4 LRGVGLGVPDLAAAAAFYREVWGLSVVAEDD------GIVYLRATGS-EHHILRLRRS-------DRNRLDVVSFSVASR 69 (120)
T ss_pred eeEEEEecCCHHHHHHHHHhCcCcEEEEecC------CEEEEECCCC-ccEEEEeccC-------CCCCCceEEEEeCCH
Confidence 6899999999999999999999999875432 2345543322 2222333211 1235678999994
Q ss_pred -CHHHHHHHHHHcCCeeecCCcccC-CCCeEEEEEECCCCCEEEEEEcC
Q 024790 79 -DVAKTVELIKAKGGKVTREPGPVK-GGNTVIAFIEDPDGYKFELLERG 125 (262)
Q Consensus 79 -d~~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~~~DP~G~~iel~~~~ 125 (262)
++++++++|+++|+++..++.... .++.+.++|.||+||.++|+...
T Consensus 70 ~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 70 ADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred HHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 689999999999999876653322 23467789999999999998754
No 129
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.64 E-value=5.7e-15 Score=104.23 Aligned_cols=107 Identities=21% Similarity=0.217 Sum_probs=76.8
Q ss_pred EEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecCHHHH
Q 024790 134 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKT 213 (262)
Q Consensus 134 v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~dl~~~ 213 (262)
..|.|+|++++++||++ |||++...... .+..+..+ +..+.|..... ........|++|.|+|++++
T Consensus 6 ~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-----~~~~~~~~----~~~l~l~~~~~---~~~~~~~~~~~~~v~dvd~~ 72 (120)
T cd08350 6 PNLPSRDLDATEAFYAR-LGFSVGYRQAA-----GYMILRRG----DLELHFFAHPD---LDPATSPFGCCLRLPDVAAL 72 (120)
T ss_pred ceeEcCCHHHHHHHHHH-cCCEEEecCCC-----CEEEEEcC----CEEEEEEecCc---CCCCCCcceEEEEeCCHHHH
Confidence 57899999999999999 99998754321 23334322 24556654321 11223446899999999999
Q ss_pred HHHHHHhCCeee-------cCCccCCCCcceEEEEeCCCCcEEEEEec
Q 024790 214 AEAIKLFGGKVT-------REPGPLPGINTKITACLDPDGWKTVFVDN 254 (262)
Q Consensus 214 ~~~l~~~g~~~~-------~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 254 (262)
+++|+++|+++. .++...++| .+.++++|||||.|+|.|.
T Consensus 73 ~~~l~~~G~~~~~~~~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 73 HAEFRAAGLPETGSGIPRITPPEDQPWG-MREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHhCccccccCCCcccCCcCCCCc-eeEEEEECCCCCEEEeecC
Confidence 999999999853 344444554 4889999999999999884
No 130
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.64 E-value=4.2e-15 Score=103.67 Aligned_cols=108 Identities=23% Similarity=0.358 Sum_probs=76.2
Q ss_pred eEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEe--cCH
Q 024790 133 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT--DDV 210 (262)
Q Consensus 133 ~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v--~dl 210 (262)
|+.|.|+|++++++||+++|||++....+ . ..++..+ ...+.+...... .....+..|++|.| +|+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~----~~~~~~~----~~~l~~~~~~~~--~~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K----EAYFELA----GLWICLMEEDSL--QGPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c----eeEEEec----CeEEEeccCCCc--CCCCCCccEEEEEcCHHHH
Confidence 78999999999999999999999865432 1 1122221 234444332211 11234678999998 589
Q ss_pred HHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEe
Q 024790 211 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 253 (262)
Q Consensus 211 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 253 (262)
++++++++++|+++...+..... .++.+|++||+||+|||..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQG-EGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCC-CceEEEEECCCCCEEEEEe
Confidence 99999999999998754322222 2578999999999999985
No 131
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.64 E-value=7.3e-15 Score=103.65 Aligned_cols=112 Identities=22% Similarity=0.270 Sum_probs=78.9
Q ss_pred eeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecC--
Q 024790 132 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD-- 209 (262)
Q Consensus 132 ~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~d-- 209 (262)
.|+.|.|+|++++.+||+++||++...... + . ..+.. .. ....+.+... . ....++..|++|.|++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~--~-~~~~~-~~--~~~~~~~~~~--~--~~~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD--D--Y-AKFLL-ED--PRLNFVLNER--P--GAPGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC--C--e-eEEEe-cC--CceEEEEecC--C--CCCCCCeeEEEEEeCCHH
Confidence 489999999999999999999998765421 1 1 12221 11 2233333321 1 1111578899999987
Q ss_pred -HHHHHHHHHHhCCeeecCCccCC-CCcceEEEEeCCCCcEEEEEecc
Q 024790 210 -VYKTAEAIKLFGGKVTREPGPLP-GINTKITACLDPDGWKTVFVDNV 255 (262)
Q Consensus 210 -l~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~DP~G~~ie~~~~~ 255 (262)
++++++++.++|+++..+|.... ++..+.+|++||+||.|||+++.
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 78899999999999987664432 22347899999999999999864
No 132
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=4.5e-15 Score=105.38 Aligned_cols=112 Identities=23% Similarity=0.207 Sum_probs=77.7
Q ss_pred eeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCC-----ccc--ccCCceeEEE
Q 024790 132 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGV-----TDY--DKGNAYAQIA 204 (262)
Q Consensus 132 ~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~--~~~~~~~~i~ 204 (262)
.+++|.|+|++++++||++ |||++......++ .. .+..+ ....+.+...... .+. ....+..|++
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~--~~--~~~~~---~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 73 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK--AA--CMVIS---DNIFVMLLTEDFFQTFTPKPIADTKKSTEVLIS 73 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCCC--eE--EEEEC---CceEEEEEcHHHHhhccCCCcccCCCCCeEEEE
Confidence 5799999999999999976 9999864322222 11 11111 1234444432110 000 1234567999
Q ss_pred EEec---CHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEe
Q 024790 205 IGTD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 253 (262)
Q Consensus 205 ~~v~---dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 253 (262)
|.|+ |+++++++++++|+++..+|...++ ++.+|++|||||+|||+-
T Consensus 74 f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 74 LSADSREEVDELVEKALAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred EeCCCHHHHHHHHHHHHHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 9997 6889999999999999988877665 467899999999999973
No 133
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.64 E-value=1.6e-14 Score=101.96 Aligned_cols=112 Identities=28% Similarity=0.437 Sum_probs=77.9
Q ss_pred ceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCC--
Q 024790 2 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD-- 79 (262)
Q Consensus 2 ~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d-- 79 (262)
-||.|.|+|++++.+||+++||++...+.+ . ...|. .+.. ...+.+...... ...++.|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~----~-~~~~~-~~~~--~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD----D-YAKFL-LEDP--RLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC----C-eeEEE-ecCC--ceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 499999999999999999999998765431 1 12222 2222 222333322111 11578899999987
Q ss_pred -HHHHHHHHHHcCCeeecCCcccC-CCCeEEEEEECCCCCEEEEEEcC
Q 024790 80 -VAKTVELIKAKGGKVTREPGPVK-GGNTVIAFIEDPDGYKFELLERG 125 (262)
Q Consensus 80 -~~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~~~DP~G~~iel~~~~ 125 (262)
++++++++.++|+++..++.... .+..+++++.||+||.|||+...
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 78899999999999876553322 12356799999999999999753
No 134
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.64 E-value=7.4e-15 Score=103.92 Aligned_cols=113 Identities=17% Similarity=0.170 Sum_probs=75.7
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecC-----CCCCCCCCCCceeEEE
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY-----GVDKYDIGTGFGHFGI 75 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~i~~ 75 (262)
|+||+|.|+|+++|++||+. |||++..... ....+.+..+. .. .+.+.... .......+.+..+++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~----~~~~~~~~~~~-~~--~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEAD----DEPHVEAVLPG-GV--RLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcC----CCCcEEEEeCC-CE--EEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 68999999999999999975 9998754322 11122333321 12 22222110 0011112234457888
Q ss_pred EeC---CHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEE
Q 024790 76 AVD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 122 (262)
Q Consensus 76 ~v~---d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~ 122 (262)
.+. |+++++++|+++|+++..+|...++ +.+.++++||+||.|||+
T Consensus 73 ~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAELVGAGYPGHKEPWDAPW-GQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHHHHCCCCcCCCCccCCC-CCEEEEEECCCCCEEEEe
Confidence 765 8999999999999998877776665 457788999999999986
No 135
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.63 E-value=9.3e-15 Score=103.78 Aligned_cols=113 Identities=24% Similarity=0.340 Sum_probs=74.2
Q ss_pred eEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCC----CCC-CCCCCCceeE--EE
Q 024790 3 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG----VDK-YDIGTGFGHF--GI 75 (262)
Q Consensus 3 hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~-~~~~~~~~~i--~~ 75 (262)
||+|.|+|+++|++||+++||+++..... ....+..+ ...+.+.+..... ... .....+..|+ ++
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE------TWVDFDFF--GHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC------Cccccccc--CcEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 99999999999999999999999865321 11112221 1223333322110 000 1112244565 45
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCccc---CCCCeEEEEEECCCCCEEEEEE
Q 024790 76 AVDDVAKTVELIKAKGGKVTREPGPV---KGGNTVIAFIEDPDGYKFELLE 123 (262)
Q Consensus 76 ~v~d~~~~~~~l~~~G~~~~~~~~~~---~~~~~~~~~~~DP~G~~iel~~ 123 (262)
.++|+++++++|+++|+++..+|... ..++.+.++|.|||||.|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 67899999999999999988666432 2235688999999999999974
No 136
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.62 E-value=8.8e-15 Score=103.90 Aligned_cols=113 Identities=18% Similarity=0.216 Sum_probs=73.9
Q ss_pred eEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCc---cc--ccCCceeEEE--E
Q 024790 133 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT---DY--DKGNAYAQIA--I 205 (262)
Q Consensus 133 ~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~--~~~~~~~~i~--~ 205 (262)
||.|.|+|++++++||+++|||++..... .+..+... .....+.+....... .. ....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE------TWVDFDFF--GHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC------Cccccccc--CcEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 89999999999999999999999864321 11122211 112222222111000 00 1112445665 5
Q ss_pred EecCHHHHHHHHHHhCCeeecCCccCC---CCcceEEEEeCCCCcEEEEEe
Q 024790 206 GTDDVYKTAEAIKLFGGKVTREPGPLP---GINTKITACLDPDGWKTVFVD 253 (262)
Q Consensus 206 ~v~dl~~~~~~l~~~g~~~~~~~~~~~---~~~~~~~~~~DP~G~~ie~~~ 253 (262)
.++|+++++++|+++|+++..+|.... .+..+.+|++|||||.|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 678999999999999999998775432 122488999999999999964
No 137
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.62 E-value=7.4e-15 Score=101.74 Aligned_cols=95 Identities=29% Similarity=0.352 Sum_probs=76.3
Q ss_pred ceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCC--CCCCCceeEEEEeCC
Q 024790 2 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKY--DIGTGFGHFGIAVDD 79 (262)
Q Consensus 2 ~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~i~~~v~d 79 (262)
+||+|.|+|++++++||+++||++.......+.......++..++.. ..++|.++...... ..+.|++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~--~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGP--VQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTET--EEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCc--EEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 69999999999999999999999988766555666677787776533 56788776554322 267899999999999
Q ss_pred HHHHHHHHHHcCCeeecCC
Q 024790 80 VAKTVELIKAKGGKVTREP 98 (262)
Q Consensus 80 ~~~~~~~l~~~G~~~~~~~ 98 (262)
++++.++|+++|+++...+
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999987654
No 138
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.62 E-value=1.5e-14 Score=100.02 Aligned_cols=112 Identities=30% Similarity=0.412 Sum_probs=84.0
Q ss_pred eEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecCHHH
Q 024790 133 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYK 212 (262)
Q Consensus 133 ~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~dl~~ 212 (262)
|+.+.|+|++++++||+++|||++........ ....++..+ +..+.+....+......+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~--~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGG--AEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCC--EEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 78999999999999999999999887654211 233444422 466777654332222235678999999999999
Q ss_pred HHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEE
Q 024790 213 TAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 251 (262)
Q Consensus 213 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~ 251 (262)
++++|+++|+.+..++....+ ..+.+++.||+|+.|+|
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPW-GGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCC-CcEEEEEECCCCcEEeC
Confidence 999999999999887752222 35889999999999986
No 139
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.61 E-value=1.6e-14 Score=118.39 Aligned_cols=113 Identities=19% Similarity=0.300 Sum_probs=79.5
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcc-eeeEeeecCCCceeEEEeeecCCCCCCCCCCC-ceeEEEEeC
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKY-TNAFLGYGPEDSHFVIELTYNYGVDKYDIGTG-FGHFGIAVD 78 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~i~~~v~ 78 (262)
|+||+|.|+|++++.+||+++|||++......+.+.. ...|+..+.... .+.+... .+.| ++|+||.|+
T Consensus 146 i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~g~~~Hiaf~v~ 216 (303)
T TIGR03211 146 LDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNKAH--DIAFVGD-------PEPGKLHHVSFFLD 216 (303)
T ss_pred EEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCCCc--ccceecC-------CCCCceEEEEEEcC
Confidence 5899999999999999999999999876543323222 344554432211 1111111 1234 889999999
Q ss_pred C---HHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEE
Q 024790 79 D---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 122 (262)
Q Consensus 79 d---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~ 122 (262)
| +++++++|+++|+++..+|.....+..+++||.||+||.||+.
T Consensus 217 ~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~ 263 (303)
T TIGR03211 217 SWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETF 263 (303)
T ss_pred CHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEe
Confidence 7 5557889999999987666544333457899999999999998
No 140
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.61 E-value=2.1e-14 Score=100.05 Aligned_cols=108 Identities=24% Similarity=0.250 Sum_probs=73.5
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecC
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD 209 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~d 209 (262)
+|+|+.|.|+|++++.+||+ +|||++....+ . ..+...+ ..+..+.+.... ..+....++.+.++|
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~-----~-~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~d 67 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEGD-----G-LELRTAG--NDHRWARLLEGA-----RKRLAYLSFGIFEDD 67 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeecC-----c-eEEEecC--CCceEEEeecCC-----CCceeeEEEEeEhhh
Confidence 68999999999999999997 69999865421 1 1222211 133444443211 111223344555689
Q ss_pred HHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEec
Q 024790 210 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 254 (262)
Q Consensus 210 l~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 254 (262)
+++++++|+++|+++..++ .+++ .+.+|++||+||.|||..-
T Consensus 68 ~~~~~~~l~~~Gi~~~~~~--~~~~-~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 68 FAAFARHLEAAGVALAAAP--PGAD-PDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred HHHHHHHHHHcCCceecCC--CcCC-CCEEEEECCCCCEEEEecC
Confidence 9999999999999988665 2222 3578999999999999853
No 141
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.61 E-value=2.9e-14 Score=99.34 Aligned_cols=106 Identities=23% Similarity=0.321 Sum_probs=72.1
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCcee--EEEEeC
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGH--FGIAVD 78 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--i~~~v~ 78 (262)
|+||.|.|+|++++++||+ +|||++..+.+ ...+...+. .+..+.+.... ..++.| +.+.++
T Consensus 3 i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~------~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~ 66 (112)
T cd08344 3 IDHFALEVPDLEVARRFYE-AFGLDVREEGD------GLELRTAGN--DHRWARLLEGA-------RKRLAYLSFGIFED 66 (112)
T ss_pred eeEEEEecCCHHHHHHHHH-HhCCcEEeecC------ceEEEecCC--CceEEEeecCC-------CCceeeEEEEeEhh
Confidence 6899999999999999998 69999865431 122222222 22233333221 123334 455568
Q ss_pred CHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcC
Q 024790 79 DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 125 (262)
Q Consensus 79 d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 125 (262)
|+++++++|+++|+++..++ ... ..+.++|.||+||.|||....
T Consensus 67 d~~~~~~~l~~~Gi~~~~~~--~~~-~~~~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 67 DFAAFARHLEAAGVALAAAP--PGA-DPDGVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred hHHHHHHHHHHcCCceecCC--CcC-CCCEEEEECCCCCEEEEecCC
Confidence 99999999999999987654 222 345689999999999998543
No 142
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.61 E-value=3.4e-14 Score=99.27 Aligned_cols=108 Identities=27% Similarity=0.342 Sum_probs=77.2
Q ss_pred EEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCC-CCCCCCCceeEEEEeCC---
Q 024790 4 VVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD-KYDIGTGFGHFGIAVDD--- 79 (262)
Q Consensus 4 v~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~i~~~v~d--- 79 (262)
+.|.|+|+++|++||+++||+++..... . .+.+..++ . ..+.+....... ......+..|++|.+++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~----~--~~~~~~~~-~--~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP----T--FALFVLGS-G--VKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC----c--eEEEEeCC-C--cEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 6799999999999999999999765321 1 23333322 1 234444432221 11234467899999986
Q ss_pred HHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEE
Q 024790 80 VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 122 (262)
Q Consensus 80 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~ 122 (262)
++++++++.++|+++..+|....+| +.++|.|||||.|||+
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g--~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFG--YTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCc--cEEEEECCCCCEEEee
Confidence 8889999999999998877666543 5688999999999986
No 143
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.60 E-value=5.2e-14 Score=97.25 Aligned_cols=112 Identities=34% Similarity=0.435 Sum_probs=82.4
Q ss_pred eEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCCHHH
Q 024790 3 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAK 82 (262)
Q Consensus 3 hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d~~~ 82 (262)
|+.|.|+|++++.+||+++||+++...... ......++..+ . ..+.+...........+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~--~--~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG--G--TRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC--C--ceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 899999999999999999999998876531 12234444433 2 24555543322221245678899999999999
Q ss_pred HHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEE
Q 024790 83 TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 121 (262)
Q Consensus 83 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel 121 (262)
++++|.++|+.+..++.... ++.+.+++.||+|+.|+|
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEP-WGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCC-CCcEEEEEECCCCcEEeC
Confidence 99999999998876654222 367889999999999985
No 144
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.60 E-value=4.5e-14 Score=98.21 Aligned_cols=109 Identities=28% Similarity=0.348 Sum_probs=77.6
Q ss_pred EEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCCHHHHH
Q 024790 5 VYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTV 84 (262)
Q Consensus 5 ~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d~~~~~ 84 (262)
.|.|+|++++++||+++|||++..... .. ..+++..+ . ..+.+......... ...+..|++|.++|+++++
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~--~--~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG--G--AQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC--C--EEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 689999999999999999999877643 11 23444432 2 23444433222111 2345558999999999999
Q ss_pred HHHHHcCCe-eecCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024790 85 ELIKAKGGK-VTREPGPVKGGNTVIAFIEDPDGYKFELLE 123 (262)
Q Consensus 85 ~~l~~~G~~-~~~~~~~~~~~~~~~~~~~DP~G~~iel~~ 123 (262)
+++.+.|++ +..++....+ +.+.+++.||+|+.|+|+|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPW-GMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCc-ccEEEEEECCCCCEEEecC
Confidence 999999998 5555554443 5578899999999999974
No 145
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.60 E-value=6.7e-14 Score=96.79 Aligned_cols=117 Identities=27% Similarity=0.333 Sum_probs=83.7
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCCH
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDV 80 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d~ 80 (262)
+.|..|.++|++++++||+++|||+....... +......+..+.....- -+... +....+.....+.|.|+|+
T Consensus 10 i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~--~~~~y~~f~~~~~~~gG--~l~~~---~~~~p~~~~~~iy~~v~di 82 (127)
T COG3324 10 IVWFELPVSDLERAKAFYEKVFGWTFEDYFDM--GEMRYAVFPADGAGAGG--GLMAR---PGSPPGGGGWVIYFAVDDI 82 (127)
T ss_pred cEEEeeecCCHHHHHHHHHHhhCceecccccC--CCceEEEEECCCccccc--eeccC---CcCCCCCCCEEEEEecCCh
Confidence 46889999999999999999999999876443 22233333332211100 11111 1111113444689999999
Q ss_pred HHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcC
Q 024790 81 AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 125 (262)
Q Consensus 81 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 125 (262)
++..+|+.++|.+++.++.+.+. .++.+.+.||.||+|.|++..
T Consensus 83 d~~l~rv~~~GG~V~~p~~~~p~-~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 83 DATLERVVAAGGKVLRPKTEFPG-GGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred HHHHHHHHhcCCeEEecccccCC-ceEEEEEECCCCCEEEEeecC
Confidence 99999999999999999988885 678899999999999999753
No 146
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.59 E-value=7.3e-14 Score=98.53 Aligned_cols=108 Identities=21% Similarity=0.174 Sum_probs=74.4
Q ss_pred eEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCCHHH
Q 024790 3 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAK 82 (262)
Q Consensus 3 hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d~~~ 82 (262)
...|.|+|+++|++||++ |||++..+.. . ..+++..++ ..+.+....... ......+++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~--~---~~~~~~~~~----~~l~l~~~~~~~---~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQA--A---GYMILRRGD----LELHFFAHPDLD---PATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCC--C---CEEEEEcCC----EEEEEEecCcCC---CCCCcceEEEEeCCHHH
Confidence 357899999999999999 9999876532 1 123333332 234444322111 11223468999999999
Q ss_pred HHHHHHHcCCeee-------cCCcccCCCCeEEEEEECCCCCEEEEEEc
Q 024790 83 TVELIKAKGGKVT-------REPGPVKGGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 83 ~~~~l~~~G~~~~-------~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 124 (262)
++++|+++|+++. .++...++ +.+.++|.|||||.|+|.+.
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPW-GMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCC-ceeEEEEECCCCCEEEeecC
Confidence 9999999999742 23333333 67889999999999999874
No 147
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1e-14 Score=102.19 Aligned_cols=72 Identities=26% Similarity=0.344 Sum_probs=54.6
Q ss_pred ceEEEEeeecCCcccc-----c----CCceeEEEEEecCHHHHHHHHHHhCCeeecCCccCCCCcc-eEEEEeCCCCcEE
Q 024790 180 NVVLELTYNYGVTDYD-----K----GNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINT-KITACLDPDGWKT 249 (262)
Q Consensus 180 ~~~~~l~~~~~~~~~~-----~----~~~~~~i~~~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~~DP~G~~i 249 (262)
+..++|..+++....+ + +.|.+||||.|+|++.+.++|++.|+++.+.| +.|.. .++++.||||++|
T Consensus 87 ~~~~ELthn~Gtes~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~---~dGk~K~iaF~~dpDgywi 163 (170)
T KOG2944|consen 87 NAKLELTHNWGTESPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKL---KDGKMKPIAFLHDPDGYWI 163 (170)
T ss_pred cCceeeecCCCCCCCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecC---CCccccceeEEECCCCCeE
Confidence 4556777655544322 1 24999999999999999999999999987554 23333 5799999999999
Q ss_pred EEEec
Q 024790 250 VFVDN 254 (262)
Q Consensus 250 e~~~~ 254 (262)
|+.-.
T Consensus 164 ei~~~ 168 (170)
T KOG2944|consen 164 EIELE 168 (170)
T ss_pred EEeec
Confidence 99764
No 148
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=5.5e-14 Score=99.75 Aligned_cols=113 Identities=26% Similarity=0.265 Sum_probs=76.5
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCC-----C-CC-CCCCCCceeE
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG-----V-DK-YDIGTGFGHF 73 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~-~~-~~~~~~~~~i 73 (262)
+.+|.|.|+|+++|++||++ |||+...... ... ..++..++ . ..+.+..... . +. ...+.+..|+
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~--~~~--~~~~~~~~-~--~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l 72 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFS--DEK--AACMVISD-N--IFVMLLTEDFFQTFTPKPIADTKKSTEVLI 72 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccC--CCC--eEEEEECC-c--eEEEEEcHHHHhhccCCCcccCCCCCeEEE
Confidence 46899999999999999987 8999764322 111 23333332 1 2333332110 0 00 0123345689
Q ss_pred EEEeC---CHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024790 74 GIAVD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 123 (262)
Q Consensus 74 ~~~v~---d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~ 123 (262)
+|.|+ ++++++++++++|+++..+|.... ..+.++|.|||||.||++.
T Consensus 73 ~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~--~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 73 SLSADSREEVDELVEKALAAGGKEFREPQDHG--FMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred EEeCCCHHHHHHHHHHHHHCCCcccCCcccCC--ceEEEEEECCCCCEEEEEE
Confidence 99998 588999999999999987776554 3467899999999999974
No 149
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.58 E-value=7.7e-14 Score=113.89 Aligned_cols=115 Identities=27% Similarity=0.426 Sum_probs=79.3
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCC-
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD- 79 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d- 79 (262)
|+||+|.|+|++++++||+++||+++........+.....|+..+...+ .+.+.. ..+.+++|+||.|+|
T Consensus 137 i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~Hiaf~v~d~ 207 (294)
T TIGR02295 137 LDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGGVH--DIALTN-------GNGPRLHHIAYWVHDP 207 (294)
T ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCCcC--ceEeec-------CCCCceeeEEEEcCCH
Confidence 5899999999999999999999999876543222322234443322211 222221 123588999999998
Q ss_pred --HHHHHHHHHHcCCe--eecCCcccCCCCeEEEEEECCCCCEEEEEEc
Q 024790 80 --VAKTVELIKAKGGK--VTREPGPVKGGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 80 --~~~~~~~l~~~G~~--~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 124 (262)
+++++++|+++|++ +...|.....+...++|+.||+|+.||++..
T Consensus 208 ~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~ 256 (294)
T TIGR02295 208 LNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTG 256 (294)
T ss_pred HHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEec
Confidence 45568999999987 5444433332345679999999999999864
No 150
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.58 E-value=8.1e-14 Score=113.24 Aligned_cols=114 Identities=25% Similarity=0.401 Sum_probs=80.8
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCC-c--ceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEe
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEE-K--YTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 77 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v 77 (262)
|+||+|.|+|++++.+||+++|||++........+ + +..+|+..+.... .+.+... ....+++|++|.|
T Consensus 143 l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~--~~~l~~~------~~~~~~~Hiaf~v 214 (286)
T TIGR03213 143 LGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHH--SLAFAAG------PSEKRLNHLMLEV 214 (286)
T ss_pred ccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcc--eEEEecC------CCCCceEEEEEEc
Confidence 68999999999999999999999998765322111 1 2345665544322 2222211 1245789999999
Q ss_pred CCHHH---HHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024790 78 DDVAK---TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 123 (262)
Q Consensus 78 ~d~~~---~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~ 123 (262)
+|.++ ++++|+++|+ ....+.....+...++|+.||+|++||+..
T Consensus 215 ~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 215 DTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred CCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 98766 7999999999 443443333346788999999999999985
No 151
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=4.3e-14 Score=98.58 Aligned_cols=104 Identities=23% Similarity=0.252 Sum_probs=73.1
Q ss_pred EEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecCHHHH
Q 024790 134 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKT 213 (262)
Q Consensus 134 v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~dl~~~ 213 (262)
..|.|+|++++++||++ |||++....+ ...++..+ ...+.+..... ....+..+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~----~~~l~l~~~~~----~~~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLG----NCAFYLQDYYV----KDWAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcC----CEEEEeecCCC----cccccCCEEEEEECCHHHH
Confidence 46789999999999987 9999976531 22444432 23344432111 1123346789999999999
Q ss_pred HHHHHHhCCeee-----cCCccCCCCcceEEEEeCCCCcEEEEEe
Q 024790 214 AEAIKLFGGKVT-----REPGPLPGINTKITACLDPDGWKTVFVD 253 (262)
Q Consensus 214 ~~~l~~~g~~~~-----~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 253 (262)
+++|+++|+++. .++...++| .+.++++|||||+|+|.|
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g-~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWW-GREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCC-cEEEEEECCCccEEEeeC
Confidence 999999998753 234444554 489999999999999865
No 152
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=3.4e-14 Score=106.14 Aligned_cols=121 Identities=39% Similarity=0.736 Sum_probs=105.3
Q ss_pred CCCCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcC-----------ccceeeeeccCCCCcceEEEEeeecCCcccc
Q 024790 127 TPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-----------YKYTIAMMGYGPEDKNVVLELTYNYGVTDYD 195 (262)
Q Consensus 127 ~~~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 195 (262)
...+.-|+++.|.|.+++++||+++|||++.+..+++. +.|+-.+++++|.++|..++|+++++...+.
T Consensus 14 ~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Ye 93 (299)
T KOG2943|consen 14 DTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYE 93 (299)
T ss_pred cchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCcccee
Confidence 34678899999999999999999999999998877765 6888899999999999999999999999999
Q ss_pred cCCceeEEEEEecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccc
Q 024790 196 KGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 196 ~~~~~~~i~~~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 256 (262)
-|.++.||.+.++|+-..++.++..|.+.. ..-++.+.||||+.|+++++.+
T Consensus 94 lGndfg~i~I~s~dv~~~ve~v~~p~~~~~---------g~~~~~v~dPdGykF~l~~~~p 145 (299)
T KOG2943|consen 94 LGNDFGGITIASDDVFSKVEKVNAPGGKGS---------GCGIAFVKDPDGYKFYLIDRGP 145 (299)
T ss_pred ccCCcccEEEeHHHHHHHHHHhcCcCCccc---------ceEEEEEECCCCcEEEEeccCC
Confidence 999999999999999988888887665321 1356889999999999997543
No 153
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.55 E-value=1.4e-13 Score=97.15 Aligned_cols=110 Identities=21% Similarity=0.197 Sum_probs=77.0
Q ss_pred EEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCC-----cc-cccCCceeEEEEEe
Q 024790 134 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGV-----TD-YDKGNAYAQIAIGT 207 (262)
Q Consensus 134 v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~-~~~~~~~~~i~~~v 207 (262)
|.|.|+|++++.+||+++|||++.... .. ...++.. .+..+.+...... .+ ...+.+..+++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~--~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---ND--GVAFFQL----GGLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CC--ceEEEEc----CCeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 689999999999999999999986551 11 2233432 1244555432110 00 11223444566654
Q ss_pred ---cCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEe
Q 024790 208 ---DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 253 (262)
Q Consensus 208 ---~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 253 (262)
+|++++++++++.|+++..+|...+++ ++.++++||+||+|||..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFWG-GYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCCC-ceEEEEECCCCCEEEEee
Confidence 689999999999999999887766665 588999999999999975
No 154
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.54 E-value=6.3e-14 Score=97.05 Aligned_cols=95 Identities=23% Similarity=0.269 Sum_probs=75.5
Q ss_pred eeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcc--cccCCceeEEEEEecC
Q 024790 132 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD--YDKGNAYAQIAIGTDD 209 (262)
Q Consensus 132 ~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~i~~~v~d 209 (262)
+||.+.|+|++++++||+++||++.......+.......++..+. +...++|++..+..+ ...+.+++||+|.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~--~~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGD--GPVQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETT--ETEEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCC--CcEEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 599999999999999999999999877655555555666666442 237889998655432 2367899999999999
Q ss_pred HHHHHHHHHHhCCeeecCC
Q 024790 210 VYKTAEAIKLFGGKVTREP 228 (262)
Q Consensus 210 l~~~~~~l~~~g~~~~~~~ 228 (262)
+++++++|+++|+++...+
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999988654
No 155
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.53 E-value=2.9e-13 Score=94.40 Aligned_cols=104 Identities=23% Similarity=0.289 Sum_probs=71.4
Q ss_pred EEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCCHHHH
Q 024790 4 VVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKT 83 (262)
Q Consensus 4 v~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d~~~~ 83 (262)
..|.|+|++++++||++ |||++..+.. ..+++..+. . .+.+..... ... .+-.+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~~--~--~l~l~~~~~-~~~---~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLGN--C--AFYLQDYYV-KDW---AENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcCC--E--EEEeecCCC-ccc---ccCCEEEEEECCHHHH
Confidence 35789999999999988 9999986532 235555442 2 223322111 111 1234689999999999
Q ss_pred HHHHHHcCCeee-----cCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024790 84 VELIKAKGGKVT-----REPGPVKGGNTVIAFIEDPDGYKFELLE 123 (262)
Q Consensus 84 ~~~l~~~G~~~~-----~~~~~~~~~~~~~~~~~DP~G~~iel~~ 123 (262)
+++|+++|+++. .++....+ +.+.++|.|||||.|+|.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~-g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPW-WGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCC-CcEEEEEECCCccEEEeeC
Confidence 999999998643 23333344 5688999999999999863
No 156
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.52 E-value=2.8e-13 Score=95.54 Aligned_cols=110 Identities=25% Similarity=0.341 Sum_probs=75.2
Q ss_pred EEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecC------CCCCCCCCCCceeEEEEe
Q 024790 4 VVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY------GVDKYDIGTGFGHFGIAV 77 (262)
Q Consensus 4 v~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~i~~~v 77 (262)
|.|.|+|++++.+||+++|||++..+. .. ...++..+. ..+.+.... .......+.+..++++.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~--~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---ND--GVAFFQLGG----LVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CC--ceEEEEcCC----eEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 789999999999999999999986551 11 233444332 234443211 111112222334466655
Q ss_pred ---CCHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024790 78 ---DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 123 (262)
Q Consensus 78 ---~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~ 123 (262)
+|++++++++++.|+++..++...++ +.+.+++.||+||+||+..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFW-GGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCC-CceEEEEECCCCCEEEEee
Confidence 57999999999999999877665554 4778999999999999974
No 157
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.51 E-value=3.4e-13 Score=103.66 Aligned_cols=119 Identities=19% Similarity=0.225 Sum_probs=92.4
Q ss_pred CCCCCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcc-cccCCceeEEE
Q 024790 126 PTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD-YDKGNAYAQIA 204 (262)
Q Consensus 126 ~~~~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~i~ 204 (262)
..+..++.++|.|+|++++..||+++||+++..+.+ ....+..+ +...+.|.+...... .+...|..|++
T Consensus 6 ~~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vg---g~~LL~L~q~~~a~~~~~~~aGLyH~A 76 (265)
T COG2514 6 TTPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVG---GTPLLTLEQFPDARRPPPRAAGLYHTA 76 (265)
T ss_pred CCCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeC---CEEEEEEEeCCCCCCCCccccceeeee
Confidence 345678999999999999999999999999987654 22344433 236677776544433 34567999999
Q ss_pred EEec---CHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccc
Q 024790 205 IGTD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 205 ~~v~---dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 256 (262)
|.++ |+.+.+.++.+.|+.+. ++.++.. .-..|+.||+||-||++.+++
T Consensus 77 fLlP~r~~L~~~l~hl~~~~~~l~-Ga~DH~v--SEAlYl~DPEGNGIEiYaDrp 128 (265)
T COG2514 77 FLLPTREDLARVLNHLAEEGIPLV-GASDHLV--SEALYLEDPEGNGIEIYADRP 128 (265)
T ss_pred eecCCHHHHHHHHHHHHhcCCccc-ccCcchh--heeeeecCCCCCeEEEEecCC
Confidence 9986 67788889999999887 5566666 467999999999999999865
No 158
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=2.2e-12 Score=90.59 Aligned_cols=117 Identities=36% Similarity=0.537 Sum_probs=77.9
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCC--------------------CcceeeEeeecCCCceeEEEeeecCC
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPE--------------------EKYTNAFLGYGPEDSHFVIELTYNYG 60 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~~~~~~~ 60 (262)
++|.++.+.|+.++..||+.++|+.+........ .... .|....+. .+++..+-+
T Consensus 23 ~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~-v~~~~~~~----~~ELthn~G 97 (170)
T KOG2944|consen 23 LQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVS-VFVFSRNA----KLELTHNWG 97 (170)
T ss_pred hhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCc-eEEecccC----ceeeecCCC
Confidence 3577888888888888888888887764432111 1111 33333322 344444322
Q ss_pred CC--C---CC----CCCCceeEEEEeCCHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEc
Q 024790 61 VD--K---YD----IGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 61 ~~--~---~~----~~~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 124 (262)
.. + +. .+.|++||||.|+|+.+++.+|+++|++..+.+.+.. .-..+|+.||||+.|||...
T Consensus 98 tes~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk--~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 98 TESPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGK--MKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred CCCCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCcc--ccceeEEECCCCCeEEEeec
Confidence 11 1 11 2359999999999999999999999999765543332 23678899999999999854
No 159
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.41 E-value=1.7e-12 Score=98.78 Aligned_cols=98 Identities=20% Similarity=0.326 Sum_probs=74.3
Q ss_pred CCceeEEeeec--ChhhhHHHHHHhcCCeeeeeccCcC--ccceeeeeccCCCCcceEEEEeeecCC-cc--------cc
Q 024790 129 EPLCQVMLRVG--DLDRSINFYEQAFGMELLRKRDNPE--YKYTIAMMGYGPEDKNVVLELTYNYGV-TD--------YD 195 (262)
Q Consensus 129 ~~~~~v~l~v~--d~~~~~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~--------~~ 195 (262)
.+++||++.|+ |++++++||+++|||+.......++ .......+.. ..+...++|.+.... .. ..
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~--~~g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLAS--PDGKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEEC--CCCcEEEEEecCCCCCCccHHHHHHHHh
Confidence 36899999999 9999999999999999887655433 2233333332 235677777764432 11 22
Q ss_pred cCCceeEEEEEecCHHHHHHHHHHhCCeeecCC
Q 024790 196 KGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREP 228 (262)
Q Consensus 196 ~~~~~~~i~~~v~dl~~~~~~l~~~g~~~~~~~ 228 (262)
.++|++||||.|+|+++++++|+++|++++..|
T Consensus 80 ~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P 112 (191)
T cd07250 80 GGAGVQHIALATDDIFATVAALRARGVEFLPIP 112 (191)
T ss_pred CCCceeEEEEECCCHHHHHHHHHHcCCeeccCc
Confidence 468999999999999999999999999999877
No 160
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.37 E-value=6.5e-12 Score=95.56 Aligned_cols=98 Identities=27% Similarity=0.381 Sum_probs=71.2
Q ss_pred CceEEEEeC--CHHHHHHHHHhhcCcEEEEEecCCC--CcceeeEeeecCCCceeEEEeeecCCC-C--------CCCCC
Q 024790 1 MLHVVYRVG--DLDRTIKFYTECLGMKLLRKRDIPE--EKYTNAFLGYGPEDSHFVIELTYNYGV-D--------KYDIG 67 (262)
Q Consensus 1 l~hv~l~v~--d~~~a~~fY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~-~--------~~~~~ 67 (262)
|+||++.|+ |++++.+||+++|||+.......++ .......+..+. ..+.+++..+... . ....+
T Consensus 4 iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~--g~i~l~L~~~~~~~~~s~~~~fl~~~~G 81 (191)
T cd07250 4 IDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPD--GKIRIPLNEPASGKRKSQIQEFLEYYGG 81 (191)
T ss_pred eeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCC--CcEEEEEecCCCCCCccHHHHHHHHhCC
Confidence 689999999 9999999999999999887764433 222233333222 3445666653321 1 11246
Q ss_pred CCceeEEEEeCCHHHHHHHHHHcCCeeecCCcc
Q 024790 68 TGFGHFGIAVDDVAKTVELIKAKGGKVTREPGP 100 (262)
Q Consensus 68 ~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~ 100 (262)
.|++||||.|+|+++++++|+++|+++..+|..
T Consensus 82 ~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~~ 114 (191)
T cd07250 82 AGVQHIALATDDIFATVAALRARGVEFLPIPDN 114 (191)
T ss_pred CceeEEEEECCCHHHHHHHHHHcCCeeccCchh
Confidence 899999999999999999999999999876643
No 161
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.30 E-value=5.1e-11 Score=78.90 Aligned_cols=116 Identities=27% Similarity=0.313 Sum_probs=76.1
Q ss_pred ceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCC--CCC--CCCCcee--EEE
Q 024790 2 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD--KYD--IGTGFGH--FGI 75 (262)
Q Consensus 2 ~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~--~~~~~~~--i~~ 75 (262)
=|++|.|+|++++++||.++||++.-.+.+ .|+.++-..+.++.-+....... ..- .+.-..| +.+
T Consensus 6 FHLA~pV~Dl~~tr~FYgevlG~~~GRstd--------~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGvVl 77 (138)
T COG3565 6 FHLAIPVNDLDETRRFYGEVLGCKEGRSTD--------TWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGVVL 77 (138)
T ss_pred eEEeeeccccHHHHhhhhhhcccccccccc--------eEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceEEE
Confidence 389999999999999999999998643322 23333322233333332211100 000 1112233 566
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCccc---CCCCeEEEEEECCCCCEEEEEEcC
Q 024790 76 AVDDVAKTVELIKAKGGKVTREPGPV---KGGNTVIAFIEDPDGYKFELLERG 125 (262)
Q Consensus 76 ~v~d~~~~~~~l~~~G~~~~~~~~~~---~~~~~~~~~~~DP~G~~iel~~~~ 125 (262)
.++|--++.++|+++|+....+|.-. ..|..+.+++.||.||.+|+-...
T Consensus 78 ~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR 130 (138)
T COG3565 78 PVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFR 130 (138)
T ss_pred EHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeeccc
Confidence 77788999999999999887777533 235678899999999999987543
No 162
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.29 E-value=4.2e-10 Score=79.35 Aligned_cols=118 Identities=19% Similarity=0.162 Sum_probs=88.4
Q ss_pred EEEEeC-CHHHHHHHHHhhcCcEEEEEecCCC----------CcceeeEeeecCCCceeEEEeeecCCCCCCCCCC-Cce
Q 024790 4 VVYRVG-DLDRTIKFYTECLGMKLLRKRDIPE----------EKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGT-GFG 71 (262)
Q Consensus 4 v~l~v~-d~~~a~~fY~~~lG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~ 71 (262)
.-|..+ |.++|++||+++||.++..+....+ +...++.+.++.. .+.+....+......+. .-.
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~----~im~sd~~~~~~~~~~~~~s~ 79 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGS----TIMLSDAFPDMGATEGGGTSL 79 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCE----EEEEecCCCccCcccCCCeeE
Confidence 357788 9999999999999999988765555 5667777777743 23333322222222323 234
Q ss_pred eEEEEeCCHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCC
Q 024790 72 HFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 126 (262)
Q Consensus 72 ~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~ 126 (262)
.|.+.++|++++.+++.+.|+++..++....+ +.+...+.||.|+.|.|.....
T Consensus 80 ~l~~~~~d~da~f~~a~~aGa~v~mpl~~~fw-G~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 80 SLDLYVEDVDAVFERAAAAGATVVMPLEDTFW-GDRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEEehHHHHHHHHHHhcCCeEEecchhcCc-ccceEEEECCCCCEEEEecCcc
Confidence 58888899999999999999999999888887 5677789999999999986543
No 163
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.28 E-value=5.6e-11 Score=78.72 Aligned_cols=117 Identities=21% Similarity=0.223 Sum_probs=75.3
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCc---c-cccCCceeEE--
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT---D-YDKGNAYAQI-- 203 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~-~~~~~~~~~i-- 203 (262)
.+-|+++.|.|++++++||.++||++..++.+ .+.-+..= +-+.+..+....... . ...+-..-|+
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd------~wvdfDfy--GHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD------TWVDFDFY--GHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccc------eEEEeeec--ccEEEEEecCCcccccCcccCCCCCCCccceE
Confidence 35699999999999999999999999876543 11111110 012222222111000 0 1111123344
Q ss_pred EEEecCHHHHHHHHHHhCCeeecCCccC---CCCcceEEEEeCCCCcEEEEEec
Q 024790 204 AIGTDDVYKTAEAIKLFGGKVTREPGPL---PGINTKITACLDPDGWKTVFVDN 254 (262)
Q Consensus 204 ~~~v~dl~~~~~~l~~~g~~~~~~~~~~---~~~~~~~~~~~DP~G~~ie~~~~ 254 (262)
-|.++|--++.+||+++|+.+..+|.-. ..|..+.+++.||+||.+|+-.-
T Consensus 76 Vl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~f 129 (138)
T COG3565 76 VLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGF 129 (138)
T ss_pred EEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecc
Confidence 3557888999999999999999888443 22446889999999999998543
No 164
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.25 E-value=2.3e-10 Score=81.55 Aligned_cols=112 Identities=17% Similarity=0.058 Sum_probs=74.8
Q ss_pred EEeee-cChhhhHHHHHHhcCCeeeeeccCcC----------ccceeeeeccCCCCcceEEEEeeecCCcccccCCceeE
Q 024790 134 VMLRV-GDLDRSINFYEQAFGMELLRKRDNPE----------YKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQ 202 (262)
Q Consensus 134 v~l~v-~d~~~~~~FY~~~lG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 202 (262)
..|.+ .|.+++++||+++||+++......+. +......+..+ +..+.+....+.... .......
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~----g~~l~~~d~~~~~~~-~~~~~~~ 77 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIG----GQRLMASDGGPGFPF-TFGNGIS 77 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEEC----CEEEEEEcCCCCCCC-CCCCCEE
Confidence 34667 89999999999999999987653211 11122233322 234444432222111 1334567
Q ss_pred EEEEecC---HHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEE
Q 024790 203 IAIGTDD---VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 252 (262)
Q Consensus 203 i~~~v~d---l~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~ 252 (262)
+++.|+| +++++++|.+.| +++.++...++|. +.++++||+|+.|+|.
T Consensus 78 l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~-~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 78 LSVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSP-LFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEEECCCHHHHHHHHHHHhcCC-eEeccchhcCccc-ccEEEECCCCCEEEeC
Confidence 8888875 778889987765 8888888888864 7899999999999973
No 165
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.21 E-value=7.9e-10 Score=78.00 Aligned_cols=118 Identities=17% Similarity=0.173 Sum_probs=85.6
Q ss_pred EEeeec-ChhhhHHHHHHhcCCeeeeeccCcC----------ccceeeeeccCCCCcceEEEEeeecCCccccc-CCcee
Q 024790 134 VMLRVG-DLDRSINFYEQAFGMELLRKRDNPE----------YKYTIAMMGYGPEDKNVVLELTYNYGVTDYDK-GNAYA 201 (262)
Q Consensus 134 v~l~v~-d~~~~~~FY~~~lG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~ 201 (262)
-.|..+ |.+++.+||+++||.++..+....+ +....+.+..+ ...+-+....+...... ++...
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~----g~~im~sd~~~~~~~~~~~~~s~ 79 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG----GSTIMLSDAFPDMGATEGGGTSL 79 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC----CEEEEEecCCCccCcccCCCeeE
Confidence 356778 9999999999999999988766554 22223333322 23333333332222222 33456
Q ss_pred EEEEEecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccc
Q 024790 202 QIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 202 ~i~~~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 256 (262)
.|.+.++|+++..+++.+.|+++..++.+..+|. ++..++||.|+.|-|...+.
T Consensus 80 ~l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~-r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 80 SLDLYVEDVDAVFERAAAAGATVVMPLEDTFWGD-RYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEEehHHHHHHHHHHhcCCeEEecchhcCccc-ceEEEECCCCCEEEEecCcc
Confidence 6777788999999999999999999999999975 89999999999999987664
No 166
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=99.21 E-value=1.7e-10 Score=86.74 Aligned_cols=147 Identities=22% Similarity=0.310 Sum_probs=84.9
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCC--CC---CC-------CCCC
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG--VD---KY-------DIGT 68 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~---~~-------~~~~ 68 (262)
|+||.+.|+|++++.++|++.|||++......+..+..+..+.+++. +||+....+ .. .. ..+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~----YlEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDG----YLELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSS----EEEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCc----eEEEEEeCCcccccccccceechhhcCCC
Confidence 68999999999999999988899999988777766777888888654 566654221 11 11 1467
Q ss_pred CceeEEEEeCCHHHHHHHHHHcCCeeecCCcccCCCC--eEEEEEECC----CCCEEEEEEcC-CC---------CCCce
Q 024790 69 GFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGN--TVIAFIEDP----DGYKFELLERG-PT---------PEPLC 132 (262)
Q Consensus 69 ~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~--~~~~~~~DP----~G~~iel~~~~-~~---------~~~~~ 132 (262)
|+..+|+.++|+++..+++.+.|+..... ...+.+. -+.+++.++ .+..-.+++.. +. ..+|.
T Consensus 77 g~~~~~l~t~d~~~~~~~l~~~G~~~~~r-~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~i~ 155 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARLRAAGLDAGSR-VRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALGIT 155 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHHHTTT-EEEEE-EEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEEEE
T ss_pred CeEEEEEecCCHHHHHHHHHhcCCCCCCc-CcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccceEE
Confidence 89999999999999999999999752211 1111111 133334443 23444555332 22 23789
Q ss_pred eEEeeecChhhhHHHHHHhc
Q 024790 133 QVMLRVGDLDRSINFYEQAF 152 (262)
Q Consensus 133 ~v~l~v~d~~~~~~FY~~~l 152 (262)
+|.+.++|++++.++|.++|
T Consensus 156 ~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 156 RVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp EEEEEETTHHHHHHHHHHH-
T ss_pred EEEEEeCCHHHHHHHHHhhC
Confidence 99999999999999999875
No 167
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.20 E-value=2.4e-10 Score=77.16 Aligned_cols=113 Identities=21% Similarity=0.220 Sum_probs=77.4
Q ss_pred ceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCc-------ccccCCceeEE
Q 024790 131 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT-------DYDKGNAYAQI 203 (262)
Q Consensus 131 ~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~i 203 (262)
...|+|.|+|++++.+||+. |||+......... ..+++-. ....+-|.....-. .....+.-..|
T Consensus 4 mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi~~----~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli 75 (133)
T COG3607 4 MIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMIIS----DNIFVMLLEEARFQTFTKRQIADTTKSREVLI 75 (133)
T ss_pred EEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEEEe----ccEEEEEeccHHhhhhcccccccccCCceEEE
Confidence 45789999999999999976 9999876544332 1122211 12223333211100 12234566788
Q ss_pred EEEec---CHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEe
Q 024790 204 AIGTD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 253 (262)
Q Consensus 204 ~~~v~---dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 253 (262)
+|.+. ++++++++..++|++...+|.+... .+..-+.|||||.||++-
T Consensus 76 ~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gf--MYg~~fqDpDGh~wE~l~ 126 (133)
T COG3607 76 SLSAGSREEVDELVDKALEAGGKPANEPQDEGF--MYGRSFQDPDGHVWEFLW 126 (133)
T ss_pred EeccCcHHHHHHHHHHHHHcCCCCCCCcccccc--ccceeeeCCCCCeEEEEE
Confidence 88875 7899999999999999887766655 567789999999999974
No 168
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.18 E-value=1.8e-09 Score=76.92 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=74.2
Q ss_pred EEEEe-CCHHHHHHHHHhhcCcEEEEEecC----------CCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCcee
Q 024790 4 VVYRV-GDLDRTIKFYTECLGMKLLRKRDI----------PEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGH 72 (262)
Q Consensus 4 v~l~v-~d~~~a~~fY~~~lG~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 72 (262)
..|.+ .|.++|++||+++||+++...... ..+....+.+.+++. .+.+......... .+..-.+
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~----~l~~~d~~~~~~~-~~~~~~~ 77 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQ----RLMASDGGPGFPF-TFGNGIS 77 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCE----EEEEEcCCCCCCC-CCCCCEE
Confidence 35677 999999999999999999876531 123344556665542 2333322111111 1223346
Q ss_pred EEEEeCC---HHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEE
Q 024790 73 FGIAVDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 121 (262)
Q Consensus 73 i~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel 121 (262)
+++.|+| +++++++|.+.| ++..++...++ +.+...+.||+|+.|+|
T Consensus 78 l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~-g~~~~~v~Dp~G~~W~i 127 (128)
T cd06588 78 LSVECDSEEEADRLFEALSEGG-TVLMPLQKTFW-SPLFGWVTDRFGVSWQI 127 (128)
T ss_pred EEEECCCHHHHHHHHHHHhcCC-eEeccchhcCc-ccccEEEECCCCCEEEe
Confidence 8999886 667888876655 88778777766 56778899999999987
No 169
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.16 E-value=1.2e-09 Score=91.20 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=87.5
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcc------cccCCceeEE
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD------YDKGNAYAQI 203 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~i 203 (262)
+++|+.+.|+|++++.+||.+.|||+........... ....+.. +...+.|........ ..+++++.|+
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~----G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~i 76 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQ----GQINFVLTAPYSSDSPAADFAAKHGDGVKDV 76 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEe----CCEEEEEecCCCCCchHHHHHHhCCCceEEE
Confidence 5799999999999999999999999998763222221 2222321 345677765432221 1357899999
Q ss_pred EEEecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEecccc
Q 024790 204 AIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 257 (262)
Q Consensus 204 ~~~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~~ 257 (262)
+|.|+|+++++++++++|++++.+|.....+..++..+.-+.|..+-|+++..+
T Consensus 77 af~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~ 130 (353)
T TIGR01263 77 AFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGY 130 (353)
T ss_pred EEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCC
Confidence 999999999999999999999988765411223455567788888888876543
No 170
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.01 E-value=1.3e-09 Score=77.52 Aligned_cols=121 Identities=19% Similarity=0.195 Sum_probs=74.2
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccc---eeeeeccCCCCcceEEEE--------eeecCCccccc-C
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKY---TIAMMGYGPEDKNVVLEL--------TYNYGVTDYDK-G 197 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l--------~~~~~~~~~~~-~ 197 (262)
++.|+.+.|+|++++.+||+++|||++........... ...+.............. ........... .
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGG 81 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCc
Confidence 57899999999999999999999999987654332211 111111100000000000 00000000011 1
Q ss_pred -CceeEEEEEecC---HHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEe
Q 024790 198 -NAYAQIAIGTDD---VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 253 (262)
Q Consensus 198 -~~~~~i~~~v~d---l~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 253 (262)
.+..|+++.+++ ...........|..+...+. ..+ +..+|++||||+.||+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~--~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 82 DLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRG--GVHVYFRDPDGILIELAT 138 (138)
T ss_pred hhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCc--ceEEEEECCCCcEEEeeC
Confidence 347899999998 66777788888888766544 333 238999999999999974
No 171
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.96 E-value=7e-09 Score=70.18 Aligned_cols=114 Identities=25% Similarity=0.282 Sum_probs=70.8
Q ss_pred eEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCC---CCC----CCCCceeEEE
Q 024790 3 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD---KYD----IGTGFGHFGI 75 (262)
Q Consensus 3 hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~----~~~~~~~i~~ 75 (262)
.|+|.|+|++++++||+. |||+.-... .+.. .+.+-+++ +. ...|.....-. ... ....-.-|++
T Consensus 6 FvNLPVkDL~~S~~Fy~a-lGfk~Npq~--sde~--a~~mi~~~-ni--~vMLL~~~~fq~F~~~~i~dt~~s~evli~l 77 (133)
T COG3607 6 FVNLPVKDLEASKAFYTA-LGFKFNPQF--SDED--AACMIISD-NI--FVMLLEEARFQTFTKRQIADTTKSREVLISL 77 (133)
T ss_pred EEecchhhHHHHHHHHHH-hCcccCCCc--cccc--ceeEEEec-cE--EEEEeccHHhhhhcccccccccCCceEEEEe
Confidence 578899999999999987 999876542 2222 22222222 11 22222211100 000 1112223788
Q ss_pred EeCC---HHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCC
Q 024790 76 AVDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 126 (262)
Q Consensus 76 ~v~d---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~ 126 (262)
.+.+ ++++.++..++|.++..++.+.. .-+..-|.|||||.||++.-.+
T Consensus 78 s~~s~eevd~~v~ka~eaGGk~~~~~~d~g--fMYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 78 SAGSREEVDELVDKALEAGGKPANEPQDEG--FMYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred ccCcHHHHHHHHHHHHHcCCCCCCCccccc--cccceeeeCCCCCeEEEEEeCH
Confidence 8774 78899999999999987766554 4455667999999999986543
No 172
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.96 E-value=8e-08 Score=64.80 Aligned_cols=114 Identities=26% Similarity=0.362 Sum_probs=68.1
Q ss_pred ceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCCHH
Q 024790 2 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVA 81 (262)
Q Consensus 2 ~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d~~ 81 (262)
-+-+|.|+|.+...+||++.|||++..++. ..++++.......++++-.+...........-++.+.+.|++..
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~ 75 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPK 75 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHH
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHH
Confidence 467899999999999999999999998876 56777665555667666654322223334457889999999866
Q ss_pred HHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcC
Q 024790 82 KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 125 (262)
Q Consensus 82 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 125 (262)
++ +.|.++|.++.. -..+..++.+...+|+|..|.++...
T Consensus 76 EI-e~LLar~~~~~~---l~kg~~gyAfe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 76 EI-EALLARGAQYDR---LYKGKNGYAFEAVSPEGDRFLLHAED 115 (125)
T ss_dssp HH-HHHHHC-S--SE---EEE-SSSEEEEEE-TT--EEEEE--S
T ss_pred HH-HHHHhcccccce---eEEcCCceEEEEECCCCCEEEEEEcC
Confidence 64 445566655421 12222556677789999999888543
No 173
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.95 E-value=2.3e-09 Score=76.31 Aligned_cols=119 Identities=25% Similarity=0.427 Sum_probs=70.7
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcc-eeeEeeecCC--CceeEEEee------ecCCCCC---CCCC-
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKY-TNAFLGYGPE--DSHFVIELT------YNYGVDK---YDIG- 67 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~l~~~------~~~~~~~---~~~~- 67 (262)
++||+|.|+|+++|++||+++||+++........... ....+..... ......... ....... ...+
T Consensus 3 l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (138)
T COG0346 3 IHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGGD 82 (138)
T ss_pred eEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCch
Confidence 5899999999999999999999999988654222111 0111111110 000000000 0000000 0011
Q ss_pred CCceeEEEEeCC---HHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEE
Q 024790 68 TGFGHFGIAVDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 122 (262)
Q Consensus 68 ~~~~~i~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~ 122 (262)
.+..|+++.+++ ...........|..+..... ... + ..+|+.||||+.+|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~-~-~~~~~~dp~g~~~e~~ 137 (138)
T COG0346 83 LGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRG-G-VHVYFRDPDGILIELA 137 (138)
T ss_pred hccCceeEecccccccceEEEeeCCCCCEEEeecC-CCc-c-eEEEEECCCCcEEEee
Confidence 346789999998 66677777778887654333 222 2 2799999999999986
No 174
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.94 E-value=6.1e-09 Score=86.76 Aligned_cols=96 Identities=17% Similarity=0.233 Sum_probs=69.7
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCC-----cceeeEeeecCCCceeEEEeeecCCC--C--------CCC
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEE-----KYTNAFLGYGPEDSHFVIELTYNYGV--D--------KYD 65 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~--~--------~~~ 65 (262)
|+||++.|++++.+..||+++|||+..+....++. ......+..++ ....+++..+... . ...
T Consensus 181 IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~--g~v~ipLnEP~~~~~~~SqI~eFL~~~ 258 (398)
T PLN02875 181 LDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNN--EMVLLPLNEPTFGTKRKSQIQTYLEHN 258 (398)
T ss_pred eCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCC--CcEEEEeccCCCCCCCcChHHHHHHhc
Confidence 68999999999999999999999998876543221 12344444333 2345666654221 1 122
Q ss_pred CCCCceeEEEEeCCHHHHHHHHHHc----CCeeecCC
Q 024790 66 IGTGFGHFGIAVDDVAKTVELIKAK----GGKVTREP 98 (262)
Q Consensus 66 ~~~~~~~i~~~v~d~~~~~~~l~~~----G~~~~~~~ 98 (262)
.|.|++||||.|+|+.++.++|+++ |++.+..|
T Consensus 259 ~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 259 EGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred CCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 5689999999999999999999999 99887644
No 175
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.83 E-value=1e-08 Score=80.34 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=94.8
Q ss_pred CCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcc-------cccCCcee
Q 024790 129 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD-------YDKGNAYA 201 (262)
Q Consensus 129 ~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~ 201 (262)
.+++||.+.|.|...+++||+..|||+.........+...+.......+ .....+...+.+.. ..+|.++.
T Consensus 16 l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g--~~vFv~~s~~~p~~~~~G~~l~~Hgdgvk 93 (381)
T KOG0638|consen 16 LRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQG--KIVFVFNSAYNPDNSEYGDHLVKHGDGVK 93 (381)
T ss_pred eeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcC--CEEEEEecCCCCCchhhhhhhhhcccchh
Confidence 3799999999999999999999999999876554444344344443321 23333333222221 34567899
Q ss_pred EEEEEecCHHHHHHHHHHhCCeeecCCccCCC--CcceEEEEeCCCCcEEEEEeccccccc
Q 024790 202 QIAIGTDDVYKTAEAIKLFGGKVTREPGPLPG--INTKITACLDPDGWKTVFVDNVDFLKE 260 (262)
Q Consensus 202 ~i~~~v~dl~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~DP~G~~ie~~~~~~~~~~ 260 (262)
-+||+|+|++++.+.+.++|.++..+|..... |..+++.++.+.-....+++++.+.++
T Consensus 94 dvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~ 154 (381)
T KOG0638|consen 94 DVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGP 154 (381)
T ss_pred ceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhcccccc
Confidence 99999999999999999999999999876654 344778888888777788887776553
No 176
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.80 E-value=4e-08 Score=79.27 Aligned_cols=104 Identities=22% Similarity=0.350 Sum_probs=71.5
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEec-
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD- 208 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~- 208 (262)
...||+|.|+|++++++||+++|++.. . ..+. ..++ + +....+-+... ......-..++|.++
T Consensus 247 ~~IfVNLpV~DL~rS~~FYt~LF~~n~-F--sde~---a~cm-~----dtI~vMllt~~-----D~~~~~evLl~Ls~~S 310 (357)
T PRK01037 247 KTFSVVLEVQDLRRAKKFYSKMFGLEC-W--DGDK---LFLL-G----KTSLYLQQTKA-----EKKNRGTTTLSLELEC 310 (357)
T ss_pred ceEEEEeeeCCHHHHHHHHHHHhCCCC-C--CCCc---cccc-c----CcEEEEEecCC-----CCCCcceEEEEeccCC
Confidence 567999999999999999999988874 2 1111 1122 1 22222222221 122345567888875
Q ss_pred --CHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEe
Q 024790 209 --DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 253 (262)
Q Consensus 209 --dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 253 (262)
++++++++..++|++...+|.++.. .--|.|||||.||++=
T Consensus 311 re~VD~lv~~A~aaGG~~~~~~~D~Gf----~rsf~D~DGH~WEi~~ 353 (357)
T PRK01037 311 EHDFVRFLRRWEMLGGELGEQADGHFP----LRLVFDLDGHIWVVSC 353 (357)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcccccC----cceeECCCCCEEEEEE
Confidence 6899999999999988766666555 3458999999999974
No 177
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.79 E-value=5.7e-08 Score=78.39 Aligned_cols=103 Identities=20% Similarity=0.275 Sum_probs=66.2
Q ss_pred ceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCC--
Q 024790 2 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD-- 79 (262)
Q Consensus 2 ~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d-- 79 (262)
-||+|.|+|+++|++||+++|++.. .+.+ . .+.+ ++ .....+.... ... ...-.-+|+.+++
T Consensus 249 IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde----~--a~cm--~d---tI~vMllt~~--D~~--~~~evLl~Ls~~Sre 312 (357)
T PRK01037 249 FSVVLEVQDLRRAKKFYSKMFGLEC-WDGD----K--LFLL--GK---TSLYLQQTKA--EKK--NRGTTTLSLELECEH 312 (357)
T ss_pred EEEEeeeCCHHHHHHHHHHHhCCCC-CCCC----c--cccc--cC---cEEEEEecCC--CCC--CcceEEEEeccCCHH
Confidence 3899999999999999999988875 3222 1 1222 22 1122222111 111 1222348888885
Q ss_pred -HHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEc
Q 024790 80 -VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 80 -~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 124 (262)
++++.++..++|.+...++.+. |. .--|.|||||.||++-.
T Consensus 313 ~VD~lv~~A~aaGG~~~~~~~D~--Gf--~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 313 DFVRFLRRWEMLGGELGEQADGH--FP--LRLVFDLDGHIWVVSCV 354 (357)
T ss_pred HHHHHHHHHHHcCCCCCCCcccc--cC--cceeECCCCCEEEEEEE
Confidence 7889999999999765554443 33 33369999999999853
No 178
>PRK10148 hypothetical protein; Provisional
Probab=98.67 E-value=3.6e-06 Score=61.16 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=76.0
Q ss_pred EEEeC-CHHHHHHHHHhhcCcEEEEEec---C-----------------CCCcceeeEeeecCCCceeEEEeeecCCCCC
Q 024790 5 VYRVG-DLDRTIKFYTECLGMKLLRKRD---I-----------------PEEKYTNAFLGYGPEDSHFVIELTYNYGVDK 63 (262)
Q Consensus 5 ~l~v~-d~~~a~~fY~~~lG~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 63 (262)
-|..+ |.++|.+||+++||.++..... . ..+...++.+.+++. .+.+..... ..
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~----~lm~sD~~~-~~ 80 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGS----DIMMSDAIP-SG 80 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCE----EEEEECCCC-Cc
Confidence 45664 8999999999999988765421 0 123455666766542 223322111 11
Q ss_pred CCCCCCceeEEEEeCCHHH---HHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCCCC
Q 024790 64 YDIGTGFGHFGIAVDDVAK---TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTP 128 (262)
Q Consensus 64 ~~~~~~~~~i~~~v~d~~~---~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~~~ 128 (262)
...+ .-.++++.++|.++ +.++| +.|.++..++.+..+ +.+...+.||.|+.|.|......|
T Consensus 81 ~~~~-~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~w-g~~~g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 81 KAHY-SGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFW-AHGFGKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred CCCC-CeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcch-hhccEEEECCCCCEEEEEecCCCC
Confidence 1112 23457888888776 44554 689999989888877 556678999999999998765544
No 179
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.54 E-value=2.3e-07 Score=74.33 Aligned_cols=100 Identities=21% Similarity=0.278 Sum_probs=70.5
Q ss_pred CceEEEEe--CCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCC-------CCCCCCce
Q 024790 1 MLHVVYRV--GDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK-------YDIGTGFG 71 (262)
Q Consensus 1 l~hv~l~v--~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~ 71 (262)
|+|++..| ..++.+..||+++|+|+.....+.++......--.+-.....+.+.+..+..... ...|.|++
T Consensus 168 IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~G~GIQ 247 (363)
T COG3185 168 IDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYRGEGIQ 247 (363)
T ss_pred echhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhCCCcce
Confidence 57888877 5899999999999999998887765542222111111223335555554322211 22678999
Q ss_pred eEEEEeCCHHHHHHHHHHcCCeeecCCcc
Q 024790 72 HFGIAVDDVAKTVELIKAKGGKVTREPGP 100 (262)
Q Consensus 72 ~i~~~v~d~~~~~~~l~~~G~~~~~~~~~ 100 (262)
||+|.++|+-++.++++++|++.+..|..
T Consensus 248 HIA~~T~dI~~tv~~lr~rG~~fl~ip~t 276 (363)
T COG3185 248 HIAFGTDDIYATVAALRERGVKFLPIPET 276 (363)
T ss_pred EEEecccHHHHHHHHHHHcCCccCCCchh
Confidence 99999999999999999999999866553
No 180
>PRK10148 hypothetical protein; Provisional
Probab=98.49 E-value=1e-05 Score=58.84 Aligned_cols=115 Identities=16% Similarity=0.089 Sum_probs=72.8
Q ss_pred EEeeec-ChhhhHHHHHHhcCCeeeeeccC---c-----------------CccceeeeeccCCCCcceEEEEeeecCCc
Q 024790 134 VMLRVG-DLDRSINFYEQAFGMELLRKRDN---P-----------------EYKYTIAMMGYGPEDKNVVLELTYNYGVT 192 (262)
Q Consensus 134 v~l~v~-d~~~~~~FY~~~lG~~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (262)
..|... |.+++.+||+++||.++...... + ++....+.+..+ ...+-+....+.
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~----g~~lm~sD~~~~- 79 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIA----GSDIMMSDAIPS- 79 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEEC----CEEEEEECCCCC-
Confidence 345664 89999999999999887654321 1 111112222221 123333221111
Q ss_pred ccccCCceeEEEEEecCHHH---HHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccc
Q 024790 193 DYDKGNAYAQIAIGTDDVYK---TAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 193 ~~~~~~~~~~i~~~v~dl~~---~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 256 (262)
........++.+.++|.++ +.++| +.|+++..++.+..++. ++..++||.|+.|.|...+.
T Consensus 80 -~~~~~~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~-~~g~v~D~fGi~W~l~~~~~ 143 (147)
T PRK10148 80 -GKAHYSGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAH-GFGKVTDKFGVPWMINVVKQ 143 (147)
T ss_pred -cCCCCCeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhh-ccEEEECCCCCEEEEEecCC
Confidence 1111135677777778766 55666 68999999998888865 78899999999999977543
No 181
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.47 E-value=6.7e-07 Score=63.57 Aligned_cols=118 Identities=21% Similarity=0.251 Sum_probs=74.5
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCCC--CCCCCCceeEEEEeC
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK--YDIGTGFGHFGIAVD 78 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~i~~~v~ 78 (262)
++||.+.+++.++...+++ .|||+.+.+-.. .....++-| ...+.+.-.+.+.... ..+|.++..|+|+|+
T Consensus 10 ~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrs----k~v~l~rQG--~I~~vln~ep~s~a~~~~~~HG~sv~aiafrV~ 82 (139)
T PF14696_consen 10 FDFVEFAVPDAQALAQLFT-ALGFQPVARHRS----KDVTLYRQG--DINFVLNSEPDSFAAEFAAQHGPSVCAIAFRVD 82 (139)
T ss_dssp EEEEEEE-SSTTSCHHHHC-CCCEEEECCECC----CSEEEEEET--TEEEEEEEESTSCHHHHHHHHSSEEEEEEEEES
T ss_pred eEEEEEecCCHHHHHHHHH-HhCcceEEecCC----cceEEEEeC--CEEEEEeCCCcchHHHHHHhcCCEEEEEEEEeC
Confidence 4789999999888888886 599999876421 123333333 3444443322111111 126889999999999
Q ss_pred CHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCCC
Q 024790 79 DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 127 (262)
Q Consensus 79 d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~~ 127 (262)
|.++++++..++|++...++... +.....-+..++|.++-|++....
T Consensus 83 Da~~A~~rA~~~GA~~~~~~~~~--~e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 83 DAAAAYERAVALGAEPVQEPTGP--GELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp -HHHHHHHHHHTT--EEEEEEET--T-BEEEEEE-CCC-EEEEEE--SS
T ss_pred CHHHHHHHHHHcCCcCcccCCCC--CcEeeeeEEccCCCEEEEEecCCC
Confidence 99999999999999887665322 345667788999999999987544
No 182
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.46 E-value=8.3e-06 Score=55.21 Aligned_cols=112 Identities=24% Similarity=0.349 Sum_probs=60.6
Q ss_pred eEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcc-cccC-CceeEEEEEecCH
Q 024790 133 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD-YDKG-NAYAQIAIGTDDV 210 (262)
Q Consensus 133 ~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-~~~~~i~~~v~dl 210 (262)
+-+|.|.|-+...+||+++|||++..... .+++++.. .....+.|-+.+.... .-.| .-+.++-+.|.+.
T Consensus 3 ~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~--~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~ 74 (125)
T PF14506_consen 3 IPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQ--QKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNP 74 (125)
T ss_dssp EEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-T--T--EEEEEEE--TTT-B--SSS-SEEEEEEEESSH
T ss_pred CceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCC--CCceEEEEecCCccccccccCcceeeEEEEEcCCH
Confidence 45789999999999999999999986532 44555543 2344444444333221 2233 4788999999874
Q ss_pred HHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccc
Q 024790 211 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 211 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 256 (262)
. .++.|.++|.++...- .+-.++.+-..+|+|.+|.+....+
T Consensus 75 ~-EIe~LLar~~~~~~l~---kg~~gyAfe~vSPEgd~~llhaEdd 116 (125)
T PF14506_consen 75 K-EIEALLARGAQYDRLY---KGKNGYAFEAVSPEGDRFLLHAEDD 116 (125)
T ss_dssp H-HHHHHHHC-S--SEEE---E-SSSEEEEEE-TT--EEEEE--S-
T ss_pred H-HHHHHHhcccccceeE---EcCCceEEEEECCCCCEEEEEEcCC
Confidence 3 3455556665543211 1212466668899999999998766
No 183
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.43 E-value=6.2e-06 Score=58.66 Aligned_cols=118 Identities=18% Similarity=0.195 Sum_probs=79.9
Q ss_pred CCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcc----cccCCceeEEE
Q 024790 129 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD----YDKGNAYAQIA 204 (262)
Q Consensus 129 ~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~i~ 204 (262)
.++++|.+.+++..++..+++ .|||+...+....+ ...+ . .+...+.|...+.... ..+|+++--++
T Consensus 8 ~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk~---v~l~-r----QG~I~~vln~ep~s~a~~~~~~HG~sv~aia 78 (139)
T PF14696_consen 8 DGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSKD---VTLY-R----QGDINFVLNSEPDSFAAEFAAQHGPSVCAIA 78 (139)
T ss_dssp EEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCCS---EEEE-E----ETTEEEEEEEESTSCHHHHHHHHSSEEEEEE
T ss_pred CCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCcc---eEEE-E----eCCEEEEEeCCCcchHHHHHHhcCCEEEEEE
Confidence 468899999999888888885 69999987764332 1222 2 1345666655432211 33689999999
Q ss_pred EEecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEecccc
Q 024790 205 IGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 257 (262)
Q Consensus 205 ~~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~~ 257 (262)
|.|+|..+++++..+.|.+....|.... ...+.-++-+.|.++.|+++...
T Consensus 79 frV~Da~~A~~rA~~~GA~~~~~~~~~~--e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 79 FRVDDAAAAYERAVALGAEPVQEPTGPG--ELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp EEES-HHHHHHHHHHTT--EEEEEEETT---BEEEEEE-CCC-EEEEEE--SS
T ss_pred EEeCCHHHHHHHHHHcCCcCcccCCCCC--cEeeeeEEccCCCEEEEEecCCC
Confidence 9999999999999999999887763222 24677899999999999998654
No 184
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.19 E-value=7.3e-06 Score=61.61 Aligned_cols=89 Identities=24% Similarity=0.341 Sum_probs=52.2
Q ss_pred ceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCccc------------ccCC
Q 024790 131 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDY------------DKGN 198 (262)
Q Consensus 131 ~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~~ 198 (262)
|+|+.+.|+|++++.++|++.|||++.....-+..+..-..+.++. . .|||....+..+. ..+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~---~-YlEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGD---G-YLELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SS---S-EEEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCC---c-eEEEEEeCCcccccccccceechhhcCCC
Confidence 6899999999999999998899999987765554333334444432 3 6777763222111 1357
Q ss_pred ceeEEEEEecCHHHHHHHHHHhCCe
Q 024790 199 AYAQIAIGTDDVYKTAEAIKLFGGK 223 (262)
Q Consensus 199 ~~~~i~~~v~dl~~~~~~l~~~g~~ 223 (262)
|...++|.++|+++..++|+++|++
T Consensus 77 g~~~~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHHHTTT-E
T ss_pred CeEEEEEecCCHHHHHHHHHhcCCC
Confidence 9999999999999999999999986
No 185
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=97.63 E-value=0.00026 Score=46.97 Aligned_cols=90 Identities=18% Similarity=0.214 Sum_probs=43.7
Q ss_pred ceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEeeecCCcc---cccCCceeEEEEEe
Q 024790 131 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD---YDKGNAYAQIAIGT 207 (262)
Q Consensus 131 ~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~i~~~v 207 (262)
+..+.|+|+| ++++.||+++||-... .. +.+.+..++.- ....=++-.+-|.|
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~~---------~~--------------l~f~ea~G~DL~~~~~~twDLe~Lkf~V 61 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQLP---------FF--------------LTFQEAQGPDLTIENNETWDLEMLKFQV 61 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHHT---------TT--------------EEEEE---CCGSS-TTSBSSEEEEEEEE
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCCC---------ce--------------EEEeeccCCccccCCCcEEeeEEEEEEe
Confidence 5679999999 8899999998863221 11 11121111110 11122666777777
Q ss_pred c---CHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEE
Q 024790 208 D---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 252 (262)
Q Consensus 208 ~---dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~ 252 (262)
+ |+.++.+++++. .+..++. .+++.+.||+|..|+|.
T Consensus 62 ~~~~Dl~~L~~~le~~--~~fidKk------~k~l~~~Dps~IElWFe 101 (101)
T PF14507_consen 62 PKDFDLAALKSHLEEQ--EFFIDKK------EKFLVTSDPSQIELWFE 101 (101)
T ss_dssp S-S--HHHHHHHTTTS---EE--TT-------SEEEEE-TTS-EEEEE
T ss_pred cCcccHHHHHHHhccc--ceEecCC------ceEEEEECCcceEEEeC
Confidence 7 788899999984 3333332 47899999999999873
No 186
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.98 E-value=0.056 Score=37.50 Aligned_cols=96 Identities=19% Similarity=0.355 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHhhcCc-EEEEEecCCC------CcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCCH-
Q 024790 9 GDLDRTIKFYTECLGM-KLLRKRDIPE------EKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDV- 80 (262)
Q Consensus 9 ~d~~~a~~fY~~~lG~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d~- 80 (262)
.+.++|.+||+++||- ++......++ +...++.+.+++. .+...... +....+++ ..+++.++|.
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~----~lm~~D~~--~~~~~~~~-~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQ----KLMASDGG--PDFPFGNN-ISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTE----EEEEEEES--TS----TT-EEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCe----EEEEECCC--CCCCCCCc-EEEEEEcCCHH
Confidence 6899999999999984 3333222221 2334555555432 22222222 22233334 3588888875
Q ss_pred --HHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEE
Q 024790 81 --AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 122 (262)
Q Consensus 81 --~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~ 122 (262)
+++.++|.+.|- +.. ....+.|..|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~----------~~~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ----------WFS-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE----------TCC-EEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC----------ccc-eeEEEEeCCCCEEEeC
Confidence 455677777663 223 6677899999999875
No 187
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.26 E-value=0.06 Score=37.36 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=50.2
Q ss_pred cChhhhHHHHHHhcCCee-eeeccCcCc------cceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecC--
Q 024790 139 GDLDRSINFYEQAFGMEL-LRKRDNPEY------KYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD-- 209 (262)
Q Consensus 139 ~d~~~~~~FY~~~lG~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~d-- 209 (262)
.+.++|.+||.++||-.. ......++. ....+.+... +..+-..... .....+ ....+++.++|
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~----g~~lm~~D~~--~~~~~~-~~~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIG----GQKLMASDGG--PDFPFG-NNISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEET----TEEEEEEEES--TS-----TTEEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEEC----CeEEEEECCC--CCCCCC-CcEEEEEEcCCHH
Confidence 589999999999999432 222222211 1112222221 2223222222 112223 33667777765
Q ss_pred -HHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEE
Q 024790 210 -VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 252 (262)
Q Consensus 210 -l~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~ 252 (262)
++++.++|.+-|. +. ..+..++|..|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~----------~~-~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ----------WF-SRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE----------TC-CEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC----------cc-ceeEEEEeCCCCEEEeC
Confidence 5566778887765 22 27788999999999885
No 188
>PF15067 FAM124: FAM124 family
Probab=96.06 E-value=0.12 Score=39.76 Aligned_cols=125 Identities=13% Similarity=0.126 Sum_probs=75.2
Q ss_pred EEEECCCCCEEEEEEcCCCCCCceeEEeeec--ChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCcceEEEEe
Q 024790 109 AFIEDPDGYKFELLERGPTPEPLCQVMLRVG--DLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELT 186 (262)
Q Consensus 109 ~~~~DP~G~~iel~~~~~~~~~~~~v~l~v~--d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (262)
+|-.+|.--.|.+.+-- --..+-.++|.|+ |++.+++||+-+|+-+...... ++....+-.. ....+.+.
T Consensus 108 fysl~~~~PlWavr~VH-~G~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~----~FC~F~lys~---~~~~iQls 179 (236)
T PF15067_consen 108 FYSLDPGMPLWAVRQVH-YGKEILRFTLYCSFDNYEDMVRFYELILQREPTQQKE----DFCFFTLYSQ---PGLDIQLS 179 (236)
T ss_pred ceecCCCCceeEEeeee-ccccEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC----CcEEEEEecC---CCeEEEEE
Confidence 44456655666555321 2246677999998 9999999999999988754422 2443333322 34555555
Q ss_pred eecC-CcccccCCceeEEEEEecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEE
Q 024790 187 YNYG-VTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 251 (262)
Q Consensus 187 ~~~~-~~~~~~~~~~~~i~~~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~ 251 (262)
-+.- ....+......-+.|.|.|+.+++.-|-.--. |.+.++ .-..|||||.|-|
T Consensus 180 LK~lp~~~~p~p~esavLqF~V~~igqLvpLLPnpc~---------PIS~~r-WqT~D~DGNkILL 235 (236)
T PF15067_consen 180 LKQLPPGMSPEPTESAVLQFRVEDIGQLVPLLPNPCS---------PISETR-WQTEDYDGNKILL 235 (236)
T ss_pred eccCCCCCCcccccceEEEEEecchhhhcccCCCCcc---------cccCCc-ceeeCCCCCEecc
Confidence 4321 11112223456788999999988765532221 222222 5579999999854
No 189
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=95.92 E-value=0.032 Score=37.16 Aligned_cols=90 Identities=13% Similarity=0.172 Sum_probs=41.3
Q ss_pred ceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCCCceeEEEeeecCCCC-CCCCCCCceeEEEEeC--
Q 024790 2 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD-KYDIGTGFGHFGIAVD-- 78 (262)
Q Consensus 2 ~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~i~~~v~-- 78 (262)
..|.|+|+| +++++||+++||-.+. ....+ .-.++.... +....-++..+-|.|+
T Consensus 7 e~i~LNV~d-~~~~~fy~~~f~~~~~---------~~l~f------------~ea~G~DL~~~~~~twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 7 ESIELNVPD-AKSQSFYQSIFGGQLP---------FFLTF------------QEAQGPDLTIENNETWDLEMLKFQVPKD 64 (101)
T ss_dssp -EEEEEE-T--T---S--H---HHHT---------TTEEE------------EE---CCGSS-TTSBSSEEEEEEEES-S
T ss_pred EEEEEeCCC-hhHHHHHHhccccCCC---------ceEEE------------eeccCCccccCCCcEEeeEEEEEEecCc
Confidence 468899999 8899999998862210 00111 111111111 1123346777889998
Q ss_pred -CHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEE
Q 024790 79 -DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 121 (262)
Q Consensus 79 -d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel 121 (262)
|+.++.+++.+.++-+ + ...+.+.+.||.+..|-+
T Consensus 65 ~Dl~~L~~~le~~~~fi-------d-Kk~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 65 FDLAALKSHLEEQEFFI-------D-KKEKFLVTSDPSQIELWF 100 (101)
T ss_dssp --HHHHHHHTTTS-EE----------TT-SEEEEE-TTS-EEEE
T ss_pred ccHHHHHHHhcccceEe-------c-CCceEEEEECCcceEEEe
Confidence 5888888888854322 1 245667788999987654
No 190
>PF15067 FAM124: FAM124 family
Probab=95.71 E-value=0.14 Score=39.48 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=55.6
Q ss_pred eEEEEeC--CHHHHHHHHHhhcCcEEEEEecCCCCcceeeEe-eecCCCceeEEEeeec-CCCCCCCCCCCceeEEEEeC
Q 024790 3 HVVYRVG--DLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFL-GYGPEDSHFVIELTYN-YGVDKYDIGTGFGHFGIAVD 78 (262)
Q Consensus 3 hv~l~v~--d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~i~~~v~ 78 (262)
-++|.|+ |.+.+.+||+-+|+-++..... +..++ -..+....+++-+-.- .+..+.+. --.-+.|.|.
T Consensus 131 Rftly~~~~N~~d~vr~Yelil~~~~~~~k~------~FC~F~lys~~~~~iQlsLK~lp~~~~p~p~--esavLqF~V~ 202 (236)
T PF15067_consen 131 RFTLYCSFDNYEDMVRFYELILQREPTQQKE------DFCFFTLYSQPGLDIQLSLKQLPPGMSPEPT--ESAVLQFRVE 202 (236)
T ss_pred EEEEEecCCCHHHHHHHHHHHhccCcceeeC------CcEEEEEecCCCeEEEEEeccCCCCCCcccc--cceEEEEEec
Confidence 3678888 9999999999999988765432 12232 2233333333333221 11111111 1123889999
Q ss_pred CHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEE
Q 024790 79 DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 121 (262)
Q Consensus 79 d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel 121 (262)
|+.++..-| -+.+.. .. ..+ -...|||||.|-+
T Consensus 203 ~igqLvpLL-Pnpc~P------IS--~~r-WqT~D~DGNkILL 235 (236)
T PF15067_consen 203 DIGQLVPLL-PNPCSP------IS--ETR-WQTEDYDGNKILL 235 (236)
T ss_pred chhhhcccC-CCCccc------cc--CCc-ceeeCCCCCEecc
Confidence 987765543 222211 11 122 2258999999843
No 191
>PRK11700 hypothetical protein; Provisional
Probab=91.39 E-value=2.2 Score=32.00 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=43.8
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCc-EEEEEecCCCCcceeeEeeecCC-----CceeEEEeeecCCCCCCCCCCCceeEE
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGM-KLLRKRDIPEEKYTNAFLGYGPE-----DSHFVIELTYNYGVDKYDIGTGFGHFG 74 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~i~ 74 (262)
++||+++|++.+.|.+|-+..+-. ++......+ +.....+.+... ..-..+||..++ .+.....|+-||-
T Consensus 40 ~DHialR~n~~~tAe~w~~~l~~~G~llSen~IN--GRPI~l~~L~qPl~~~~w~I~cvELP~P~--~k~Yp~eGWEHIE 115 (187)
T PRK11700 40 ADHIALRCNQNETAERWRQGFLQCGELLSENIIN--GRPICLFELDQPLQVGHWSIDCVELPYPG--EKRYPHEGWEHIE 115 (187)
T ss_pred CcEEEEeeCCHHHHHHHHHHHHHhchhhhccccC--CeeEEEEEcCCCceeCCcEEEEEEeCCCC--CCCCCCCCceEEE
Confidence 589999999999999999887644 222221111 112333333221 011235554432 3444567999999
Q ss_pred EEeCC
Q 024790 75 IAVDD 79 (262)
Q Consensus 75 ~~v~d 79 (262)
+.++.
T Consensus 116 lVlp~ 120 (187)
T PRK11700 116 LVLPG 120 (187)
T ss_pred EEecC
Confidence 99984
No 192
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=88.62 E-value=5.3 Score=28.75 Aligned_cols=75 Identities=21% Similarity=0.282 Sum_probs=43.7
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcE-EEEEecCCCCcceeeEeeecCC-----CceeEEEeeecCCCCCCCCCCCceeEE
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMK-LLRKRDIPEEKYTNAFLGYGPE-----DSHFVIELTYNYGVDKYDIGTGFGHFG 74 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~i~ 74 (262)
++||+++|++.+.+.+|-+..+-.- +...... .| .-...+.+... ..-..+||..++ .+.....|+-||-
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~I-NG-RPI~l~~L~qPl~~~~~~I~cvELP~P~--~k~Yp~eGWEHIE 77 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEI-NG-RPIALIKLEKPLQFAGWSISIVELPFPK--DKKYPQEGWEHIE 77 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhcccc-CC-eeEEEEEcCCCceeCCcEEEEEEeCCCC--CCCCCCCCceEEE
Confidence 5899999999999999998877542 2222111 11 12333333221 011234554432 2444567999999
Q ss_pred EEeCC
Q 024790 75 IAVDD 79 (262)
Q Consensus 75 ~~v~d 79 (262)
+.++.
T Consensus 78 ~Vlp~ 82 (149)
T cd07268 78 IVIPS 82 (149)
T ss_pred EEecC
Confidence 99884
No 193
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=86.72 E-value=6.8 Score=29.48 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=42.3
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCc-EEEEEecCCCCcceeeEee------ecCCCceeEEEeeecCCCCCCCCCCCceeE
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGM-KLLRKRDIPEEKYTNAFLG------YGPEDSHFVIELTYNYGVDKYDIGTGFGHF 73 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i 73 (262)
++||+++|++.+.+.+|-+..+-. ++......+ |+ ....+. +++.. -..+||..+.. +.....|+-||
T Consensus 35 ~DHialRvn~~~~A~~~~~~l~~~G~llSen~IN-GR-PI~l~~L~qPL~~~~~~-I~~vELP~P~~--K~Yp~eGWEHI 109 (185)
T PF06185_consen 35 IDHIALRVNSNETAERWKQALLQCGELLSENMIN-GR-PICLFKLNQPLQFGGWS-IDCVELPYPKD--KRYPQEGWEHI 109 (185)
T ss_dssp EEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEET-TE-EEEEEEEEEEEEETTEE-EEEEEEE---S--S--SS-EEEEE
T ss_pred CcEEEEecCCHHHHHHHHHHHHHhChhhhhceeC-Ce-eEEEEEcCCchhcCCee-EEEEEeCCCCC--CCCCCCCceEE
Confidence 489999999999999999998865 333332222 11 222222 22211 12355554432 44456799999
Q ss_pred EEEeCC-HHHHHHHHH
Q 024790 74 GIAVDD-VAKTVELIK 88 (262)
Q Consensus 74 ~~~v~d-~~~~~~~l~ 88 (262)
-|.++. .+...+++.
T Consensus 110 E~Vip~~~~~~~~~~~ 125 (185)
T PF06185_consen 110 EFVIPSDAQTLLEQAL 125 (185)
T ss_dssp EEE--S-GGGHHHHHH
T ss_pred EEEecCCHHHHHHHHH
Confidence 999984 444444443
No 194
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=83.32 E-value=3.9 Score=26.26 Aligned_cols=46 Identities=15% Similarity=0.050 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccc
Q 024790 209 DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 209 dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 256 (262)
..+++.+++++.|.++..-..+..+ .+-+...|.+|+.+++.=++.
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g--~yev~~~~~dG~~~ev~vD~~ 75 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDG--CYEVEARDKDGKKVEVYVDPA 75 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCC--EEEEEEEECCCCEEEEEEcCC
Confidence 7899999999999977654332222 466889999999999976554
No 195
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=82.06 E-value=5.9 Score=25.42 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEc
Q 024790 79 DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 124 (262)
Q Consensus 79 d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 124 (262)
+.+++.+.+.+.|+.+.. .+...++.+.+...|.+|..+++.-.
T Consensus 30 ~~~~~~~~l~~~G~~v~~--ve~~~~g~yev~~~~~dG~~~ev~vD 73 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVRE--VEFDDDGCYEVEARDKDGKKVEVYVD 73 (83)
T ss_pred CHHHHHHHHHhcCCceEE--EEEcCCCEEEEEEEECCCCEEEEEEc
Confidence 678999999999996643 24423356778889999999999854
No 196
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=79.00 E-value=12 Score=25.83 Aligned_cols=113 Identities=16% Similarity=0.211 Sum_probs=63.9
Q ss_pred HHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEEcCCCCCCceeEEeeecChhhhHHHHHHhcCCeeeee
Q 024790 80 VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRK 159 (262)
Q Consensus 80 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~~~~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~ 159 (262)
+.++...|.++|+.+ +.+.+.| .+.++-+.+.|.+.+.+.+-..+ -||.+...
T Consensus 17 L~~~~~~L~eagINi------------RA~tiAd--------------t~dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~ 69 (142)
T COG4747 17 LASVANKLKEAGINI------------RAFTIAD--------------TGDFGIIRMVVDRPDEAHSVLEE-AGFTVRET 69 (142)
T ss_pred HHHHHHHHHHcCCce------------EEEEecc--------------ccCcceEEEEcCChHHHHHHHHH-CCcEEEee
Confidence 677788888888654 1222222 24456678889999999988877 78877543
Q ss_pred c------cCcCccceeeeeccCCCCcceEEEEeeecCCcccccCCceeEEEEEecCHHHHHHHHHHhCCeeec
Q 024790 160 R------DNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTR 226 (262)
Q Consensus 160 ~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~dl~~~~~~l~~~g~~~~~ 226 (262)
. +..+++.+...--.+ +...-++..+... ....-..+-++|+|++++.+.|+++|+.+..
T Consensus 70 dVlaVEmeD~PG~l~~I~~vl~--d~diNldYiYAFv-----~ek~KAlli~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 70 DVLAVEMEDVPGGLSRIAEVLG--DADINLDYIYAFV-----TEKQKALLIVRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred eEEEEEecCCCCcHHHHHHHHh--hcCcCceeeeeee-----ecCceEEEEEEhhHHHHHHHHHHHcCCeecC
Confidence 1 111221111000000 0111122221110 1112235667899999999999999999873
No 197
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.00 E-value=26 Score=25.15 Aligned_cols=34 Identities=18% Similarity=0.070 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEe
Q 024790 209 DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 253 (262)
Q Consensus 209 dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 253 (262)
++|++...|...|.+- .....++|-.|..|.|.=
T Consensus 90 E~Drlwnal~~~g~e~-----------~~cgW~kDKfGVSWQi~p 123 (151)
T COG3865 90 EIDRLWNALSDNGGEA-----------EACGWLKDKFGVSWQIVP 123 (151)
T ss_pred HHHHHHHHHhccCcch-----------hcceeEecccCcEEEEcH
Confidence 5788888998888732 245679999999999864
No 198
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.04 E-value=8.5 Score=22.83 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.8
Q ss_pred CceeEEEEEecCHHHHHHHHHHhCCeee
Q 024790 198 NAYAQIAIGTDDVYKTAEAIKLFGGKVT 225 (262)
Q Consensus 198 ~~~~~i~~~v~dl~~~~~~l~~~g~~~~ 225 (262)
.+...+.|.+++.+++.+.|+++|++++
T Consensus 38 ~~~~~v~~~ve~~~~~~~~L~~~G~~v~ 65 (65)
T cd04882 38 GGKALLIFRTEDIEKAIEVLQERGVELV 65 (65)
T ss_pred CCeEEEEEEeCCHHHHHHHHHHCCceEC
Confidence 3567788999999999999999998763
No 199
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=70.00 E-value=45 Score=25.19 Aligned_cols=78 Identities=9% Similarity=0.051 Sum_probs=37.6
Q ss_pred CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccC--CCCcceEEEEeee-cCCcccccCCceeEEEEE
Q 024790 130 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYG--PEDKNVVLELTYN-YGVTDYDKGNAYAQIAIG 206 (262)
Q Consensus 130 ~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~-~~~~~~~~~~~~~~i~~~ 206 (262)
.++|++++|.+.+.+.+|-+..+-.-..-+...-+|+. ++.+... -.-++-.+...+- ++.....+-.|.-||.|.
T Consensus 34 ~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRP-I~l~~L~qPL~~~~~~I~~vELP~P~~K~Yp~eGWEHIE~V 112 (185)
T PF06185_consen 34 EIDHIALRVNSNETAERWKQALLQCGELLSENMINGRP-ICLFKLNQPLQFGGWSIDCVELPYPKDKRYPQEGWEHIEFV 112 (185)
T ss_dssp EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEE-EEEEEEEEEEEETTEEEEEEEEE---SS--SS-EEEEEEEE
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCee-EEEEEcCCchhcCCeeEEEEEeCCCCCCCCCCCCceEEEEE
Confidence 57999999999999999999877664433322122221 1111111 0011223333331 122223345699999998
Q ss_pred ec
Q 024790 207 TD 208 (262)
Q Consensus 207 v~ 208 (262)
+.
T Consensus 113 ip 114 (185)
T PF06185_consen 113 IP 114 (185)
T ss_dssp --
T ss_pred ec
Confidence 75
No 200
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=69.62 E-value=44 Score=24.91 Aligned_cols=80 Identities=15% Similarity=0.279 Sum_probs=48.9
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCC------EEEEEEcC---------C-CCCC---cee
Q 024790 73 FGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGY------KFELLERG---------P-TPEP---LCQ 133 (262)
Q Consensus 73 i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~------~iel~~~~---------~-~~~~---~~~ 133 (262)
+=+.+.|++++.++|.+.|+...... ...-.||..|++. .+.+-+.. + .... -..
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~~~~------~q~D~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E 79 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFIKKE------FQHDIYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKE 79 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCccccccc------ceEEEeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEE
Confidence 45677899999999999997654221 1223455555431 12222221 1 1111 123
Q ss_pred EEeeecChhhhHHHHHHhcCCeeeee
Q 024790 134 VMLRVGDLDRSINFYEQAFGMELLRK 159 (262)
Q Consensus 134 v~l~v~d~~~~~~FY~~~lG~~~~~~ 159 (262)
+...|.|.+++.+.+. .||++....
T Consensus 80 ~e~~v~d~~~~~~iL~-~LG~~~~~~ 104 (174)
T TIGR00318 80 IEFKIEDIENALQILK-KLGFKKVYE 104 (174)
T ss_pred EEEEECCHHHHHHHHH-HCCCeEEEE
Confidence 6778899999999997 699997543
No 201
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.98 E-value=17 Score=22.06 Aligned_cols=29 Identities=10% Similarity=0.009 Sum_probs=21.7
Q ss_pred ceeEEEEEe--cCHHHHHHHHHHhCCeeecC
Q 024790 199 AYAQIAIGT--DDVYKTAEAIKLFGGKVTRE 227 (262)
Q Consensus 199 ~~~~i~~~v--~dl~~~~~~l~~~g~~~~~~ 227 (262)
+...+.|.+ +|.+++.+.|+++|+++.++
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 344455554 58889999999999998754
No 202
>PRK11700 hypothetical protein; Provisional
Probab=62.75 E-value=65 Score=24.37 Aligned_cols=79 Identities=8% Similarity=0.019 Sum_probs=41.5
Q ss_pred CCceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCC--CcceEEEEeee-cCCcccccCCceeEEEE
Q 024790 129 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPE--DKNVVLELTYN-YGVTDYDKGNAYAQIAI 205 (262)
Q Consensus 129 ~~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~-~~~~~~~~~~~~~~i~~ 205 (262)
-.++|++|+|.+.+.+.+|-+..+-.-..-+...-+|+ .++.+....+ -++-.+..++- ++.....+-.|.-||.+
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGR-PI~l~~L~qPl~~~~w~I~cvELP~P~~k~Yp~eGWEHIEl 116 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIINGR-PICLFELDQPLQVGHWSIDCVELPYPGEKRYPHEGWEHIEL 116 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCe-eEEEEEcCCCceeCCcEEEEEEeCCCCCCCCCCCCceEEEE
Confidence 46899999999999999998876643222211111221 2222222111 12223333321 22222334568999999
Q ss_pred Eec
Q 024790 206 GTD 208 (262)
Q Consensus 206 ~v~ 208 (262)
.+.
T Consensus 117 Vlp 119 (187)
T PRK11700 117 VLP 119 (187)
T ss_pred Eec
Confidence 875
No 203
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.09 E-value=64 Score=23.90 Aligned_cols=87 Identities=17% Similarity=0.147 Sum_probs=45.4
Q ss_pred CceEEEEeCCHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCC----Cce-eEEEeeecCCCCCCCCCCCceeEEE
Q 024790 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPE----DSH-FVIELTYNYGVDKYDIGTGFGHFGI 75 (262)
Q Consensus 1 l~hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~l~~~~~~~~~~~~~~~~~~~i~~ 75 (262)
++|++|+|++.+-+..|-...+-+-..-+...-. +.....+.+... ... -.+++..+ ..+.-.-.|+-||-+
T Consensus 40 ~DHIaLRvh~~qtAk~wr~~~lqcG~~lS~n~iN-GRpI~li~l~~Pl~v~~w~id~iELP~P--~~K~YP~egWEHIEi 116 (185)
T COG3102 40 ADHIALRVHQEQTAKRWRRGLLQCGELLSENLIN-GRPICLIKLHQPLQVAHWQIDIIELPYP--KNKRYPHEGWEHIEI 116 (185)
T ss_pred cceeEEEeCcHHHHHHHHHHHHHHHHHhhhhhcC-CceEEEEEcCCcceecceEEEEEEccCC--cCCCCCCcCceeEEE
Confidence 5899999999998888766544321111111101 112333333221 000 12444332 233345569999999
Q ss_pred EeC-CHHHHHHHHHHc
Q 024790 76 AVD-DVAKTVELIKAK 90 (262)
Q Consensus 76 ~v~-d~~~~~~~l~~~ 90 (262)
..+ +.+++..+..+.
T Consensus 117 VlP~~peel~~~~~~l 132 (185)
T COG3102 117 VLPGDPEELNARALAL 132 (185)
T ss_pred EcCCChHHHHHHHHhh
Confidence 998 566665555443
No 204
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=56.92 E-value=73 Score=23.10 Aligned_cols=77 Identities=12% Similarity=0.103 Sum_probs=40.6
Q ss_pred ceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCC--CcceEEEEeee-cCCcccccCCceeEEEEEe
Q 024790 131 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPE--DKNVVLELTYN-YGVTDYDKGNAYAQIAIGT 207 (262)
Q Consensus 131 ~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~-~~~~~~~~~~~~~~i~~~v 207 (262)
++|++|+|.+.+.+.+|-+..+-.-..-+...-+++ .++.+..... -.+-.+..++- ++.....+-.|.-||.+.+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGR-PI~l~~L~qPl~~~~~~I~cvELP~P~~k~Yp~eGWEHIE~Vl 80 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGR-PIALIKLEKPLQFAGWSISIVELPFPKDKKYPQEGWEHIEIVI 80 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCe-eEEEEEcCCCceeCCcEEEEEEeCCCCCCCCCCCCceEEEEEe
Confidence 689999999999999999876644322221111221 1222222111 12223333331 2222233446899999987
Q ss_pred c
Q 024790 208 D 208 (262)
Q Consensus 208 ~ 208 (262)
.
T Consensus 81 p 81 (149)
T cd07268 81 P 81 (149)
T ss_pred c
Confidence 5
No 205
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=53.35 E-value=37 Score=27.94 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=23.0
Q ss_pred CCCCceeEEEEe------CCHHHHHHHHHHcCCeee
Q 024790 66 IGTGFGHFGIAV------DDVAKTVELIKAKGGKVT 95 (262)
Q Consensus 66 ~~~~~~~i~~~v------~d~~~~~~~l~~~G~~~~ 95 (262)
.|..++|+...| .|++++.+.|+++|++..
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 457899999999 999999999999999876
No 206
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.08 E-value=54 Score=25.52 Aligned_cols=35 Identities=20% Similarity=0.446 Sum_probs=23.7
Q ss_pred CHHHHHHHHHhhcCcEEEEEecCCCCcceeeEeeecCC
Q 024790 10 DLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPE 47 (262)
Q Consensus 10 d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~ 47 (262)
|..++..||.+.||+++..-- +......|.++.+.
T Consensus 146 ~~~e~a~wy~dyLGleie~~h---gevikfiFTnIdpk 180 (246)
T KOG4657|consen 146 DIHEAASWYNDYLGLEIEAGH---GEVIKFIFTNIDPK 180 (246)
T ss_pred ccHHHHHHHHHhcCceeeecc---CceEEEEEeccCCC
Confidence 667789999999999986532 22334556666544
No 207
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=50.52 E-value=34 Score=20.12 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=23.1
Q ss_pred EecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccc
Q 024790 206 GTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 206 ~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 256 (262)
.+.++++.-.+-..+|-.+... .. ...+-..+|||..+-|++...
T Consensus 2 P~~~ls~~ea~~l~~Gr~l~~~-----~~-~g~~aa~~pdG~lvAL~~~~g 46 (56)
T PF09142_consen 2 PVRELSAEEARDLRHGRRLPAA-----GP-PGPVAAFAPDGRLVALLEERG 46 (56)
T ss_dssp EEEE--HHHHHHHHTT---B-----------S-EEEE-TTS-EEEEEEEET
T ss_pred CceECCHHHHHHHhCCCccCCC-----CC-CceEEEECCCCcEEEEEEccC
Confidence 3456667777777787776543 11 123558899999999997654
No 208
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=48.00 E-value=9 Score=21.27 Aligned_cols=24 Identities=21% Similarity=0.549 Sum_probs=18.8
Q ss_pred CCceeEEeeecChhhhHHHHHHhc
Q 024790 129 EPLCQVMLRVGDLDRSINFYEQAF 152 (262)
Q Consensus 129 ~~~~~v~l~v~d~~~~~~FY~~~l 152 (262)
+.++...+.+++.++...||+..|
T Consensus 10 gp~De~giP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 10 GPVDESGIPLSNVDRPKDWYKTMF 33 (47)
T ss_pred CccccCCCccccccchhHHHHHHH
Confidence 345566677789999999999876
No 209
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.07 E-value=38 Score=21.17 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCeeecCCccCCCC-cceEEEEeCCCCcEE
Q 024790 210 VYKTAEAIKLFGGKVTREPGPLPGI-NTKITACLDPDGWKT 249 (262)
Q Consensus 210 l~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~~DP~G~~i 249 (262)
+-+..+-|.+.|..+........+. ...++|++|++|+.+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 4556678899999988765433332 225799999999876
No 210
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.00 E-value=48 Score=21.21 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=24.0
Q ss_pred CceeEEEEEecC----HHHHHHHHHHhCCeeec
Q 024790 198 NAYAQIAIGTDD----VYKTAEAIKLFGGKVTR 226 (262)
Q Consensus 198 ~~~~~i~~~v~d----l~~~~~~l~~~g~~~~~ 226 (262)
.+-..+.++++| ++++.+.|+++|+++..
T Consensus 39 ~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 39 DAHIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred eeEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 455677788888 99999999999998764
No 211
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=44.32 E-value=30 Score=28.68 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=22.7
Q ss_pred ecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCC
Q 024790 207 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDP 244 (262)
Q Consensus 207 v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP 244 (262)
+.|+.++++.|+++|+-+. ++++.|+||
T Consensus 60 i~D~~~l~~~l~e~gIY~I----------ARIv~FkD~ 87 (316)
T PF13200_consen 60 IKDLKALVKKLKEHGIYPI----------ARIVVFKDP 87 (316)
T ss_pred ccCHHHHHHHHHHCCCEEE----------EEEEEecCh
Confidence 5899999999999999876 455666664
No 212
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=42.64 E-value=54 Score=27.03 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=23.6
Q ss_pred cCCceeEEEEEe------cCHHHHHHHHHHhCCeee
Q 024790 196 KGNAYAQIAIGT------DDVYKTAEAIKLFGGKVT 225 (262)
Q Consensus 196 ~~~~~~~i~~~v------~dl~~~~~~l~~~g~~~~ 225 (262)
.|..+.|+++.| .||+++-+.|+++|++..
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 578999999999 999999999999999987
No 213
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.05 E-value=1.4e+02 Score=21.65 Aligned_cols=99 Identities=17% Similarity=0.362 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHhhcCc-EEEEEecC----CC---CcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEEeCC-
Q 024790 9 GDLDRTIKFYTECLGM-KLLRKRDI----PE---EKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD- 79 (262)
Q Consensus 9 ~d~~~a~~fY~~~lG~-~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d- 79 (262)
.+.++|..||.++|-= ++..-... ++ +.+..+.+.+++.. .+.+ ...+...+....++ .+-+.++|
T Consensus 14 ~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~---f~~l-d~g~~~~f~fneA~-S~~v~~~~q 88 (151)
T COG3865 14 GNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQS---FMAL-DGGPNTSFKFNEAF-SFQVACDDQ 88 (151)
T ss_pred CcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeE---EEEE-cCCCCcCCCcCccE-EEEEEcCCH
Confidence 7899999999999853 33211111 11 23334444444311 1111 12222222222232 23344444
Q ss_pred --HHHHHHHHHHcCCeeecCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024790 80 --VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 123 (262)
Q Consensus 80 --~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~ 123 (262)
++.+..+|...|... .....+.|-.|.-|.|..
T Consensus 89 ~E~Drlwnal~~~g~e~-----------~~cgW~kDKfGVSWQi~p 123 (151)
T COG3865 89 EEIDRLWNALSDNGGEA-----------EACGWLKDKFGVSWQIVP 123 (151)
T ss_pred HHHHHHHHHHhccCcch-----------hcceeEecccCcEEEEcH
Confidence 677788888887521 123457999999999884
No 214
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=39.48 E-value=33 Score=23.72 Aligned_cols=86 Identities=13% Similarity=0.220 Sum_probs=46.1
Q ss_pred eEEEEeCCHHHHHHHHHhhcCcEEEEEecC----CC--CcceeeEeeecCCCceeEEEeeecCCCCCCCCCCCceeEEEE
Q 024790 3 HVVYRVGDLDRTIKFYTECLGMKLLRKRDI----PE--EKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 76 (262)
Q Consensus 3 hv~l~v~d~~~a~~fY~~~lG~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 76 (262)
=+-..|++.+.+.+-.++ -||++...... ++ ++.....-.+++. ..-+.........+ ... -+-++
T Consensus 44 IiRmvV~~~d~A~~~Lee-~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~--diNldYiYAFv~ek---~KA--lli~r 115 (142)
T COG4747 44 IIRMVVDRPDEAHSVLEE-AGFTVRETDVLAVEMEDVPGGLSRIAEVLGDA--DINLDYIYAFVTEK---QKA--LLIVR 115 (142)
T ss_pred eEEEEcCChHHHHHHHHH-CCcEEEeeeEEEEEecCCCCcHHHHHHHHhhc--CcCceeeeeeeecC---ceE--EEEEE
Confidence 356678999999999988 59987654211 00 0000000000000 00111111111111 111 27889
Q ss_pred eCCHHHHHHHHHHcCCeeec
Q 024790 77 VDDVAKTVELIKAKGGKVTR 96 (262)
Q Consensus 77 v~d~~~~~~~l~~~G~~~~~ 96 (262)
|+|++++...|+.+|+++..
T Consensus 116 ~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 116 VEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred hhHHHHHHHHHHHcCCeecC
Confidence 99999999999999998863
No 215
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=39.33 E-value=36 Score=23.58 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=22.4
Q ss_pred ceeEEEEEecCHHHHHHHHHHhCCeee
Q 024790 199 AYAQIAIGTDDVYKTAEAIKLFGGKVT 225 (262)
Q Consensus 199 ~~~~i~~~v~dl~~~~~~l~~~g~~~~ 225 (262)
...||-+.-+|++.+++.|+++|-++.
T Consensus 101 dtDhiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 101 DTDHILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred cCceEEEehhhHHHHHHHHHHcCCccc
Confidence 335777778899999999999998764
No 216
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=38.04 E-value=65 Score=19.22 Aligned_cols=24 Identities=29% Similarity=0.196 Sum_probs=18.8
Q ss_pred EEEEEecCHHHHHHHHHHhCCeee
Q 024790 202 QIAIGTDDVYKTAEAIKLFGGKVT 225 (262)
Q Consensus 202 ~i~~~v~dl~~~~~~l~~~g~~~~ 225 (262)
.+-+.++|.+++.+.|+++|.++.
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEEE
Confidence 444455888899999999998864
No 217
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=37.85 E-value=91 Score=19.97 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=15.8
Q ss_pred EeCCHHHHHHHHHhhcCcEEEEE
Q 024790 7 RVGDLDRTIKFYTECLGMKLLRK 29 (262)
Q Consensus 7 ~v~d~~~a~~fY~~~lG~~~~~~ 29 (262)
...+=..|.++|++ |||+....
T Consensus 61 v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 61 VDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EETT-HHHHHHHHH-CT-EEEEE
T ss_pred EECCCHHHHHHHHH-cCCEEEEE
Confidence 34677789999987 99998754
No 218
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=34.00 E-value=1.4e+02 Score=22.02 Aligned_cols=46 Identities=13% Similarity=0.040 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCeeecCCccC---CCCcceEEEEeC-CCCcEEEEEecc
Q 024790 210 VYKTAEAIKLFGGKVTREPGPL---PGINTKITACLD-PDGWKTVFVDNV 255 (262)
Q Consensus 210 l~~~~~~l~~~g~~~~~~~~~~---~~~~~~~~~~~D-P~G~~ie~~~~~ 255 (262)
+.+..++|++.|+.+.--.... ..+...-+.++| ++|..|.|.|+-
T Consensus 16 L~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~L 65 (159)
T PF10649_consen 16 LAAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQDL 65 (159)
T ss_pred HHHHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeecc
Confidence 3556689999999865433222 112223456777 899999999964
No 219
>PRK03467 hypothetical protein; Provisional
Probab=33.39 E-value=1.3e+02 Score=21.77 Aligned_cols=47 Identities=2% Similarity=-0.222 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHhCCeeecCC-ccCCCCcceEEEEeCCCCcEEEEEeccc
Q 024790 209 DVYKTAEAIKLFGGKVTREP-GPLPGINTKITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 209 dl~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 256 (262)
++....+.|+.+.+=-+... ...++. ...+|+.|+++..+.|+.+++
T Consensus 6 ~~~~I~~fl~~~hvltLa~~~~~~~w~-A~cFY~fd~~~~~l~~~S~~~ 53 (144)
T PRK03467 6 TLTAISRWLAKQHVVTLCVGQEGELWC-ANCFYVFDAQKVAFYLLTEEK 53 (144)
T ss_pred HHHHHHHHHHhCcEEEEEEEcCCCcce-EEEEEEEcCCCeEEEEEcCCC
Confidence 45556666666654322221 222332 356888999999998887654
No 220
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=32.66 E-value=64 Score=21.47 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=20.6
Q ss_pred cCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEE
Q 024790 208 DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 251 (262)
Q Consensus 208 ~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~ 251 (262)
.|+.++-.+|.++|... .++|++|+.-+|
T Consensus 21 ~d~~~L~~~lt~~GF~~---------------tl~D~~G~~HeL 49 (96)
T PF11080_consen 21 TDINELNNHLTRAGFST---------------TLTDEDGNPHEL 49 (96)
T ss_pred HHHHHHHHHHHhcCcee---------------EEecCCCCEeec
Confidence 47888889999887653 366666666554
No 221
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.41 E-value=1.1e+02 Score=23.96 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=19.2
Q ss_pred ecChhhhHHHHHHhcCCeeeeec
Q 024790 138 VGDLDRSINFYEQAFGMELLRKR 160 (262)
Q Consensus 138 v~d~~~~~~FY~~~lG~~~~~~~ 160 (262)
..|..+++.||.+.||+.+....
T Consensus 144 sa~~~e~a~wy~dyLGleie~~h 166 (246)
T KOG4657|consen 144 SADIHEAASWYNDYLGLEIEAGH 166 (246)
T ss_pred hhccHHHHHHHHHhcCceeeecc
Confidence 45888999999999999987543
No 222
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=29.96 E-value=62 Score=22.44 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=18.2
Q ss_pred eEEEEeCCHHHHHHHHHHcCCee
Q 024790 72 HFGIAVDDVAKTVELIKAKGGKV 94 (262)
Q Consensus 72 ~i~~~v~d~~~~~~~l~~~G~~~ 94 (262)
|+-++-+|++++.++|+++|.++
T Consensus 104 hiLVr~~dLekAv~~L~eaGhev 126 (128)
T COG3603 104 HILVREEDLEKAVKALEEAGHEV 126 (128)
T ss_pred eEEEehhhHHHHHHHHHHcCCcc
Confidence 34455568999999999999875
No 223
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=28.54 E-value=73 Score=14.77 Aligned_cols=14 Identities=21% Similarity=0.119 Sum_probs=9.7
Q ss_pred eEEEEeCCCCcEEE
Q 024790 237 KITACLDPDGWKTV 250 (262)
Q Consensus 237 ~~~~~~DP~G~~ie 250 (262)
....+.|++|+.|-
T Consensus 7 I~~i~~D~~G~lWi 20 (24)
T PF07494_consen 7 IYSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEEE-TTSCEEE
T ss_pred EEEEEEcCCcCEEE
Confidence 34568999998874
No 224
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=27.41 E-value=3.1e+02 Score=21.67 Aligned_cols=95 Identities=13% Similarity=0.193 Sum_probs=53.5
Q ss_pred EEEECCCCCEEEEEEcCCCCC---------CceeEEeeecChhhhHHHHHHhcCCeeeeeccCcCccceeeeeccCCCCc
Q 024790 109 AFIEDPDGYKFELLERGPTPE---------PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDK 179 (262)
Q Consensus 109 ~~~~DP~G~~iel~~~~~~~~---------~~~~v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (262)
+.|.|-||.++- ......|. .=-.|.++++-..+.+.+|++.||.+...- ++ ++
T Consensus 9 lIFtDlD~TLl~-~~ye~~pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~~p~------------ia----En 71 (274)
T COG3769 9 LIFTDLDGTLLP-HSYEWQPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQGLPL------------IA----EN 71 (274)
T ss_pred EEEEcccCcccC-CCCCCCccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCCCce------------ee----cC
Confidence 567999999886 22222221 112477777788888899999999884211 11 11
Q ss_pred ceEEEEeeecCCcc--cccCCceeEEEEE--ecCHHHHHHHHHHh
Q 024790 180 NVVLELTYNYGVTD--YDKGNAYAQIAIG--TDDVYKTAEAIKLF 220 (262)
Q Consensus 180 ~~~~~l~~~~~~~~--~~~~~~~~~i~~~--v~dl~~~~~~l~~~ 220 (262)
+..|.+...+-+.+ +..-.++.|+.+. +..+.+..++|+++
T Consensus 72 G~aI~~p~~~~~~~~~~r~~~g~~~~elg~~l~~ire~l~kLee~ 116 (274)
T COG3769 72 GAAIYLPKGWFPFDGKPREISGISHIELGKVLEKIREKLDKLEEH 116 (274)
T ss_pred CceEEecccccccCCCCceecceEeeehhhhHHHHHHHHHHHHHH
Confidence 22233322221111 1122477777766 45777777777654
No 225
>PF11633 SUD-M: Single-stranded poly(A) binding domain; InterPro: IPR024375 This domain identifies non-structural protein 3 (Nsp3). It is found in human SARS coronavirus polyprotein 1a and 1ab, and in related coronavirus polyproteins [].; PDB: 2KQV_A 2W2G_A 2WCT_D 2JZE_A 2JZF_A 2RNK_A 2JZD_A.
Probab=26.75 E-value=1.7e+02 Score=20.86 Aligned_cols=48 Identities=15% Similarity=0.005 Sum_probs=28.3
Q ss_pred ceeEEEEEecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEecccccc
Q 024790 199 AYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFLK 259 (262)
Q Consensus 199 ~~~~i~~~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~~~~ 259 (262)
....+++.+-|..+..+-|++.|+.+.++ +.+-+|..+.++.+.+..+
T Consensus 34 ~~g~~~pvc~D~~A~~k~lkr~gv~~~eg-------------l~t~~G~~fY~Ys~~~Pl~ 81 (142)
T PF11633_consen 34 ETGLLCPVCIDYPAFCKTLKRKGVDPKEG-------------LQTVDGVQFYFYSSKTPLT 81 (142)
T ss_dssp HHT-EEEEETT-HHHHHHHHHTTS---SE-------------EEES-SSEEEEE-TTS-HH
T ss_pred hcCcEEEEEeccHHHHHHHhccCcccccc-------------eEEecceEEEEEecCCcHH
Confidence 34467777889899999999988887654 4455667777776666544
No 226
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.37 E-value=1.2e+02 Score=19.09 Aligned_cols=40 Identities=10% Similarity=-0.026 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCeeecCCccCCCC-cceEEEEeCCCCcEE
Q 024790 210 VYKTAEAIKLFGGKVTREPGPLPGI-NTKITACLDPDGWKT 249 (262)
Q Consensus 210 l~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~~DP~G~~i 249 (262)
+-+...-|.+.|..+........+. .-.++|++|.+|..+
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl 55 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTL 55 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCcc
Confidence 4556678889999987655333221 125789999999876
No 227
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.25 E-value=1.6e+02 Score=17.68 Aligned_cols=26 Identities=31% Similarity=0.245 Sum_probs=19.3
Q ss_pred CceeEEEEeCC---HHHHHHHHHHcCCee
Q 024790 69 GFGHFGIAVDD---VAKTVELIKAKGGKV 94 (262)
Q Consensus 69 ~~~~i~~~v~d---~~~~~~~l~~~G~~~ 94 (262)
+...+.+++.+ ++++.+.|+++|+.+
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 33456777765 678899999999865
No 228
>PF08379 Bact_transglu_N: Bacterial transglutaminase-like N-terminal region; InterPro: IPR013589 This region is found towards the N terminus of various archaeal and bacterial hypothetical proteins. Some of these are annotated as being transglutaminase-like proteins, and in fact contain a transglutaminase-like superfamily domain (IPR002931 from INTERPRO).
Probab=24.71 E-value=1.1e+02 Score=19.38 Aligned_cols=26 Identities=19% Similarity=0.055 Sum_probs=21.2
Q ss_pred eEEEEeCCCCcEEEEEeccccccccC
Q 024790 237 KITACLDPDGWKTVFVDNVDFLKELE 262 (262)
Q Consensus 237 ~~~~~~DP~G~~ie~~~~~~~~~~~~ 262 (262)
......|..||.+..+.-...+++|+
T Consensus 48 ~~~~~~D~fGN~v~~~~~~~ph~~l~ 73 (82)
T PF08379_consen 48 RVREYTDFFGNRVHRFSFPEPHKELT 73 (82)
T ss_pred EEEEEECCCCCEEEEEEECCCceEEE
Confidence 56678999999999998877777763
No 229
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.43 E-value=89 Score=18.65 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=17.0
Q ss_pred eEEEEEe-cCHHHHHHHHHHhCCee
Q 024790 201 AQIAIGT-DDVYKTAEAIKLFGGKV 224 (262)
Q Consensus 201 ~~i~~~v-~dl~~~~~~l~~~g~~~ 224 (262)
..+.+.+ +|.+++.+.|+++|+++
T Consensus 45 ~~i~v~~~~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 45 LRISFKTQEDRERAKEILKEAGYEV 69 (69)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCcC
Confidence 3344433 47889999999999864
No 230
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=23.59 E-value=2.3e+02 Score=19.19 Aligned_cols=34 Identities=9% Similarity=-0.077 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccc
Q 024790 211 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 211 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 256 (262)
.++.+.|+++|++ .++.|+.+|...+|-.++..+
T Consensus 27 PE~~a~lk~agi~------------nYSIfLde~~n~lFgy~E~~d 60 (105)
T COG3254 27 PELLALLKEAGIR------------NYSIFLDEEENLLFGYWEYED 60 (105)
T ss_pred HHHHHHHHHcCCc------------eeEEEecCCcccEEEEEEEcC
Confidence 4566677777776 367788888889888888764
No 231
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=23.47 E-value=74 Score=24.53 Aligned_cols=13 Identities=23% Similarity=0.018 Sum_probs=10.5
Q ss_pred ceEEEEeCCCCcE
Q 024790 236 TKITACLDPDGWK 248 (262)
Q Consensus 236 ~~~~~~~DP~G~~ 248 (262)
+...|-.||+||.
T Consensus 144 gyqLy~SdPSGny 156 (249)
T KOG0178|consen 144 GYQLYQSDPSGNY 156 (249)
T ss_pred ceEEEecCCCCCc
Confidence 4678899999985
No 232
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.30 E-value=1.7e+02 Score=17.13 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=18.6
Q ss_pred ceeEEEEEecC---HHHHHHHHHHhCCeee
Q 024790 199 AYAQIAIGTDD---VYKTAEAIKLFGGKVT 225 (262)
Q Consensus 199 ~~~~i~~~v~d---l~~~~~~l~~~g~~~~ 225 (262)
...++.+.+.+ ++.+.+.|++.|.++.
T Consensus 43 ~~~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 43 VEVELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 33445555554 4588999999998875
No 233
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.29 E-value=3.1e+02 Score=20.20 Aligned_cols=57 Identities=16% Similarity=0.061 Sum_probs=36.4
Q ss_pred ceeEEEEEecCHHHHHHHHHHhCCeeec--CCcc------------CC-----CCcceEEEEeCCCCcEEEEEecc
Q 024790 199 AYAQIAIGTDDVYKTAEAIKLFGGKVTR--EPGP------------LP-----GINTKITACLDPDGWKTVFVDNV 255 (262)
Q Consensus 199 ~~~~i~~~v~dl~~~~~~l~~~g~~~~~--~~~~------------~~-----~~~~~~~~~~DP~G~~ie~~~~~ 255 (262)
+...+.+++++.....+-.+.+|.++.. ++.. .. .+.-|..|+-|++|.........
T Consensus 64 ~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v 139 (157)
T COG1225 64 GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKV 139 (157)
T ss_pred CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCC
Confidence 6667777777777777666666655332 2211 01 12347889999999999888543
No 234
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=23.02 E-value=1.5e+02 Score=22.80 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=27.4
Q ss_pred cCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEE
Q 024790 208 DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 252 (262)
Q Consensus 208 ~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~ 252 (262)
.|++.++++|+..|...-.-.....-..+.+.....|+|..-.++
T Consensus 31 gd~~~A~~~lr~~g~~~a~kk~~r~~~eG~i~~~i~~~~~~~~lv 75 (198)
T PRK12332 31 GDMEKAIEWLREKGLAKAAKKAGRVAAEGLVGSYIHTGGRIGVLV 75 (198)
T ss_pred CCHHHHHHHHHHhhhhHHHHhccccccCceEEEEEecCCCEEEEE
Confidence 499999999999997765433333222345555555555544443
No 235
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=22.92 E-value=67 Score=16.43 Aligned_cols=17 Identities=29% Similarity=0.849 Sum_probs=12.9
Q ss_pred eCCHHHHHHHHHhhcCc
Q 024790 8 VGDLDRTIKFYTECLGM 24 (262)
Q Consensus 8 v~d~~~a~~fY~~~lG~ 24 (262)
..|.++|..+|++.|.+
T Consensus 12 ~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 12 QGDYEKAIEYYEQALAL 28 (36)
T ss_dssp CT-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 46889999999997643
No 236
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=22.55 E-value=1.4e+02 Score=26.51 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=25.8
Q ss_pred HHHHHHhCCeeecC-CccCCCCcceEEEEeCCCCcEEEE
Q 024790 214 AEAIKLFGGKVTRE-PGPLPGINTKITACLDPDGWKTVF 251 (262)
Q Consensus 214 ~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~DP~G~~ie~ 251 (262)
...|.++|.++..- .....+ ++++-++|+||+..|-
T Consensus 16 a~~La~~g~~vt~~ea~~~~G--Gk~~s~~~~dg~~~E~ 52 (485)
T COG3349 16 AYELADAGYDVTLYEARDRLG--GKVASWRDSDGNHVEH 52 (485)
T ss_pred HHHHHhCCCceEEEeccCccC--ceeeeeecCCCCeeee
Confidence 34678888776542 333444 5899999999999874
No 237
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=21.80 E-value=1e+02 Score=24.72 Aligned_cols=52 Identities=10% Similarity=0.001 Sum_probs=34.5
Q ss_pred cCHHHHHHHHHHhCCeeecCCccCC--C--CcceEEEEeCCCCcEEEEEecccccc
Q 024790 208 DDVYKTAEAIKLFGGKVTREPGPLP--G--INTKITACLDPDGWKTVFVDNVDFLK 259 (262)
Q Consensus 208 ~dl~~~~~~l~~~g~~~~~~~~~~~--~--~~~~~~~~~DP~G~~ie~~~~~~~~~ 259 (262)
-..++..+..++--+-+..+|.+.. + ....++|+.||+|..+..+.++.-.+
T Consensus 210 GT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~ 265 (280)
T KOG2792|consen 210 GTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDAD 265 (280)
T ss_pred CCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHH
Confidence 3455666666666677777665532 1 12367899999999999888765433
No 238
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=21.66 E-value=1.3e+02 Score=24.70 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=15.4
Q ss_pred cCHHHHHHHHHHhCCeee
Q 024790 208 DDVYKTAEAIKLFGGKVT 225 (262)
Q Consensus 208 ~dl~~~~~~l~~~g~~~~ 225 (262)
.|++.+++|+.+.|+..+
T Consensus 17 ~nl~~l~~ri~~~~~~tV 34 (294)
T PF14883_consen 17 RNLDKLIQRIKDMGINTV 34 (294)
T ss_pred HHHHHHHHHHHHcCCCEE
Confidence 489999999999998744
No 239
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=21.57 E-value=3.5e+02 Score=20.11 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=22.6
Q ss_pred ceeEEeeec-ChhhhHHHHHHhcCCeeeee
Q 024790 131 LCQVMLRVG-DLDRSINFYEQAFGMELLRK 159 (262)
Q Consensus 131 ~~~v~l~v~-d~~~~~~FY~~~lG~~~~~~ 159 (262)
-..|+|.|+ .=.++...|++.|||.+.+.
T Consensus 106 A~yvsLHVR~SNraAl~LY~~tl~F~v~ev 135 (193)
T KOG3235|consen 106 AKYVSLHVRKSNRAALHLYKNTLGFVVCEV 135 (193)
T ss_pred ceEEEEeeecccHHHHHhhhhccceEEeec
Confidence 457888886 55677899999999998764
No 240
>PHA02754 hypothetical protein; Provisional
Probab=20.38 E-value=2e+02 Score=16.99 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEEEEeccc
Q 024790 212 KTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 256 (262)
Q Consensus 212 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 256 (262)
++.++|.++|+-+.+-..-...| .+++.+ -.||..|++.+.+.
T Consensus 22 elkD~LSe~GiYi~RIkai~~SG-dkIVVi-~aD~I~i~ls~Te~ 64 (67)
T PHA02754 22 ELKDILSEAGIYIDRIKAITTSG-DKIVVI-TADAIKIELSETEK 64 (67)
T ss_pred HHHHHHhhCceEEEEEEEEEecC-CEEEEE-EcceEEEEEEeeee
Confidence 45578889998877543222222 245433 35789999887653
No 241
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=20.23 E-value=79 Score=24.85 Aligned_cols=42 Identities=10% Similarity=0.089 Sum_probs=25.9
Q ss_pred EEEecCHHHHHHHHHHhCCeeecCCccCCCCcceEEEEeCCCCcEEE
Q 024790 204 AIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTV 250 (262)
Q Consensus 204 ~~~v~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DP~G~~ie 250 (262)
+|.-.|.+.+.+.| .|+++.+.|.. |..-.+++.||||+..-
T Consensus 183 ~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 224 (228)
T PRK06704 183 SIREERPELLTKLL--PTIDFTKLPSK---QPVLLFNVKQPSSYSCM 224 (228)
T ss_pred HHHhcCHHHHHHHh--ccceeeecccc---cceEEEEeeCCCccchh
Confidence 34445666666644 56777765432 11346789999998653
No 242
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.19 E-value=2.2e+02 Score=17.52 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=17.5
Q ss_pred EEEEeCCHHHHHHHHHHcCCeee
Q 024790 73 FGIAVDDVAKTVELIKAKGGKVT 95 (262)
Q Consensus 73 i~~~v~d~~~~~~~l~~~G~~~~ 95 (262)
+.+..+|.+.+.+.|+++|+.+.
T Consensus 45 l~~~~~d~~~i~~~l~~~~i~~~ 67 (73)
T PF11823_consen 45 LRFEPEDLEKIKEILEENGIEYE 67 (73)
T ss_pred EEEChhhHHHHHHHHHHCCCCee
Confidence 44444689999999999998763
Done!