Query         024791
Match_columns 262
No_of_seqs    307 out of 1278
Neff          4.8 
Searched_HMMs 46136
Date          Fri Mar 29 07:26:43 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024791hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 cd00018 AP2 DNA-binding domain  99.8 2.3E-21   5E-26  140.4   7.6   61   73-133     1-61  (61)
  2 smart00380 AP2 DNA-binding dom  99.8 6.9E-21 1.5E-25  139.6   8.2   63   74-136     1-63  (64)
  3 PHA00280 putative NHN endonucl  99.3 1.8E-12 3.9E-17  107.1   6.6   56   69-127    63-119 (121)
  4 PF00847 AP2:  AP2 domain;  Int  99.1 1.6E-10 3.5E-15   81.6   5.7   52   73-124     1-56  (56)
  5 PF14657 Integrase_AP2:  AP2-li  72.0      16 0.00034   24.8   5.6   37   85-121     1-41  (46)
  6 cd00801 INT_P4 Bacteriophage P  49.5      39 0.00084   30.4   5.5   39   83-121     9-49  (357)
  7 PHA02601 int integrase; Provis  49.4      26 0.00057   31.9   4.4   44   77-121     2-46  (333)
  8 PF13356 DUF4102:  Domain of un  43.9      71  0.0015   24.2   5.4   34   84-117    35-70  (89)
  9 PRK09692 integrase; Provisiona  37.4      94   0.002   29.6   6.3   35   78-112    33-73  (413)
 10 PF05036 SPOR:  Sporulation rel  34.7      23  0.0005   24.9   1.3   24   95-118    42-65  (76)
 11 PF08846 DUF1816:  Domain of un  31.0      95  0.0021   23.6   4.1   39   85-123     9-47  (68)
 12 PHA03308 transcriptional regul  29.9      54  0.0012   35.6   3.5   10  119-128  1333-1342(1463)
 13 PF14112 DUF4284:  Domain of un  29.1      37 0.00081   27.9   1.8   19   97-115     2-20  (122)
 14 PF00352 TBP:  Transcription fa  28.3 1.9E+02  0.0041   21.9   5.5   44   75-121    38-82  (86)
 15 PF07494 Reg_prop:  Two compone  25.7      51  0.0011   19.4   1.5   11   95-105    14-24  (24)
 16 PF08471 Ribonuc_red_2_N:  Clas  22.1      95  0.0021   25.0   2.9   20  102-121    71-90  (93)

No 1  
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant  development contain two copies.
Probab=99.85  E-value=2.3e-21  Score=140.42  Aligned_cols=61  Identities=61%  Similarity=1.019  Sum_probs=57.6

Q ss_pred             CceeeeEECCCCcEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 024791           73 CCYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLL  133 (262)
Q Consensus        73 S~YRGVr~r~~GkW~AeI~~p~~~kri~LGtf~T~EeAArAYD~AAl~~~G~~A~lNFP~~  133 (262)
                      |+||||+++++|||+|+|+.+..++++|||+|+|+||||+|||.|+++++|..+.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            5699999998899999999966699999999999999999999999999999999999974


No 2  
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.84  E-value=6.9e-21  Score=139.58  Aligned_cols=63  Identities=59%  Similarity=0.987  Sum_probs=60.0

Q ss_pred             ceeeeEECCCCcEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCccCC
Q 024791           74 CYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLLAHQ  136 (262)
Q Consensus        74 ~YRGVr~r~~GkW~AeI~~p~~~kri~LGtf~T~EeAArAYD~AAl~~~G~~A~lNFP~~~~~  136 (262)
                      +|+||+++++|||+|+|+.|.+++++|||+|+|+||||+|||.|+++++|..+.+|||...++
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            499999998999999999999999999999999999999999999999999999999997764


No 3  
>PHA00280 putative NHN endonuclease
Probab=99.34  E-value=1.8e-12  Score=107.14  Aligned_cols=56  Identities=13%  Similarity=0.158  Sum_probs=50.4

Q ss_pred             CCCCCceeeeEEC-CCCcEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHhcCCCCC
Q 024791           69 SSTGCCYRGVRMR-SWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKGRSAF  127 (262)
Q Consensus        69 s~~sS~YRGVr~r-~~GkW~AeI~~p~~~kri~LGtf~T~EeAArAYD~AAl~~~G~~A~  127 (262)
                      +.++|+|+||.++ ..|||+|+|+.  +||+++||.|+++|+|+.||+ ++.+++|.+|.
T Consensus        63 ~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         63 KSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            4567779999987 67999999999  999999999999999999997 77889998874


No 4  
>PF00847 AP2:  AP2 domain;  InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.10  E-value=1.6e-10  Score=81.59  Aligned_cols=52  Identities=29%  Similarity=0.482  Sum_probs=45.2

Q ss_pred             CceeeeEEC-CCCcEEEEEecCCC---CeEEeccCCCCHHHHHHHHHHHHHHhcCC
Q 024791           73 CCYRGVRMR-SWGKWVSEIREPRK---KSRIWLGTYPIPEMAARAHDVAALAIKGR  124 (262)
Q Consensus        73 S~YRGVr~r-~~GkW~AeI~~p~~---~kri~LGtf~T~EeAArAYD~AAl~~~G~  124 (262)
                      |+|+||+++ ..++|+|+|+++..   +++++||.|+++++|+++|+.+++.++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            569999887 57999999999422   49999999999999999999999999874


No 5  
>PF14657 Integrase_AP2:  AP2-like DNA-binding integrase domain
Probab=72.04  E-value=16  Score=24.80  Aligned_cols=37  Identities=11%  Similarity=0.182  Sum_probs=28.7

Q ss_pred             cEEEEEe--cCC--CCeEEeccCCCCHHHHHHHHHHHHHHh
Q 024791           85 KWVSEIR--EPR--KKSRIWLGTYPIPEMAARAHDVAALAI  121 (262)
Q Consensus        85 kW~AeI~--~p~--~~kri~LGtf~T~EeAArAYD~AAl~~  121 (262)
                      +|...|.  .+.  +.++++-+.|.|..||-.+.......+
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~   41 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAEL   41 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence            5888883  443  447889999999999999988776655


No 6  
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements.  They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=49.54  E-value=39  Score=30.40  Aligned_cols=39  Identities=28%  Similarity=0.372  Sum_probs=27.5

Q ss_pred             CCcEEEEEecCCCCeEEeccCCC--CHHHHHHHHHHHHHHh
Q 024791           83 WGKWVSEIREPRKKSRIWLGTYP--IPEMAARAHDVAALAI  121 (262)
Q Consensus        83 ~GkW~AeI~~p~~~kri~LGtf~--T~EeAArAYD~AAl~~  121 (262)
                      .+.|..+++..++.+++.||+|+  +.++|..........+
T Consensus         9 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~A~~~~~~~~~~~   49 (357)
T cd00801           9 SKSWRFRYRLAGKRKRLTLGSYPAVSLAEAREKADEARALL   49 (357)
T ss_pred             CEEEEEEeccCCceeEEeCcCCCCCCHHHHHHHHHHHHHHH
Confidence            35699998886666788899996  6667666655544333


No 7  
>PHA02601 int integrase; Provisional
Probab=49.42  E-value=26  Score=31.91  Aligned_cols=44  Identities=25%  Similarity=0.329  Sum_probs=29.3

Q ss_pred             eeEECCCCcEEEEEecC-CCCeEEeccCCCCHHHHHHHHHHHHHHh
Q 024791           77 GVRMRSWGKWVSEIREP-RKKSRIWLGTYPIPEMAARAHDVAALAI  121 (262)
Q Consensus        77 GVr~r~~GkW~AeI~~p-~~~kri~LGtf~T~EeAArAYD~AAl~~  121 (262)
                      +|++.+.|+|.++++.. ..|+++. .+|.|..||-...+.....+
T Consensus         2 ~~~~~~~g~w~~~~~~~~~~g~r~~-~~f~tk~eA~~~~~~~~~~~   46 (333)
T PHA02601          2 AVRKLKDGKWLCEIYPNGRDGKRIR-KRFATKGEALAFENYTMAEV   46 (333)
T ss_pred             ceEEcCCCCEEEEEEECCCCCchhh-hhhcCHHHHHHHHHHHHHhc
Confidence            46666778999999852 2366655 36999988876655543333


No 8  
>PF13356 DUF4102:  Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=43.93  E-value=71  Score=24.16  Aligned_cols=34  Identities=26%  Similarity=0.255  Sum_probs=23.2

Q ss_pred             CcEEEEEecCCCCeEEeccCCCC--HHHHHHHHHHH
Q 024791           84 GKWVSEIREPRKKSRIWLGTYPI--PEMAARAHDVA  117 (262)
Q Consensus        84 GkW~AeI~~p~~~kri~LGtf~T--~EeAArAYD~A  117 (262)
                      ..|.-+.+..++.+++-||.|+.  ..+|.......
T Consensus        35 kt~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~a~~~   70 (89)
T PF13356_consen   35 KTFYFRYRINGKRRRITLGRYPELSLAEAREKAREL   70 (89)
T ss_dssp             EEEEEEEEETTEEEEEEEEECTTS-HHHHHHHHHHH
T ss_pred             eEEEEEEEecceEEEeccCCCccCCHHHHHHHHHHH
Confidence            34888888755667899999976  55555444433


No 9  
>PRK09692 integrase; Provisional
Probab=37.35  E-value=94  Score=29.60  Aligned_cols=35  Identities=26%  Similarity=0.418  Sum_probs=21.8

Q ss_pred             eEECCCC--cEEEEEecCCCC--eEEeccCCC--CHHHHHH
Q 024791           78 VRMRSWG--KWVSEIREPRKK--SRIWLGTYP--IPEMAAR  112 (262)
Q Consensus        78 Vr~r~~G--kW~AeI~~p~~~--kri~LGtf~--T~EeAAr  112 (262)
                      |+.++.|  .|..+.+.+.+|  +++-||.|+  |..+|..
T Consensus        33 l~v~~~G~k~~~~rY~~~~~gk~~~~~lG~yp~~sl~~AR~   73 (413)
T PRK09692         33 LLIKSSGSKIWQFRYYRPLTKTRAKKSFGPYPSVTLADARN   73 (413)
T ss_pred             EEEECCCcEEEEEEEecCCCCceeeeeCCCCCCCCHHHHHH
Confidence            4444444  498887755334  447899999  5655544


No 10 
>PF05036 SPOR:  Sporulation related domain;  InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=34.65  E-value=23  Score=24.90  Aligned_cols=24  Identities=21%  Similarity=0.166  Sum_probs=19.1

Q ss_pred             CCeEEeccCCCCHHHHHHHHHHHH
Q 024791           95 KKSRIWLGTYPIPEMAARAHDVAA  118 (262)
Q Consensus        95 ~~kri~LGtf~T~EeAArAYD~AA  118 (262)
                      .--+|++|.|++.++|..+-....
T Consensus        42 ~~yrV~~G~f~~~~~A~~~~~~l~   65 (76)
T PF05036_consen   42 PWYRVRVGPFSSREEAEAALRKLK   65 (76)
T ss_dssp             TCEEEEECCECTCCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCHHHHHHHHHHHh
Confidence            447889999999999988866544


No 11 
>PF08846 DUF1816:  Domain of unknown function (DUF1816);  InterPro: IPR014945  Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes. 
Probab=31.05  E-value=95  Score=23.56  Aligned_cols=39  Identities=18%  Similarity=0.261  Sum_probs=28.1

Q ss_pred             cEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHhcC
Q 024791           85 KWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKG  123 (262)
Q Consensus        85 kW~AeI~~p~~~kri~LGtf~T~EeAArAYD~AAl~~~G  123 (262)
                      .|=++|.--.-.-..|.|-|.|.+||..+.-.-...+..
T Consensus         9 aWWveI~T~~P~ctYyFGPF~s~~eA~~~~~gyieDL~~   47 (68)
T PF08846_consen    9 AWWVEIETQNPNCTYYFGPFDSREEAEAALPGYIEDLES   47 (68)
T ss_pred             cEEEEEEcCCCCEEEEeCCcCCHHHHHHHhccHHHHHHh
Confidence            355777764455788999999999999886555444433


No 12 
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=29.89  E-value=54  Score=35.61  Aligned_cols=10  Identities=30%  Similarity=0.508  Sum_probs=6.7

Q ss_pred             HHhcCCCCCC
Q 024791          119 LAIKGRSAFL  128 (262)
Q Consensus       119 l~~~G~~A~l  128 (262)
                      ...||++.++
T Consensus      1333 vaawgrdtvi 1342 (1463)
T PHA03308       1333 VAAWGRDTVI 1342 (1463)
T ss_pred             HHHhcccccc
Confidence            4468888753


No 13 
>PF14112 DUF4284:  Domain of unknown function (DUF4284)
Probab=29.05  E-value=37  Score=27.88  Aligned_cols=19  Identities=16%  Similarity=0.517  Sum_probs=14.6

Q ss_pred             eEEeccCCCCHHHHHHHHH
Q 024791           97 SRIWLGTYPIPEMAARAHD  115 (262)
Q Consensus        97 kri~LGtf~T~EeAArAYD  115 (262)
                      ..||||+|.+.++--.=.|
T Consensus         2 VsiWiG~f~s~~el~~Y~e   20 (122)
T PF14112_consen    2 VSIWIGNFKSEDELEEYFE   20 (122)
T ss_pred             eEEEEecCCCHHHHHHHhC
Confidence            4699999999887665543


No 14 
>PF00352 TBP:  Transcription factor TFIID (or TATA-binding protein, TBP);  InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=28.31  E-value=1.9e+02  Score=21.91  Aligned_cols=44  Identities=18%  Similarity=0.095  Sum_probs=33.4

Q ss_pred             eeeeEEC-CCCcEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHh
Q 024791           75 YRGVRMR-SWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAI  121 (262)
Q Consensus        75 YRGVr~r-~~GkW~AeI~~p~~~kri~LGtf~T~EeAArAYD~AAl~~  121 (262)
                      |.||..| ..-+-...|..  .||-+..|+ .++|++..|.+.....+
T Consensus        38 fpgl~~r~~~p~~t~~IF~--sGki~itGa-ks~~~~~~a~~~i~~~L   82 (86)
T PF00352_consen   38 FPGLIYRLRNPKATVLIFS--SGKIVITGA-KSEEEAKKAIEKILPIL   82 (86)
T ss_dssp             ESSEEEEETTTTEEEEEET--TSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEeecCCcEEEEEEc--CCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence            8898776 44466777777  898888886 68889999988776554


No 15 
>PF07494 Reg_prop:  Two component regulator propeller;  InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=25.74  E-value=51  Score=19.44  Aligned_cols=11  Identities=36%  Similarity=1.123  Sum_probs=8.7

Q ss_pred             CCeEEeccCCC
Q 024791           95 KKSRIWLGTYP  105 (262)
Q Consensus        95 ~~kri~LGtf~  105 (262)
                      +..+||+||+.
T Consensus        14 ~~G~lWigT~~   24 (24)
T PF07494_consen   14 SDGNLWIGTYN   24 (24)
T ss_dssp             TTSCEEEEETS
T ss_pred             CCcCEEEEeCC
Confidence            66789999873


No 16 
>PF08471 Ribonuc_red_2_N:  Class II vitamin B12-dependent ribonucleotide reductase;  InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=22.14  E-value=95  Score=25.01  Aligned_cols=20  Identities=20%  Similarity=0.188  Sum_probs=17.4

Q ss_pred             cCCCCHHHHHHHHHHHHHHh
Q 024791          102 GTYPIPEMAARAHDVAALAI  121 (262)
Q Consensus       102 Gtf~T~EeAArAYD~AAl~~  121 (262)
                      |.|+|+|+|..-||.-...|
T Consensus        71 GYF~t~eDA~~FydEl~~mL   90 (93)
T PF08471_consen   71 GYFATEEDAEAFYDELTYML   90 (93)
T ss_pred             CCcCCHHHHHHHHHHHHHHH
Confidence            99999999999999876554


Done!