Query 024791
Match_columns 262
No_of_seqs 307 out of 1278
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 14:30:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 6.2E-26 2.1E-30 166.2 6.2 60 74-133 2-62 (63)
2 1z1b_A Integrase; protein-DNA 81.1 2.2 7.6E-05 37.2 5.6 39 77-119 15-53 (356)
3 3igm_B PF14_0633 protein; AP2 74.9 2.2 7.7E-05 32.0 3.1 27 71-99 4-31 (77)
4 1u3e_M HNH homing endonuclease 72.6 0.58 2E-05 38.8 -0.6 39 75-116 109-147 (174)
5 3jtz_A Integrase; four strande 60.3 18 0.00062 26.9 5.6 44 78-121 28-75 (88)
6 3ju0_A Phage integrase; four s 42.4 40 0.0014 26.0 5.1 48 78-125 28-80 (108)
7 1x60_A Sporulation-specific N- 23.1 40 0.0014 23.5 2.0 21 97-117 46-66 (79)
8 1b69_A Protein (integrase); in 22.9 94 0.0032 22.6 3.9 19 75-93 12-30 (69)
9 1uta_A FTSN, MSGA, cell divisi 19.9 92 0.0031 21.9 3.4 24 95-118 44-67 (81)
10 2ftc_I Mitochondrial ribosomal 16.6 1.9E+02 0.0065 22.7 4.8 36 86-123 80-115 (118)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.92 E-value=6.2e-26 Score=166.20 Aligned_cols=60 Identities=55% Similarity=0.975 Sum_probs=57.2
Q ss_pred ceeeeEECCCCcEEEEEecCCC-CeEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 024791 74 CYRGVRMRSWGKWVSEIREPRK-KSRIWLGTYPIPEMAARAHDVAALAIKGRSAFLNFPLL 133 (262)
Q Consensus 74 ~YRGVr~r~~GkW~AeI~~p~~-~kri~LGtf~T~EeAArAYD~AAl~~~G~~A~lNFP~~ 133 (262)
+||||++++||||+|+|++|.+ |++||||||+|+||||+|||.|+++++|..+.||||++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 4999999999999999999975 79999999999999999999999999999999999985
No 2
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=81.09 E-value=2.2 Score=37.15 Aligned_cols=39 Identities=15% Similarity=0.113 Sum_probs=28.6
Q ss_pred eeEECCCCcEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHH
Q 024791 77 GVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDVAAL 119 (262)
Q Consensus 77 GVr~r~~GkW~AeI~~p~~~kri~LGtf~T~EeAArAYD~AAl 119 (262)
||++++.|.|..+... .|+++.+|. |..+|......+..
T Consensus 15 ~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~ 53 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANI 53 (356)
T ss_dssp TEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHH
Confidence 7877777899877654 788899996 88887666554433
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=74.90 E-value=2.2 Score=31.99 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=21.5
Q ss_pred CCCceeeeEEC-CCCcEEEEEecCCCCeEE
Q 024791 71 TGCCYRGVRMR-SWGKWVSEIREPRKKSRI 99 (262)
Q Consensus 71 ~sS~YRGVr~r-~~GkW~AeI~~p~~~kri 99 (262)
..|+|.||.|. +.+.|.|.-.+ +|++.
T Consensus 4 ~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr 31 (77)
T 3igm_B 4 MSSGYPGVSWNKRMCAWLAFFYD--GASRR 31 (77)
T ss_dssp CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred CCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence 35779999988 67999999998 56543
No 4
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=72.63 E-value=0.58 Score=38.82 Aligned_cols=39 Identities=10% Similarity=0.011 Sum_probs=29.4
Q ss_pred eeeeEECCCCcEEEEEecCCCCeEEeccCCCCHHHHHHHHHH
Q 024791 75 YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPIPEMAARAHDV 116 (262)
Q Consensus 75 YRGVr~r~~GkW~AeI~~p~~~kri~LGtf~T~EeAArAYD~ 116 (262)
++||.+...++|.+.|.. . +.++||.|+|.+|||++|.+
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~Gv 147 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELGL 147 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHTC
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHCc
Confidence 456644334568888887 4 56789999999999999753
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=60.27 E-value=18 Score=26.93 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=30.1
Q ss_pred eEECCCC--cEEEEEecCCCCeEEeccCCC--CHHHHHHHHHHHHHHh
Q 024791 78 VRMRSWG--KWVSEIREPRKKSRIWLGTYP--IPEMAARAHDVAALAI 121 (262)
Q Consensus 78 Vr~r~~G--kW~AeI~~p~~~kri~LGtf~--T~EeAArAYD~AAl~~ 121 (262)
|+..+.| .|+-+.+..++.+++-||.|+ |.++|...-+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 3444444 488888875566778999998 5777777666655444
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=42.38 E-value=40 Score=26.05 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=30.6
Q ss_pred eEECCCC--cEEEEEecCCCCeEEeccCCC--CHHHHHHHHHHHHHHh-cCCC
Q 024791 78 VRMRSWG--KWVSEIREPRKKSRIWLGTYP--IPEMAARAHDVAALAI-KGRS 125 (262)
Q Consensus 78 Vr~r~~G--kW~AeI~~p~~~kri~LGtf~--T~EeAArAYD~AAl~~-~G~~ 125 (262)
|+-.+.| .|+-+.+..++.+++-||.|+ |..+|...-+.+...+ .|.+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l~~GiD 80 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLLAAGID 80 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 3444444 488888875556778899997 4777766665544443 4443
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=23.13 E-value=40 Score=23.54 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=17.5
Q ss_pred eEEeccCCCCHHHHHHHHHHH
Q 024791 97 SRIWLGTYPIPEMAARAHDVA 117 (262)
Q Consensus 97 kri~LGtf~T~EeAArAYD~A 117 (262)
-||++|.|.+.++|..+-+..
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L 66 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARA 66 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHH
Confidence 688999999999998886543
No 8
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=22.94 E-value=94 Score=22.59 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=16.9
Q ss_pred eeeeEECCCCcEEEEEecC
Q 024791 75 YRGVRMRSWGKWVSEIREP 93 (262)
Q Consensus 75 YRGVr~r~~GkW~AeI~~p 93 (262)
+.|+.+|..|+|+..+.+.
T Consensus 12 ~~GesqR~dG~Y~yry~d~ 30 (69)
T 1b69_A 12 KTGESQRKDGRYLYKYIDS 30 (69)
T ss_dssp CTTEEECSSSCEEEEEECT
T ss_pred CCCeEEccCCcEEEEEEcC
Confidence 7799999999999999884
No 9
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=19.87 E-value=92 Score=21.92 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=18.7
Q ss_pred CCeEEeccCCCCHHHHHHHHHHHH
Q 024791 95 KKSRIWLGTYPIPEMAARAHDVAA 118 (262)
Q Consensus 95 ~~kri~LGtf~T~EeAArAYD~AA 118 (262)
.--||++|-|.+.++|..+-+...
T Consensus 44 ~~yRV~vGpf~s~~~A~~~~~~L~ 67 (81)
T 1uta_A 44 GWNRVVIGPVKGKENADSTLNRLK 67 (81)
T ss_dssp SSEEEEESSCBTTTHHHHHHHHHH
T ss_pred cEEEEEECCcCCHHHHHHHHHHHH
Confidence 336899999999999988765543
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=16.59 E-value=1.9e+02 Score=22.67 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=28.5
Q ss_pred EEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHhcC
Q 024791 86 WVSEIREPRKKSRIWLGTYPIPEMAARAHDVAALAIKG 123 (262)
Q Consensus 86 W~AeI~~p~~~kri~LGtf~T~EeAArAYD~AAl~~~G 123 (262)
|+|.|.. ...-+-++...+++.|-.|.-.|+.+|-+
T Consensus 80 wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 80 YVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 9999987 54444577768899999999999988743
Done!