Query 024793
Match_columns 262
No_of_seqs 125 out of 393
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 14:31:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_D 40S ribosomal protein S 100.0 6E-119 2E-123 816.4 19.8 262 1-262 1-262 (265)
2 3u5c_E RP5, S7, YS6, 40S ribos 100.0 1E-118 4E-123 813.3 18.8 260 1-260 1-260 (261)
3 2xzm_W 40S ribosomal protein S 100.0 4E-116 1E-120 796.3 26.4 257 1-257 1-259 (260)
4 3j20_E 30S ribosomal protein S 100.0 1E-109 3E-114 749.2 22.3 238 1-239 1-243 (243)
5 3kbg_A 30S ribosomal protein S 100.0 1.5E-84 5.1E-89 575.7 19.5 203 35-244 1-204 (213)
6 2cqj_A BRMS2, U3 small nucleol 98.3 3.6E-07 1.2E-11 67.6 2.8 49 46-95 12-62 (71)
7 3bbn_D Ribosomal protein S4; s 98.1 3.3E-06 1.1E-10 74.1 5.3 47 51-97 97-143 (201)
8 3j20_D 30S ribosomal protein S 97.9 4E-06 1.4E-10 72.5 3.5 44 52-95 112-157 (180)
9 3u5c_J 40S ribosomal protein S 97.9 2.9E-06 9.8E-11 74.4 1.9 46 51-96 115-162 (197)
10 1c05_A Ribosomal protein S4 de 97.9 1.6E-05 5.4E-10 66.9 5.6 51 44-95 53-103 (159)
11 2vqe_D 30S ribosomal protein S 97.8 2E-05 6.7E-10 69.3 5.5 44 52-95 108-151 (209)
12 3r8n_D 30S ribosomal protein S 97.8 6.2E-06 2.1E-10 72.6 2.2 69 52-120 104-176 (205)
13 2xzm_D Ribosomal protein S4 co 97.8 1.2E-05 4.2E-10 69.4 3.3 44 51-94 115-160 (181)
14 1p9k_A ORF, hypothetical prote 97.6 1.2E-05 4.1E-10 59.7 1.2 52 42-94 21-72 (79)
15 3iz6_C 40S ribosomal protein S 97.5 2E-06 6.8E-11 75.3 -5.0 42 52-93 118-159 (195)
16 1dm9_A Hypothetical 15.5 KD pr 97.2 0.00079 2.7E-08 55.0 7.2 60 39-100 6-65 (133)
17 1ksk_A Ribosomal small subunit 96.8 0.0025 8.7E-08 55.4 6.9 52 41-94 3-54 (234)
18 2k6p_A Uncharacterized protein 96.7 0.00036 1.2E-08 52.7 1.0 54 44-99 3-56 (92)
19 1vio_A Ribosomal small subunit 96.6 0.0039 1.3E-07 54.7 6.7 51 42-94 3-53 (243)
20 3dh3_A Ribosomal large subunit 96.2 0.0085 2.9E-07 54.7 6.7 65 40-107 5-77 (290)
21 3hp7_A Hemolysin, putative; st 96.1 0.0047 1.6E-07 56.4 4.5 52 42-94 7-60 (291)
22 1v9f_A Ribosomal large subunit 95.6 0.0053 1.8E-07 56.2 2.6 53 40-93 15-67 (325)
23 2jan_A Tyrosyl-tRNA synthetase 94.5 0.081 2.8E-06 51.0 7.5 64 43-112 357-420 (432)
24 2do3_A Transcription elongatio 94.4 0.07 2.4E-06 39.4 5.4 47 175-225 18-64 (69)
25 2ckk_A KIN17; beta barrel, rib 94.2 0.095 3.2E-06 42.6 6.2 41 157-200 56-96 (127)
26 1h3f_A Tyrosyl-tRNA synthetase 93.7 0.073 2.5E-06 51.2 5.6 45 41-86 368-412 (432)
27 2ktl_A Tyrosyl-tRNA synthetase 93.1 0.078 2.7E-06 45.1 4.1 75 43-118 51-139 (164)
28 1jil_A Tyrrs, tyrosyl-tRNA syn 92.1 0.027 9.3E-07 53.9 0.0 49 41-90 352-400 (420)
29 2ts1_A Tyrosyl-tRNA synthetase 89.9 0.059 2E-06 51.6 0.0 47 42-89 352-398 (419)
30 1vq8_T 50S ribosomal protein L 85.8 1.3 4.4E-05 35.8 5.5 56 171-229 39-101 (120)
31 3u5e_Y L33, YL33, 60S ribosoma 81.6 3.6 0.00012 33.5 6.5 56 171-229 46-108 (127)
32 1nz9_A Transcription antitermi 80.8 3.7 0.00013 28.0 5.6 28 173-200 3-30 (58)
33 3j21_U 50S ribosomal protein L 79.3 2.2 7.5E-05 34.5 4.5 38 171-211 42-79 (121)
34 4a17_S RPL26, 60S ribosomal pr 69.5 5.7 0.0002 32.6 4.7 39 171-212 45-83 (135)
35 3iz5_Y 60S ribosomal protein L 69.0 4.9 0.00017 33.6 4.2 72 171-254 45-123 (150)
36 3r8s_U 50S ribosomal protein L 68.6 4.3 0.00015 31.7 3.6 35 174-212 3-37 (102)
37 3v2d_Y 50S ribosomal protein L 66.8 3.3 0.00011 32.9 2.6 28 173-200 5-32 (110)
38 2ftc_N Mitochondrial ribosomal 66.8 6.6 0.00023 30.3 4.3 23 178-200 1-23 (96)
39 2zjr_R 50S ribosomal protein L 65.8 4.4 0.00015 32.3 3.2 36 174-212 15-50 (115)
40 4a18_F RPL14; ribosome, eukary 65.8 4.7 0.00016 32.8 3.4 27 175-201 7-33 (126)
41 2zkr_t 60S ribosomal protein L 63.0 4 0.00014 33.9 2.5 55 172-229 46-108 (145)
42 2wg5_A General control protein 60.7 19 0.00064 28.0 5.9 47 137-183 52-104 (109)
43 2e6z_A Transcription elongatio 57.8 4.3 0.00015 28.3 1.6 27 173-199 6-32 (59)
44 3iz5_N 60S ribosomal protein L 56.2 6 0.00021 32.4 2.4 26 175-200 7-32 (134)
45 4gop_B Putative uncharacterize 53.1 40 0.0014 26.4 6.9 77 68-147 27-114 (136)
46 2pi2_A Replication protein A 3 49.4 1E+02 0.0035 27.0 9.6 78 67-147 61-149 (270)
47 4a18_N RPL27, ribosomal protei 48.9 11 0.00038 31.3 2.9 27 175-201 5-31 (144)
48 3j21_5 50S ribosomal protein L 48.2 8.1 0.00028 29.0 1.9 26 175-200 4-29 (83)
49 3izc_N 60S ribosomal protein R 48.1 9.5 0.00033 31.4 2.4 26 175-200 15-40 (138)
50 2joy_A 50S ribosomal protein L 47.1 10 0.00035 29.0 2.3 25 175-199 4-28 (96)
51 1fm0_D Molybdopterin convertin 46.2 45 0.0016 23.2 5.6 23 69-92 52-74 (81)
52 3m9b_A Proteasome-associated A 42.0 40 0.0014 30.3 5.7 51 152-217 133-183 (251)
53 3rpf_C Molybdopterin convertin 40.7 41 0.0014 23.5 4.6 28 66-93 41-68 (74)
54 3p8b_B Transcription antitermi 40.0 15 0.00051 29.5 2.4 29 173-201 90-118 (152)
55 2laq_A Accessory gland-specifi 39.9 15 0.00051 23.5 1.8 19 17-38 2-20 (36)
56 3kdf_D Replication protein A 3 38.7 1.3E+02 0.0046 23.2 9.4 78 67-147 21-109 (132)
57 2l52_A Methanosarcina acetivor 35.4 43 0.0015 24.9 4.2 25 69-93 66-93 (99)
58 2jvv_A Transcription antitermi 35.2 55 0.0019 26.8 5.2 29 172-200 125-153 (181)
59 2in0_A Endonuclease PI-MTUI; h 34.1 50 0.0017 25.6 4.6 27 204-230 53-79 (139)
60 3po0_A Small archaeal modifier 33.4 62 0.0021 23.1 4.7 24 68-92 59-82 (89)
61 3lag_A Uncharacterized protein 30.6 87 0.003 22.9 5.2 75 124-211 17-91 (98)
62 3hrd_D Nicotinate dehydrogenas 29.2 23 0.00077 29.5 1.8 51 40-94 21-79 (160)
63 2iwa_A Glutamine cyclotransfer 26.1 1.6E+02 0.0053 25.8 6.8 60 110-176 127-191 (266)
64 2hbp_A Cytoskeleton assembly c 25.7 58 0.002 23.8 3.2 43 99-155 5-47 (68)
65 3e0e_A Replication protein A; 25.6 1.5E+02 0.005 21.9 5.7 10 174-183 63-72 (97)
66 1zv1_A Doublesex protein; UBA 25.1 26 0.00088 25.4 1.2 28 40-70 25-53 (65)
67 2g1e_A Hypothetical protein TA 24.9 78 0.0027 22.4 3.9 26 68-93 56-84 (90)
68 2x1d_A Acyl-coenzyme A\:6-amin 23.5 1.5E+02 0.005 26.3 6.3 28 40-68 177-204 (357)
69 3iuw_A Activating signal coint 23.4 48 0.0016 24.9 2.5 17 147-163 31-47 (83)
70 3dwg_C 9.5 kDa culture filtrat 23.1 88 0.003 22.5 3.9 25 69-93 60-87 (93)
71 1i2k_A 4-amino-4-deoxychorisma 22.4 1.7E+02 0.0058 25.0 6.3 49 205-255 159-207 (269)
72 3lul_A 4-amino-4-deoxychorisma 22.3 1.5E+02 0.0053 25.6 6.0 49 205-255 160-208 (272)
73 3bbo_W Ribosomal protein L24; 21.8 12 0.00043 32.3 -1.2 27 174-200 68-94 (191)
74 3ers_X TRNA-binding protein YG 21.6 1.6E+02 0.0054 23.1 5.4 26 191-216 15-41 (118)
75 1mkh_A Metrs;, C-terminal doma 20.2 1.3E+02 0.0043 23.1 4.4 17 191-207 14-30 (107)
76 2kbn_A Conserved protein; nucl 20.2 2.8E+02 0.0095 20.8 9.0 54 104-157 43-101 (109)
No 1
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.8e-119 Score=816.40 Aligned_cols=262 Identities=90% Similarity=1.428 Sum_probs=199.3
Q ss_pred CCCCcccccccccCCCceecccccceeccCCCCCCCCCcccchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEeccc
Q 024793 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDK 80 (262)
Q Consensus 1 MarG~~kHlKRl~AP~~W~i~kk~~~~a~kpspGPH~~~~siPL~i~LRdrLg~A~t~rEar~Il~~g~V~VdGkvr~d~ 80 (262)
|||||++|||||+||+||||+||+++|||+||||||++++||||+|||||+||||+|.+||++||+||+|+||||+|+|+
T Consensus 1 Marg~kkHlKRl~AP~~W~l~kk~~~fa~rpspGPHkl~eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~ 80 (265)
T 3iz6_D 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDK 80 (265)
T ss_dssp ------------------------------------------CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEECCCT
T ss_pred CCCCcccccccccCCcccccccccceeccCCCCCCCcchhheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeEEecccCcceeeeeecCCceEEEEeChhhhcceeEEEEeEEEeeCCceEEEccCCeeeecCCCCcccCCeE
Q 024793 81 TYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTI 160 (262)
Q Consensus 81 ~ypVG~mDVIsI~~t~e~fR~l~d~kgrf~~~~I~~eea~~KLcKV~~k~~~~~g~~ql~~hDGrni~~~d~~ik~~Dtv 160 (262)
+|||||||||||++++|+||++||++|+|.+|+|++|||+||||||++|+++++|+|||+|||||||+|+||.||+||||
T Consensus 81 ~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~~~G~pql~tHDGrti~~~dp~ik~~DTv 160 (265)
T 3iz6_D 81 TYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTI 160 (265)
T ss_dssp TCCCCTTCEEECCSSCCEEEEEECTTSCEEEEEECHHHHTCEEEEEEEEECCSSSCCEEEETTSCCCBSCSSCCCTTCEE
T ss_pred CCCCcEEEEEEEcCCCCEEEEEECCCCcEEEEECChHHcceEEEEEEEEEEccCCceEEEeecceEEecCCCCcccCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCeeeeEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceEEEEccCCCceEecCC
Q 024793 161 KLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPK 240 (262)
Q Consensus 161 ~i~l~~~kI~~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~g~~F~T~~~~vfvIG~~~~p~islp~ 240 (262)
+||||+++|+|||||++||+||||||+|+|++|+|++|++|+|||++||++|++|++|+|+++||||||++++||||||+
T Consensus 161 ~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvfvIGk~~kp~IsLp~ 240 (265)
T 3iz6_D 161 KIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPK 240 (265)
T ss_dssp EECSSSCCEEEEECCSTTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEECCCSSCCEEEEGGGEEEEECSSCCCCCCCC
T ss_pred EEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEEEEccCCCeeEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCceeeehHHHHHHHHHHHHhC
Q 024793 241 GKGIKLSIIEEARKRQAAQAAA 262 (262)
Q Consensus 241 ~~gi~~~~~~~~~~~~~~~~~~ 262 (262)
+|||+++++|||++|+++++++
T Consensus 241 ~kg~~~~~~eer~~~~~~~~~~ 262 (265)
T 3iz6_D 241 GKGIKLSIIEEQRKRDAAAQAA 262 (265)
T ss_dssp CC--------------------
T ss_pred CCceeeehHHhHHHHHHHhhhh
Confidence 9999999999999999888753
No 2
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=100.00 E-value=1e-118 Score=813.26 Aligned_cols=260 Identities=68% Similarity=1.122 Sum_probs=256.4
Q ss_pred CCCCcccccccccCCCceecccccceeccCCCCCCCCCcccchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEeccc
Q 024793 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDK 80 (262)
Q Consensus 1 MarG~~kHlKRl~AP~~W~i~kk~~~~a~kpspGPH~~~~siPL~i~LRdrLg~A~t~rEar~Il~~g~V~VdGkvr~d~ 80 (262)
|||||++|||||+||+||||+||+++|||+||||||++++||||++||||+||||+|.+||++||+||+|+||||+|+|+
T Consensus 1 Marg~kkHlKRl~AP~~W~l~kk~~~fa~rps~GPH~l~eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~ 80 (261)
T 3u5c_E 1 MARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDT 80 (261)
T ss_dssp -CCSCCCCCBTTTSCGGGCCCSSSSSBCCCCCSSSSCGGGEEEHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBCCCCT
T ss_pred CCCCcccccccccCCcccccccccceeccCCCCCCCcchhheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeEEecccCcceeeeeecCCceEEEEeChhhhcceeEEEEeEEEeeCCceEEEccCCeeeecCCCCcccCCeE
Q 024793 81 TYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTI 160 (262)
Q Consensus 81 ~ypVG~mDVIsI~~t~e~fR~l~d~kgrf~~~~I~~eea~~KLcKV~~k~~~~~g~~ql~~hDGrni~~~d~~ik~~Dtv 160 (262)
+|||||||||||++++|+||++||++|+|.+|+|++|||+||||||++|+++++|+|||+|||||||+|+||.||+||||
T Consensus 81 ~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~~~G~pql~tHDGrti~~~dp~ik~~Dtv 160 (261)
T 3u5c_E 81 TYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTV 160 (261)
T ss_dssp TCEEETTCEEEETTTTEEEECCBCSSSCBCCEECCTTGGGCEECCEEEEEECGGGCEEEEETTTEEEESCCSSCCTTCEE
T ss_pred CCCCceEEEEEEcCCCCEEEEEECCCCcEEEEECChHHcceEEEEEEEEEEecCCceEEEEecceEEecCCCCcccCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCeeeeEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceEEEEccCCCceEecCC
Q 024793 161 KLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPK 240 (262)
Q Consensus 161 ~i~l~~~kI~~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~g~~F~T~~~~vfvIG~~~~p~islp~ 240 (262)
+|||+++||+|||||++||+||||||+|+|++|+|++|++|+|||++||++|++|++|+|+++||||||++++||||||+
T Consensus 161 ~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvfvIGk~~kp~IsLp~ 240 (261)
T 3u5c_E 161 KIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPK 240 (261)
T ss_dssp EECSSSSCEEEEECCCSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEEECTTSCEEEEEGGGEEECCSSSCCSSCCCT
T ss_pred EEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEEEEccCCCeeEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCceeeehHHHHHHHHHHHH
Q 024793 241 GKGIKLSIIEEARKRQAAQA 260 (262)
Q Consensus 241 ~~gi~~~~~~~~~~~~~~~~ 260 (262)
+|||+++++|||++|++++.
T Consensus 241 ~kg~~~~~~eer~~~~~~~~ 260 (261)
T 3u5c_E 241 GKGIKLSIAEERDRRRAQQG 260 (261)
T ss_dssp TTTCCCCHHHHHHHHTTTTC
T ss_pred CCceeeehHHhHHHHHHhcc
Confidence 99999999999999997653
No 3
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=100.00 E-value=3.6e-116 Score=796.29 Aligned_cols=257 Identities=57% Similarity=0.985 Sum_probs=253.5
Q ss_pred CCCCcccccccccCCCceecccccceeccCCCCCCCCCcccchHHHHHHhhhccccCHHHHHHHHhC--ceEEECCEEec
Q 024793 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQ--RHVLVDGKVRT 78 (262)
Q Consensus 1 MarG~~kHlKRl~AP~~W~i~kk~~~~a~kpspGPH~~~~siPL~i~LRdrLg~A~t~rEar~Il~~--g~V~VdGkvr~ 78 (262)
|||||++|||||+||+||||+||+++|||+||||||++++||||+|||||+|+||+|++||++||+| |+|+||||+|+
T Consensus 1 marG~kkHlKRl~AP~~W~l~kk~~~~a~rpspGPH~~~eslPL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGkvr~ 80 (260)
T 2xzm_W 1 MARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRR 80 (260)
T ss_dssp -CCSCCCCCBGGGSCGGGTCCSSSCSBCCCCCSSSSCSSSCEEHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTEECC
T ss_pred CCCCccccccceeCCccceeccccceEccCCCCCCCccceeehhHhhhhhhhccccchhHHHHHHhccCCeEEECCEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred ccCCCCCcceeEEecccCcceeeeeecCCceEEEEeChhhhcceeEEEEeEEEeeCCceEEEccCCeeeecCCCCcccCC
Q 024793 79 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND 158 (262)
Q Consensus 79 d~~ypVG~mDVIsI~~t~e~fR~l~d~kgrf~~~~I~~eea~~KLcKV~~k~~~~~g~~ql~~hDGrni~~~d~~ik~~D 158 (262)
|++|||||||||||++++|+||++||++|+|.+|+|++|||+||||||++|++++||+|||+|||||||+|+||.||+||
T Consensus 81 D~~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~k~G~~ql~~HDGrti~~~d~~ik~~D 160 (260)
T 2xzm_W 81 DKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGD 160 (260)
T ss_dssp CTTCEECTTCEEEEGGGTEEEEEEECSSSCEEEEECCTTGGGEEEEEEEEEEEETTTEEEEEETTTEEEESCCSSCCTTB
T ss_pred cCCCCCcEEEEEeEcCCCCEEEEEEcCCccEEEEEcChHHcccEEEEEEEEEEccCCceEEEecCCceEeccCCcCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCeeeeEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceEEEEccCCCceEec
Q 024793 159 TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 238 (262)
Q Consensus 159 tv~i~l~~~kI~~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~g~~F~T~~~~vfvIG~~~~p~isl 238 (262)
||+||||++||+|||||++||+||||||+|+|++|+|++++++++|+++||++|++|++|+|+++||||||++++|||||
T Consensus 161 tv~idl~~~kI~d~ikfe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd~~g~~F~T~~~~vfvIG~~~kp~Isl 240 (260)
T 2xzm_W 161 TLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKSWIEL 240 (260)
T ss_dssp EEEEETTTTEEECCCBCCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEECTTCCCEEEEGGGEEEEESTTCCSSCC
T ss_pred eEEEeCCCCceeeEEEecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEeCCCCeEEEEEeeEEEECCCCceeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999867999999
Q ss_pred CCCCceeeehHHHHHHHHH
Q 024793 239 PKGKGIKLSIIEEARKRQA 257 (262)
Q Consensus 239 p~~~gi~~~~~~~~~~~~~ 257 (262)
|+++|||||++|||+++++
T Consensus 241 p~~kgi~l~i~eer~~~~~ 259 (260)
T 2xzm_W 241 PSGDGVRETILEERKRKFS 259 (260)
T ss_dssp SSSSSCCCCHHHHHHHHTC
T ss_pred CCCCCeecchhhhhhhhhc
Confidence 9999999999999999864
No 4
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1e-109 Score=749.16 Aligned_cols=238 Identities=36% Similarity=0.587 Sum_probs=234.5
Q ss_pred CCC-CcccccccccCCCceecccccceeccCCCCCCCCCcccchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecc
Q 024793 1 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTD 79 (262)
Q Consensus 1 Mar-G~~kHlKRl~AP~~W~i~kk~~~~a~kpspGPH~~~~siPL~i~LRdrLg~A~t~rEar~Il~~g~V~VdGkvr~d 79 (262)
||| ||++|||||+||+||||+||+++|||+||||||++++||||++|||||||||+|+|||||||+||+|+||||+|+|
T Consensus 1 Mar~g~kkHlKRl~AP~~W~l~kk~~~~a~rps~GPH~~~~~lPL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGKvr~d 80 (243)
T 3j20_E 1 MARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKD 80 (243)
T ss_dssp --CCSCCCCBCSTTSCTTSCCCTTSSSCBCCCCSCSSCSTTCEEHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTEECCC
T ss_pred CCCcCcccccccccCCcccccccccceeccCCCCCCCccccceeehhhhhhhhccccCHHHHHHHHHCCcEEECCEEecc
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceeEEecccCcceeeeeecCCceEEEEeChhhhcceeEEEEeEEEeeCCceEEEccCCeeeecC---CCCccc
Q 024793 80 KTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYP---DPLIKA 156 (262)
Q Consensus 80 ~~ypVG~mDVIsI~~t~e~fR~l~d~kgrf~~~~I~~eea~~KLcKV~~k~~~~~g~~ql~~hDGrni~~~---d~~ik~ 156 (262)
++|||||||||||++++|+||++||++|+|++|||++|||+||||||++|+++++|+|||+|||||||+|| ||.||+
T Consensus 81 ~~ypvG~mDVIsI~kt~e~fr~i~d~kGr~~~~~I~~eea~~KLcKV~~k~~~~~G~~~l~~hDgr~i~~p~~~d~~ik~ 160 (243)
T 3j20_E 81 YKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYFT 160 (243)
T ss_dssp SSCEECTTCEEEETTTTEEEEEEECSSSCEEEEEECTTTTTEEEECCSCEEEETTTEEEECCSSCCCEECSSSSCSSCSS
T ss_pred ccCCcccceEEEecccCceeEEEecCCCceEEEEeChhhccceEEEEeeeEEccCCeeEEEecCCceEEcccccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCeEEEecCCCeeeeEEEeeCCcEEEEECCCcceeEEEEEeEEEecCC-ccEEEEEcCCCCeEeEeeceEEEEccCCCce
Q 024793 157 NDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDALGHEFATRLGNVFTIGKGSKPW 235 (262)
Q Consensus 157 ~Dtv~i~l~~~kI~~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s-~~~v~i~d~~g~~F~T~~~~vfvIG~~~~p~ 235 (262)
||||+|||+++||+|||||++||+||||||+|+|++|+|++|++++|| +++||++|++|++|+|+++||||||+ ++||
T Consensus 161 ~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d~~g~~F~T~~~~vfvIGk-~kp~ 239 (243)
T 3j20_E 161 SYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGT-DKPK 239 (243)
T ss_dssp CEEEEEETTTTEEEEEEECCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEESSCCCEEEETTTEEEEES-SCSC
T ss_pred CCEEEEECCCCCeeeEEeccCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEcCCCCEEEEEeceEEEECC-CCcc
Confidence 999999999999999999999999999999999999999999999988 99999999999999999999999998 9999
Q ss_pred EecC
Q 024793 236 VSLP 239 (262)
Q Consensus 236 islp 239 (262)
||||
T Consensus 240 islp 243 (243)
T 3j20_E 240 ISLP 243 (243)
T ss_dssp CSCC
T ss_pred ccCC
Confidence 9997
No 5
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=100.00 E-value=1.5e-84 Score=575.74 Aligned_cols=203 Identities=33% Similarity=0.486 Sum_probs=189.8
Q ss_pred CCCCcccchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecccCcceeeeeecCCceEEEEe
Q 024793 35 PHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 114 (262)
Q Consensus 35 PH~~~~siPL~i~LRdrLg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~mDVIsI~~t~e~fR~l~d~kgrf~~~~I 114 (262)
.|++++||||++|||||||||+|+|||||||+||+|+||||+|+|++||||||||||| ++|+||++||++|||++|||
T Consensus 1 ~Hkl~eslPL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsI--t~e~fRli~d~kGrf~~~~I 78 (213)
T 3kbg_A 1 MHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKE 78 (213)
T ss_dssp ---CCSCEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEE--TTEEEEEEECTTSCEEEEEC
T ss_pred CCcchhceeeHHHHhhhhcccccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEe--cCceeEEEecCCCcEEEEEe
Confidence 3999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred ChhhhcceeEEEEeEEEeeCCceEEEccCCeeeecCCCCcccCCeEEEecCCCeeeeEEEeeCCcEEEEECCCcceeEEE
Q 024793 115 RDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGI 194 (262)
Q Consensus 115 ~~eea~~KLcKV~~k~~~~~g~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~~~i~f~~G~~~~v~gG~n~G~vG~ 194 (262)
++|||+||||||++|++++||+|||+|||||||+||||.||+||||++|||++||+|||||++||+||||||+|+||+|+
T Consensus 79 ~~eea~~KLcKV~~k~~~~~G~~~l~~HDGrti~~pd~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~ 158 (213)
T 3kbg_A 79 TKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSIKVGDVLAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGT 158 (213)
T ss_dssp CTTGGGEEEEEEEEEEEEGGGEEEEEETTSCEEEECCTTCCTTCEEEEETTTCCEEEEECCSTTCEEEECSSTTTTCEEE
T ss_pred ChhHccceEEEEEEEEEecCCeeEEEecCccEEEcCCCCcccCCEEEEECCCCceeeEEEcCCCCEEEEECCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeEEEecCC-ccEEEEEcCCCCeEeEeeceEEEEccCCCceEecCCCCce
Q 024793 195 IKNREKHKGS-FETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGI 244 (262)
Q Consensus 195 I~~i~~~~~s-~~~v~i~d~~g~~F~T~~~~vfvIG~~~~p~islp~~~gi 244 (262)
|++|++++|| +++||++ ++|+|+++||||||+ ++|||.++++.=|
T Consensus 159 I~~ie~~~gs~~~iV~v~----~~F~T~~~~vfvIGk-~~p~i~~~p~~~~ 204 (213)
T 3kbg_A 159 ISKIEAKEGSSANLVHFQ----EGFSTIKDHVFMIGS-SKFSFVLSPEEVI 204 (213)
T ss_dssp EEEECCCSCC--CEEEET----TTEEEEGGGEEEEEC-SSCBCC-------
T ss_pred EEEEEEccCCCCCEEEEE----EEEEeeeceEEEEcC-CCccEEeChHHcc
Confidence 9999999999 6899997 689999999999998 7999977665433
No 6
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=3.6e-07 Score=67.61 Aligned_cols=49 Identities=29% Similarity=0.315 Sum_probs=42.8
Q ss_pred HHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCc--ceeEEeccc
Q 024793 46 LVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGF--MDVVSIPKT 95 (262)
Q Consensus 46 i~LRdrLg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~--mDVIsI~~t 95 (262)
.+|- ++|||.|+++|++++.||+|.|||++++.|.|.|.. .|.|++.+.
T Consensus 12 ~~l~-~~gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~~~~ 62 (71)
T 2cqj_A 12 TVLL-KLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDS 62 (71)
T ss_dssp HHHH-HTTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEESCC
T ss_pred HHHH-HhCCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEEEECC
Confidence 3444 479999999999999999999999999999999988 789987553
No 7
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=98.07 E-value=3.3e-06 Score=74.08 Aligned_cols=47 Identities=23% Similarity=0.343 Sum_probs=43.1
Q ss_pred hhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecccCc
Q 024793 51 RLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNE 97 (262)
Q Consensus 51 rLg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~mDVIsI~~t~e 97 (262)
++|+|.|+++|++++.||+|+|||+++++++|.|...|+|++.....
T Consensus 97 r~g~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~gD~I~V~~~~r 143 (201)
T 3bbn_D 97 RLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDEQK 143 (201)
T ss_dssp TTTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECSSTT
T ss_pred HcCCcCCHHHHHHHHhCCcEEeCCEEEeecceecCCCCEEEEccccc
Confidence 45889999999999999999999999999999999999999986433
No 8
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.95 E-value=4e-06 Score=72.49 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=41.7
Q ss_pred hccccCHHHHHHHHhCceEEECCEEecccCCCCCcc--eeEEeccc
Q 024793 52 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFM--DVVSIPKT 95 (262)
Q Consensus 52 Lg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~m--DVIsI~~t 95 (262)
+|||.|+++|++++.||+|.|||+++++|+|.|... |+|++...
T Consensus 112 ~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~~~ 157 (180)
T 3j20_D 112 KGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYART 157 (180)
T ss_dssp HTSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEECSSC
T ss_pred CcccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEEeCC
Confidence 599999999999999999999999999999999998 99999654
No 9
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=97.91 E-value=2.9e-06 Score=74.40 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=41.8
Q ss_pred hhccccCHHHHHHHHhCceEEECCEEecccCCCCCcc--eeEEecccC
Q 024793 51 RLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFM--DVVSIPKTN 96 (262)
Q Consensus 51 rLg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~m--DVIsI~~t~ 96 (262)
++|||.|.++|++++.||+|.|||+++++|+|.|... |.|++..+.
T Consensus 115 r~G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~~~~s 162 (197)
T 3u5c_J 115 KLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTS 162 (197)
T ss_dssp HSSTTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBCCSSS
T ss_pred HccccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEEcCCC
Confidence 3699999999999999999999999999999999998 688887643
No 10
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=97.86 E-value=1.6e-05 Score=66.94 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=44.7
Q ss_pred HHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEeccc
Q 024793 44 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKT 95 (262)
Q Consensus 44 L~i~LRdrLg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~mDVIsI~~t 95 (262)
|--+|.. +|+|.|+++|++++.+|+|+|||+++++++|.|...|+|++...
T Consensus 53 LD~~L~~-~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~ 103 (159)
T 1c05_A 53 LDNLVYR-LGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREK 103 (159)
T ss_dssp HHHHHHH-TTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEECGG
T ss_pred HHHHHHH-cCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCCEEEEeCc
Confidence 4445553 58999999999999999999999999999999999999999653
No 11
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=97.81 E-value=2e-05 Score=69.26 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=41.5
Q ss_pred hccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEeccc
Q 024793 52 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKT 95 (262)
Q Consensus 52 Lg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~mDVIsI~~t 95 (262)
+|+|.|+++|++++.+|+|+|||+++++++|.|...|+|+|...
T Consensus 108 ~g~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~ 151 (209)
T 2vqe_D 108 LGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEK 151 (209)
T ss_dssp TTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGG
T ss_pred hcCcCCHHHHHHHHHCCCEEECCEEeCcCCcCcCCCCEEEEcCc
Confidence 57899999999999999999999999999999999999999763
No 12
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=97.80 E-value=6.2e-06 Score=72.63 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=52.3
Q ss_pred hccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecccCcceeeee---e-cCCceEEEEeChhhhc
Q 024793 52 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLY---D-TKGRFRLHSLRDEEAK 120 (262)
Q Consensus 52 Lg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~mDVIsI~~t~e~fR~l~---d-~kgrf~~~~I~~eea~ 120 (262)
+++|.|+++|++++.+|+|+|||+++++++|.|...|+|+|.......-++- + ...+-+|-|++-+.++
T Consensus 104 ~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V~~~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~ 176 (205)
T 3r8n_D 104 MGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGK 176 (205)
T ss_dssp TSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBCCSSSCSCHHHHHHHHHHTTSCCCSSCCBCSSS
T ss_pred hcchhHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEecCchhhHHHHHHHHHhcccCCCCCeEEEEccc
Confidence 5899999999999999999999999999999999999999987544332221 1 1123355666655544
No 13
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=97.75 E-value=1.2e-05 Score=69.37 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=39.8
Q ss_pred hhccccCHHHHHHHHhCceEEECCEEecccCCCCCcce--eEEecc
Q 024793 51 RLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMD--VVSIPK 94 (262)
Q Consensus 51 rLg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~mD--VIsI~~ 94 (262)
++|||.|.++|++++.||+|.|||+++++|+|.|...| .|++..
T Consensus 115 ~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d~~~I~v~~ 160 (181)
T 2xzm_D 115 KLNLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEKSIDFAS 160 (181)
T ss_dssp HTTCSSSTTHHHHHTTTTCCEETTEECCCSCCBCCSTTSSCEECTT
T ss_pred hccccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCCCceEEEEeC
Confidence 47999999999999999999999999999999999887 577643
No 14
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=97.63 E-value=1.2e-05 Score=59.69 Aligned_cols=52 Identities=21% Similarity=0.173 Sum_probs=47.9
Q ss_pred chHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecc
Q 024793 42 LPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK 94 (262)
Q Consensus 42 iPL~i~LRdrLg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~mDVIsI~~ 94 (262)
+-|--+|.+. |++.+++||++++.+|.|+|||++++++.+.+...|+|++..
T Consensus 21 ~RLdk~L~~~-g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~~ 72 (79)
T 1p9k_A 21 VELCDLLKLE-GWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 72 (79)
T ss_dssp CCHHHHHHHH-TSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETT
T ss_pred chHHHHHHHC-CCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEECC
Confidence 6788888885 999999999999999999999999999999999999999953
No 15
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=97.53 E-value=2e-06 Score=75.32 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=40.1
Q ss_pred hccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEec
Q 024793 52 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIP 93 (262)
Q Consensus 52 Lg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~mDVIsI~ 93 (262)
+|||.|.++|++++.||+|.|||+++++|+|.|...|++.|.
T Consensus 118 ~G~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~gde~~I~ 159 (195)
T 3iz6_C 118 AGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHID 159 (195)
T ss_dssp CCCHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCSSSCSSSSC
T ss_pred ccccCCHHHHHHHHHcCCEEECCEEeCCCCcCcCCCCEEEEE
Confidence 599999999999999999999999999999999999998775
No 16
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=97.21 E-value=0.00079 Score=54.96 Aligned_cols=60 Identities=10% Similarity=0.038 Sum_probs=49.4
Q ss_pred cccchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecccCccee
Q 024793 39 RECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFR 100 (262)
Q Consensus 39 ~~siPL~i~LRdrLg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~mDVIsI~~t~e~fR 100 (262)
.+++-|--||... ++..|...|++++.+|+|+|||+++ .+++.|..+|+|+|...++.|.
T Consensus 6 ~~~~RLDk~L~~~-~~~~SRs~a~~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~~~~~~~ 65 (133)
T 1dm9_A 6 AVEVRLDKWLWAA-RFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERT 65 (133)
T ss_dssp TTCCBHHHHHHHT-TSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEETTEEEE
T ss_pred ccchhHHHHHHHC-CCCCCHHHHHHHHHCCcEEECCEEc-CCCCEeCCCCEEEEEeCCceee
Confidence 3457788888874 3456999999999999999999997 8999999999999976554443
No 17
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=96.77 E-value=0.0025 Score=55.45 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=45.9
Q ss_pred cchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecc
Q 024793 41 CLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK 94 (262)
Q Consensus 41 siPL~i~LRdrLg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~mDVIsI~~ 94 (262)
++-|--+|... + ..++++|++++.+|.|+|||++++++++++...|+|++..
T Consensus 3 ~~RLd~~L~~~-~-~~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD~I~v~~ 54 (234)
T 1ksk_A 3 HMRLDKFIAQQ-L-GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDG 54 (234)
T ss_dssp CEEHHHHHHHH-H-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETT
T ss_pred cccHHHHHHHc-C-CCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEEeC
Confidence 45677788876 3 6789999999999999999999999999999999999964
No 18
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=96.73 E-value=0.00036 Score=52.65 Aligned_cols=54 Identities=9% Similarity=-0.018 Sum_probs=42.9
Q ss_pred HHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecccCcce
Q 024793 44 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENF 99 (262)
Q Consensus 44 L~i~LRdrLg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~mDVIsI~~t~e~f 99 (262)
|--+|.. ++++.++..|++++.+|.|+|||+++ .++|.+..+|+|+|...++.+
T Consensus 3 LD~~L~~-~~~~~sR~~~~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~~~~ 56 (92)
T 2k6p_A 3 IDKFLQS-VGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIE 56 (92)
T ss_dssp HHHHSTT-TTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCE
T ss_pred HHHHHHH-CCCCCCHHHHHHHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeCCceE
Confidence 3445665 45666777799999999999999998 889999999999997644443
No 19
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=96.57 E-value=0.0039 Score=54.71 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=45.1
Q ss_pred chHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecc
Q 024793 42 LPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK 94 (262)
Q Consensus 42 iPL~i~LRdrLg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~mDVIsI~~ 94 (262)
+-|--+|... + ..++++|++++.+|.|+|||+++++++|++...|+|++..
T Consensus 3 ~RLd~~L~~~-~-~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~ 53 (243)
T 1vio_A 3 LRLDKFIAEN-V-GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFED 53 (243)
T ss_dssp EEHHHHHHHH-H-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETT
T ss_pred ccHHHHHHHc-C-CCCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCCEEEEec
Confidence 4567788876 3 6799999999999999999999999999999999999964
No 20
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=96.16 E-value=0.0085 Score=54.67 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=52.6
Q ss_pred ccchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecc--------cCcceeeeeecCC
Q 024793 40 ECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK--------TNENFRLLYDTKG 107 (262)
Q Consensus 40 ~siPL~i~LRdrLg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~mDVIsI~~--------t~e~fR~l~d~kg 107 (262)
+++-|--||.+. +++ ++++|++++.+|.|+|||+++ ++.+.|-..|+|++.. .++.|-++.-+.|
T Consensus 5 ~g~RLdk~La~~-g~~-SR~~a~~lI~~G~V~VNG~~v-~~~~~V~~gD~I~v~~~~i~~~~~ed~~~lvvnKP~G 77 (290)
T 3dh3_A 5 SSVRLNKYISES-GIC-SRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVG 77 (290)
T ss_dssp CCEEHHHHHHTT-TSS-CHHHHHHHHHTTCEEETTEEC-CTTCEECTTCCEEETTEEECCCCGGGCCEEEEEECTT
T ss_pred cchHHHHHHHhC-CCC-CHHHHHHHHHCCCEEECCEEc-cCCcCcCCCCEEEeccccccccccccceEEEEECCCc
Confidence 467788899886 665 999999999999999999999 8999999999999863 2344555555555
No 21
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=96.07 E-value=0.0047 Score=56.38 Aligned_cols=52 Identities=6% Similarity=-0.220 Sum_probs=45.7
Q ss_pred chHHHHHHhhhccccCHHHHHHHHhCceEEECC-E-EecccCCCCCcceeEEecc
Q 024793 42 LPLILVLRNRLKYALTYREVIAILMQRHVLVDG-K-VRTDKTYPAGFMDVVSIPK 94 (262)
Q Consensus 42 iPL~i~LRdrLg~A~t~rEar~Il~~g~V~VdG-k-vr~d~~ypVG~mDVIsI~~ 94 (262)
+-|-.+|-. .+++.|+++|++++.+|.|+||| + +++.+++.|...|.|++..
T Consensus 7 ~RLD~~L~~-~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~I~v~g 60 (291)
T 3hp7_A 7 ERVDVLAYK-QGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKG 60 (291)
T ss_dssp EEHHHHHHH-TTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETT
T ss_pred hhHHHHHHH-cCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCEEEEcc
Confidence 346667765 48899999999999999999999 8 8999999999999999974
No 22
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=95.56 E-value=0.0053 Score=56.20 Aligned_cols=53 Identities=19% Similarity=0.108 Sum_probs=0.0
Q ss_pred ccchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEec
Q 024793 40 ECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIP 93 (262)
Q Consensus 40 ~siPL~i~LRdrLg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~mDVIsI~ 93 (262)
.++.|--+|...+ ...++++|++++.+|.|+|||+++..+++.+...|+|++.
T Consensus 15 ~g~RLd~~L~~~~-~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~ 67 (325)
T 1v9f_A 15 LGQRLDQALAEMF-PDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 67 (325)
T ss_dssp ------------------------------------------------------
T ss_pred CCchHHHHHHhhc-cccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEe
Confidence 3566777887754 3578899999999999999999989999999999999996
No 23
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=94.47 E-value=0.081 Score=50.95 Aligned_cols=64 Identities=9% Similarity=0.031 Sum_probs=47.7
Q ss_pred hHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecccCcceeeeeecCCceEEE
Q 024793 43 PLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLH 112 (262)
Q Consensus 43 PL~i~LRdrLg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~mDVIsI~~t~e~fR~l~d~kgrf~~~ 112 (262)
+++=+|.. .|+|.+..|||+.+.+|-|.|||.+++|+.+.+...|.+ +..|-++--.|.+|..+
T Consensus 357 ~~~~ll~~-~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~~-----~~~~~~l~~GKk~~~~v 420 (432)
T 2jan_A 357 GIVDLLVA-SGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSDFL-----HGRWLVLRRGKRSIAGV 420 (432)
T ss_dssp SHHHHHHH-HTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGGSB-----TTTEEEEESSSSCEEEE
T ss_pred hHHHHHHH-hCCcccHHHHHHHHHhCCEEECCEEccChhcccChhhcc-----CCcEEEEEeCCeeEEEE
Confidence 56667765 799999999999999999999999999999888665443 22444444444444443
No 24
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=94.43 E-value=0.07 Score=39.45 Aligned_cols=47 Identities=30% Similarity=0.425 Sum_probs=36.3
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceE
Q 024793 175 FDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNV 225 (262)
Q Consensus 175 f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~g~~F~T~~~~v 225 (262)
|++|+.+-|++|+|.|..|.|..++.. -++.+-|...++++-...++
T Consensus 18 F~~GDHVkVi~G~~~getGlVV~v~~d----~v~v~SD~t~~Ei~V~~~dL 64 (69)
T 2do3_A 18 FKMGDHVKVIAGRFEGDTGLIVRVEEN----FVILFSDLTMHELKVLPRDL 64 (69)
T ss_dssp CCTTCEEEESSSTTTTCEEEEEEECSS----CEEEEESSSCSEEEECTTSE
T ss_pred ccCCCeEEEeccEEcCceEEEEEEeCC----EEEEEeCCCCCEEEEEhHHh
Confidence 778999999999999999999999621 25556777777776555443
No 25
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=94.16 E-value=0.095 Score=42.55 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=32.1
Q ss_pred CCeEEEecCCCeeeeEEEeeCCcEEEEECCCcceeEEEEEeEEE
Q 024793 157 NDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREK 200 (262)
Q Consensus 157 ~Dtv~i~l~~~kI~~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~ 200 (262)
++.| .+....+--.+| +.|+.+||..|.+.|..|++.++..
T Consensus 56 g~~v--~v~q~~LETViP-~~g~~V~Iv~G~~rG~~g~L~~id~ 96 (127)
T 2ckk_A 56 GDKL--KLDQTHLETVIP-APGKRILVLNGGYRGNEGTLESINE 96 (127)
T ss_dssp CCEE--EEEGGGEEECCC-CTTCEEEECSSTTTTCEEEEEEEEG
T ss_pred CCEE--EEchHHcEEecC-CCCCEEEEEecccCCcEEEEEEEeC
Confidence 4554 454445555666 8999999999999999999999954
No 26
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=93.73 E-value=0.073 Score=51.15 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=39.2
Q ss_pred cchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCc
Q 024793 41 CLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGF 86 (262)
Q Consensus 41 siPL~i~LRdrLg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~ 86 (262)
.++++=+|.. .|+|.+..|||+.+.+|-|.|||.+++|+.+.+..
T Consensus 368 ~~~~~~~l~~-~~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~~ 412 (432)
T 1h3f_A 368 RIWVARLFTL-AGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDL 412 (432)
T ss_dssp EEEHHHHHHH-TTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEEC
T ss_pred cCcHHHHHHH-hCCcccHHHHHHHHHhCCEEECCEEecCccceecC
Confidence 4567777775 79999999999999999999999999999976643
No 27
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=93.11 E-value=0.078 Score=45.07 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=50.3
Q ss_pred hHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeE-E----------ecc---cCcceeeeeecCCc
Q 024793 43 PLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVV-S----------IPK---TNENFRLLYDTKGR 108 (262)
Q Consensus 43 PL~i~LRdrLg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~mDVI-s----------I~~---t~e~fR~l~d~kgr 108 (262)
+|+=+|- ..|+|.+.+|||+++.+|-|+|||.++.+..-+.++||.- + +.. .+..|-+|--.|.+
T Consensus 51 ~ivdlLv-~aGLa~SKsEARRlI~qGGv~VNg~kv~~~~~~~~i~~~~~~~tpi~d~~~~it~~dli~g~~liLRkGKK~ 129 (164)
T 2ktl_A 51 TFSKVLW-SAGLVASKSEGQRIINNNGAYVGSRPGVKKNEPGGGMPDDLTFTPIKTWNASKTQEFIIDGDLLILKLGKWK 129 (164)
T ss_dssp SHHHHHH-HHTSCSTHHHHHHHHHHTCEEEEECCSCCCCCCCSSSCSSSCCCCCCCCSHHHHHHHTTCSSCEEEEESSSC
T ss_pred cHHHHHH-HhCcccCHHHHHHHHHhCCEEECCEecccccccccccccccccccccccccccCHHHhcCCcEEEEEcCCee
Confidence 3444454 4699999999999999999999998887743355666541 1 111 24556666666666
Q ss_pred eEEEEeChhh
Q 024793 109 FRLHSLRDEE 118 (262)
Q Consensus 109 f~~~~I~~ee 118 (262)
|.++.+..+|
T Consensus 130 ~~lI~~~~de 139 (164)
T 2ktl_A 130 MKLVSIVSDE 139 (164)
T ss_dssp EEEEECCCHH
T ss_pred EEEEEEeccH
Confidence 6666554444
No 28
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=92.11 E-value=0.027 Score=53.88 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=0.0
Q ss_pred cchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeE
Q 024793 41 CLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVV 90 (262)
Q Consensus 41 siPL~i~LRdrLg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~mDVI 90 (262)
.++|.=+|.. .|+|.+..|||+.+.+|-|+|||.+++|+.+.+...|.+
T Consensus 352 ~i~l~~lL~~-agl~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~dl~ 400 (420)
T 1jil_A 352 TTNIVEVLIE-TGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI 400 (420)
T ss_dssp --------------------------------------------------
T ss_pred cccHHHHHHH-cCCccCHHHHHHHHHhCCEEECCEEecccccccCccccc
Confidence 4567777775 799999999999999999999999999999887766654
No 29
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=89.90 E-value=0.059 Score=51.62 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=0.0
Q ss_pred chHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCccee
Q 024793 42 LPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDV 89 (262)
Q Consensus 42 iPL~i~LRdrLg~A~t~rEar~Il~~g~V~VdGkvr~d~~ypVG~mDV 89 (262)
++++=+|.. .|+|.+..|||+.+.+|-|+|||.+++|+.+.+...|.
T Consensus 352 ~~~~~~l~~-~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~ 398 (419)
T 2ts1_A 352 VPLVELLVS-AGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHR 398 (419)
T ss_dssp ------------------------------------------------
T ss_pred ccHHHHHHH-hCCCCCHHHHHHHHHhCCEEECCEEecCcccccChhhc
Confidence 456666764 79999999999999999999999999999987765444
No 30
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=85.83 E-value=1.3 Score=35.77 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=40.3
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcC-----CCCeEeEe--eceEEEEc
Q 024793 171 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDA-----LGHEFATR--LGNVFTIG 229 (262)
Q Consensus 171 ~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~-----~g~~F~T~--~~~vfvIG 229 (262)
..+++..|+.++|+.|+.-|..|+|..+.. ....|+++.- +|.+++-. .|||+++-
T Consensus 39 r~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~---k~~~V~VEgvn~kK~~Gg~~e~pIh~SNV~i~~ 101 (120)
T 1vq8_T 39 RNVRVNAGDTVEVLRGDFAGEEGEVINVDL---DKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTD 101 (120)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEET---TTTEEEETTCEEECSSSCEEECCBCGGGEEEEE
T ss_pred ccccccCCCEEEEEecCCCCCEEEEEEEEC---CCCEEEEeCeEeEcCCCCEEEeeechHHEEEEe
Confidence 457888999999999999999999999853 2346666655 34444432 46777665
No 31
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=81.56 E-value=3.6 Score=33.53 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=38.6
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc-----CCCCeEe--EeeceEEEEc
Q 024793 171 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEFA--TRLGNVFTIG 229 (262)
Q Consensus 171 ~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d-----~~g~~F~--T~~~~vfvIG 229 (262)
-.++...|+.++|+.|+.-|..|+|..+... ...|++|. .+|.+.+ .-.|||+++-
T Consensus 46 rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~k---k~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~ 108 (127)
T 3u5e_Y 46 KALPIRRDDEVLVVRGSKKGQEGKISSVYRL---KFAVQVDKVTKEKVNGASVPINLHPSKLVITK 108 (127)
T ss_dssp CEEECCTTCEEEECSSTTTTCEEEEEEEEGG---GTEEEEETCEEECSSSCEEECCBCGGGEEEEE
T ss_pred CcccccCCCEEEEeecCCCCccceEEEEECC---CCEEEEeCeEEECCCCcEEEcccchHHEEEEc
Confidence 3578888999999999999999999998543 23555554 4554333 2335555544
No 32
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=80.83 E-value=3.7 Score=28.05 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=25.5
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEEE
Q 024793 173 IKFDVGNIVMVTGGRNRGRVGIIKNREK 200 (262)
Q Consensus 173 i~f~~G~~~~v~gG~n~G~vG~I~~i~~ 200 (262)
+.|++|+.+.|+.|.-.|..|+|.++..
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~ 30 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINP 30 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEET
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcC
Confidence 4689999999999999999999999853
No 33
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=79.28 E-value=2.2 Score=34.46 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=30.3
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEE
Q 024793 171 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQ 211 (262)
Q Consensus 171 ~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~ 211 (262)
..+++..|+.++|+.|+.-|..|+|..+... ...|+++
T Consensus 42 r~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k---~~~V~VE 79 (121)
T 3j21_U 42 RNLPVRVGDKVRIMRGDYKGHEGKVVEVDLK---RYRIYVE 79 (121)
T ss_dssp SEEECCSSSEEEECSSSCSSEEEEEEEEETT---TTEEEET
T ss_pred cccccccCCEEEEeecCCCCcEeEEEEEEec---CCEEEEe
Confidence 3578889999999999999999999998532 2355554
No 34
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=69.53 E-value=5.7 Score=32.65 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=30.2
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc
Q 024793 171 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 212 (262)
Q Consensus 171 ~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d 212 (262)
-.++...|+.++|+.|+.-|..|+|..+.. ....|++|.
T Consensus 45 Rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~---kk~~V~VEg 83 (135)
T 4a17_S 45 RSMPVRKDDEVLIVRGKFKGNKGKVTQVYR---KKWAIHVEK 83 (135)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEET---TTTEEEETT
T ss_pred CcccccCCCEEEEeecCCCCceeeEEEEEc---CCCEEEEeC
Confidence 356788899999999999999999999853 223455543
No 35
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=69.00 E-value=4.9 Score=33.62 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=45.8
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc-----CCCCeEe--EeeceEEEEccCCCceEecCCCCc
Q 024793 171 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEFA--TRLGNVFTIGKGSKPWVSLPKGKG 243 (262)
Q Consensus 171 ~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d-----~~g~~F~--T~~~~vfvIG~~~~p~islp~~~g 243 (262)
-.+++..|+.++|+.|+.-|..|+|..+... ...|+|+. .+|.+.+ .-.|||+++-- --++
T Consensus 45 Rs~~IkKGD~V~Vi~GkdKGk~GkVl~V~~k---k~~V~VEGVN~~K~~G~~~eapIh~SNV~i~~~--------k~dk- 112 (150)
T 3iz5_Y 45 RSIPIRKDDEVQVVRGSYKGREGKVVQVYRR---RWVIHVERITREKVNGSTVNVGIHPSKVVVTKL--------KLDK- 112 (150)
T ss_dssp SEEECCSSSEEEECSSTTTTCEEEEEEEETT---TTEEEETTCEEECTTSCEEECCBCGGGEEEEEC--------CCCS-
T ss_pred cccccCCCCEEEEeecCCCCccceEEEEEcC---CCEEEEeCcEEEeCCCCEEecccchHHEEEEcc--------cCCh-
Confidence 3578888999999999999999999998532 23454443 5564433 22356665542 1122
Q ss_pred eeeehHHHHHH
Q 024793 244 IKLSIIEEARK 254 (262)
Q Consensus 244 i~~~~~~~~~~ 254 (262)
-|..++|.+.+
T Consensus 113 ~R~~~lerk~~ 123 (150)
T 3iz5_Y 113 DRKAILDRKAS 123 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhccchh
Confidence 55666666543
No 36
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=68.59 E-value=4.3 Score=31.73 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=27.1
Q ss_pred EeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc
Q 024793 174 KFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 212 (262)
Q Consensus 174 ~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d 212 (262)
++..|+.++|+.|+.-|..|+|.++... +.|++++
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~----~~ViVeG 37 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSS----GKVIVEG 37 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETT----TEEEETT
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeC----CEEEEeC
Confidence 4567999999999999999999998542 4455543
No 37
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=66.83 E-value=3.3 Score=32.87 Aligned_cols=28 Identities=32% Similarity=0.624 Sum_probs=24.9
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEEE
Q 024793 173 IKFDVGNIVMVTGGRNRGRVGIIKNREK 200 (262)
Q Consensus 173 i~f~~G~~~~v~gG~n~G~vG~I~~i~~ 200 (262)
+++..|+.+.|+.|+.-|..|+|.++..
T Consensus 5 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~ 32 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVLP 32 (110)
T ss_dssp CSCCTTSEEEECSSTTTTCEEEEEEEEG
T ss_pred cccCCCCEEEEeEcCCCCeEeEEEEEEC
Confidence 4677899999999999999999999864
No 38
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=66.80 E-value=6.6 Score=30.31 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.9
Q ss_pred CcEEEEECCCcceeEEEEEeEEE
Q 024793 178 GNIVMVTGGRNRGRVGIIKNREK 200 (262)
Q Consensus 178 G~~~~v~gG~n~G~vG~I~~i~~ 200 (262)
|+.++|+.|+.-|..|+|.++..
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~ 23 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIR 23 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEC
Confidence 78899999999999999999854
No 39
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=65.84 E-value=4.4 Score=32.26 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=29.0
Q ss_pred EeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc
Q 024793 174 KFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 212 (262)
Q Consensus 174 ~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d 212 (262)
++..|+.+.|+.|+.-|..|+|.++.. ..+.|++++
T Consensus 15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~---~~~~V~VEG 50 (115)
T 2zjr_R 15 HFKKGDTVIVLSGKHKGQTGKVLLALP---RDQKVVVEG 50 (115)
T ss_dssp SSCTTSEEECCSSSSTTCEEEEEEEET---TTTEEEESS
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEC---CCCEEEEeC
Confidence 678899999999999999999999853 234555654
No 40
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=65.77 E-value=4.7 Score=32.79 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=24.5
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEe
Q 024793 175 FDVGNIVMVTGGRNRGRVGIIKNREKH 201 (262)
Q Consensus 175 f~~G~~~~v~gG~n~G~vG~I~~i~~~ 201 (262)
.|+|-.|++..|.++|+.++|++|..+
T Consensus 7 vevGRVv~i~~G~~aGklavIVdIID~ 33 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKLAVIVNIINQ 33 (126)
T ss_dssp EETTEEEEECSSTTTTEEEEEEEEETT
T ss_pred eecceEEEEccCCccCCEEEEEEEecC
Confidence 478999999999999999999999653
No 41
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=63.04 E-value=4 Score=33.91 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=37.8
Q ss_pred EEEeeCCcEEEEECCCcceeE-EEEEeEEEecCCccEEEEEcCC-----CCeEeE--eeceEEEEc
Q 024793 172 FIKFDVGNIVMVTGGRNRGRV-GIIKNREKHKGSFETIHIQDAL-----GHEFAT--RLGNVFTIG 229 (262)
Q Consensus 172 ~i~f~~G~~~~v~gG~n~G~v-G~I~~i~~~~~s~~~v~i~d~~-----g~~F~T--~~~~vfvIG 229 (262)
.+++..|+.+.|+.|+.-|.. |+|..+.. ....|++++-+ |.+.+- -.+||+++-
T Consensus 46 ~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~---k~~~V~VEgvn~~Kp~G~~~e~PIh~SNV~lv~ 108 (145)
T 2zkr_t 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVYR---KKYVIYIERVQREKANGTTVHVGIHPSKVVITR 108 (145)
T ss_dssp CCBCCTTCEEEECSSTTTTCCSEEEEEEET---TTTEEEETTCEEECSSCCEEECCBCGGGEEECC
T ss_pred ccccCCCCEEEEeecCCCCcceeEEEEEEC---CCCEEEEeeeEeEcCCCceEEeccCHHHEEEEc
Confidence 367888999999999999999 99999853 23456665543 433322 246666654
No 42
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=60.68 E-value=19 Score=27.95 Aligned_cols=47 Identities=11% Similarity=0.149 Sum_probs=28.3
Q ss_pred eEEEccCCeeeecC-----C-CCcccCCeEEEecCCCeeeeEEEeeCCcEEEE
Q 024793 137 PYINTYDGRTIRYP-----D-PLIKANDTIKLDLEENKITDFIKFDVGNIVMV 183 (262)
Q Consensus 137 ~ql~~hDGrni~~~-----d-~~ik~~Dtv~i~l~~~kI~~~i~f~~G~~~~v 183 (262)
..+.+..|+++.++ | ..+++|++|-++-.+..|++.+|++.+..+.+
T Consensus 52 ~iVk~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~~ 104 (109)
T 2wg5_A 52 VVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYG 104 (109)
T ss_dssp EEEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC---------
T ss_pred EEEEeCCCCEEEEEcccccCHHHCCCCCEEEECCcceEeEEeCCCCcCccchh
Confidence 33444556664322 3 46999999999999999999999999876643
No 43
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.76 E-value=4.3 Score=28.30 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=25.0
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEE
Q 024793 173 IKFDVGNIVMVTGGRNRGRVGIIKNRE 199 (262)
Q Consensus 173 i~f~~G~~~~v~gG~n~G~vG~I~~i~ 199 (262)
+.|++|+.+-|+.|.=.|..|+|.++.
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~evd 32 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILSVD 32 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECCCB
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEEEe
Confidence 468999999999999999999999985
No 44
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=56.17 E-value=6 Score=32.43 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=23.8
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEE
Q 024793 175 FDVGNIVMVTGGRNRGRVGIIKNREK 200 (262)
Q Consensus 175 f~~G~~~~v~gG~n~G~vG~I~~i~~ 200 (262)
.|+|-+|++..|++.|+..+|.+|..
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD 32 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVD 32 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECS
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcC
Confidence 47899999999999999999999954
No 45
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=53.09 E-value=40 Score=26.43 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=51.2
Q ss_pred ceEEECCEEecccCCCCCcceeEEecccCcceeeee-ecCCceEE-EEeChhhh------c---ceeEEEEeEEEeeCCc
Q 024793 68 RHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLY-DTKGRFRL-HSLRDEEA------K---FKLCKVRSVQFGQKGI 136 (262)
Q Consensus 68 g~V~VdGkvr~d~~ypVG~mDVIsI~~t~e~fR~l~-d~kgrf~~-~~I~~eea------~---~KLcKV~~k~~~~~g~ 136 (262)
+.+.+||..++-.+ =++=|.++.+...++.... |..|.+.. .|.+.+++ . -.++||.+.-..-+|.
T Consensus 27 ~~f~i~g~~i~~V~---iVG~V~~~~~~~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f~g~ 103 (136)
T 4gop_B 27 AEFILDGAELGQLT---FVAVVRNISRNATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSFQNR 103 (136)
T ss_dssp CCCBSSSSBCCEEE---EEEEEEEEEECSSEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEETTE
T ss_pred CcEEECCEEEEEEE---EEEEEEEEEecCCeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEeCCE
Confidence 67888887776665 2334677776666666555 88887744 46654432 1 3789999988888999
Q ss_pred eEEEccCCeee
Q 024793 137 PYINTYDGRTI 147 (262)
Q Consensus 137 ~ql~~hDGrni 147 (262)
+||+.+.=|.+
T Consensus 104 ~qi~~~~ir~v 114 (136)
T 4gop_B 104 RSISSGHMRPV 114 (136)
T ss_dssp EEEEESEEEEC
T ss_pred EEEEEEEEEEC
Confidence 99988644433
No 46
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=49.37 E-value=1e+02 Score=27.03 Aligned_cols=78 Identities=8% Similarity=-0.044 Sum_probs=54.8
Q ss_pred CceEEECCEEecccCCCCCcceeEEecccCcceeeee-ecCC-ce-EEEEeChhh-----h---cceeEEEEeEEEeeCC
Q 024793 67 QRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLY-DTKG-RF-RLHSLRDEE-----A---KFKLCKVRSVQFGQKG 135 (262)
Q Consensus 67 ~g~V~VdGkvr~d~~ypVG~mDVIsI~~t~e~fR~l~-d~kg-rf-~~~~I~~ee-----a---~~KLcKV~~k~~~~~g 135 (262)
++.+.+||+.++-.+ -++=|.++.+...++.+.. |..| .+ +-.|.+.++ + .-.++||.+....-+|
T Consensus 61 d~~f~i~g~~i~~V~---ivG~V~~i~~~~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~g 137 (270)
T 2pi2_A 61 DEVFRIGNVEISQVT---IVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQN 137 (270)
T ss_dssp TTEEEETTEEESEEE---EEEEEEEEEECSSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEETT
T ss_pred CCcEEECCEEEEEEE---EEEEEEEEEeccceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecCC
Confidence 468999999887765 3444777777777777777 7677 55 556766543 1 2468999998888899
Q ss_pred ceEEEccCCeee
Q 024793 136 IPYINTYDGRTI 147 (262)
Q Consensus 136 ~~ql~~hDGrni 147 (262)
.+||+.+.=|.+
T Consensus 138 ~~qi~i~~ir~v 149 (270)
T 2pi2_A 138 KKSLVAFKIMPL 149 (270)
T ss_dssp EEEEEEEEEEEC
T ss_pred eeEEEEEEEEec
Confidence 999998754443
No 47
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=48.88 E-value=11 Score=31.30 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=24.1
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEe
Q 024793 175 FDVGNIVMVTGGRNRGRVGIIKNREKH 201 (262)
Q Consensus 175 f~~G~~~~v~gG~n~G~vG~I~~i~~~ 201 (262)
+++|-.|+|..|+.+|+-++|..+...
T Consensus 5 ~kpGrVvivl~Gr~aGkkaVIvk~iD~ 31 (144)
T 4a18_N 5 LKYGRVVILLQGRFAGKKAVIVKSSED 31 (144)
T ss_dssp CCTTEEEEECSSTTTTCEEEEEEEESS
T ss_pred ccCCeEEEEecCCcCCCEEEEEEecCC
Confidence 578999999999999999999988653
No 48
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.17 E-value=8.1 Score=28.96 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=23.3
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEE
Q 024793 175 FDVGNIVMVTGGRNRGRVGIIKNREK 200 (262)
Q Consensus 175 f~~G~~~~v~gG~n~G~vG~I~~i~~ 200 (262)
+++|.+|++..|+..|+..+|.++..
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~iiD 29 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDIID 29 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEECS
T ss_pred cccCEEEEEeecCCCCCEEEEEEEcC
Confidence 67899999999999999999998743
No 49
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=48.08 E-value=9.5 Score=31.40 Aligned_cols=26 Identities=23% Similarity=0.543 Sum_probs=23.6
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEE
Q 024793 175 FDVGNIVMVTGGRNRGRVGIIKNREK 200 (262)
Q Consensus 175 f~~G~~~~v~gG~n~G~vG~I~~i~~ 200 (262)
.++|-+|++..|+..|+..+|.+|..
T Consensus 15 ve~GrVV~i~~Gr~aGk~avIV~iiD 40 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKLAAIVEIID 40 (138)
T ss_dssp SSTTEEEECCSCSSSCCEEEEEEECS
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEec
Confidence 36899999999999999999999954
No 50
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=47.10 E-value=10 Score=29.00 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.9
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEE
Q 024793 175 FDVGNIVMVTGGRNRGRVGIIKNRE 199 (262)
Q Consensus 175 f~~G~~~~v~gG~n~G~vG~I~~i~ 199 (262)
+++|-.|++..|++.|+..+|.++.
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~i 28 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDII 28 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEEC
T ss_pred cccCEEEEEeecCCCCCEEEEEEEe
Confidence 5789999999999999999999884
No 51
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=46.20 E-value=45 Score=23.25 Aligned_cols=23 Identities=17% Similarity=0.047 Sum_probs=19.7
Q ss_pred eEEECCEEecccCCCCCcceeEEe
Q 024793 69 HVLVDGKVRTDKTYPAGFMDVVSI 92 (262)
Q Consensus 69 ~V~VdGkvr~d~~ypVG~mDVIsI 92 (262)
.|.|||+.+. ...++.=.|.|.|
T Consensus 52 ~v~vN~~~v~-~~~~l~~gD~V~i 74 (81)
T 1fm0_D 52 LAAVNQTLVS-FDHPLTDGDEVAF 74 (81)
T ss_dssp EEEETTEECC-TTCBCCTTCEEEE
T ss_pred EEEECCEECC-CCCCCCCCCEEEE
Confidence 5999999985 5788999998887
No 52
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=41.97 E-value=40 Score=30.28 Aligned_cols=51 Identities=14% Similarity=0.233 Sum_probs=36.0
Q ss_pred CCcccCCeEEEecCCCeeeeEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCe
Q 024793 152 PLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHE 217 (262)
Q Consensus 152 ~~ik~~Dtv~i~l~~~kI~~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~g~~ 217 (262)
..+++|++|.++ ++..|++..+|+. +|.+-++.|+- ...+.+.+.+..|++
T Consensus 133 e~LkPG~rVaLN-eSlaVVevLp~E~-----------~Gev~tv~E~l---~d~~R~lV~~~~~ee 183 (251)
T 3m9b_A 133 ASLKKGQTVRLN-EALTVVEAGTFEA-----------VGEISTLREIL---ADGHRALVVGHADEE 183 (251)
T ss_dssp TTSCSSCEEEEC-TTCCBCCCCCCCC-----------CSEEEEEEEEC---TTSSEEEEECSSSCE
T ss_pred HHCCCCCEEEeC-CccEEEEecCCCC-----------cccEEEEEEEe---cCCCEEEEecCCCce
Confidence 379999999996 7999999999986 57777777763 112234445555554
No 53
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=40.66 E-value=41 Score=23.52 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=23.8
Q ss_pred hCceEEECCEEecccCCCCCcceeEEec
Q 024793 66 MQRHVLVDGKVRTDKTYPAGFMDVVSIP 93 (262)
Q Consensus 66 ~~g~V~VdGkvr~d~~ypVG~mDVIsI~ 93 (262)
..-.|.|||..+.+...++.-.|.|+|=
T Consensus 41 ~~~~vavN~~~v~~~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 41 GVCAIALNDHLIDNLNTPLKDGDVISLL 68 (74)
T ss_dssp TTCEEEESSSEECCTTCCCCTTCEEEEE
T ss_pred hccEEEECCEEcCCCCcCCCCCCEEEEE
Confidence 4557999999977889999999999873
No 54
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=40.01 E-value=15 Score=29.55 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=26.3
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEEEe
Q 024793 173 IKFDVGNIVMVTGGRNRGRVGIIKNREKH 201 (262)
Q Consensus 173 i~f~~G~~~~v~gG~n~G~vG~I~~i~~~ 201 (262)
..|++|+.+-|+.|.-.|..|+|.++...
T Consensus 90 ~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~ 118 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGPFKGQKAKVVKIDES 118 (152)
T ss_dssp TTCCTTCEEEECSSTTTTCEEEEEEEETT
T ss_pred ccCCCCCEEEEeeecCCCCEEEEEEEeCC
Confidence 46899999999999999999999999643
No 55
>2laq_A Accessory gland-specific peptide 70A; hydroxiproline rich, signaling protein; HET: HYP; NMR {Drosophila melanogaster}
Probab=39.89 E-value=15 Score=23.51 Aligned_cols=19 Identities=21% Similarity=0.576 Sum_probs=13.6
Q ss_pred ceecccccceeccCCCCCCCCC
Q 024793 17 HWMLDKLGGAFAPKPSSGPHKS 38 (262)
Q Consensus 17 ~W~i~kk~~~~a~kpspGPH~~ 38 (262)
+|++.|+...| |-|||.+.
T Consensus 2 ~wp~~~~~~~~---~ip~p~~r 20 (36)
T 2laq_A 2 EWPWNRKPTKF---PIPSPNPR 20 (36)
T ss_dssp CSCCCSCCCSC---SSSSCSTT
T ss_pred CCcccCcCCCC---cCCCCcch
Confidence 69999999888 44455443
No 56
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=38.66 E-value=1.3e+02 Score=23.16 Aligned_cols=78 Identities=8% Similarity=-0.025 Sum_probs=52.2
Q ss_pred CceEEECCEEecccCCCCCcceeEEecccCcceeeee-ecCC-ceE-EEEeChhhh-----c---ceeEEEEeEEEeeCC
Q 024793 67 QRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLY-DTKG-RFR-LHSLRDEEA-----K---FKLCKVRSVQFGQKG 135 (262)
Q Consensus 67 ~g~V~VdGkvr~d~~ypVG~mDVIsI~~t~e~fR~l~-d~kg-rf~-~~~I~~eea-----~---~KLcKV~~k~~~~~g 135 (262)
++.+.+||..++-.++ ++=|.++.+...++.... |..| .+. -.|.+.+++ . -..+||.+.-..-+|
T Consensus 21 ~~~f~i~g~~i~~V~i---VG~V~~~~~~~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f~g 97 (132)
T 3kdf_D 21 DEVFRIGNVEISQVTI---VGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQN 97 (132)
T ss_dssp SSCEEETTEECCEEEE---EEEEEEEEECSSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEEETT
T ss_pred CCcEEECCEEEEEEEE---EEEEEEEEEcCCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEeECC
Confidence 5678999999887763 333677777666666665 8888 664 456655432 2 368999998888899
Q ss_pred ceEEEccCCeee
Q 024793 136 IPYINTYDGRTI 147 (262)
Q Consensus 136 ~~ql~~hDGrni 147 (262)
..||+.+.=|.+
T Consensus 98 ~~qi~~~~ir~v 109 (132)
T 3kdf_D 98 KKSLVAFKIMPL 109 (132)
T ss_dssp EEEEEEEEEEEC
T ss_pred EEEEEEEEEEEc
Confidence 999988644433
No 57
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=35.40 E-value=43 Score=24.91 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=21.3
Q ss_pred eEEECCEEec---ccCCCCCcceeEEec
Q 024793 69 HVLVDGKVRT---DKTYPAGFMDVVSIP 93 (262)
Q Consensus 69 ~V~VdGkvr~---d~~ypVG~mDVIsI~ 93 (262)
.|.|||+.+. +..+++.=.|.|+|=
T Consensus 66 ~v~VNg~~v~~~~~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 66 NILINGNNIRHLEGLETLLKDSDEIGIL 93 (99)
T ss_dssp EEEETTSCGGGTTSTTSCCCTTEEEEEE
T ss_pred EEEECCEEccccCCCCCCCCCCCEEEEE
Confidence 6999999885 678899999999873
No 58
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=35.21 E-value=55 Score=26.81 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=26.2
Q ss_pred EEEeeCCcEEEEECCCcceeEEEEEeEEE
Q 024793 172 FIKFDVGNIVMVTGGRNRGRVGIIKNREK 200 (262)
Q Consensus 172 ~i~f~~G~~~~v~gG~n~G~vG~I~~i~~ 200 (262)
...|++|+.+-|+.|.=.|..|+|.++..
T Consensus 125 ~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~ 153 (181)
T 2jvv_A 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDY 153 (181)
T ss_dssp CCCCCTTEEEEECSSTTTTEEEEEEEEET
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeC
Confidence 35789999999999999999999999864
No 59
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=34.11 E-value=50 Score=25.55 Aligned_cols=27 Identities=11% Similarity=-0.039 Sum_probs=19.2
Q ss_pred CccEEEEEcCCCCeEeEeeceEEEEcc
Q 024793 204 SFETIHIQDALGHEFATRLGNVFTIGK 230 (262)
Q Consensus 204 s~~~v~i~d~~g~~F~T~~~~vfvIG~ 230 (262)
..+++.|+..+|.+..+-.+.-|....
T Consensus 53 ~~~~~~i~t~~G~~i~~T~~H~~~t~~ 79 (139)
T 2in0_A 53 TRDVIGLRIAGGAILWATPDHKVLTEY 79 (139)
T ss_dssp EEEEEEEEETTSCEEEECTTCEEEETT
T ss_pred CcEEEEEEeCCCCEEEecCCCeEEecC
Confidence 345777877888887777777777543
No 60
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=33.40 E-value=62 Score=23.13 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=20.7
Q ss_pred ceEEECCEEecccCCCCCcceeEEe
Q 024793 68 RHVLVDGKVRTDKTYPAGFMDVVSI 92 (262)
Q Consensus 68 g~V~VdGkvr~d~~ypVG~mDVIsI 92 (262)
-.|.|||+.+.. .+++.=.|.|.|
T Consensus 59 ~~v~VN~~~v~~-~~~l~~gDeV~i 82 (89)
T 3po0_A 59 INVLRNGEAAAL-GEATAAGDELAL 82 (89)
T ss_dssp SEEEETTEECCT-TSBCCTTCEEEE
T ss_pred EEEEECCEECCC-CcccCCCCEEEE
Confidence 479999999975 789999999887
No 61
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=30.62 E-value=87 Score=22.89 Aligned_cols=75 Identities=9% Similarity=0.152 Sum_probs=48.3
Q ss_pred EEEEeEEEeeCCceEEEccCCeeeecCCCCcccCCeEEEecCCCeeeeEEEeeCCcEEEEECCCcceeEEEEEeEEEecC
Q 024793 124 CKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKG 203 (262)
Q Consensus 124 cKV~~k~~~~~g~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~ 203 (262)
+||...+.-+|+..-+..|..+...+. =+.-++.+.+++++. ..+.+.+|...++--|. .+.-...|
T Consensus 17 ~rV~r~~i~PG~~~~~H~H~~~~e~~~----v~~G~~~v~~~d~~~-~~~~l~~G~~~~ip~G~--------~H~~~N~g 83 (98)
T 3lag_A 17 VRVTEWRLPPGSATGHHTHGMDYVVVP----MADGEMTIVAPDGTR-SLAQLKTGRSYARKAGV--------QHDVRNES 83 (98)
T ss_dssp EEEEEEEECTTEECCSEECCSCEEEEE----SSCBC-CEECTTSCE-ECCCBCTTCCEEECTTC--------EEEEBCCS
T ss_pred EEEEEEEECCCCccCcEECCCcEEEEE----EeccEEEEEeCCCce-EEEEecCCcEEEEcCCC--------cEECEECC
Confidence 778888889999999999998876542 223455566665542 34467788888886663 22333557
Q ss_pred CccEEEEE
Q 024793 204 SFETIHIQ 211 (262)
Q Consensus 204 s~~~v~i~ 211 (262)
..+++.|+
T Consensus 84 ~~pl~~Ie 91 (98)
T 3lag_A 84 TAEIVFLE 91 (98)
T ss_dssp SSCEEEEE
T ss_pred CCeEEEEE
Confidence 77755543
No 62
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=29.17 E-value=23 Score=29.50 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=39.3
Q ss_pred ccchHHHHHHhhhccccCHHHHHHHHhCc-----eEEECCEEecccCCCCCcc---eeEEecc
Q 024793 40 ECLPLILVLRNRLKYALTYREVIAILMQR-----HVLVDGKVRTDKTYPAGFM---DVVSIPK 94 (262)
Q Consensus 40 ~siPL~i~LRdrLg~A~t~rEar~Il~~g-----~V~VdGkvr~d~~ypVG~m---DVIsI~~ 94 (262)
...+|+=+||+.|++-.+ |.=+.+| .|+|||+.+..-..|+.-. +|++|.-
T Consensus 21 p~~tLLd~LR~~lgltgt----k~gC~~G~CGACtV~vdG~~v~sC~~~~~~~~G~~I~TiEg 79 (160)
T 3hrd_D 21 PNKRLLDLLREDFGLTSV----KEGCSEGECGACTVIFNGDPVTTCCMLAGQADESTIITLEG 79 (160)
T ss_dssp SSSBHHHHHHTTSCCTTS----CCSSSSSSSCTTEEEETTEEEEGGGSBGGGGTTEEEECGGG
T ss_pred CCCCHHHHHHHhcCCCcc----ccccCCCCCCCCEEEECCEEEEchhhhhhhhCCCceEEeCC
Confidence 367899999999887444 3336666 7999999999999998753 6777754
No 63
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=26.12 E-value=1.6e+02 Score=25.83 Aligned_cols=60 Identities=13% Similarity=0.268 Sum_probs=38.2
Q ss_pred EEEEeChhhhcceeEEEEeEEEeeCCce-----EEEccCCeeeecCCCCcccCCeEEEecCCCeeeeEEEee
Q 024793 110 RLHSLRDEEAKFKLCKVRSVQFGQKGIP-----YINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFD 176 (262)
Q Consensus 110 ~~~~I~~eea~~KLcKV~~k~~~~~g~~-----ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~~~i~f~ 176 (262)
.++.|+.+ .++..+ .+.+..+|.| .+-+.||+= |. +....++..+||..+++++..|++.
T Consensus 127 ~l~viD~~--t~~v~~--~I~Vg~~~~p~~~~nele~~dg~l--yv-n~~~~~~V~vID~~tg~V~~~I~~~ 191 (266)
T 2iwa_A 127 ILYEIDPH--TFKLIK--KHNVKYNGHRVIRLNELEYINGEV--WA-NIWQTDCIARISAKDGTLLGWILLP 191 (266)
T ss_dssp EEEEECTT--TCCEEE--EEECEETTEECCCEEEEEEETTEE--EE-EETTSSEEEEEETTTCCEEEEEECH
T ss_pred eEEEEECC--CCcEEE--EEEECCCCcccccceeEEEECCEE--EE-ecCCCCeEEEEECCCCcEEEEEECC
Confidence 45567653 344433 3344445554 345568853 32 2356788999999999999999985
No 64
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=25.70 E-value=58 Score=23.76 Aligned_cols=43 Identities=26% Similarity=0.354 Sum_probs=32.0
Q ss_pred eeeeeecCCceEEEEeChhhhcceeEEEEeEEEeeCCceEEEccCCeeeecCCCCcc
Q 024793 99 FRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIK 155 (262)
Q Consensus 99 fR~l~d~kgrf~~~~I~~eea~~KLcKV~~k~~~~~g~~ql~~hDGrni~~~d~~ik 155 (262)
.|..-|..|.|.+ ||.| + -+++|+++|.--||..|-+|-....
T Consensus 5 ~RtWtDrtG~F~V------eA~f--l------g~~dgki~LhK~nGv~I~VP~~klS 47 (68)
T 2hbp_A 5 SRLWVDRSGTFKV------DAEF--I------GCAKGKIHLHKANGVKIAVAADKLS 47 (68)
T ss_dssp SEEEEBSSSCCEE------EEEE--E------EEETTEEEEECTTSCEEEEETTSBC
T ss_pred ccEEEcCCCCeEE------EEEE--E------EEeCCEEEEEecCCcEEEeEhHHcC
Confidence 4777788898876 6643 2 2458999999999999987754443
No 65
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=25.60 E-value=1.5e+02 Score=21.87 Aligned_cols=10 Identities=30% Similarity=0.481 Sum_probs=5.4
Q ss_pred EeeCCcEEEE
Q 024793 174 KFDVGNIVMV 183 (262)
Q Consensus 174 ~f~~G~~~~v 183 (262)
.|++|+.+.|
T Consensus 63 ~i~~Gdvv~i 72 (97)
T 3e0e_A 63 EVKKGDIAEV 72 (97)
T ss_dssp CCCTTCEEEE
T ss_pred ccCCCCEEEE
Confidence 4555555555
No 66
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=25.10 E-value=26 Score=25.36 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=22.2
Q ss_pred ccchHHHHHHhhhcccc-CHHHHHHHHhCceE
Q 024793 40 ECLPLILVLRNRLKYAL-TYREVIAILMQRHV 70 (262)
Q Consensus 40 ~siPL~i~LRdrLg~A~-t~rEar~Il~~g~V 70 (262)
|.+||.+++ |++|. +..||.+-+.+|.-
T Consensus 25 EmMpLMYVI---LK~A~~d~eeAsrrI~Eg~~ 53 (65)
T 1zv1_A 25 ELMPLMYVI---LKDADANIEEASRRIEEGQY 53 (65)
T ss_dssp GGHHHHHHH---HHHTTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHH---HhccCCCHHHHHHHHHHHHH
Confidence 789999886 77885 77888887777653
No 67
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=24.91 E-value=78 Score=22.38 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=21.7
Q ss_pred ceEEECCEEec---ccCCCCCcceeEEec
Q 024793 68 RHVLVDGKVRT---DKTYPAGFMDVVSIP 93 (262)
Q Consensus 68 g~V~VdGkvr~---d~~ypVG~mDVIsI~ 93 (262)
-.|.|||..+. ....++.=.|.|+|-
T Consensus 56 v~v~vN~~~v~~~~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 56 VIILVNGNNITSMKGLDTEIKDDDKIDLF 84 (90)
T ss_dssp CEEEESSSBGGGTCSSSCBCCTTCEEEEE
T ss_pred eEEEECCEEccccCCCCcCCCCCCEEEEe
Confidence 46999999987 478899999999873
No 68
>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa form; zymogen, NTN-hydrolase, penicillin biosynthesis; 1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A
Probab=23.49 E-value=1.5e+02 Score=26.27 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=25.8
Q ss_pred ccchHHHHHHhhhccccCHHHHHHHHhCc
Q 024793 40 ECLPLILVLRNRLKYALTYREVIAILMQR 68 (262)
Q Consensus 40 ~siPL~i~LRdrLg~A~t~rEar~Il~~g 68 (262)
..+|...++|..|. +.|.+||.+++.+-
T Consensus 177 ~g~~~~~~~r~vL~-~~tv~eav~~l~~~ 204 (357)
T 2x1d_A 177 TGVPSHIALRIALE-STSPSQAYDRIVEQ 204 (357)
T ss_dssp TSBCHHHHHHHHHT-CSSHHHHHHHHHHT
T ss_pred CCccHhHHHHHHhc-CCCHHHHHHHHHHh
Confidence 57999999999999 99999999999853
No 69
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=23.43 E-value=48 Score=24.89 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=13.3
Q ss_pred eecCCCCcccCCeEEEe
Q 024793 147 IRYPDPLIKANDTIKLD 163 (262)
Q Consensus 147 i~~~d~~ik~~Dtv~i~ 163 (262)
||..|.+|++||.|.+.
T Consensus 31 iR~nDr~~~vGD~l~l~ 47 (83)
T 3iuw_A 31 IRKNDRNFQVGDILILE 47 (83)
T ss_dssp EEECCSCCCTTCEEEEE
T ss_pred EEecccCCCCCCEEEEE
Confidence 46677889999988763
No 70
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=23.12 E-value=88 Score=22.53 Aligned_cols=25 Identities=16% Similarity=0.009 Sum_probs=21.3
Q ss_pred eEEECCEEecc---cCCCCCcceeEEec
Q 024793 69 HVLVDGKVRTD---KTYPAGFMDVVSIP 93 (262)
Q Consensus 69 ~V~VdGkvr~d---~~ypVG~mDVIsI~ 93 (262)
.|.|||..+.. ...|+.=.|.|.|=
T Consensus 60 ~v~VN~~~v~~~~~~~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTIL 87 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred EEEECCEEccCcCCCCcCCCCCCEEEEE
Confidence 69999999885 67899999998873
No 71
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*
Probab=22.39 E-value=1.7e+02 Score=25.05 Aligned_cols=49 Identities=12% Similarity=-0.012 Sum_probs=35.6
Q ss_pred ccEEEEEcCCCCeEeEeeceEEEEccCCCceEecCCCCceeeehHHHHHHH
Q 024793 205 FETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 255 (262)
Q Consensus 205 ~~~v~i~d~~g~~F~T~~~~vfvIG~~~~p~islp~~~gi~~~~~~~~~~~ 255 (262)
++-+.+-|.+|..=|+..+|+|++= +.-|++-|.+.|+-..+..++-.+
T Consensus 159 ~de~l~ld~~G~v~E~s~sNif~v~--~g~l~TP~~~~~iL~GitR~~ll~ 207 (269)
T 1i2k_A 159 ADEALVLDSEGWVTECCAANLFWRK--GNVVYTPRLDQAGVNGIMRQFCIR 207 (269)
T ss_dssp CSEEEEEBTTSBEEECSSSEEEEEE--TTEEEEECCSSSSBCCHHHHHHHH
T ss_pred CCEEEEECCCCcEEEcCceEEEEEE--CCEEECCCCccCccCCHHHHHHHH
Confidence 3444466999999999999999984 445888888877766665544333
No 72
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila}
Probab=22.33 E-value=1.5e+02 Score=25.62 Aligned_cols=49 Identities=16% Similarity=0.105 Sum_probs=35.4
Q ss_pred ccEEEEEcCCCCeEeEeeceEEEEccCCCceEecCCCCceeeehHHHHHHH
Q 024793 205 FETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 255 (262)
Q Consensus 205 ~~~v~i~d~~g~~F~T~~~~vfvIG~~~~p~islp~~~gi~~~~~~~~~~~ 255 (262)
++-+.+.|.+|..=|+..+|+|++ + +.-|++-|.+.|+-..+..+.-.+
T Consensus 160 ~de~L~ld~~g~v~E~~~sNif~~-~-~g~l~TP~l~~~iL~GitR~~ll~ 208 (272)
T 3lul_A 160 ADDALFFNTENHVTETTCANLFLI-E-NNILYTPRVEDGILPGITRARLIS 208 (272)
T ss_dssp CSEEEEEETTSBEEEESSCEEEEE-E-TTEEEECCGGGTCCCCHHHHHHHH
T ss_pred CCEEEEECCCCeEEEcCCeEEEEE-E-CCEEECCCCccCcCcCHHHHHHHH
Confidence 444446689999999999999999 3 456888887777766665444333
No 73
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=21.84 E-value=12 Score=32.31 Aligned_cols=27 Identities=33% Similarity=0.613 Sum_probs=22.8
Q ss_pred EeeCCcEEEEECCCcceeEEEEEeEEE
Q 024793 174 KFDVGNIVMVTGGRNRGRVGIIKNREK 200 (262)
Q Consensus 174 ~f~~G~~~~v~gG~n~G~vG~I~~i~~ 200 (262)
++..|+.++|+.|+.-|..|+|.++..
T Consensus 68 kIkKGD~V~VIaGkDKGK~GkVl~V~~ 94 (191)
T 3bbo_W 68 HVKVGDTVKVISGGEKGKIGEISKIHK 94 (191)
T ss_dssp CSCCSSCEEECSSSSTTCCCSCCCCCS
T ss_pred eeecCCEEEEeecCCCCceEEEEEEEC
Confidence 367788899999999999999988853
No 74
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli}
Probab=21.59 E-value=1.6e+02 Score=23.07 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=17.5
Q ss_pred eEEEEEeEEEecCCcc-EEEEEcCCCC
Q 024793 191 RVGIIKNREKHKGSFE-TIHIQDALGH 216 (262)
Q Consensus 191 ~vG~I~~i~~~~~s~~-~v~i~d~~g~ 216 (262)
|||+|.+.+.||.+.. .+.-.|...+
T Consensus 15 rVG~I~~~e~hp~AdKL~~~~VD~G~~ 41 (118)
T 3ers_X 15 RVGKIVEVKRHENADKLYIVQVDVGQK 41 (118)
T ss_dssp EEEEEEEEECCTTCSSCEEEEEECSSS
T ss_pred EEEEEEEEEEcCCCCCcEEEEEEcCCc
Confidence 6899999999997755 3333354433
No 75
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=20.22 E-value=1.3e+02 Score=23.09 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=14.5
Q ss_pred eEEEEEeEEEecCCccE
Q 024793 191 RVGIIKNREKHKGSFET 207 (262)
Q Consensus 191 ~vG~I~~i~~~~~s~~~ 207 (262)
++|+|.+.+.||.+..+
T Consensus 14 ~VG~I~~~e~hp~adkL 30 (107)
T 1mkh_A 14 RVGKIIEVKDHPNADKL 30 (107)
T ss_dssp EEEEEEEEEECTTCSSC
T ss_pred EEEEEEEEEECCCCCcc
Confidence 68999999999987653
No 76
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=20.17 E-value=2.8e+02 Score=20.77 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=37.1
Q ss_pred ecCCceEEEEeChhh-hc---ceeEEEEe-EEEeeCCceEEEccCCeeeecCCCCcccC
Q 024793 104 DTKGRFRLHSLRDEE-AK---FKLCKVRS-VQFGQKGIPYINTYDGRTIRYPDPLIKAN 157 (262)
Q Consensus 104 d~kgrf~~~~I~~ee-a~---~KLcKV~~-k~~~~~g~~ql~~hDGrni~~~d~~ik~~ 157 (262)
|..|.+.+.-=+.+. .. =..++|++ +...-+|.+||++...++|...|+.+.+.
T Consensus 43 DeTG~I~~t~W~~~~~~~~~~G~~V~i~n~~v~~~~G~~~L~v~~~~~I~~~~~~~~~~ 101 (109)
T 2kbn_A 43 DETGIIKFTIWKNAELPLLEQGESYLLRSVVVGEYNDRFQVQVNKNSSIEKLSEPIEVG 101 (109)
T ss_dssp CTTCCEEEEEEGGGCCCCCCTTCEEEEEEEEEEEETTEEEEEECSSSEEEECSSCCCCC
T ss_pred CCCCeEEEEEECcccccccCCCCEEEEEEEEEEEECCEEEEEECCceEEEECCCccccc
Confidence 888887665444221 11 25788885 66677899999999999997556555443
Done!