BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024794
         (262 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5M469|KCY_STRT2 Cytidylate kinase OS=Streptococcus thermophilus (strain ATCC
           BAA-250 / LMG 18311) GN=cmk PE=3 SV=1
          Length = 226

 Score = 34.7 bits (78), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 2/46 (4%)

Query: 131 TTVAENLAQ-LMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDK 175
           +TVA+ +A+ L Y+ + TG M+++A Y L LQ  L +  +PE+LD+
Sbjct: 17  STVAKIIAKNLGYTYLDTGAMYRSATY-LALQNGLTEENVPEILDQ 61


>sp|Q5LZL6|KCY_STRT1 Cytidylate kinase OS=Streptococcus thermophilus (strain CNRZ 1066)
           GN=cmk PE=3 SV=1
          Length = 226

 Score = 34.7 bits (78), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 2/46 (4%)

Query: 131 TTVAENLAQ-LMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDK 175
           +TVA+ +A+ L Y+ + TG M+++A Y L LQ  L +  +PE+LD+
Sbjct: 17  STVAKIIAKNLGYTYLDTGAMYRSATY-LALQNGLTEENVPEILDQ 61


>sp|O34596|YOBK_BACSU Uncharacterized protein YobK OS=Bacillus subtilis (strain 168)
           GN=yobK PE=1 SV=1
          Length = 152

 Score = 33.9 bits (76), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 138 AQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPE---VLDKKDTPDYAPGTQKNVSGE-- 192
           A  ++ V++ GY F +A       +  E   L +   V++  D   Y   T K   GE  
Sbjct: 52  AGGLFGVLVLGYNFDHASVVNRTNEYKEHYGLTDGLVVIEDVDYFAYCLDTNKMKDGECP 111

Query: 193 VFRWNNVSGPEKIDAKKYIEFLEAEIEE 220
           V  W+ V G +   A  +IEF   +I+E
Sbjct: 112 VVEWDRVIGYQDTVADSFIEFFYNKIQE 139


>sp|P71694|Y1425_MYCTU Putative diacyglycerol O-acyltransferase Rv1425/MT1468
           OS=Mycobacterium tuberculosis GN=Rv1425 PE=2 SV=3
          Length = 459

 Score = 32.3 bits (72), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 27/59 (45%)

Query: 194 FRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLKRRR 252
            RW     P  +D   ++E  E +I+   R++G  A  G+ EL E +  L    L R R
Sbjct: 56  LRWRVTGAPLGLDRPWFVEDEELDIDFHIRRIGVPAPGGRRELEELVGRLMSYKLDRSR 114


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.131    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,072,234
Number of Sequences: 539616
Number of extensions: 3807114
Number of successful extensions: 21423
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 21268
Number of HSP's gapped (non-prelim): 168
length of query: 262
length of database: 191,569,459
effective HSP length: 115
effective length of query: 147
effective length of database: 129,513,619
effective search space: 19038501993
effective search space used: 19038501993
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)