Query 024794
Match_columns 262
No_of_seqs 117 out of 136
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 07:27:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05542 DUF760: Protein of un 100.0 2.3E-34 5E-39 222.7 9.9 85 81-165 1-86 (86)
2 PF05542 DUF760: Protein of un 96.1 0.0011 2.5E-08 51.6 -0.7 29 234-262 1-31 (86)
3 PF06698 DUF1192: Protein of u 61.0 13 0.00027 28.0 3.5 25 205-229 24-48 (59)
4 PF05308 Mito_fiss_reg: Mitoch 40.4 31 0.00066 32.3 3.3 25 204-228 117-141 (253)
5 PF14193 DUF4315: Domain of un 35.1 52 0.0011 26.1 3.4 43 207-252 13-57 (83)
6 PF07888 CALCOCO1: Calcium bin 30.2 38 0.00083 35.1 2.5 16 230-245 437-452 (546)
7 PRK00084 ispF 2-C-methyl-D-ery 29.9 56 0.0012 28.8 3.1 28 105-133 109-136 (159)
8 PF11853 DUF3373: Protein of u 29.6 31 0.00067 35.3 1.7 24 204-227 26-49 (489)
9 KOG4119 G protein gamma subuni 28.0 80 0.0017 24.6 3.3 37 211-247 9-48 (71)
10 PF02258 SLT_beta: Shiga-like 27.4 39 0.00085 26.4 1.5 19 131-149 31-49 (70)
11 PF04977 DivIC: Septum formati 27.0 61 0.0013 23.4 2.5 9 244-252 53-61 (80)
12 COG3074 Uncharacterized protei 26.9 91 0.002 24.8 3.5 20 206-225 15-34 (79)
13 TIGR00151 ispF 2C-methyl-D-ery 25.8 75 0.0016 27.9 3.2 28 105-133 106-133 (155)
14 PF07521 RMMBL: RNA-metabolisi 25.5 28 0.00061 23.7 0.4 18 231-248 18-35 (43)
15 smart00224 GGL G protein gamma 23.5 61 0.0013 24.0 1.9 31 212-242 2-35 (63)
16 smart00353 HLH helix loop heli 23.5 56 0.0012 22.0 1.6 15 205-219 38-52 (53)
17 PF04508 Pox_A_type_inc: Viral 22.6 1E+02 0.0022 19.4 2.5 16 211-226 3-18 (23)
18 smart00338 BRLZ basic region l 22.6 1.2E+02 0.0026 21.9 3.2 21 207-227 24-44 (65)
19 PF08826 DMPK_coil: DMPK coile 22.5 1.3E+02 0.0027 22.7 3.4 23 205-227 35-57 (61)
20 KOG0709 CREB/ATF family transc 22.4 89 0.0019 32.1 3.4 39 207-246 270-315 (472)
21 PTZ00405 cytochrome c; Provisi 22.3 29 0.00063 28.4 -0.0 16 229-244 98-113 (114)
22 PF14178 YppF: YppF-like prote 22.2 70 0.0015 24.4 2.0 25 218-242 3-30 (60)
23 PF11157 DUF2937: Protein of u 21.9 1.8E+02 0.0039 25.4 4.8 39 207-245 25-70 (167)
24 COG5509 Uncharacterized small 21.5 1E+02 0.0022 23.8 2.7 24 205-228 28-51 (65)
25 PF13821 DUF4187: Domain of un 20.6 71 0.0015 23.3 1.7 28 235-262 18-55 (55)
26 PTZ00048 cytochrome c; Provisi 20.0 38 0.00082 27.5 0.2 17 229-245 98-114 (115)
No 1
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=100.00 E-value=2.3e-34 Score=222.73 Aligned_cols=85 Identities=44% Similarity=0.733 Sum_probs=83.5
Q ss_pred hHHHHHHHhcChhHHHHHhccCcHHHHHHHHHHHHHhhcCC-CCCCcceEEEecHHhHHHHHHHHHhHhHhhchhhhHHH
Q 024794 81 DILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTL-PPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLE 159 (262)
Q Consensus 81 N~Ll~YLqsl~Pe~is~lsk~aSpeV~eaM~~tV~gLLG~L-P~~~F~vtItTsrE~LArLL~S~MMTGYfLRNAE~Rl~ 159 (262)
|.||+|||+++||.+++|++++||||+|+|+++|++|||.+ |+++|+++|+|+|++||+|++|+|||||||||||||++
T Consensus 1 n~L~~yi~~l~pe~~~~l~~~~s~ev~e~m~~~v~~llG~l~p~~~~~~~i~~s~~~La~L~~~~mm~GYfLr~~E~R~~ 80 (86)
T PF05542_consen 1 NDLLQYIQSLKPERIQQLSEPASPEVLEAMKQHVSGLLGNLSPSDQFNVTIQTSRENLAQLLAWSMMTGYFLRNAEQRLE 80 (86)
T ss_pred ChHHHHHHHCCHHHHHHhhccCCHHHHHHHHHHHHHHHcCCCCcccCcceeEECHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHhhhh
Q 024794 160 LQQSLE 165 (262)
Q Consensus 160 Le~sL~ 165 (262)
||++|.
T Consensus 81 Le~sL~ 86 (86)
T PF05542_consen 81 LERSLK 86 (86)
T ss_pred HHHhcC
Confidence 999974
No 2
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=96.08 E-value=0.0011 Score=51.60 Aligned_cols=29 Identities=24% Similarity=0.544 Sum_probs=25.2
Q ss_pred chHHHHhhcCCccchhcccc--CcccccccC
Q 024794 234 NELLEYLKTLEPQNLKRRRR--CCACDEHIH 262 (262)
Q Consensus 234 NdLLdYLRSL~pe~v~eLs~--~~~~~e~i~ 262 (262)
|+|++||++|+|+.+++|++ +|.|.|+|+
T Consensus 1 n~L~~yi~~l~pe~~~~l~~~~s~ev~e~m~ 31 (86)
T PF05542_consen 1 NDLLQYIQSLKPERIQQLSEPASPEVLEAMK 31 (86)
T ss_pred ChHHHHHHHCCHHHHHHhhccCCHHHHHHHH
Confidence 89999999999999999995 567777763
No 3
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=61.02 E-value=13 Score=27.99 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhHh
Q 024794 205 IDAKKYIEFLEAEIEELNRQLGRKA 229 (262)
Q Consensus 205 ~dA~~YI~~Le~el~eL~~q~~~~~ 229 (262)
-|=.+||..|+.||..++.++.+|.
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999887653
No 4
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=40.35 E-value=31 Score=32.26 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhH
Q 024794 204 KIDAKKYIEFLEAEIEELNRQLGRK 228 (262)
Q Consensus 204 ~~dA~~YI~~Le~el~eL~~q~~~~ 228 (262)
..+|.+=|..||.||..||.|...-
T Consensus 117 ~~~AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 117 NEAALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999998763
No 5
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=35.09 E-value=52 Score=26.08 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhcCcchHHHHhhc--CCccchhccc
Q 024794 207 AKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKT--LEPQNLKRRR 252 (262)
Q Consensus 207 A~~YI~~Le~el~eL~~q~~~~~~~~~NdLLdYLRS--L~pe~v~eLs 252 (262)
+.+=|..+|..|.+|.+|..+ ++.-++++-.|+ |+|++|..|=
T Consensus 13 ~k~Kiae~Q~rlK~Le~qk~E---~EN~EIv~~VR~~~mtp~eL~~~L 57 (83)
T PF14193_consen 13 TKEKIAELQARLKELEAQKTE---AENLEIVQMVRSMKMTPEELAAFL 57 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 445566777777777666554 456666676775 4677766653
No 6
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=30.21 E-value=38 Score=35.13 Aligned_cols=16 Identities=44% Similarity=0.760 Sum_probs=13.3
Q ss_pred hcCcchHHHHhhcCCc
Q 024794 230 TNGQNELLEYLKTLEP 245 (262)
Q Consensus 230 ~~~~NdLLdYLRSL~p 245 (262)
.+++.+|++|++-|+-
T Consensus 437 ~~EkQeL~~yi~~Le~ 452 (546)
T PF07888_consen 437 QEEKQELLEYIERLEQ 452 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3479999999999864
No 7
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
Probab=29.86 E-value=56 Score=28.83 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcceEEEec
Q 024794 105 QVVDAMRQTVTNMIGTLPPQFFAVTVTTV 133 (262)
Q Consensus 105 eV~eaM~~tV~gLLG~LP~~~F~vtItTs 133 (262)
.-+++|+++|..+||. |.+..+++.||+
T Consensus 109 p~~~~m~~~la~~L~i-~~~~V~iKatT~ 136 (159)
T PRK00084 109 PHIEEMRANIAEDLGI-PLDDVNVKATTT 136 (159)
T ss_pred HHHHHHHHHHHHHhCC-CcceEEEEEecC
Confidence 4789999999999994 778888777754
No 8
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=29.57 E-value=31 Score=35.31 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=19.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhh
Q 024794 204 KIDAKKYIEFLEAEIEELNRQLGR 227 (262)
Q Consensus 204 ~~dA~~YI~~Le~el~eL~~q~~~ 227 (262)
.++.++=|++|++||++|++|++.
T Consensus 26 ~~~~~qkie~L~kql~~Lk~q~~~ 49 (489)
T PF11853_consen 26 DIDLLQKIEALKKQLEELKAQQDD 49 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcc
Confidence 355667899999999999998763
No 9
>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]
Probab=27.96 E-value=80 Score=24.64 Aligned_cols=37 Identities=30% Similarity=0.465 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHh--h-HhhcCcchHHHHhhcCCccc
Q 024794 211 IEFLEAEIEELNRQLG--R-KATNGQNELLEYLKTLEPQN 247 (262)
Q Consensus 211 I~~Le~el~eL~~q~~--~-~~~~~~NdLLdYLRSL~pe~ 247 (262)
+.++++++++|+.|+. | +...-..||++|+-.-.++.
T Consensus 9 ~~q~k~~VeqLk~e~~~~R~~vS~a~~el~~y~E~~~~~D 48 (71)
T KOG4119|consen 9 KPQMKKEVEQLKLEANIERIKVSKAAAELLEYCETHATED 48 (71)
T ss_pred hHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHhcCccC
Confidence 5566777777777654 2 23344678999987765443
No 10
>PF02258 SLT_beta: Shiga-like toxin beta subunit; InterPro: IPR003189 This family represents the B subunit of shiga-like toxin (SLT or verotoxin) produced by some strains of Escherichia coli associated with hemorrhagic colitis and hemolytic uremic syndrome. SLT s are composed of one enzymatic A subunit and five cell binding B subunits.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2GA4_B 1R4P_D 1BOS_I 4ULL_A 2C5C_I 1QNU_C 1CZW_F 1D1I_C 1CZG_D 2XSC_D ....
Probab=27.36 E-value=39 Score=26.41 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=16.4
Q ss_pred EecHHhHHHHHHHHHhHhH
Q 024794 131 TTVAENLAQLMYSVMMTGY 149 (262)
Q Consensus 131 tTsrE~LArLL~S~MMTGY 149 (262)
-|+|=+|+.+|.|+.++|-
T Consensus 31 ~Ts~wnL~~~L~sa~~~G~ 49 (70)
T PF02258_consen 31 WTSRWNLQSPLLSAQITGM 49 (70)
T ss_dssp EE-STTHHHHHHHHHHHTS
T ss_pred eccCcccccceeeeEEcce
Confidence 4899999999999999994
No 11
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=27.01 E-value=61 Score=23.36 Aligned_cols=9 Identities=11% Similarity=0.516 Sum_probs=5.1
Q ss_pred Cccchhccc
Q 024794 244 EPQNLKRRR 252 (262)
Q Consensus 244 ~pe~v~eLs 252 (262)
+|+.+.+++
T Consensus 53 ~~~~ie~~A 61 (80)
T PF04977_consen 53 DPDYIEKVA 61 (80)
T ss_pred CHHHHHHHH
Confidence 566555554
No 12
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.92 E-value=91 Score=24.79 Aligned_cols=20 Identities=40% Similarity=0.488 Sum_probs=17.5
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 024794 206 DAKKYIEFLEAEIEELNRQL 225 (262)
Q Consensus 206 dA~~YI~~Le~el~eL~~q~ 225 (262)
.|.+-|..|+-||++||.+.
T Consensus 15 qAvdTI~LLQmEieELKEkn 34 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKN 34 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999998853
No 13
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=25.79 E-value=75 Score=27.92 Aligned_cols=28 Identities=29% Similarity=0.539 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcceEEEec
Q 024794 105 QVVDAMRQTVTNMIGTLPPQFFAVTVTTV 133 (262)
Q Consensus 105 eV~eaM~~tV~gLLG~LP~~~F~vtItTs 133 (262)
..+++|+++|..+|| +|....+++.||+
T Consensus 106 p~~~~m~~~la~~L~-~~~~~V~iKatT~ 133 (155)
T TIGR00151 106 PHIPAMRENIAELLG-IPLDSVNVKATTT 133 (155)
T ss_pred HHHHHHHHHHHHHhC-CCcceEEEEEecC
Confidence 478999999999999 4888888877764
No 14
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=25.52 E-value=28 Score=23.67 Aligned_cols=18 Identities=33% Similarity=0.798 Sum_probs=14.9
Q ss_pred cCcchHHHHhhcCCccch
Q 024794 231 NGQNELLEYLKTLEPQNL 248 (262)
Q Consensus 231 ~~~NdLLdYLRSL~pe~v 248 (262)
+.+++|+.|++.+.|++|
T Consensus 18 ad~~~L~~~i~~~~p~~v 35 (43)
T PF07521_consen 18 ADREELLEFIEQLNPRKV 35 (43)
T ss_dssp -BHHHHHHHHHHHCSSEE
T ss_pred CCHHHHHHHHHhcCCCEE
Confidence 368999999999999765
No 15
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=23.54 E-value=61 Score=23.99 Aligned_cols=31 Identities=35% Similarity=0.643 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhh---HhhcCcchHHHHhhc
Q 024794 212 EFLEAEIEELNRQLGR---KATNGQNELLEYLKT 242 (262)
Q Consensus 212 ~~Le~el~eL~~q~~~---~~~~~~NdLLdYLRS 242 (262)
++++.+++.||+++.+ +....=.+|+.|.-.
T Consensus 2 ~~~~~~ve~Lr~el~~~RikvS~a~~~li~y~e~ 35 (63)
T smart00224 2 DQLRKEVEQLRKELSRERIKVSKAAEELLAYCEQ 35 (63)
T ss_pred hHHHHHHHHHHHHHCCceehHHHHHHHHHHHHHc
Confidence 5688899999998875 344455688888765
No 16
>smart00353 HLH helix loop helix domain.
Probab=23.53 E-value=56 Score=22.05 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=12.5
Q ss_pred ccHHHHHHHHHHHHH
Q 024794 205 IDAKKYIEFLEAEIE 219 (262)
Q Consensus 205 ~dA~~YI~~Le~el~ 219 (262)
-.|.+||..|+.+++
T Consensus 38 ~~ai~yi~~L~~~~~ 52 (53)
T smart00353 38 RLAIEYIKSLQEELQ 52 (53)
T ss_pred HHHHHHHHHHHHHHh
Confidence 469999999998875
No 17
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=22.61 E-value=1e+02 Score=19.43 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 024794 211 IEFLEAEIEELNRQLG 226 (262)
Q Consensus 211 I~~Le~el~eL~~q~~ 226 (262)
|..|+++|.+|++|+.
T Consensus 3 ~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 3 MNRLRNRISDLERQLS 18 (23)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5567777777777764
No 18
>smart00338 BRLZ basic region leucin zipper.
Probab=22.59 E-value=1.2e+02 Score=21.87 Aligned_cols=21 Identities=38% Similarity=0.428 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 024794 207 AKKYIEFLEAEIEELNRQLGR 227 (262)
Q Consensus 207 A~~YI~~Le~el~eL~~q~~~ 227 (262)
-+.||..||.++..|..+...
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~ 44 (65)
T smart00338 24 KKAEIEELERKVEQLEAENER 44 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367999999998888776543
No 19
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=22.54 E-value=1.3e+02 Score=22.71 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Q 024794 205 IDAKKYIEFLEAEIEELNRQLGR 227 (262)
Q Consensus 205 ~dA~~YI~~Le~el~eL~~q~~~ 227 (262)
-||.+.+..|+.+|+.|++++.+
T Consensus 35 qeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 35 QEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888888899999999888865
No 20
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=22.41 E-value=89 Score=32.09 Aligned_cols=39 Identities=31% Similarity=0.489 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHH-------HHHHHHHhhHhhcCcchHHHHhhcCCcc
Q 024794 207 AKKYIEFLEAEI-------EELNRQLGRKATNGQNELLEYLKTLEPQ 246 (262)
Q Consensus 207 A~~YI~~Le~el-------~eL~~q~~~~~~~~~NdLLdYLRSL~pe 246 (262)
-++||..||..+ .+|++|+++.+. ..-.||+=||-|+-.
T Consensus 270 KkeYid~LE~rv~~~taeNqeL~kkV~~Le~-~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 270 KKEYIDGLESRVSAFTAENQELQKKVEELEL-SNRSLLAQLKKLQTL 315 (472)
T ss_pred HhhHHHHHhhhhhhcccCcHHHHHHHHHHhh-ccHHHHHHHHHHHHH
Confidence 578999999998 457777776533 344788888877643
No 21
>PTZ00405 cytochrome c; Provisional
Probab=22.32 E-value=29 Score=28.38 Aligned_cols=16 Identities=25% Similarity=0.601 Sum_probs=13.3
Q ss_pred hhcCcchHHHHhhcCC
Q 024794 229 ATNGQNELLEYLKTLE 244 (262)
Q Consensus 229 ~~~~~NdLLdYLRSL~ 244 (262)
..+.+.||++||++|.
T Consensus 98 ~~~dr~~liaYL~sl~ 113 (114)
T PTZ00405 98 KPQERADVIAYLETLK 113 (114)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 3567899999999985
No 22
>PF14178 YppF: YppF-like protein
Probab=22.17 E-value=70 Score=24.35 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=16.7
Q ss_pred HHHHHH---HHhhHhhcCcchHHHHhhc
Q 024794 218 IEELNR---QLGRKATNGQNELLEYLKT 242 (262)
Q Consensus 218 l~eL~~---q~~~~~~~~~NdLLdYLRS 242 (262)
|++|+. +++.-+-+.-|+||||-|-
T Consensus 3 l~eLk~~F~~~k~y~p~~~NeLLDFar~ 30 (60)
T PF14178_consen 3 LHELKQKFMQKKKYEPEDMNELLDFARK 30 (60)
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHH
Confidence 455555 3444456678999999874
No 23
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=21.91 E-value=1.8e+02 Score=25.43 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHh-------hcCcchHHHHhhcCCc
Q 024794 207 AKKYIEFLEAEIEELNRQLGRKA-------TNGQNELLEYLKTLEP 245 (262)
Q Consensus 207 A~~YI~~Le~el~eL~~q~~~~~-------~~~~NdLLdYLRSL~p 245 (262)
+++|-+.|..-++|++.++..++ +...+++++.++.-+.
T Consensus 25 ~~qY~QrL~g~~~e~~~~v~~F~~~A~~~f~~~~~~li~~~~~s~d 70 (167)
T PF11157_consen 25 AQQYQQRLGGHLDELRRQVAGFQATAARYFGGDREALIAHYRQSSD 70 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 78999999999999999987542 3456777777766555
No 24
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=21.54 E-value=1e+02 Score=23.82 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhH
Q 024794 205 IDAKKYIEFLEAEIEELNRQLGRK 228 (262)
Q Consensus 205 ~dA~~YI~~Le~el~eL~~q~~~~ 228 (262)
.|-.+-|..||+||+.|+.|+.+|
T Consensus 28 ~El~eRIalLq~EIeRlkAe~~kK 51 (65)
T COG5509 28 AELEERIALLQAEIERLKAELAKK 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355678999999999999998765
No 25
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=20.62 E-value=71 Score=23.35 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=19.9
Q ss_pred hHHHHhhc---------CCccchhcc-ccCcccccccC
Q 024794 235 ELLEYLKT---------LEPQNLKRR-RRCCACDEHIH 262 (262)
Q Consensus 235 dLLdYLRS---------L~pe~v~eL-s~~~~~~e~i~ 262 (262)
.|+.|||+ ..=+...+| ..|||.-|.-|
T Consensus 18 ~l~~YLR~~~~YC~~Cg~~Y~d~~dL~~~CPG~t~~dH 55 (55)
T PF13821_consen 18 KLLSYLREEHNYCFWCGTKYDDEEDLERNCPGPTEDDH 55 (55)
T ss_pred HHHHHHHhhCceeeeeCCccCCHHHHHhCCCCCCcccC
Confidence 47888885 344445566 68999988877
No 26
>PTZ00048 cytochrome c; Provisional
Probab=20.04 E-value=38 Score=27.51 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=13.7
Q ss_pred hhcCcchHHHHhhcCCc
Q 024794 229 ATNGQNELLEYLKTLEP 245 (262)
Q Consensus 229 ~~~~~NdLLdYLRSL~p 245 (262)
..+++.+|..||++|+.
T Consensus 98 ~~~~~~~liaYL~s~~~ 114 (115)
T PTZ00048 98 KEKERADLIAYLKEASS 114 (115)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 35567899999999975
Done!