Query 024794
Match_columns 262
No_of_seqs 117 out of 136
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 14:32:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hlo_A Protein (transcription 80.0 1.6 5.3E-05 32.2 3.5 24 205-228 53-76 (80)
2 1nkp_B MAX protein, MYC proto- 76.2 2.9 0.0001 30.8 4.1 24 205-228 43-66 (83)
3 1am9_A Srebp-1A, protein (ster 73.6 2.3 8E-05 31.6 3.0 23 205-227 46-68 (82)
4 1nlw_A MAD protein, MAX dimeri 55.2 13 0.00044 27.7 3.9 23 205-227 43-65 (80)
5 2er8_A Regulatory protein Leu3 53.3 8.9 0.0003 26.6 2.6 23 206-228 46-68 (72)
6 1zme_C Proline utilization tra 49.8 17 0.00057 24.9 3.6 23 207-229 42-64 (70)
7 1nkp_A C-MYC, MYC proto-oncoge 47.7 16 0.00054 27.6 3.4 22 205-226 48-69 (88)
8 4ati_A MITF, microphthalmia-as 42.5 13 0.00043 29.6 2.2 22 205-226 70-91 (118)
9 3he5_A Synzip1; heterodimeric 40.3 30 0.001 23.9 3.5 32 210-241 4-37 (49)
10 4ath_A MITF, microphthalmia-as 39.7 16 0.00055 28.1 2.3 38 206-243 36-75 (83)
11 3u5v_A Protein MAX, transcript 39.5 13 0.00046 27.5 1.8 16 206-221 49-64 (76)
12 1dh3_A Transcription factor CR 38.7 29 0.00098 24.2 3.3 20 208-227 21-40 (55)
13 3coq_A Regulatory protein GAL4 31.4 68 0.0023 22.6 4.5 22 207-228 43-64 (89)
14 1xkm_B Distinctin chain B; por 30.5 21 0.0007 22.0 1.3 17 204-220 6-22 (26)
15 1ci6_A Transcription factor AT 29.8 43 0.0015 23.8 3.1 18 208-225 22-39 (63)
16 1gk6_A Vimentin; intermediate 28.7 54 0.0018 23.0 3.4 33 205-238 3-35 (59)
17 1gd2_E Transcription factor PA 27.8 20 0.0007 26.4 1.1 19 208-226 28-46 (70)
18 1use_A VAsp, vasodilator-stimu 27.0 1E+02 0.0034 21.3 4.4 33 205-242 4-37 (45)
19 2w72_C Human hemoglobin A; iro 25.9 40 0.0014 25.9 2.6 70 81-150 64-141 (141)
20 1n7s_A Vesicle-associated memb 25.6 47 0.0016 23.2 2.7 26 93-119 4-29 (63)
21 2r80_A Hemoglobin subunit alph 24.7 52 0.0018 25.5 3.1 70 81-150 64-141 (141)
22 1iv3_A 2-C-methyl-D-erythritol 24.3 46 0.0016 28.0 2.8 29 107-137 109-137 (152)
23 3re3_A 2-C-methyl-D-erythritol 24.2 47 0.0016 28.3 2.9 26 107-133 115-140 (162)
24 1jdl_A C552, cytochrome C2, IS 24.1 21 0.00071 26.4 0.6 16 231-246 106-121 (121)
25 3b5n_A Synaptobrevin homolog 1 23.9 52 0.0018 22.9 2.6 24 95-119 4-27 (61)
26 1a6m_A Myoglobin; heme protein 23.6 61 0.0021 25.4 3.3 70 81-150 70-147 (151)
27 1lhs_A Myoglobin; oxygen stora 23.5 80 0.0027 24.7 4.0 70 81-150 70-147 (153)
28 1c4q_A Protein (shiga-like tox 23.4 33 0.0011 25.4 1.6 28 124-151 18-50 (69)
29 1got_G GT-gamma; complex (GTP- 22.5 39 0.0013 25.0 1.8 31 211-241 19-52 (73)
30 3i00_A HIP-I, huntingtin-inter 22.3 73 0.0025 25.6 3.5 24 204-227 35-58 (120)
31 2pmp_A 2-C-methyl-D-erythritol 22.0 55 0.0019 27.8 2.8 30 106-137 111-140 (160)
32 1t0a_A 2C-methyl-D-erythritol 21.9 54 0.0018 27.8 2.8 26 107-133 111-136 (159)
33 3f0d_A 2-C-methyl-D-erythritol 21.2 57 0.002 28.3 2.8 29 107-137 132-160 (183)
34 1gx1_A 2-C-methyl-D-erythritol 21.0 57 0.002 27.7 2.8 27 106-133 109-135 (160)
No 1
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=80.04 E-value=1.6 Score=32.21 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=20.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhH
Q 024794 205 IDAKKYIEFLEAEIEELNRQLGRK 228 (262)
Q Consensus 205 ~dA~~YI~~Le~el~eL~~q~~~~ 228 (262)
-.|.+||..|+.++.+|+.++.+.
T Consensus 53 ~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 53 DKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999987754
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=76.19 E-value=2.9 Score=30.78 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=19.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhH
Q 024794 205 IDAKKYIEFLEAEIEELNRQLGRK 228 (262)
Q Consensus 205 ~dA~~YI~~Le~el~eL~~q~~~~ 228 (262)
-.|.+||..|+.++.+|+.++.+.
T Consensus 43 ~~Ai~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 43 DKATEYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999888888776543
No 3
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=73.57 E-value=2.3 Score=31.63 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=19.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Q 024794 205 IDAKKYIEFLEAEIEELNRQLGR 227 (262)
Q Consensus 205 ~dA~~YI~~Le~el~eL~~q~~~ 227 (262)
-+|.+||..|+.+++.|+.+..+
T Consensus 46 ~~Ai~YI~~Lq~~~~~L~~e~~~ 68 (82)
T 1am9_A 46 RKAIDYIRFLQHSNQKLKQENLS 68 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999998887654
No 4
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=55.17 E-value=13 Score=27.72 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=18.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Q 024794 205 IDAKKYIEFLEAEIEELNRQLGR 227 (262)
Q Consensus 205 ~dA~~YI~~Le~el~eL~~q~~~ 227 (262)
-.|.+||..|+.+..++..++.+
T Consensus 43 ~kA~~yI~~L~~~~~~l~~e~~~ 65 (80)
T 1nlw_A 43 TKAKLHIKKLEDSDRKAVHQIDQ 65 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999988777776543
No 5
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=53.27 E-value=8.9 Score=26.62 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhH
Q 024794 206 DAKKYIEFLEAEIEELNRQLGRK 228 (262)
Q Consensus 206 dA~~YI~~Le~el~eL~~q~~~~ 228 (262)
....||..||.+|++|..++...
T Consensus 46 ~~~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 46 YKRARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999988764
No 6
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=49.82 E-value=17 Score=24.88 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHh
Q 024794 207 AKKYIEFLEAEIEELNRQLGRKA 229 (262)
Q Consensus 207 A~~YI~~Le~el~eL~~q~~~~~ 229 (262)
...||..|+.+|++|.+++....
T Consensus 42 ~~~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 42 STKYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999887643
No 7
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=47.69 E-value=16 Score=27.55 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=17.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHh
Q 024794 205 IDAKKYIEFLEAEIEELNRQLG 226 (262)
Q Consensus 205 ~dA~~YI~~Le~el~eL~~q~~ 226 (262)
-.|.+||..|+.+...+..++.
T Consensus 48 ~~A~~YI~~L~~~~~~l~~~~~ 69 (88)
T 1nkp_A 48 KKATAYILSVQAEEQKLISEED 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999877666544
No 8
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=42.53 E-value=13 Score=29.57 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=18.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHh
Q 024794 205 IDAKKYIEFLEAEIEELNRQLG 226 (262)
Q Consensus 205 ~dA~~YI~~Le~el~eL~~q~~ 226 (262)
-.|.+||..|+.+++.|+....
T Consensus 70 ~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 70 KASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999887543
No 9
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=40.30 E-value=30 Score=23.95 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhh--HhhcCcchHHHHhh
Q 024794 210 YIEFLEAEIEELNRQLGR--KATNGQNELLEYLK 241 (262)
Q Consensus 210 YI~~Le~el~eL~~q~~~--~~~~~~NdLLdYLR 241 (262)
.+.+|+.|+..|..+..- +..--++||..||.
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliayle 37 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLE 37 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHH
Confidence 467888888888775432 22334789999984
No 10
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=39.69 E-value=16 Score=28.08 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHh--hcCcchHHHHhhcC
Q 024794 206 DAKKYIEFLEAEIEELNRQLGRKA--TNGQNELLEYLKTL 243 (262)
Q Consensus 206 dA~~YI~~Le~el~eL~~q~~~~~--~~~~NdLLdYLRSL 243 (262)
-|.+||..|+.|.+.++....+.. ......|+.-+.-|
T Consensus 36 ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqEL 75 (83)
T 4ath_A 36 ASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQEL 75 (83)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 489999999999988887655421 12233455555444
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=39.49 E-value=13 Score=27.52 Aligned_cols=16 Identities=31% Similarity=0.252 Sum_probs=14.0
Q ss_pred cHHHHHHHHHHHHHHH
Q 024794 206 DAKKYIEFLEAEIEEL 221 (262)
Q Consensus 206 dA~~YI~~Le~el~eL 221 (262)
.|.+||..|+.++.++
T Consensus 49 ~AieYI~~Lq~~l~e~ 64 (76)
T 3u5v_A 49 QAVQVILGLEQQVRER 64 (76)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4999999999998874
No 12
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=38.66 E-value=29 Score=24.19 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 024794 208 KKYIEFLEAEIEELNRQLGR 227 (262)
Q Consensus 208 ~~YI~~Le~el~eL~~q~~~ 227 (262)
+.||..||.++..|..+...
T Consensus 21 k~~~~~LE~~v~~L~~eN~~ 40 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKT 40 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58999999999988886554
No 13
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=31.44 E-value=68 Score=22.62 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH
Q 024794 207 AKKYIEFLEAEIEELNRQLGRK 228 (262)
Q Consensus 207 A~~YI~~Le~el~eL~~q~~~~ 228 (262)
...||..|+.+|++|...+.+.
T Consensus 43 ~~~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 43 TRAHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999888764
No 14
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=30.54 E-value=21 Score=21.99 Aligned_cols=17 Identities=35% Similarity=0.675 Sum_probs=13.0
Q ss_pred cccHHHHHHHHHHHHHH
Q 024794 204 KIDAKKYIEFLEAEIEE 220 (262)
Q Consensus 204 ~~dA~~YI~~Le~el~e 220 (262)
-+||.+|+++|-..+..
T Consensus 6 liearkyleqlhrklkn 22 (26)
T 1xkm_B 6 LIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 47899999998776543
No 15
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.84 E-value=43 Score=23.75 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024794 208 KKYIEFLEAEIEELNRQL 225 (262)
Q Consensus 208 ~~YI~~Le~el~eL~~q~ 225 (262)
.+++..|+.++++|..+.
T Consensus 22 k~~~~~le~~~~~L~~~N 39 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKN 39 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345777777777766643
No 16
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=28.69 E-value=54 Score=22.97 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=23.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhHhhcCcchHHH
Q 024794 205 IDAKKYIEFLEAEIEELNRQLGRKATNGQNELLE 238 (262)
Q Consensus 205 ~dA~~YI~~Le~el~eL~~q~~~~~~~~~NdLLd 238 (262)
.+++.-|..|++++.++|.++.+.. .+-.+||+
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~-~eYq~Lln 35 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLK-KLVGDLLN 35 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3577889999999999999887542 23344444
No 17
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.81 E-value=20 Score=26.42 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 024794 208 KKYIEFLEAEIEELNRQLG 226 (262)
Q Consensus 208 ~~YI~~Le~el~eL~~q~~ 226 (262)
.+||..||.+|.+|.....
T Consensus 28 ~~~i~~LE~~v~~le~~~~ 46 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHS 46 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5799999999998887544
No 18
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=27.03 E-value=1e+02 Score=21.35 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=21.3
Q ss_pred ccHHHHHHHHHHH-HHHHHHHHhhHhhcCcchHHHHhhc
Q 024794 205 IDAKKYIEFLEAE-IEELNRQLGRKATNGQNELLEYLKT 242 (262)
Q Consensus 205 ~dA~~YI~~Le~e-l~eL~~q~~~~~~~~~NdLLdYLRS 242 (262)
+++.+ ++.+..| |+|+|++++.. |||++|-||+
T Consensus 4 ~~~~d-le~~KqEIL~E~RkElqK~----K~EIIeAi~~ 37 (45)
T 1use_A 4 SDYSD-LQRVKQELLEEVKKELQKV----KEEIIEAFVQ 37 (45)
T ss_dssp CCHHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 44444 4555555 48888887753 6778877765
No 19
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=25.94 E-value=40 Score=25.94 Aligned_cols=70 Identities=14% Similarity=0.188 Sum_probs=50.4
Q ss_pred hHHHHHHHhcCh--hHHHHHh------ccCcHHHHHHHHHHHHHhhcCCCCCCcceEEEecHHhHHHHHHHHHhHhHh
Q 024794 81 DILLEYVKNVQP--EFMELFV------KRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYM 150 (262)
Q Consensus 81 N~Ll~YLqsl~P--e~is~ls------k~aSpeV~eaM~~tV~gLLG~LP~~~F~vtItTsrE~LArLL~S~MMTGYf 150 (262)
+.|..+++.++- ..+..++ ..+.|+-.+++...+...|...=++.|...+...|+.+-..++.+|..||.
T Consensus 64 ~al~~~v~~ld~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~i~~~l~~~y~ 141 (141)
T 2w72_C 64 DALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR 141 (141)
T ss_dssp HHHHHHHHTTTSHHHHTHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 556666666653 2445554 466777777777777766666544668777788899999999999999983
No 20
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=25.58 E-value=47 Score=23.16 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=20.7
Q ss_pred hHHHHHhccCcHHHHHHHHHHHHHhhc
Q 024794 93 EFMELFVKRAPEQVVDAMRQTVTNMIG 119 (262)
Q Consensus 93 e~is~lsk~aSpeV~eaM~~tV~gLLG 119 (262)
+.+..+.... .+|+.+|..||..+|.
T Consensus 4 d~l~~v~~~l-~ev~~iM~~NI~~vl~ 29 (63)
T 1n7s_A 4 RRLQQTQAQV-DEVVDIMRVNVDKVLE 29 (63)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4566666655 7999999999999986
No 21
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=24.68 E-value=52 Score=25.55 Aligned_cols=70 Identities=10% Similarity=0.165 Sum_probs=53.6
Q ss_pred hHHHHHHHhcCh--hHHHHHh------ccCcHHHHHHHHHHHHHhhcCCCCCCcceEEEecHHhHHHHHHHHHhHhHh
Q 024794 81 DILLEYVKNVQP--EFMELFV------KRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYM 150 (262)
Q Consensus 81 N~Ll~YLqsl~P--e~is~ls------k~aSpeV~eaM~~tV~gLLG~LP~~~F~vtItTsrE~LArLL~S~MMTGYf 150 (262)
+.|..+++.++- ..+..|+ ..+.|+-.+++.+.+...|+..=++.|...+...|+.+-..++.+|..+|.
T Consensus 64 ~al~~~v~~ld~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~va~~l~~~y~ 141 (141)
T 2r80_A 64 EALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKYR 141 (141)
T ss_dssp HHHHHHHHTTTCHHHHTHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 567777777763 4555555 457788888888877777776555678888888999999999999999983
No 22
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=24.32 E-value=46 Score=28.03 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhcCCCCCCcceEEEecHHhH
Q 024794 107 VDAMRQTVTNMIGTLPPQFFAVTVTTVAENL 137 (262)
Q Consensus 107 ~eaM~~tV~gLLG~LP~~~F~vtItTsrE~L 137 (262)
.++|+++|..+|| +|.++.+|+.||+ |.|
T Consensus 109 ~~~m~~~ia~~L~-~~~~~V~vKAtT~-E~L 137 (152)
T 1iv3_A 109 RKALVDSLSRLMR-LPQDRIGLTFKTS-EGL 137 (152)
T ss_dssp HHHHHHHHHHHHT-CCGGGEEEEEECC-TTS
T ss_pred HHHHHHHHHHHhC-CCCceEEEEEecC-CCC
Confidence 6899999999997 5777777777654 444
No 23
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=24.21 E-value=47 Score=28.28 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhcCCCCCCcceEEEec
Q 024794 107 VDAMRQTVTNMIGTLPPQFFAVTVTTV 133 (262)
Q Consensus 107 ~eaM~~tV~gLLG~LP~~~F~vtItTs 133 (262)
.++|+++|..+|| +|.++.+|..||+
T Consensus 115 ~~~m~~~la~~L~-~~~~~V~vKAtT~ 140 (162)
T 3re3_A 115 IEKMRACLANILE-IQISQINIKATTT 140 (162)
T ss_dssp HHHHHHHHHHHHT-SCGGGEEEEEECC
T ss_pred HHHHHHHHHHHHC-CCCceEEEEEecC
Confidence 7899999999998 5777888877754
No 24
>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1
Probab=24.07 E-value=21 Score=26.40 Aligned_cols=16 Identities=31% Similarity=0.750 Sum_probs=12.7
Q ss_pred cCcchHHHHhhcCCcc
Q 024794 231 NGQNELLEYLKTLEPQ 246 (262)
Q Consensus 231 ~~~NdLLdYLRSL~pe 246 (262)
++..+|..||++|.++
T Consensus 106 ~ei~~l~aYL~sl~~~ 121 (121)
T 1jdl_A 106 QERKDVVAYLKQFSPQ 121 (121)
T ss_dssp HHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHHHHHcccC
Confidence 5577999999999864
No 25
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=23.87 E-value=52 Score=22.89 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=18.2
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhc
Q 024794 95 MELFVKRAPEQVVDAMRQTVTNMIG 119 (262)
Q Consensus 95 is~lsk~aSpeV~eaM~~tV~gLLG 119 (262)
+..+.... .+|+++|..||..+|.
T Consensus 4 l~~vq~~l-~evk~iM~~NI~~vl~ 27 (61)
T 3b5n_A 4 TAELQAEI-DDTVGIMRDNINKVAE 27 (61)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44444444 7899999999999886
No 26
>1a6m_A Myoglobin; heme protein, model compounds, oxygen storage, ligand binding geometry, conformational substates, oxygen transpor; HET: HEM; 1.00A {Physeter catodon} SCOP: a.1.1.2 PDB: 1a6k_A* 1a6n_A* 2jho_A* 1ufp_A* 2eb9_A* 2eb8_A* 2w6w_A* 2ekt_A* 105m_A* 104m_A* 1ajh_A* 1ajg_A* 1bvc_A* 1bvd_A* 1bz6_A* 1bzr_A* 1cq2_A* 1duk_A* 1ebc_A* 1hjt_A* ...
Probab=23.62 E-value=61 Score=25.38 Aligned_cols=70 Identities=10% Similarity=0.179 Sum_probs=52.7
Q ss_pred hHHHHHHHhcCh--hHHHHHh------ccCcHHHHHHHHHHHHHhhcCCCCCCcceEEEecHHhHHHHHHHHHhHhHh
Q 024794 81 DILLEYVKNVQP--EFMELFV------KRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYM 150 (262)
Q Consensus 81 N~Ll~YLqsl~P--e~is~ls------k~aSpeV~eaM~~tV~gLLG~LP~~~F~vtItTsrE~LArLL~S~MMTGYf 150 (262)
+.|-.+++.++- ..+.+|+ -.+.|+-.+++.+.+...|+..=++.|...+...|+.+-..++.+|..+|-
T Consensus 70 ~al~~~v~~ld~~~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~v~~~l~~~y~ 147 (151)
T 1a6m_A 70 TALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYK 147 (151)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777752 5566665 356778788888777777766545668777888999999999999999993
No 27
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=23.48 E-value=80 Score=24.73 Aligned_cols=70 Identities=13% Similarity=0.225 Sum_probs=53.8
Q ss_pred hHHHHHHHhcCh--hHHHHHhc------cCcHHHHHHHHHHHHHhhcCCCCCCcceEEEecHHhHHHHHHHHHhHhHh
Q 024794 81 DILLEYVKNVQP--EFMELFVK------RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYM 150 (262)
Q Consensus 81 N~Ll~YLqsl~P--e~is~lsk------~aSpeV~eaM~~tV~gLLG~LP~~~F~vtItTsrE~LArLL~S~MMTGYf 150 (262)
+.|-.+++.++- ..+.+|++ .+.|+-.+++.+.+...|...=++.|...+...|+.+-..++.+|..+|-
T Consensus 70 ~al~~~v~~ldd~~~~l~~L~~~H~~k~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y~ 147 (153)
T 1lhs_A 70 TALGRILKQKNNHEQELKPLAESHATKHKIPVKYLEFICEIIVKVIAEKHPSDFGADSQAAMKKALELFRNDMASKYK 147 (153)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777753 56666653 67788888888887777776545668888888999999999999999883
No 28
>1c4q_A Protein (shiga-like toxin I subunit B); receptor binding, protein-carbohydrate recognition, OB-fold; HET: GLA GAL BGC; 1.52A {Escherichia coli} SCOP: b.40.2.1 PDB: 1d1i_A* 1czw_A* 1d1k_A* 2xsc_A 1bos_A 1dm0_B 1qnu_A* 1r4q_B 2c5c_A* 1bov_A 4ull_A 1c48_A 1cqf_A* 1czg_A
Probab=23.43 E-value=33 Score=25.38 Aligned_cols=28 Identities=36% Similarity=0.481 Sum_probs=22.2
Q ss_pred CCcceEE-----EecHHhHHHHHHHHHhHhHhh
Q 024794 124 QFFAVTV-----TTVAENLAQLMYSVMMTGYMF 151 (262)
Q Consensus 124 ~~F~vtI-----tTsrE~LArLL~S~MMTGYfL 151 (262)
+.|.|.+ -|+|-||--||.|+.+||-..
T Consensus 18 ~tftvkv~gkeywt~rwnlqpllqsaqltgmtv 50 (69)
T 1c4q_A 18 DTFTVKVGDKELATNRANLQSLLLSAQITGMTV 50 (69)
T ss_dssp SCEEEEETTEEEEECCTTHHHHHHHHHHHTCEE
T ss_pred ceEEEEecCeeeeecccchhhHHhhceecceEE
Confidence 4555544 499999999999999999653
No 29
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=22.53 E-value=39 Score=25.05 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhh---HhhcCcchHHHHhh
Q 024794 211 IEFLEAEIEELNRQLGR---KATNGQNELLEYLK 241 (262)
Q Consensus 211 I~~Le~el~eL~~q~~~---~~~~~~NdLLdYLR 241 (262)
+.+|+.+++.||.|+.+ +...--.+|+.|..
T Consensus 19 ~~~lr~~veqLr~el~~~RikVS~aa~~L~~Yce 52 (73)
T 1got_G 19 KDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVE 52 (73)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHH
Confidence 56788888888888764 33444567777765
No 30
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=22.33 E-value=73 Score=25.55 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=20.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhh
Q 024794 204 KIDAKKYIEFLEAEIEELNRQLGR 227 (262)
Q Consensus 204 ~~dA~~YI~~Le~el~eL~~q~~~ 227 (262)
..+|+.||.+|+.+|.+|..++..
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999888887653
No 31
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=22.01 E-value=55 Score=27.82 Aligned_cols=30 Identities=17% Similarity=0.428 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCcceEEEecHHhH
Q 024794 106 VVDAMRQTVTNMIGTLPPQFFAVTVTTVAENL 137 (262)
Q Consensus 106 V~eaM~~tV~gLLG~LP~~~F~vtItTsrE~L 137 (262)
-.++|+++|..+|| +|.++.+|+.||+ |.|
T Consensus 111 ~~~~m~~~ia~~L~-~~~~~V~vKAtT~-E~L 140 (160)
T 2pmp_A 111 HKETIRSNLSKLLG-ADPSVVNLKAKTH-EKV 140 (160)
T ss_dssp GHHHHHHHHHHHHT-CCGGGEEEEEECC-TTC
T ss_pred HHHHHHHHHHHHHC-CCcceEEEEEecC-CCC
Confidence 46899999999997 5777777777654 444
No 32
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=21.86 E-value=54 Score=27.83 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhcCCCCCCcceEEEec
Q 024794 107 VDAMRQTVTNMIGTLPPQFFAVTVTTV 133 (262)
Q Consensus 107 ~eaM~~tV~gLLG~LP~~~F~vtItTs 133 (262)
.++|+++|..+|| +|.++.+|+.||+
T Consensus 111 ~~~m~~~ia~~L~-~~~~~V~vKAtT~ 136 (159)
T 1t0a_A 111 IEDMRQVLAADLN-ADVADINVKATTT 136 (159)
T ss_dssp HHHHHHHHHHHTT-CCGGGEEEEEECC
T ss_pred HHHHHHHHHHHhC-CCCceEEEEEecC
Confidence 6899999999997 6777888877754
No 33
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=21.20 E-value=57 Score=28.32 Aligned_cols=29 Identities=34% Similarity=0.484 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhcCCCCCCcceEEEecHHhH
Q 024794 107 VDAMRQTVTNMIGTLPPQFFAVTVTTVAENL 137 (262)
Q Consensus 107 ~eaM~~tV~gLLG~LP~~~F~vtItTsrE~L 137 (262)
.++|+++|..+|| +|.++.+|..||+ |.|
T Consensus 132 ~~~mr~~la~~L~-i~~~~VnVKATT~-E~L 160 (183)
T 3f0d_A 132 IDAMRANIAADLD-LPLDRVNVKAKTN-EKL 160 (183)
T ss_dssp HHHHHHHHHHHHT-CCGGGEEEEEECC-TTC
T ss_pred HHHHHHHHHHHHC-CCcceEEEEEecC-CCC
Confidence 7899999999998 5777888877754 444
No 34
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=21.05 E-value=57 Score=27.69 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCcceEEEec
Q 024794 106 VVDAMRQTVTNMIGTLPPQFFAVTVTTV 133 (262)
Q Consensus 106 V~eaM~~tV~gLLG~LP~~~F~vtItTs 133 (262)
-.++|+++|..+|| +|.++.+|+.||+
T Consensus 109 ~~~~m~~~ia~~L~-~~~~~V~vKAtT~ 135 (160)
T 1gx1_A 109 HIPQMRVFIAEDLG-CHMDDVNVKATTT 135 (160)
T ss_dssp GHHHHHHHHHHHTT-CCGGGEEEEEECC
T ss_pred HHHHHHHHHHHHhC-CCCceEEEEEccC
Confidence 45899999999997 5777888877765
Done!