BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024795
         (262 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P78314|3BP2_HUMAN SH3 domain-binding protein 2 OS=Homo sapiens GN=SH3BP2 PE=1 SV=2
          Length = 561

 Score = 37.0 bits (84), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 39/83 (46%)

Query: 150 WLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHG 209
           W  RF+++H  C++++  ST  SPQ +  LS    V      T  N    +    +++  
Sbjct: 46  WPLRFVIIHKRCVYYFKSSTSASPQGAFSLSGYNRVMRAAEETTSNNVFPFKIIHISKKH 105

Query: 210 LRIECSSISKIQVYSWLSALQTD 232
                S+ S+ +  SW++ L+ +
Sbjct: 106 RTWFFSASSEEERKSWMALLRRE 128


>sp|Q06649|3BP2_MOUSE SH3 domain-binding protein 2 OS=Mus musculus GN=Sh3bp2 PE=1 SV=1
          Length = 559

 Score = 36.6 bits (83), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 41/89 (46%)

Query: 150 WLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHG 209
           W  RF+++H  CI+++  ST  SPQ +  LS    V      T  N    +    +++  
Sbjct: 46  WPLRFVIIHKRCIYYFKSSTSASPQGAFSLSGYNRVMRAAEETTSNNVFPFKIIHISKKH 105

Query: 210 LRIECSSISKIQVYSWLSALQTDCKLDYE 238
                S+ S+ +  SW++ ++ +    +E
Sbjct: 106 RTWFFSASSEDERKSWMAFVRREIGHFHE 134


>sp|Q835R8|GRPE_ENTFA Protein GrpE OS=Enterococcus faecalis (strain ATCC 700802 / V583)
           GN=grpE PE=3 SV=1
          Length = 179

 Score = 32.3 bits (72), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 43/70 (61%), Gaps = 4/70 (5%)

Query: 78  GQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRSARLSGYLYIRTRWKPLPG 137
           G  +VE+ ATE+E+L++EL+++ED+    +A++ ++    ++ R    L +R R + L  
Sbjct: 22  GVSEVEVEATEIENLKAELSEMEDKFLRARAEIANMSNRNKNER---ELLVRYRSQDLGK 78

Query: 138 EP-PPIDDTD 146
           +  P ID+ +
Sbjct: 79  KILPSIDNLE 88


>sp|Q9NX02|NALP2_HUMAN NACHT, LRR and PYD domains-containing protein 2 OS=Homo sapiens
           GN=NLRP2 PE=1 SV=1
          Length = 1062

 Score = 31.6 bits (70), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 13/88 (14%)

Query: 73  VSSSDGQEKVELTATELESLRSELADLEDREAHLKAQL-EHVDEILRSARLSGYLYIRTR 131
           V  +DG++ VE+  T  +S   E+A L+  E   +  L E   + +R A L  +     +
Sbjct: 47  VDKADGKQLVEILTTHCDSYWVEMASLQVFEKMHRMDLSERAKDEVREAALKSF----NK 102

Query: 132 WKPLP-----GEPPPIDDTDVDDWLPRF 154
            KPL       E PP+   DVD+ L RF
Sbjct: 103 RKPLSLGITRKERPPL---DVDEMLERF 127


>sp|O58734|SYP_PYRHO Proline--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC 700860 /
           DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=proS PE=3
           SV=2
          Length = 480

 Score = 31.2 bits (69), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 97  ADLEDREAHLKAQLEHVDEILRSARLSGYLYIRTRWKPLPG 137
           AD ED E  +K  LE  D ++R   L+  +  R  W   PG
Sbjct: 166 ADFEDAERQIKEDLEIFDNLMRKLALAYIISKRPEWDKFPG 206


>sp|Q5VTH9|WDR78_HUMAN WD repeat-containing protein 78 OS=Homo sapiens GN=WDR78 PE=2 SV=1
          Length = 848

 Score = 31.2 bits (69), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 45  LHSHSWTRRKLKSAAVMLNMFSLRGLP--WVSSSDGQEKVELTATELESLR-----SELA 97
           L   S+ R +L S     ++  +R  P   V+  D ++ +E+  TE E+LR     + + 
Sbjct: 200 LEEPSYKRERLTS---FTDLQVIRAAPEKIVTKEDLEKNIEIILTETETLRFFDLPTVMV 256

Query: 98  DLEDREAHLKAQLEHVDEILRSARLSGYLYIRTRWKPLPGEPPPID 143
            +E  EA    Q     E+L   RL   LY+    +   G P   D
Sbjct: 257 SVESEEAEKVTQRNKNYEVLCRNRLGNDLYVERMMQTFNGAPKNKD 302


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.131    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,216,102
Number of Sequences: 539616
Number of extensions: 3886692
Number of successful extensions: 14488
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 14473
Number of HSP's gapped (non-prelim): 25
length of query: 262
length of database: 191,569,459
effective HSP length: 115
effective length of query: 147
effective length of database: 129,513,619
effective search space: 19038501993
effective search space used: 19038501993
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)