Query 024795
Match_columns 262
No_of_seqs 18 out of 20
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 07:28:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00169 PH: PH domain; Inter 98.7 2.2E-08 4.8E-13 68.1 5.1 95 122-231 3-101 (104)
2 smart00233 PH Pleckstrin homol 98.3 3E-06 6.5E-11 55.8 7.2 94 122-231 3-99 (102)
3 cd01246 PH_oxysterol_bp Oxyste 98.3 2.8E-06 6.1E-11 59.1 6.1 88 122-231 1-90 (91)
4 cd00821 PH Pleckstrin homology 98.2 2.4E-06 5.2E-11 55.9 5.0 80 147-231 13-95 (96)
5 cd01250 PH_centaurin Centaurin 98.2 9E-06 1.9E-10 56.9 7.2 90 123-231 2-93 (94)
6 cd01253 PH_beta_spectrin Beta- 98.2 1.4E-05 2.9E-10 59.0 8.2 100 122-231 1-103 (104)
7 cd01252 PH_cytohesin Cytohesin 98.1 4.5E-06 9.7E-11 64.3 4.8 79 147-231 13-111 (125)
8 cd01238 PH_Tec Tec pleckstrin 98.1 1.3E-05 2.8E-10 61.2 7.1 100 122-231 2-105 (106)
9 cd01233 Unc104 Unc-104 pleckst 98.1 5E-06 1.1E-10 62.4 4.6 81 148-231 16-96 (100)
10 cd01235 PH_SETbf Set binding f 98.1 1.5E-05 3.3E-10 57.6 6.9 94 123-231 2-99 (101)
11 cd01260 PH_CNK Connector enhan 97.8 3E-05 6.5E-10 56.5 4.7 94 122-231 2-95 (96)
12 cd01265 PH_PARIS-1 PARIS-1 ple 97.7 0.00012 2.5E-09 54.9 6.4 90 122-231 1-92 (95)
13 cd01251 PH_centaurin_alpha Cen 97.6 0.00014 3E-09 55.4 5.8 82 147-231 13-98 (103)
14 cd00900 PH-like Pleckstrin hom 97.6 0.00043 9.3E-09 45.7 7.2 79 148-231 17-98 (99)
15 cd01247 PH_GPBP Goodpasture an 97.5 0.00033 7.2E-09 52.6 6.7 88 122-231 1-90 (91)
16 cd01263 PH_anillin Anillin Ple 97.1 0.0018 3.8E-08 52.5 6.8 97 122-231 3-121 (122)
17 cd01266 PH_Gab Gab (Grb2-assoc 97.0 0.0014 2.9E-08 49.8 5.2 83 147-230 16-105 (108)
18 cd01245 PH_RasGAP_CG5898 RAS G 96.6 0.0054 1.2E-07 48.0 5.5 79 147-231 13-97 (98)
19 cd01244 PH_RasGAP_CG9209 RAS_G 96.0 0.015 3.3E-07 45.1 5.3 78 148-230 19-96 (98)
20 cd01241 PH_Akt Akt pleckstrin 96.0 0.017 3.8E-07 43.7 5.3 83 146-231 13-100 (102)
21 cd01257 PH_IRS Insulin recepto 95.8 0.023 4.9E-07 44.4 5.6 86 121-230 3-99 (101)
22 cd01236 PH_outspread Outspread 95.8 0.038 8.1E-07 43.5 6.5 80 146-230 20-101 (104)
23 cd01264 PH_melted Melted pleck 95.4 0.041 8.9E-07 43.5 5.7 83 147-231 16-99 (101)
24 cd01230 PH_EFA6 EFA6 Pleckstri 95.2 0.12 2.5E-06 41.5 7.6 106 123-237 3-115 (117)
25 PF15410 PH_9: Pleckstrin homo 93.7 0.16 3.5E-06 39.6 5.2 100 123-231 3-116 (119)
26 cd01254 PH_PLD Phospholipase D 93.3 0.24 5.2E-06 38.9 5.7 83 147-231 30-120 (121)
27 cd01219 PH_FGD FGD (faciogenit 93.0 0.25 5.4E-06 37.4 5.1 77 148-231 16-97 (101)
28 cd01249 PH_oligophrenin Oligop 91.7 0.88 1.9E-05 36.9 7.0 94 123-231 2-103 (104)
29 cd01258 PH_syntrophin Syntroph 89.3 1.4 3E-05 35.7 6.2 77 147-230 16-106 (108)
30 KOG0521 Putative GTPase activa 85.4 0.97 2.1E-05 46.6 4.1 119 85-231 223-366 (785)
31 PRK09039 hypothetical protein; 84.9 0.36 7.7E-06 44.5 0.7 100 76-185 133-249 (343)
32 PF15413 PH_11: Pleckstrin hom 84.0 3.1 6.7E-05 32.3 5.4 93 123-231 2-111 (112)
33 PF04977 DivIC: Septum formati 78.2 3.3 7.2E-05 28.9 3.5 44 83-126 20-68 (80)
34 cd01259 PH_Apbb1ip Apbb1ip (Am 77.9 2.4 5.1E-05 35.3 3.0 95 122-231 2-106 (114)
35 PF08458 PH_2: Plant pleckstri 73.4 4.8 0.0001 33.2 3.7 45 184-230 54-100 (110)
36 PF01166 TSC22: TSC-22/dip/bun 70.4 2.2 4.9E-05 32.2 1.1 30 86-119 13-42 (59)
37 KOG4797 Transcriptional regula 69.3 4.3 9.3E-05 34.4 2.6 25 85-109 65-89 (123)
38 cd01239 PH_PKD Protein kinase 67.2 14 0.00031 30.9 5.3 65 149-214 15-79 (117)
39 PF12814 Mcp5_PH: Meiotic cell 63.5 72 0.0016 25.2 8.6 106 113-230 2-118 (123)
40 cd01237 Unc112 Unc-112 pleckst 63.1 23 0.0005 28.9 5.6 80 148-231 18-101 (106)
41 PF15188 CCDC-167: Coiled-coil 62.5 8.7 0.00019 30.4 3.0 33 92-124 3-35 (85)
42 PF08657 DASH_Spc34: DASH comp 59.9 7.6 0.00016 35.3 2.6 53 54-114 162-214 (259)
43 PRK06342 transcription elongat 58.0 8.4 0.00018 32.6 2.4 40 83-122 37-85 (160)
44 KOG4571 Activating transcripti 56.6 15 0.00033 34.8 4.0 35 86-120 247-281 (294)
45 PF12852 Cupin_6: Cupin 55.6 23 0.0005 28.5 4.4 43 112-164 2-49 (186)
46 PRK13922 rod shape-determining 52.9 23 0.00049 30.8 4.3 41 85-125 74-117 (276)
47 PF13600 DUF4140: N-terminal d 50.0 15 0.00033 27.5 2.4 27 86-112 69-95 (104)
48 PRK00888 ftsB cell division pr 48.9 19 0.00042 28.4 3.0 33 81-113 28-60 (105)
49 PF10267 Tmemb_cc2: Predicted 48.7 19 0.00041 34.9 3.4 40 81-120 270-310 (395)
50 PHA03230 nuclear protein UL55; 48.1 21 0.00045 31.8 3.3 80 152-231 52-158 (180)
51 PF04537 Herpes_UL55: Herpesvi 47.3 33 0.00071 30.4 4.4 74 152-231 46-153 (169)
52 KOG0930 Guanine nucleotide exc 45.5 20 0.00044 34.9 3.1 82 146-233 273-375 (395)
53 PTZ00267 NIMA-related protein 45.1 45 0.00098 30.7 5.1 82 149-233 391-476 (478)
54 PF10805 DUF2730: Protein of u 43.7 33 0.00072 27.0 3.5 28 86-113 34-61 (106)
55 cd01224 PH_Collybistin Collybi 43.3 28 0.00061 28.5 3.1 51 181-231 52-105 (109)
56 cd01261 PH_SOS Son of Sevenles 42.1 18 0.00039 29.2 1.9 45 183-231 63-107 (112)
57 PF07321 YscO: Type III secret 41.7 37 0.00081 28.8 3.8 36 83-118 63-98 (152)
58 PF14301 DUF4376: Domain of un 41.3 71 0.0015 23.5 4.8 58 53-112 39-101 (111)
59 PF15456 Uds1: Up-regulated Du 41.1 37 0.00081 27.9 3.6 29 83-111 18-46 (124)
60 TIGR01462 greA transcription e 40.9 39 0.00084 27.6 3.6 25 99-123 47-71 (151)
61 PF11559 ADIP: Afadin- and alp 40.1 35 0.00076 27.3 3.2 39 81-119 74-112 (151)
62 PF02403 Seryl_tRNA_N: Seryl-t 39.7 27 0.00059 26.3 2.4 34 80-113 67-100 (108)
63 PLN02866 phospholipase D 39.6 40 0.00087 36.8 4.5 77 148-232 216-306 (1068)
64 PF04521 Viral_P18: ssRNA posi 39.2 27 0.00059 29.5 2.6 38 88-125 73-110 (120)
65 cd01220 PH_CDEP Chondrocyte-de 38.3 65 0.0014 24.9 4.3 75 150-231 17-95 (99)
66 PF08848 DUF1818: Domain of un 37.3 9.4 0.0002 31.9 -0.4 66 80-159 27-92 (117)
67 PF08317 Spc7: Spc7 kinetochor 37.2 34 0.00073 31.1 3.0 23 75-97 204-226 (325)
68 cd01223 PH_Vav Vav pleckstrin 37.2 40 0.00086 28.0 3.2 36 195-230 72-108 (116)
69 PF05529 Bap31: B-cell recepto 35.3 41 0.0009 27.9 3.0 33 83-115 157-189 (192)
70 PTZ00446 vacuolar sorting prot 34.8 53 0.0011 29.0 3.7 37 83-119 23-59 (191)
71 TIGR02231 conserved hypothetic 34.7 38 0.00082 32.3 3.1 43 76-118 67-109 (525)
72 PRK04406 hypothetical protein; 34.2 72 0.0016 24.2 3.9 36 89-124 27-62 (75)
73 PF06401 Alpha-2-MRAP_C: Alpha 34.1 54 0.0012 29.8 3.8 36 83-118 125-163 (214)
74 PRK14161 heat shock protein Gr 34.0 38 0.00082 29.3 2.7 35 80-114 19-53 (178)
75 TIGR02209 ftsL_broad cell divi 33.8 46 0.001 23.9 2.7 40 82-121 26-68 (85)
76 PF15408 PH_7: Pleckstrin homo 33.1 33 0.00072 28.4 2.1 77 152-231 14-95 (104)
77 PF04380 BMFP: Membrane fusoge 32.9 51 0.0011 24.9 2.9 27 86-112 49-75 (79)
78 PF14784 ECIST_Cterm: C-termin 32.6 54 0.0012 27.4 3.3 73 152-233 22-113 (126)
79 PF09372 PRANC: PRANC domain; 32.0 26 0.00057 26.2 1.3 38 92-138 41-78 (97)
80 PF07862 Nif11: Nitrogen fixat 32.0 45 0.00098 22.3 2.3 22 110-131 26-47 (49)
81 PF12958 DUF3847: Protein of u 32.0 57 0.0012 25.8 3.2 32 83-114 4-35 (86)
82 TIGR00999 8a0102 Membrane Fusi 31.6 44 0.00096 27.6 2.6 47 84-130 51-103 (265)
83 TIGR01461 greB transcription e 31.4 74 0.0016 26.6 3.9 25 99-123 50-74 (156)
84 PRK00888 ftsB cell division pr 31.4 38 0.00081 26.8 2.1 43 77-119 31-73 (105)
85 PF10046 BLOC1_2: Biogenesis o 31.2 66 0.0014 24.9 3.4 31 86-116 41-71 (99)
86 KOG4010 Coiled-coil protein TP 31.1 40 0.00088 30.8 2.5 44 79-122 36-83 (208)
87 PRK11239 hypothetical protein; 30.8 36 0.00078 31.1 2.1 26 85-110 188-213 (215)
88 PRK14158 heat shock protein Gr 30.7 47 0.001 29.3 2.8 39 76-114 36-74 (194)
89 PRK14147 heat shock protein Gr 30.5 59 0.0013 27.9 3.3 36 80-115 18-53 (172)
90 PRK05892 nucleoside diphosphat 30.0 50 0.0011 27.7 2.7 23 100-122 53-75 (158)
91 PF03836 RasGAP_C: RasGAP C-te 29.8 18 0.00038 29.4 0.0 40 83-122 47-86 (142)
92 PRK14155 heat shock protein Gr 29.7 58 0.0013 29.0 3.2 34 82-115 15-48 (208)
93 cd00890 Prefoldin Prefoldin is 29.5 41 0.00089 25.4 2.0 24 90-113 97-120 (129)
94 TIGR03214 ura-cupin putative a 29.4 1.5E+02 0.0032 26.3 5.7 85 123-210 126-212 (260)
95 COG3167 PilO Tfp pilus assembl 29.1 46 0.001 30.5 2.5 23 76-98 45-67 (211)
96 PF01920 Prefoldin_2: Prefoldi 29.0 89 0.0019 22.8 3.6 35 86-120 4-38 (106)
97 PRK14162 heat shock protein Gr 28.8 54 0.0012 28.9 2.8 40 75-114 34-73 (194)
98 PF10805 DUF2730: Protein of u 28.0 60 0.0013 25.5 2.7 33 86-118 64-96 (106)
99 PRK14143 heat shock protein Gr 27.9 50 0.0011 29.9 2.5 39 77-115 64-102 (238)
100 cd01231 PH_Lnk LNK-family Plec 27.8 1.2E+02 0.0026 25.4 4.5 70 159-230 34-105 (107)
101 PF04977 DivIC: Septum formati 27.4 44 0.00096 23.2 1.7 37 82-118 26-62 (80)
102 PF08286 Spc24: Spc24 subunit 27.2 17 0.00037 28.6 -0.5 28 85-112 18-45 (118)
103 PF04508 Pox_A_type_inc: Viral 26.8 36 0.00077 21.7 1.0 16 87-102 1-16 (23)
104 PF14257 DUF4349: Domain of un 26.4 92 0.002 27.0 3.8 45 85-129 160-204 (262)
105 PF04099 Sybindin: Sybindin-li 26.3 37 0.0008 27.7 1.3 16 200-215 2-18 (142)
106 PF09325 Vps5: Vps5 C terminal 26.3 87 0.0019 25.8 3.5 34 86-119 162-195 (236)
107 PF04380 BMFP: Membrane fusoge 26.1 36 0.00079 25.6 1.2 38 68-109 42-79 (79)
108 PRK02793 phi X174 lysis protei 26.0 1.1E+02 0.0024 22.9 3.7 38 87-124 22-59 (72)
109 cd06155 eu_AANH_C_1 A group of 26.0 65 0.0014 24.2 2.5 22 102-123 24-45 (101)
110 PF04728 LPP: Lipoprotein leuc 25.9 60 0.0013 24.2 2.2 34 80-113 17-50 (56)
111 PRK02119 hypothetical protein; 25.9 82 0.0018 23.7 3.0 33 89-121 25-57 (73)
112 cd04776 HTH_GnyR Helix-Turn-He 25.8 64 0.0014 25.4 2.5 28 90-117 83-110 (118)
113 PF08317 Spc7: Spc7 kinetochor 25.5 67 0.0015 29.2 2.9 35 84-118 234-268 (325)
114 PF01025 GrpE: GrpE; InterPro 25.1 39 0.00084 27.0 1.2 37 78-114 9-45 (165)
115 PRK01885 greB transcription el 25.0 88 0.0019 26.2 3.3 24 99-122 52-75 (157)
116 TIGR01242 26Sp45 26S proteasom 24.6 1.2E+02 0.0025 27.4 4.2 44 84-127 3-46 (364)
117 PF13600 DUF4140: N-terminal d 24.6 1.1E+02 0.0023 23.0 3.4 38 76-113 66-103 (104)
118 PF15406 PH_6: Pleckstrin homo 24.6 1.4E+02 0.0031 25.0 4.4 63 159-231 48-111 (112)
119 PF04201 TPD52: Tumour protein 24.3 71 0.0015 28.1 2.7 21 82-102 24-44 (162)
120 PRK00295 hypothetical protein; 24.3 1.5E+02 0.0032 22.0 4.0 35 87-121 19-53 (68)
121 cd01242 PH_ROK Rok (Rho- assoc 24.3 1E+02 0.0022 25.7 3.5 53 149-206 19-82 (112)
122 PF11853 DUF3373: Protein of u 24.1 46 0.001 33.3 1.8 13 126-138 70-82 (489)
123 PRK11546 zraP zinc resistance 24.0 67 0.0015 27.5 2.5 26 72-97 81-106 (143)
124 smart00338 BRLZ basic region l 23.7 56 0.0012 23.0 1.7 28 86-113 32-59 (65)
125 KOG3850 Predicted membrane pro 23.7 85 0.0018 31.6 3.4 41 80-120 317-358 (455)
126 cd04779 HTH_MerR-like_sg4 Heli 23.5 99 0.0022 25.3 3.3 40 80-119 74-113 (134)
127 PF11382 DUF3186: Protein of u 23.3 99 0.0022 28.3 3.6 34 86-119 38-71 (308)
128 PF09726 Macoilin: Transmembra 23.2 55 0.0012 33.7 2.1 33 84-116 422-454 (697)
129 PRK14154 heat shock protein Gr 23.1 72 0.0016 28.6 2.6 34 81-114 53-86 (208)
130 COG1792 MreC Cell shape-determ 23.0 1E+02 0.0023 28.0 3.6 67 85-161 71-141 (284)
131 PF08690 GET2: GET complex sub 22.9 93 0.002 29.0 3.3 29 83-116 1-34 (302)
132 PRK09039 hypothetical protein; 22.9 64 0.0014 30.0 2.3 11 107-117 150-160 (343)
133 PRK02119 hypothetical protein; 22.8 1.6E+02 0.0034 22.2 4.0 30 88-117 3-32 (73)
134 KOG3751 Growth factor receptor 22.7 85 0.0018 32.7 3.3 78 149-230 332-421 (622)
135 PF04889 Cwf_Cwc_15: Cwf15/Cwc 22.6 99 0.0021 28.0 3.4 51 83-133 149-205 (244)
136 PRK00226 greA transcription el 22.4 1.3E+02 0.0029 24.5 3.8 23 100-122 53-75 (157)
137 PRK14144 heat shock protein Gr 22.3 78 0.0017 28.2 2.6 37 78-114 43-79 (199)
138 PRK05771 V-type ATP synthase s 22.2 2E+02 0.0044 28.4 5.6 76 59-134 194-283 (646)
139 PRK00846 hypothetical protein; 22.1 1.8E+02 0.004 22.6 4.3 38 87-124 27-64 (77)
140 cd07596 BAR_SNX The Bin/Amphip 21.9 1.3E+02 0.0029 23.8 3.6 33 86-118 144-176 (218)
141 KOG4001 Axonemal dynein light 21.9 63 0.0014 30.3 2.0 18 96-113 237-254 (259)
142 PF15456 Uds1: Up-regulated Du 21.8 1.2E+02 0.0026 25.0 3.4 67 53-119 49-121 (124)
143 COG3879 Uncharacterized protei 21.7 1.1E+02 0.0023 28.5 3.4 31 91-121 54-84 (247)
144 cd01256 PH_dynamin Dynamin ple 21.6 84 0.0018 26.4 2.5 69 152-228 21-100 (110)
145 PF00170 bZIP_1: bZIP transcri 21.5 68 0.0015 22.6 1.7 23 86-108 39-61 (64)
146 PF07106 TBPIP: Tat binding pr 21.3 96 0.0021 25.3 2.8 27 86-112 78-104 (169)
147 KOG1821 Uncharacterized conser 21.1 60 0.0013 33.2 1.9 30 82-111 628-657 (662)
148 COG3167 PilO Tfp pilus assembl 21.1 66 0.0014 29.5 2.0 48 85-132 71-125 (211)
149 TIGR00219 mreC rod shape-deter 21.1 2E+02 0.0043 26.1 5.0 65 85-160 71-140 (283)
150 COG1342 Predicted DNA-binding 21.0 79 0.0017 26.1 2.2 51 71-121 21-74 (99)
151 PRK14127 cell division protein 20.9 1.1E+02 0.0023 25.1 3.0 41 82-122 39-97 (109)
152 TIGR01834 PHA_synth_III_E poly 20.8 96 0.0021 29.6 3.0 30 85-114 287-316 (320)
153 PF14357 DUF4404: Domain of un 20.8 91 0.002 23.9 2.4 33 86-118 3-35 (85)
154 PF05384 DegS: Sensor protein 20.7 1.2E+02 0.0026 26.1 3.3 39 83-121 23-61 (159)
155 PRK01402 hslO Hsp33-like chape 20.5 23 0.0005 33.1 -1.1 49 202-254 267-315 (328)
156 cd04790 HTH_Cfa-like_unk Helix 20.4 18 0.00039 30.3 -1.6 66 47-120 37-107 (172)
157 PRK14159 heat shock protein Gr 20.3 1.1E+02 0.0023 26.7 3.0 32 83-114 26-57 (176)
158 PF06248 Zw10: Centromere/kine 20.0 95 0.0021 30.2 2.9 46 75-121 71-116 (593)
159 PRK06330 transcript cleavage f 20.0 1.9E+02 0.004 30.6 5.1 57 66-122 551-637 (718)
No 1
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.72 E-value=2.2e-08 Score=68.09 Aligned_cols=95 Identities=29% Similarity=0.483 Sum_probs=81.3
Q ss_pred ccceEEEeeecccCCCCCCCCCCCCcccccceeEeeecceeEeEeeeC---CCCCCCcceeehhhhccCCCCcc-cCCCc
Q 024795 122 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLST---DLSPQDSTVLSDVVEVASLPSIT-RENGE 197 (262)
Q Consensus 122 lsgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~st---dlsPQdStllsDIVEVg~lP~f~-rEdge 197 (262)
..|||+.++ .-...|=.||+||.|.+|+||-..+ +..|...+-|.++ +|...++.. ....+
T Consensus 3 ~~G~L~~~~--------------~~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~ 67 (104)
T PF00169_consen 3 KEGWLLKKS--------------SSRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKK 67 (104)
T ss_dssp EEEEEEEEE--------------SSSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSS
T ss_pred EEEEEEEEC--------------CCCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccC
Confidence 479999999 2345799999999999999999999 7999999999998 887777764 24457
Q ss_pred eeEEEEEeeecceeeeecccceeehhhHHHHhhc
Q 024795 198 MQYCFYILTRHGLRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 198 ~~yaFyIlTrhGLR~ECSS~skiQVDsWL~al~~ 231 (262)
..++|.|.+..|-.|.....++-+...|+.+|+.
T Consensus 68 ~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~ 101 (104)
T PF00169_consen 68 RKNCFEITTPNGKSYLFSAESEEERKRWIQAIQK 101 (104)
T ss_dssp SSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHH
Confidence 8899999999997777777788999999999974
No 2
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.34 E-value=3e-06 Score=55.80 Aligned_cols=94 Identities=24% Similarity=0.418 Sum_probs=73.1
Q ss_pred ccceEEEeeecccCCCCCCCCCCCCcccccceeEeeecceeEeEeeeCC---CCCCCcceeehhhhccCCCCcccCCCce
Q 024795 122 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTD---LSPQDSTVLSDVVEVASLPSITRENGEM 198 (262)
Q Consensus 122 lsgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~std---lsPQdStllsDIVEVg~lP~f~rEdge~ 198 (262)
..|||+.++.= .-..|-+||++|.+.|+.||-...+ .+|...+.+.++ .|...+.... +..
T Consensus 3 ~~G~l~~~~~~-------------~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~--~~~ 66 (102)
T smart00233 3 KEGWLYKKSGG-------------KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDS--AKK 66 (102)
T ss_pred eeEEEEEeCCC-------------ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCcc--CCC
Confidence 57999887541 3346999999999999999998877 788888888887 7776665432 345
Q ss_pred eEEEEEeeecceeeeecccceeehhhHHHHhhc
Q 024795 199 QYCFYILTRHGLRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 199 ~yaFyIlTrhGLR~ECSS~skiQVDsWL~al~~ 231 (262)
.++|.|.+..+-.|.....+......|+.+|+.
T Consensus 67 ~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~ 99 (102)
T smart00233 67 PHCFEIKTADRRSYLLQAESEEEREEWVDALRK 99 (102)
T ss_pred ceEEEEEecCCceEEEEcCCHHHHHHHHHHHHH
Confidence 689999999995565555667788899999874
No 3
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.26 E-value=2.8e-06 Score=59.14 Aligned_cols=88 Identities=24% Similarity=0.457 Sum_probs=68.4
Q ss_pred ccceEEEeeecccCCCCCCCCCCCCcccccceeEeeecceeEeEeeeCCC--CCCCcceeehhhhccCCCCcccCCCcee
Q 024795 122 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDL--SPQDSTVLSDVVEVASLPSITRENGEMQ 199 (262)
Q Consensus 122 lsgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~stdl--sPQdStllsDIVEVg~lP~f~rEdge~~ 199 (262)
++|||+-++.- ...|-.||+||+|.+++||---.+. .|.+++.|.+... .++....
T Consensus 1 ~~G~L~k~~~~--------------~~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~--------~~~~~~~ 58 (91)
T cd01246 1 VEGWLLKWTNY--------------LKGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVI--------SEDDSDD 58 (91)
T ss_pred CeEEEEEeccc--------------CCCceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEE--------EECCCCC
Confidence 46888876531 2579999999999999999998887 8999888887531 1112227
Q ss_pred EEEEEeeecceeeeecccceeehhhHHHHhhc
Q 024795 200 YCFYILTRHGLRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 200 yaFyIlTrhGLR~ECSS~skiQVDsWL~al~~ 231 (262)
++|.|.|.+|=.|.....++-....|+.||+.
T Consensus 59 ~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 59 KCFTIDTGGDKTLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred cEEEEEcCCCCEEEEECCCHHHHHHHHHHHHh
Confidence 89999999877777777777789999999974
No 4
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.24 E-value=2.4e-06 Score=55.91 Aligned_cols=80 Identities=28% Similarity=0.453 Sum_probs=64.8
Q ss_pred cccccceeEeeecceeEeEeeeCC---CCCCCcceeehhhhccCCCCcccCCCceeEEEEEeeecceeeeecccceeehh
Q 024795 147 VDDWLPRFIVLHGSCIFFYLLSTD---LSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVY 223 (262)
Q Consensus 147 VDDWlpRFVVl~G~cif~yL~std---lsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVD 223 (262)
...|-+|+++|.+.++++|-...+ .+|+..+.|.+ ++|...+.-. ...++|.|.+.++-.|.-...++....
T Consensus 13 ~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~----~~~~~f~i~~~~~~~~~~~~~s~~~~~ 87 (96)
T cd00821 13 RKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDS----GRKNCFEIRTPDGRSYLLQAESEEERE 87 (96)
T ss_pred hCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcC----CCCcEEEEecCCCcEEEEEeCCHHHHH
Confidence 678999999999999999999988 79999999998 7777665433 456899999887655554445577899
Q ss_pred hHHHHhhc
Q 024795 224 SWLSALQT 231 (262)
Q Consensus 224 sWL~al~~ 231 (262)
.|+.+|+.
T Consensus 88 ~W~~~l~~ 95 (96)
T cd00821 88 EWIEALQS 95 (96)
T ss_pred HHHHHHhc
Confidence 99999873
No 5
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.18 E-value=9e-06 Score=56.91 Aligned_cols=90 Identities=21% Similarity=0.339 Sum_probs=64.5
Q ss_pred cceEEEeeecccCCCCCCCCCCCCcccccceeEeeecceeEeEeeeCC--CCCCCcceeehhhhccCCCCcccCCCceeE
Q 024795 123 SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTD--LSPQDSTVLSDVVEVASLPSITRENGEMQY 200 (262)
Q Consensus 123 sgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~std--lsPQdStllsDIVEVg~lP~f~rEdge~~y 200 (262)
.|||+-++.-. ...|-+||+||.+.+++||.-..+ ..|..++-|.+. -|...| +.++-.+
T Consensus 2 ~G~L~kk~~~~-------------~~~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~-~v~~~~----~~~~~~~ 63 (94)
T cd01250 2 QGYLYKRSSKS-------------NKEWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRC-TVRHNG----KQPDRRF 63 (94)
T ss_pred cceEEEECCCc-------------CCCceEEEEEEeCCeEEEEcCCcccccccceEEeccce-EEecCc----cccCCce
Confidence 58998877221 467999999999999999987776 677777777643 132222 2224678
Q ss_pred EEEEeeecceeeeecccceeehhhHHHHhhc
Q 024795 201 CFYILTRHGLRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 201 aFyIlTrhGLR~ECSS~skiQVDsWL~al~~ 231 (262)
+|.|.|...--+-|+ .+.-....|+.||+.
T Consensus 64 ~f~i~~~~~~~~f~a-~s~~~~~~Wi~al~~ 93 (94)
T cd01250 64 CFEVISPTKTWHFQA-DSEEERDDWISAIQE 93 (94)
T ss_pred EEEEEcCCcEEEEEC-CCHHHHHHHHHHHhc
Confidence 999998874444555 555588999999974
No 6
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.16 E-value=1.4e-05 Score=59.04 Aligned_cols=100 Identities=16% Similarity=0.231 Sum_probs=66.8
Q ss_pred ccceEEEeeecccCCCCCCCCCCCCcccccceeEeeecceeEeEeeeCCC-CCCCcceeehh--hhccCCCCcccCCCce
Q 024795 122 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDL-SPQDSTVLSDV--VEVASLPSITRENGEM 198 (262)
Q Consensus 122 lsgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~stdl-sPQdStllsDI--VEVg~lP~f~rEdge~ 198 (262)
+.|||+.+..|.+. |--+. .-.|-.||+||+|..|+||--.... .+.+++..-+| +.|...++. .+-
T Consensus 1 ~~g~l~rk~~~~~~-g~~~~-----~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~----~k~ 70 (104)
T cd01253 1 MEGSLERKHELESG-GKKAS-----NRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDY----TKK 70 (104)
T ss_pred CCceEeEEEEeecC-CcccC-----CCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCc----ccC
Confidence 47999999999987 44432 6789999999999999999754432 11122111111 222222222 234
Q ss_pred eEEEEEeeecceeeeecccceeehhhHHHHhhc
Q 024795 199 QYCFYILTRHGLRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 199 ~yaFyIlTrhGLR~ECSS~skiQVDsWL~al~~ 231 (262)
.++|.|.+..|-.|.=+..+.-.+..|+.||++
T Consensus 71 ~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 71 KHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred ceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence 589999988886665555566689999999975
No 7
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.10 E-value=4.5e-06 Score=64.30 Aligned_cols=79 Identities=18% Similarity=0.536 Sum_probs=63.2
Q ss_pred cccccceeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCCCcccCCCceeEEEEEeeecc-----------------
Q 024795 147 VDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHG----------------- 209 (262)
Q Consensus 147 VDDWlpRFVVl~G~cif~yL~stdlsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhG----------------- 209 (262)
+-.|-.||+||.+.|++||--.+|-.|.+++.|.++. |...+. ...+++|.|.+..+
T Consensus 13 ~~~WkkRwfvL~~~~L~yyk~~~~~~~~g~I~L~~~~-v~~~~~-----~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~ 86 (125)
T cd01252 13 VKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENVS-IREVED-----PSKPFCFELFSPSDKQQIKACKTESDGRVVE 86 (125)
T ss_pred CCCeEeEEEEEECCEEEEEcCCCCCCceEEEECCCcE-EEEccc-----CCCCeeEEEECCccccccccccccccccccc
Confidence 3679999999999999999888999999999999743 444432 34678998887665
Q ss_pred ---eeeeecccceeehhhHHHHhhc
Q 024795 210 ---LRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 210 ---LR~ECSS~skiQVDsWL~al~~ 231 (262)
-.|.++..++-+...|+.||+.
T Consensus 87 ~~~~~~~~~A~s~~e~~~Wi~al~~ 111 (125)
T cd01252 87 GNHSVYRISAANDEEMDEWIKSIKA 111 (125)
T ss_pred cCceEEEEECCCHHHHHHHHHHHHH
Confidence 3566777788899999999975
No 8
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=98.09 E-value=1.3e-05 Score=61.20 Aligned_cols=100 Identities=19% Similarity=0.200 Sum_probs=70.4
Q ss_pred ccceEEEeeecccCCCCCCCCCCCCcccccceeEeeecceeEeEeeeCC--CCCCCcceeehhhhccCCCCccc--CCCc
Q 024795 122 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTD--LSPQDSTVLSDVVEVASLPSITR--ENGE 197 (262)
Q Consensus 122 lsgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~std--lsPQdStllsDIVEVg~lP~f~r--Edge 197 (262)
..|||+-|..=.-.. -...|-.|++||.+.||+||=...| -.|-+++-|.++..|-..+.-.. -..+
T Consensus 2 k~g~l~Kr~~~~~~~---------~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~ 72 (106)
T cd01238 2 LESILVKRSQQKKKT---------SPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPER 72 (106)
T ss_pred cceeeeeeccCCCCC---------CCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccc
Confidence 468999886322222 2347999999999999999977666 47899999998744433322221 1123
Q ss_pred eeEEEEEeeecceeeeecccceeehhhHHHHhhc
Q 024795 198 MQYCFYILTRHGLRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 198 ~~yaFyIlTrhGLR~ECSS~skiQVDsWL~al~~ 231 (262)
..|+|=|.|-. =.|.+...++-+-+.|+.||+.
T Consensus 73 ~~~~F~i~t~~-r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 73 FKYPFQVVHDE-GTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred cCccEEEEeCC-CeEEEEcCCHHHHHHHHHHHHh
Confidence 46899888854 3566667788899999999973
No 9
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.08 E-value=5e-06 Score=62.36 Aligned_cols=81 Identities=21% Similarity=0.301 Sum_probs=61.0
Q ss_pred ccccceeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCCCcccCCCceeEEEEEeeecceeeeecccceeehhhHHH
Q 024795 148 DDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVYSWLS 227 (262)
Q Consensus 148 DDWlpRFVVl~G~cif~yL~stdlsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVDsWL~ 227 (262)
--|-.||+||++.+++||-..+|-.|...+.|.++ +|-..|.-.+-.| -.++|.|.|.+-- |..+..++-+..+|+.
T Consensus 16 k~WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~~~-~v~~~~~~~~~~~-~~~~F~I~t~~rt-~~~~A~s~~e~~~Wi~ 92 (100)
T cd01233 16 SGWTRRFVVVRRPYLHIYRSDKDPVERGVINLSTA-RVEHSEDQAAMVK-GPNTFAVCTKHRG-YLFQALSDKEMIDWLY 92 (100)
T ss_pred CCcEEEEEEEECCEEEEEccCCCccEeeEEEeccc-EEEEccchhhhcC-CCcEEEEECCCCE-EEEEcCCHHHHHHHHH
Confidence 57999999999999999999999999999999965 3333322211111 2579999887554 6666666779999999
Q ss_pred Hhhc
Q 024795 228 ALQT 231 (262)
Q Consensus 228 al~~ 231 (262)
||++
T Consensus 93 ai~~ 96 (100)
T cd01233 93 ALNP 96 (100)
T ss_pred Hhhh
Confidence 9975
No 10
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=98.08 E-value=1.5e-05 Score=57.56 Aligned_cols=94 Identities=21% Similarity=0.318 Sum_probs=63.6
Q ss_pred cceEEEeeecccCCCCCCCCCCCCcccccceeEeee--cceeEeEeeeCCCCCCCcceeehhhhccC-CCCcc-cCCCce
Q 024795 123 SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLH--GSCIFFYLLSTDLSPQDSTVLSDVVEVAS-LPSIT-RENGEM 198 (262)
Q Consensus 123 sgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~--G~cif~yL~stdlsPQdStllsDIVEVg~-lP~f~-rEdge~ 198 (262)
+|||+-+.. .+..|-.||+||. +.+++||-..+|-.|.+++-|.++..|-. .|+.. +.+...
T Consensus 2 ~G~L~K~g~--------------~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~ 67 (101)
T cd01235 2 EGYLYKRGA--------------LLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMGAPKHTSR 67 (101)
T ss_pred eEEEEEcCC--------------CCCCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCCCCCCCCCC
Confidence 588887652 2578999999999 45999999889999999999999766654 23322 222233
Q ss_pred eEEEEEeeecceeeeecccceeehhhHHHHhhc
Q 024795 199 QYCFYILTRHGLRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 199 ~yaFyIlTrhGLR~ECSS~skiQVDsWL~al~~ 231 (262)
.+.|-|.| ++=.|.=...++-..+.|+.||+.
T Consensus 68 ~~~f~i~t-~~r~~~~~a~s~~e~~~Wi~ai~~ 99 (101)
T cd01235 68 KGFFDLKT-SKRTYNFLAENINEAQRWKEKIQQ 99 (101)
T ss_pred ceEEEEEe-CCceEEEECCCHHHHHHHHHHHHh
Confidence 44454444 443344334444578889999974
No 11
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=97.83 E-value=3e-05 Score=56.50 Aligned_cols=94 Identities=22% Similarity=0.417 Sum_probs=67.2
Q ss_pred ccceEEEeeecccCCCCCCCCCCCCcccccceeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCCCcccCCCceeEE
Q 024795 122 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYC 201 (262)
Q Consensus 122 lsgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~stdlsPQdStllsDIVEVg~lP~f~rEdge~~ya 201 (262)
..|||+-++- .|. .-+.-|-.||+||.|.++|||---+|-.|...+.|... .|-.. .+ .+..|+
T Consensus 2 ~~GwL~kk~~----~~g------~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~~-~v~~~----~~-~~k~~~ 65 (96)
T cd01260 2 CDGWLWKRKK----PGG------FMGQKWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSGF-TIESA----KE-VKKKYA 65 (96)
T ss_pred ceeEEEEecC----CCC------ccccCceeEEEEEECCEEEEECCCCCCccceEEEccCC-EEEEc----hh-cCCceE
Confidence 4689998861 111 13567999999999999999999999999999888763 23222 12 336789
Q ss_pred EEEeeecceeeeecccceeehhhHHHHhhc
Q 024795 202 FYILTRHGLRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 202 FyIlTrhGLR~ECSS~skiQVDsWL~al~~ 231 (262)
|-|.|...=.|.=+..++-.+..|+.||+.
T Consensus 66 F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 66 FKVCHPVYKSFYFAAETLDDLSQWVNHLIT 95 (96)
T ss_pred EEECCCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 999877643344444556688999999974
No 12
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.71 E-value=0.00012 Score=54.88 Aligned_cols=90 Identities=26% Similarity=0.335 Sum_probs=66.1
Q ss_pred ccceEEEeeecccCCCCCCCCCCCCcccccceeEeeec--ceeEeEeeeCCCCCCCcceeehhhhccCCCCcccCCCcee
Q 024795 122 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHG--SCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQ 199 (262)
Q Consensus 122 lsgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~G--~cif~yL~stdlsPQdStllsDIVEVg~lP~f~rEdge~~ 199 (262)
|+|||+-+. |.- -+--|-.||+||.+ .-+|||=-..|..|.+++-|.+++.+-. .++ ..
T Consensus 1 l~GyL~K~g------~~~------~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~-----~~~--~~ 61 (95)
T cd01265 1 LCGYLHKIE------GKG------PLRGRRSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYD-----PRE--EK 61 (95)
T ss_pred CcccEEEec------CCC------CCcCceeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcC-----CCC--CC
Confidence 679998764 111 16679999999974 4577776668999999999998764421 111 25
Q ss_pred EEEEEeeecceeeeecccceeehhhHHHHhhc
Q 024795 200 YCFYILTRHGLRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 200 yaFyIlTrhGLR~ECSS~skiQVDsWL~al~~ 231 (262)
+.|-|.|..- -|.-...|+-+.+.|+.||+.
T Consensus 62 ~~F~i~t~~r-~y~l~A~s~~e~~~Wi~al~~ 92 (95)
T cd01265 62 GRFEIHSNNE-VIALKASSDKQMNYWLQALQS 92 (95)
T ss_pred CEEEEEcCCc-EEEEECCCHHHHHHHHHHHHh
Confidence 7899988654 477777888899999999974
No 13
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=97.63 E-value=0.00014 Score=55.36 Aligned_cols=82 Identities=18% Similarity=0.317 Sum_probs=63.9
Q ss_pred cccccceeEeeecceeEeEeeeCCCCCCCcceeehhh---hcc-CCCCcccCCCceeEEEEEeeecceeeeecccceeeh
Q 024795 147 VDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVV---EVA-SLPSITRENGEMQYCFYILTRHGLRIECSSISKIQV 222 (262)
Q Consensus 147 VDDWlpRFVVl~G~cif~yL~stdlsPQdStllsDIV---EVg-~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQV 222 (262)
+.-|=-||.||+|..+|||=...|..|.+.+.|..+. +|. .+|.-. ++...|+|-|.|- +=.|..+-.++-+.
T Consensus 13 ~k~wkkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~--~~~~~~~F~i~t~-~Rty~l~a~s~~e~ 89 (103)
T cd01251 13 TEGFKKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGT--QGNHWYGVTLVTP-ERKFLFACETEQDR 89 (103)
T ss_pred CCCceeEEEEEeCCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccc--cccccceEEEEeC-CeEEEEECCCHHHH
Confidence 3569999999999999999777899999999998654 231 123211 3445579998875 77898888899999
Q ss_pred hhHHHHhhc
Q 024795 223 YSWLSALQT 231 (262)
Q Consensus 223 DsWL~al~~ 231 (262)
+.|+.||+.
T Consensus 90 ~~Wi~ai~~ 98 (103)
T cd01251 90 REWIAAFQN 98 (103)
T ss_pred HHHHHHHHH
Confidence 999999984
No 14
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=97.60 E-value=0.00043 Score=45.66 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=59.0
Q ss_pred ccccceeEeeecceeEeEeeeCCCCCC-CcceeehhhhccCCCCcccCCCceeEEEEEeeec--ceeeeecccceeehhh
Q 024795 148 DDWLPRFIVLHGSCIFFYLLSTDLSPQ-DSTVLSDVVEVASLPSITRENGEMQYCFYILTRH--GLRIECSSISKIQVYS 224 (262)
Q Consensus 148 DDWlpRFVVl~G~cif~yL~stdlsPQ-dStllsDIVEVg~lP~f~rEdge~~yaFyIlTrh--GLR~ECSS~skiQVDs 224 (262)
..|-+|+++|.+.+++||-...+-.+- ....+.++. |...+.-. +..++|.|.+.. +-.+.-...++-....
T Consensus 17 ~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~----~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~ 91 (99)
T cd00900 17 KRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGS----DDPNCFAIVTKDRGRRVFVFQADSEEEAQE 91 (99)
T ss_pred cCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceE-EEECCCCC----CCCceEEEECCCCCcEEEEEEcCCHHHHHH
Confidence 579999999999999999988887765 456666655 65544322 456899999885 5555555556678899
Q ss_pred HHHHhhc
Q 024795 225 WLSALQT 231 (262)
Q Consensus 225 WL~al~~ 231 (262)
|+.+|+.
T Consensus 92 W~~al~~ 98 (99)
T cd00900 92 WVEALQQ 98 (99)
T ss_pred HHHHHhc
Confidence 9999863
No 15
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=97.54 E-value=0.00033 Score=52.65 Aligned_cols=88 Identities=17% Similarity=0.283 Sum_probs=65.8
Q ss_pred ccceEEEeeecccCCCCCCCCCCCCcccccceeEeeecceeEeEeeeCC--CCCCCcceeehhhhccCCCCcccCCCcee
Q 024795 122 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTD--LSPQDSTVLSDVVEVASLPSITRENGEMQ 199 (262)
Q Consensus 122 lsgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~std--lsPQdStllsDIVEVg~lP~f~rEdge~~ 199 (262)
++|||+-++.. +.-|=+||.||++.+++||---.| ..|.+++-|+..+-+.. +.+ .
T Consensus 1 ~~G~L~K~~~~--------------~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~------~~~--~ 58 (91)
T cd01247 1 TNGVLSKWTNY--------------INGWQDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAH------EFD--E 58 (91)
T ss_pred CceEEEEeccc--------------cCCCceEEEEEECCEEEEEecCccCcCCCcEEEECcccEEEcC------CCC--C
Confidence 46888876632 456999999999999999988766 45889999987542211 222 3
Q ss_pred EEEEEeeecceeeeecccceeehhhHHHHhhc
Q 024795 200 YCFYILTRHGLRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 200 yaFyIlTrhGLR~ECSS~skiQVDsWL~al~~ 231 (262)
..|-|.+..+=.|.=...++-+.+.|+.||+.
T Consensus 59 ~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 59 NRFDISVNENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred CEEEEEeCCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 67888776666677777788889999999974
No 16
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.11 E-value=0.0018 Score=52.49 Aligned_cols=97 Identities=22% Similarity=0.300 Sum_probs=63.7
Q ss_pred ccceEEEeeecccCCCCCCCCCCCCcccccceeEeeecceeEeEeeeCC---CCCCCcceeehhhhccCCCCcccCCCce
Q 024795 122 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTD---LSPQDSTVLSDVVEVASLPSITRENGEM 198 (262)
Q Consensus 122 lsgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~std---lsPQdStllsDIVEVg~lP~f~rEdge~ 198 (262)
.+|||.+-- =+ ..+..|=+||.||+|.||+||-.-.| -.|.+++-|.+..-.-. ..-.++.---
T Consensus 3 ~~GfL~~~q----~~--------~~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v-~~~~r~~c~R 69 (122)
T cd01263 3 YHGFLTMFE----DT--------SGFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEG-ASAVRDICAR 69 (122)
T ss_pred cceeEEEEe----cc--------CCCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCccccc-ccCChhhcCC
Confidence 368998754 11 26789999999999999999987777 56778887777543221 1112333345
Q ss_pred eEEEEEeeecce-------------------eeeecccceeehhhHHHHhhc
Q 024795 199 QYCFYILTRHGL-------------------RIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 199 ~yaFyIlTrhGL-------------------R~ECSS~skiQVDsWL~al~~ 231 (262)
.++|.|-+.|.- ++-=|--++-..+.|+.||+.
T Consensus 70 p~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 70 PNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred CCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhc
Confidence 568888543322 122233556677899999973
No 17
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=97.03 E-value=0.0014 Score=49.76 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=60.6
Q ss_pred cccccceeEeeecce-------eEeEeeeCCCCCCCcceeehhhhccCCCCcccCCCceeEEEEEeeecceeeeecccce
Q 024795 147 VDDWLPRFIVLHGSC-------IFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISK 219 (262)
Q Consensus 147 VDDWlpRFVVl~G~c-------if~yL~stdlsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~sk 219 (262)
...|=.||+||++.. ++||=-..|-.|.+++.|.++.+|..=......+....|.|.|.|-+ =.|.-...++
T Consensus 16 ~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~-r~y~l~A~s~ 94 (108)
T cd01266 16 RTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIV-RDLYLVAKNE 94 (108)
T ss_pred ccCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccccccCcccceEEEEEeCC-ccEEEEECCH
Confidence 468999999999865 58887778899999999999877632111122222345789888743 2466666777
Q ss_pred eehhhHHHHhh
Q 024795 220 IQVYSWLSALQ 230 (262)
Q Consensus 220 iQVDsWL~al~ 230 (262)
-.++.|+++|+
T Consensus 95 ee~~~Wi~~I~ 105 (108)
T cd01266 95 EEMTLWVNCIC 105 (108)
T ss_pred HHHHHHHHHHH
Confidence 79999999995
No 18
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.57 E-value=0.0054 Score=47.98 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=62.0
Q ss_pred cccccceeEeeec----ceeEeEeeeCCCCCCCcceeehhhhccCCCCcccCCCceeEEEEEeeecc--eeeeeccccee
Q 024795 147 VDDWLPRFIVLHG----SCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHG--LRIECSSISKI 220 (262)
Q Consensus 147 VDDWlpRFVVl~G----~cif~yL~stdlsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhG--LR~ECSS~ski 220 (262)
+--|=-|++||+| +|++||=..+|..|=|-+.|.++ -|-.+.. .--|+ .|||=|.+..+ .-|-|.+. .
T Consensus 13 ~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~-~V~~v~d--s~~~r-~~cFel~~~~~~~~y~~~a~~--~ 86 (98)
T cd01245 13 TKLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDA-YLYPVHD--SLFGR-PNCFQIVERALPTVYYSCRSS--E 86 (98)
T ss_pred ccccceeEEEEecCCCCceEEEEcCCCCCCccceeecccc-EEEEccc--cccCC-CeEEEEecCCCCeEEEEeCCH--H
Confidence 5678899999999 99999999999999988888777 4443321 11133 59999998877 66788877 8
Q ss_pred ehhhHHHHhhc
Q 024795 221 QVYSWLSALQT 231 (262)
Q Consensus 221 QVDsWL~al~~ 231 (262)
+-|.|+.+|+.
T Consensus 87 er~~Wi~~l~~ 97 (98)
T cd01245 87 ERDKWIESLQA 97 (98)
T ss_pred HHHHHHHHHhc
Confidence 89999999974
No 19
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.02 E-value=0.015 Score=45.07 Aligned_cols=78 Identities=12% Similarity=0.150 Sum_probs=59.3
Q ss_pred ccccceeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCCCcccCCCceeEEEEEeeecceeeeecccceeehhhHHH
Q 024795 148 DDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVYSWLS 227 (262)
Q Consensus 148 DDWlpRFVVl~G~cif~yL~stdlsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVDsWL~ 227 (262)
..|=-|++||.+..|+||= .-.-.|-+++-|++|.=|-.+.+-.. +..|+|=|.|--+ -|.+...++.+-+.|++
T Consensus 19 ~n~KkRwF~Lt~~~L~Y~k-~~~~~~~g~I~L~~i~~ve~v~~~~~---~~~~~fqivt~~r-~~yi~a~s~~E~~~Wi~ 93 (98)
T cd01244 19 LHFKKRYFQLTTTHLSWAK-DVQCKKSALIKLAAIKGTEPLSDKSF---VNVDIITIVCEDD-TMQLQFEAPVEATDWLN 93 (98)
T ss_pred cCCceeEEEECCCEEEEEC-CCCCceeeeEEccceEEEEEcCCccc---CCCceEEEEeCCC-eEEEECCCHHHHHHHHH
Confidence 5899999999999999995 34467888999999876544443211 1248999988654 56777777889999999
Q ss_pred Hhh
Q 024795 228 ALQ 230 (262)
Q Consensus 228 al~ 230 (262)
||+
T Consensus 94 al~ 96 (98)
T cd01244 94 ALE 96 (98)
T ss_pred HHh
Confidence 996
No 20
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.98 E-value=0.017 Score=43.73 Aligned_cols=83 Identities=18% Similarity=0.186 Sum_probs=47.3
Q ss_pred CcccccceeEeee-cceeEeEeeeCCCCCCCcceeehhhhccCCCCcccCCCceeEEEEEe----eecceeeeeccccee
Q 024795 146 DVDDWLPRFIVLH-GSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYIL----TRHGLRIECSSISKI 220 (262)
Q Consensus 146 dVDDWlpRFVVl~-G~cif~yL~stdlsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIl----TrhGLR~ECSS~ski 220 (262)
-+.-|=+|++||+ +.+++||-.-++-.+++.+.|..+.=-+..+ ...+..-.++|.|. |..-=|+-|. -++-
T Consensus 13 ~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~--~~~~~~~~~~F~i~~~~~~~~~~r~f~a-~s~e 89 (102)
T cd01241 13 YIKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQL--MKTERPRPNTFIIRCLQWTTVIERTFHV-ESPE 89 (102)
T ss_pred CCCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeee--eeccCCCcceEEEEeccCCcccCEEEEe-CCHH
Confidence 3678999999999 8888888764433333444444432101000 01123344889886 2111233343 4455
Q ss_pred ehhhHHHHhhc
Q 024795 221 QVYSWLSALQT 231 (262)
Q Consensus 221 QVDsWL~al~~ 231 (262)
..++|+.||+.
T Consensus 90 e~~eWi~ai~~ 100 (102)
T cd01241 90 EREEWIHAIQT 100 (102)
T ss_pred HHHHHHHHHHh
Confidence 88999999974
No 21
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=95.85 E-value=0.023 Score=44.36 Aligned_cols=86 Identities=21% Similarity=0.323 Sum_probs=64.0
Q ss_pred hccceEEEeeecccCCCCCCCCCCCCcccccceeEeeecc------eeEeEeeeCC-----CCCCCcceeehhhhccCCC
Q 024795 121 RLSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGS------CIFFYLLSTD-----LSPQDSTVLSDVVEVASLP 189 (262)
Q Consensus 121 rlsgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~G~------cif~yL~std-----lsPQdStllsDIVEVg~lP 189 (262)
+.+|||... -.|=-||.||.+. =|+||--... -.|.+.|-|.++..|-..|
T Consensus 3 ~k~GyL~K~------------------K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~ 64 (101)
T cd01257 3 RKSGYLRKQ------------------KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRA 64 (101)
T ss_pred cEEEEEeEe------------------cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeecc
Confidence 568999885 3566699999977 3777755443 6799999999999887544
Q ss_pred CcccCCCceeEEEEEeeecceeeeecccceeehhhHHHHhh
Q 024795 190 SITRENGEMQYCFYILTRHGLRIECSSISKIQVYSWLSALQ 230 (262)
Q Consensus 190 ~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVDsWL~al~ 230 (262)
|..-+|+|=|.|... .|.=...++-.-+.|+.+|.
T Consensus 65 -----d~k~~~~f~i~t~dr-~f~l~aese~E~~~Wi~~i~ 99 (101)
T cd01257 65 -----DAKHRHLIALYTRDE-YFAVAAENEAEQDSWYQALL 99 (101)
T ss_pred -----ccccCeEEEEEeCCc-eEEEEeCCHHHHHHHHHHHh
Confidence 334469999999764 44445556777889999984
No 22
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.76 E-value=0.038 Score=43.53 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=56.3
Q ss_pred CcccccceeEeee-cceeEeEeee-CCCCCCCcceeehhhhccCCCCcccCCCceeEEEEEeeecceeeeecccceeehh
Q 024795 146 DVDDWLPRFIVLH-GSCIFFYLLS-TDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVY 223 (262)
Q Consensus 146 dVDDWlpRFVVl~-G~cif~yL~s-tdlsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVD 223 (262)
-+-.|=.||.||. |.-+|||... .|-.|++.+-|.+..+|-.--.. . .-.++|-|.|.--- |.=.--++-..+
T Consensus 20 ~~K~WkrRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~---~-~~~~~f~I~tp~R~-f~l~Aete~E~~ 94 (104)
T cd01236 20 RSKRWQRRWFILYDHGLLTYALDEMPTTLPQGTIDMNQCTDVVDAEAR---T-GQKFSICILTPDKE-HFIKAETKEEIS 94 (104)
T ss_pred eeccccceEEEEeCCCEEEEeeCCCCCcccceEEEccceEEEeecccc---c-CCccEEEEECCCce-EEEEeCCHHHHH
Confidence 4789999999996 6677777655 47789999999888876422111 1 12588998887433 333445667789
Q ss_pred hHHHHhh
Q 024795 224 SWLSALQ 230 (262)
Q Consensus 224 sWL~al~ 230 (262)
.|+++|.
T Consensus 95 ~Wi~~l~ 101 (104)
T cd01236 95 WWLNMLM 101 (104)
T ss_pred HHHHHHH
Confidence 9999986
No 23
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.44 E-value=0.041 Score=43.47 Aligned_cols=83 Identities=20% Similarity=0.349 Sum_probs=60.5
Q ss_pred cccccceeEeeecceeEeEeeeCCCCCC-CcceeehhhhccCCCCcccCCCceeEEEEEeeecceeeeecccceeehhhH
Q 024795 147 VDDWLPRFIVLHGSCIFFYLLSTDLSPQ-DSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVYSW 225 (262)
Q Consensus 147 VDDWlpRFVVl~G~cif~yL~stdlsPQ-dStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVDsW 225 (262)
+-.|=-|+.||+|..|+||=...+-+|- +++.|.++..|-....-.+. -..++||=|.|..=- |.=...++-+-++|
T Consensus 16 ~K~WkrRwF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~-~~~~~~Fei~tp~rt-~~l~A~se~e~e~W 93 (101)
T cd01264 16 IKRWKTRYFTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKRRD-RSLPKAFEIFTADKT-YILKAKDEKNAEEW 93 (101)
T ss_pred eecceeEEEEEeCCEEEEEeccCccCCCCceEEcccceEEeeccccccc-cccCcEEEEEcCCce-EEEEeCCHHHHHHH
Confidence 5678899999999999999887777777 89999999876533111110 123599999987743 44445567788999
Q ss_pred HHHhhc
Q 024795 226 LSALQT 231 (262)
Q Consensus 226 L~al~~ 231 (262)
+.+|+.
T Consensus 94 I~~i~~ 99 (101)
T cd01264 94 LQCLNI 99 (101)
T ss_pred HHHHHh
Confidence 999974
No 24
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.19 E-value=0.12 Score=41.54 Aligned_cols=106 Identities=12% Similarity=0.153 Sum_probs=68.0
Q ss_pred cceEEEeeecccCCCCCCCCCCCCcccccceeEeeecceeEeEeeeCCCC-------CCCcceeehhhhccCCCCcccCC
Q 024795 123 SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLS-------PQDSTVLSDVVEVASLPSITREN 195 (262)
Q Consensus 123 sgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~stdls-------PQdStllsDIVEVg~lP~f~rEd 195 (262)
.|||+-.-.|...--..|. .-.-|-++|+||+|..+|||---..-. +..++-|.. .+-....+.
T Consensus 3 ~g~l~RK~~~~~~~kk~~~----~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~-----a~~~ia~dy 73 (117)
T cd01230 3 HGALMRKVHADPDCRKTPF----GKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHH-----ALATRASDY 73 (117)
T ss_pred CcEEEEEEEecCCCccCCC----CCCcceEEEEEEECCEEEEEccCcccccccccccccceEEecc-----ceeEeeccc
Confidence 4899988888766555431 235799999999999999986542111 111222222 111223345
Q ss_pred CceeEEEEEeeecceeeeecccceeehhhHHHHhhccccccC
Q 024795 196 GEMQYCFYILTRHGLRIECSSISKIQVYSWLSALQTDCKLDY 237 (262)
Q Consensus 196 ge~~yaFyIlTrhGLR~ECSS~skiQVDsWL~al~~d~k~~~ 237 (262)
.+-.+-|.|.|.-|=-|-=+..+.-.+.+|+.+|+.=|-..|
T Consensus 74 ~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~~s 115 (117)
T cd01230 74 SKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAAFS 115 (117)
T ss_pred cCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhcc
Confidence 567789999998765544444556678899999997665443
No 25
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=93.70 E-value=0.16 Score=39.56 Aligned_cols=100 Identities=15% Similarity=0.255 Sum_probs=57.9
Q ss_pred cceEEEeeecccCCCCCCCCCCCCcccccceeEeeecceeEeEeeeCCCCCC--------------CcceeehhhhccCC
Q 024795 123 SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQ--------------DSTVLSDVVEVASL 188 (262)
Q Consensus 123 sgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~stdlsPQ--------------dStllsDIVEVg~l 188 (262)
.|||+-+.-|..--.-.| . ---.|-.-||||+|..++||=-.....+. .++-|.. ..++.-
T Consensus 3 eG~l~RK~~~~~~gkk~~-~---~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~-a~a~~a 77 (119)
T PF15410_consen 3 EGILMRKHELESGGKKAS-R---SKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHH-ALAEIA 77 (119)
T ss_dssp EEEEEEEEEEECTTCC-------S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT--EEEEE
T ss_pred eEEEEEEEEEcCCCCCcC-C---CCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecc-eEEEeC
Confidence 488888888876543332 2 33489999999999999999652211111 1111110 011112
Q ss_pred CCcccCCCceeEEEEEeeecceeeeecccceeehhhHHHHhhc
Q 024795 189 PSITRENGEMQYCFYILTRHGLRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 189 P~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVDsWL~al~~ 231 (262)
+.+ -+-.+.|.+.|..|-.|-=.-.+.-.+.+|+.+|+.
T Consensus 78 ~dY----~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~ 116 (119)
T PF15410_consen 78 SDY----TKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINY 116 (119)
T ss_dssp TTB----TTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHH
T ss_pred ccc----ccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhh
Confidence 222 245789999999998776666677788999999973
No 26
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.34 E-value=0.24 Score=38.91 Aligned_cols=83 Identities=13% Similarity=0.320 Sum_probs=51.5
Q ss_pred cccccceeEeeecceeEeEeeeCCCCCCCcceeehhh--hccCCCCc-----ccCCCceeEEEEEeee-cceeeeecccc
Q 024795 147 VDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVV--EVASLPSI-----TRENGEMQYCFYILTR-HGLRIECSSIS 218 (262)
Q Consensus 147 VDDWlpRFVVl~G~cif~yL~stdlsPQdStllsDIV--EVg~lP~f-----~rEdge~~yaFyIlTr-hGLR~ECSS~s 218 (262)
.+-|=+|+.||.+++|.||=--.|..|.|-+|+..-. +.|.-... ..+....+|.|-|.|. .=+.+.|.|
T Consensus 30 ~~~w~kRWFvlr~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s-- 107 (121)
T cd01254 30 CDRWQKRWFIVKESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNRSLKLKCKS-- 107 (121)
T ss_pred ccCCcceeEEEeCCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCcEEEEEeCC--
Confidence 4579999999999999998766666677766663322 11211100 0011244677777643 235666654
Q ss_pred eeehhhHHHHhhc
Q 024795 219 KIQVYSWLSALQT 231 (262)
Q Consensus 219 kiQVDsWL~al~~ 231 (262)
+.|...|+.+|+.
T Consensus 108 ~~~~~~Wi~~i~~ 120 (121)
T cd01254 108 SRKLKQWMASIED 120 (121)
T ss_pred HHHHHHHHHHHHh
Confidence 5677889999873
No 27
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.97 E-value=0.25 Score=37.39 Aligned_cols=77 Identities=13% Similarity=0.261 Sum_probs=51.2
Q ss_pred ccccceeEeeecceeEeEeeeCCCCC-----CCcceeehhhhccCCCCcccCCCceeEEEEEeeecceeeeecccceeeh
Q 024795 148 DDWLPRFIVLHGSCIFFYLLSTDLSP-----QDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQV 222 (262)
Q Consensus 148 DDWlpRFVVl~G~cif~yL~stdlsP-----QdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQV 222 (262)
-.|=||+++|...-+.|+-.....+. .+.+-++++ .|.. ..+.+-.|+|.|.+.+ =.|+++-.+.-.-
T Consensus 16 ~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~-~v~~-----~~~~~~~~~F~I~~~~-rsf~l~A~s~eEk 88 (101)
T cd01219 16 EKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGM-QVCE-----GDNLERPHSFLVSGKQ-RCLELQARTQKEK 88 (101)
T ss_pred CCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccE-EEEe-----CCCCCcCceEEEecCC-cEEEEEcCCHHHH
Confidence 46889999998886655542222222 233444432 1211 1144567999999888 7899988899999
Q ss_pred hhHHHHhhc
Q 024795 223 YSWLSALQT 231 (262)
Q Consensus 223 DsWL~al~~ 231 (262)
+.|+.||+.
T Consensus 89 ~~W~~ai~~ 97 (101)
T cd01219 89 NDWVQAIFS 97 (101)
T ss_pred HHHHHHHHH
Confidence 999999974
No 28
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=91.68 E-value=0.88 Score=36.88 Aligned_cols=94 Identities=16% Similarity=0.373 Sum_probs=55.2
Q ss_pred cceEEEeeecccCCCCCCCCCCCCcccccceeEeeecc-eeEeEeeeCCC--CCCCcceeehhhhccCCCCcccC--CCc
Q 024795 123 SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGS-CIFFYLLSTDL--SPQDSTVLSDVVEVASLPSITRE--NGE 197 (262)
Q Consensus 123 sgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~G~-cif~yL~stdl--sPQdStllsDIVEVg~lP~f~rE--dge 197 (262)
-||||+|+... + ---|.-.|+..++. =+|=++...-- .+|. ....+--.+|-+-+-.++ ..+
T Consensus 2 ~GYLy~~~k~~--------~----~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~-g~v~~~e~~~l~sc~~r~~~~~d 68 (104)
T cd01249 2 EGYLYMQEKSK--------F----GGSWTKYYCTYSKETRIFTMVPFNQKTKTDMK-GAVAQDETLTLKSCSRRKTESID 68 (104)
T ss_pred CceEEEEcCCC--------C----CCeEEEEEEEEEcCCcEEEEEecccccccccC-cccccceEEeeeeccccccCCcc
Confidence 49999999543 1 12488778887774 34322221111 1112 233344445555555553 338
Q ss_pred eeEEEEEee--ecc-eeeeecccceeehhhHHHHhhc
Q 024795 198 MQYCFYILT--RHG-LRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 198 ~~yaFyIlT--rhG-LR~ECSS~skiQVDsWL~al~~ 231 (262)
-||||=|.+ ++| +-+.. .|+-+-..|+.|+.+
T Consensus 69 RRFCFei~~~~~~~~~~lQA--~Se~~~~~Wi~A~dg 103 (104)
T cd01249 69 KRFCFDVEVEEKPGVITMQA--LSEKDRRLWIEAMDG 103 (104)
T ss_pred ceeeEeeeecCCCCeEEEEe--cCHHHHHHHHHhhcC
Confidence 899999954 443 34444 677778889999875
No 29
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.28 E-value=1.4 Score=35.73 Aligned_cols=77 Identities=27% Similarity=0.411 Sum_probs=46.9
Q ss_pred cccccceeEeeecceeEeEeeeCCCCCCC---------cceeeh----hhhccCCCCcccCCCceeEEEEEeeecc-eee
Q 024795 147 VDDWLPRFIVLHGSCIFFYLLSTDLSPQD---------STVLSD----VVEVASLPSITRENGEMQYCFYILTRHG-LRI 212 (262)
Q Consensus 147 VDDWlpRFVVl~G~cif~yL~stdlsPQd---------StllsD----IVEVg~lP~f~rEdge~~yaFyIlTrhG-LR~ 212 (262)
-..|-|||++|.|..+++|- --|+. +-=|.| +|..|. .-.-+++ --|+|-|.|-|| ...
T Consensus 16 ~~~wrP~F~aL~~~dl~ly~----s~P~s~e~w~~p~~~y~L~~~atrvv~~~~--~~~~~~~-~~~~F~irtg~~vesh 88 (108)
T cd01258 16 SQRWRPRFLALKGSEFLFFE----TPPLSVEDWSRPLYVYKLYDVATRLVKNSS--TRRLNDQ-RDNCFLIRTGTQVENH 88 (108)
T ss_pred ccccceEEEEEcCCcEEEEe----CCCCCHHHHhChhhhChhHHhhhheeccCC--ccCcCCC-CceEEEEEcCCceeeE
Confidence 47899999999999999983 33442 222222 244443 2111223 348999999999 322
Q ss_pred eecccceeehhhHHHHhh
Q 024795 213 ECSSISKIQVYSWLSALQ 230 (262)
Q Consensus 213 ECSS~skiQVDsWL~al~ 230 (262)
-=|.-..-..-.|-+||+
T Consensus 89 ~fsVEt~~dL~~W~raiv 106 (108)
T cd01258 89 YLRVETHRDLASWERALV 106 (108)
T ss_pred EEEecCHHHHHHHHHHHh
Confidence 223334455667888775
No 30
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=85.42 E-value=0.97 Score=46.56 Aligned_cols=119 Identities=20% Similarity=0.324 Sum_probs=85.6
Q ss_pred eHHHHHHHHhhhcChHHHHHHHHHhhhhHHH----------------HHHhhhccceEEEeeecccCCCCCCCCCCCCcc
Q 024795 85 TATELESLRSELADLEDREAHLKAQLEHVDE----------------ILRSARLSGYLYIRTRWKPLPGEPPPIDDTDVD 148 (262)
Q Consensus 85 t~~EvesLR~Ela~~eErEa~lkAqLe~iDE----------------vLRsarlsgYLyiRtRW~~LpgEpppiDDtdVD 148 (262)
-++.|..+|.|.+...++..+....|.+..+ ....-+..||||.|+-= ---
T Consensus 223 i~~~v~ql~~~~~~e~~am~~~~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~~~-------------~~~ 289 (785)
T KOG0521|consen 223 VATYVQQLREESDAEQRAMEQRYQELRSASNLESRPKSDSASPSGGNLKLGYRMEGYLRKKASN-------------ASK 289 (785)
T ss_pred HHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhhhccccccccccccccchhhhhhhhhhhccc-------------chh
Confidence 4678999999888877777777777776533 23345677888887631 112
Q ss_pred cccceeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCCCcccCCC---ceeEEEEEeeecceeeeecccceeehhh-
Q 024795 149 DWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENG---EMQYCFYILTRHGLRIECSSISKIQVYS- 224 (262)
Q Consensus 149 DWlpRFVVl~G~cif~yL~stdlsPQdStllsDIVEVg~lP~f~rEdg---e~~yaFyIlTrhGLR~ECSS~skiQVDs- 224 (262)
-|=+||.-+||.++-|+.+..+..+ .+......+-.+-+. +-||||-|+| + +.++..|-+|
T Consensus 290 tw~r~~f~~q~~~l~~~~r~~~~~~--------~~~~dL~~csvk~~~~~~drr~CF~iiS-~------tks~~lQAes~ 354 (785)
T KOG0521|consen 290 TWKRRWFSIQDGQLGYQHRGADAEN--------VLIEDLRTCSVKPDAEQRDRRFCFEIIS-P------TKSYLLQAESE 354 (785)
T ss_pred hHHhhhhhhhccccccccccccccc--------cccccchhccccCCcccccceeeEEEec-C------CcceEEecCch
Confidence 3555999999999999999999887 555555666665443 4799999999 2 4566677766
Q ss_pred -----HHHHhhc
Q 024795 225 -----WLSALQT 231 (262)
Q Consensus 225 -----WL~al~~ 231 (262)
|+++|+.
T Consensus 355 ~d~~~Wi~~i~n 366 (785)
T KOG0521|consen 355 KDCQDWISALQN 366 (785)
T ss_pred hHHHHHHHHHHH
Confidence 9999873
No 31
>PRK09039 hypothetical protein; Validated
Probab=84.88 E-value=0.36 Score=44.47 Aligned_cols=100 Identities=23% Similarity=0.437 Sum_probs=66.6
Q ss_pred CCCccccceeHHHHHHHHhh-------hcChHHHHHHHHHhhhhHHHHHHhh------hccceEEEeeec----ccCCCC
Q 024795 76 SDGQEKVELTATELESLRSE-------LADLEDREAHLKAQLEHVDEILRSA------RLSGYLYIRTRW----KPLPGE 138 (262)
Q Consensus 76 ~~~~ekvelt~~EvesLR~E-------la~~eErEa~lkAqLe~iDEvLRsa------rlsgYLyiRtRW----~~LpgE 138 (262)
++.+-+|++..+|++.||.. |+.+|+|.+..++|++.+.+-|+.| .|..| |+.. .++-|.
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~---~~~~~~~l~~~~~~ 209 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRY---RSEFFGRLREILGD 209 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHhCC
Confidence 35566777777888777765 4566778888888888777666655 35554 2222 233444
Q ss_pred CCCCCCCCcccccceeEeeecceeEeEeeeCCCCCCCcceeehhhhc
Q 024795 139 PPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEV 185 (262)
Q Consensus 139 pppiDDtdVDDWlpRFVVl~G~cif~yL~stdlsPQdStllsDIVEV 185 (262)
++.|.-. +| ||| +++ =++|-.-+++|+|+.-..|..|.++
T Consensus 210 ~~~iri~--g~---~~~-~~~-~vlF~~gsa~L~~~~~~~L~~ia~~ 249 (343)
T PRK09039 210 REGIRIV--GD---RFV-FQS-EVLFPTGSAELNPEGQAEIAKLAAA 249 (343)
T ss_pred CCCcEEE--CC---EEE-ecC-CceeCCCCcccCHHHHHHHHHHHHH
Confidence 4444322 22 775 444 4888899999999999999888764
No 32
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=84.00 E-value=3.1 Score=32.30 Aligned_cols=93 Identities=22% Similarity=0.445 Sum_probs=45.5
Q ss_pred cceEEEeeecccCCCCCCCCCCCCcccccceeEeee-cceeEeEee-------------eCCCCCCCcceeehhhhccCC
Q 024795 123 SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLH-GSCIFFYLL-------------STDLSPQDSTVLSDVVEVASL 188 (262)
Q Consensus 123 sgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~-G~cif~yL~-------------stdlsPQdStllsDIVEVg~l 188 (262)
+|||| .|..-=|. -|=+||.||+ +-.+-||=- +.+..+.++.-. .+++..+
T Consensus 2 ~G~l~---K~~~~~~k----------gWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~ 66 (112)
T PF15413_consen 2 EGYLY---KWGNKFGK----------GWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSI--SRRSSRI 66 (112)
T ss_dssp EEEEE---E--TTS-S------------EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE-----GGGT-
T ss_pred CceEE---EecCCCCc----------CccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCc--ccccccc
Confidence 58888 44443333 4999999999 888888866 344444443321 1222222
Q ss_pred CCc---ccCCCceeEEEEEeeecceeeeecccceeehhhHHHHhhc
Q 024795 189 PSI---TRENGEMQYCFYILTRHGLRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 189 P~f---~rEdge~~yaFyIlTrhGLR~ECSS~skiQVDsWL~al~~ 231 (262)
-+. .+...-..-.|+|-|-.+ +|-|-.-+.-....|+.||+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~i~T~~k-t~~l~~~t~~d~~~Wi~aL~~ 111 (112)
T PF15413_consen 67 QGIKDKNPFGEIHLKVFSIFTPTK-TFHLRCETREDRYDWIEALQE 111 (112)
T ss_dssp EEEES-T--SS-SSEEEEEE-SS--EEEEEESSHHHHHHHHHHHHH
T ss_pred cccccCCcccCcCCCCcEEECCCc-EEEEEECCHHHHHHHHHHHHh
Confidence 110 111112224677766544 444444445566789999873
No 33
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=78.22 E-value=3.3 Score=28.92 Aligned_cols=44 Identities=27% Similarity=0.429 Sum_probs=34.7
Q ss_pred ceeHHHHHHHHhhhcChHHHHHHHHHhhhhH----HHHHHhhh-ccceE
Q 024795 83 ELTATELESLRSELADLEDREAHLKAQLEHV----DEILRSAR-LSGYL 126 (262)
Q Consensus 83 elt~~EvesLR~Ela~~eErEa~lkAqLe~i----DEvLRsar-lsgYL 126 (262)
.-..+|++.|..+++.++++-..|+++++.+ |.|-+.|| --||.
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~ 68 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMV 68 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCc
Confidence 3346788888888988888888888888776 67788888 66765
No 34
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=77.92 E-value=2.4 Score=35.33 Aligned_cols=95 Identities=18% Similarity=0.433 Sum_probs=64.7
Q ss_pred ccceEEEeeecccCCCCCCCCCCCCcccccceeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCC--Ccc-cCCCce
Q 024795 122 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLP--SIT-RENGEM 198 (262)
Q Consensus 122 lsgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~stdlsPQdStllsDIVEVg~lP--~f~-rEdge~ 198 (262)
+-|+||+|. +|- .-|=.+|+||+++=|||+=+.+--+|-|=+.+.+.-+...-- ++. ....-|
T Consensus 2 ~~g~LylK~-----~gk---------KsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPT 67 (114)
T cd01259 2 MEGPLYLKA-----DGK---------KSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPT 67 (114)
T ss_pred ccceEEEcc-----CCC---------ccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCC
Confidence 579999984 222 369999999999999999999888887777777766553111 111 122245
Q ss_pred eEEEEEe-------eecceeeeecccceeehhhHHHHhhc
Q 024795 199 QYCFYIL-------TRHGLRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 199 ~yaFyIl-------TrhGLR~ECSS~skiQVDsWL~al~~ 231 (262)
-|+|-+= ..+.|++-|.-. +-+..+|++||+.
T Consensus 68 d~~F~~K~~~~q~~~s~~ik~lCaeD-e~t~~~W~ta~Ri 106 (114)
T cd01259 68 DYCFGFKAVGDQSKGSQSIKYLCAED-LPTLDRWLTAIRI 106 (114)
T ss_pred CceEEEeccccCcccchhheeeccCC-HHHHHHHHHHHHH
Confidence 5666551 246677777643 4568899999973
No 35
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=73.40 E-value=4.8 Score=33.15 Aligned_cols=45 Identities=31% Similarity=0.605 Sum_probs=34.2
Q ss_pred hccCCCC-cccCCCceeEEEEEeeecce-eeeecccceeehhhHHHHhh
Q 024795 184 EVASLPS-ITRENGEMQYCFYILTRHGL-RIECSSISKIQVYSWLSALQ 230 (262)
Q Consensus 184 EVg~lP~-f~rEdge~~yaFyIlTrhGL-R~ECSS~skiQVDsWL~al~ 230 (262)
|+-.-|. ...|+|+.+|.|=+-|.+|+ .|||-|... -+.|...|+
T Consensus 54 ~~~awpgr~~~e~~~~~~yfgL~T~~G~vEfec~~~~~--~k~W~~gI~ 100 (110)
T PF08458_consen 54 EIPAWPGRELREDGEERRYFGLKTAQGVVEFECDSQRE--YKRWVQGIQ 100 (110)
T ss_pred CcccCCCcccccCCceEEEEEEEecCcEEEEEeCChhh--HHHHHHHHH
Confidence 3444453 45688889999999999996 799988744 667998876
No 36
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=70.37 E-value=2.2 Score=32.23 Aligned_cols=30 Identities=30% Similarity=0.686 Sum_probs=23.7
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHHh
Q 024795 86 ATELESLRSELADLEDREAHLKAQLEHVDEILRS 119 (262)
Q Consensus 86 ~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLRs 119 (262)
+.|||-||..|+++++|-++|+.+ .++||+
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~E----N~~Lk~ 42 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEE----NNLLKQ 42 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh
Confidence 469999999999999998876543 456654
No 37
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=69.27 E-value=4.3 Score=34.38 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=21.3
Q ss_pred eHHHHHHHHhhhcChHHHHHHHHHh
Q 024795 85 TATELESLRSELADLEDREAHLKAQ 109 (262)
Q Consensus 85 t~~EvesLR~Ela~~eErEa~lkAq 109 (262)
-+.|||-||..|.+++||-++|.+.
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999998877653
No 38
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=67.18 E-value=14 Score=30.90 Aligned_cols=65 Identities=15% Similarity=0.081 Sum_probs=53.0
Q ss_pred cccceeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCCCcccCCCceeEEEEEeeecceeeee
Q 024795 149 DWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIEC 214 (262)
Q Consensus 149 DWlpRFVVl~G~cif~yL~stdlsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~EC 214 (262)
-|--+|-+|..-||-+|.--++=.|--.+=|+||.-|-.-.++...+|..-|+|=|.|. -+-|-+
T Consensus 15 ~rKRhYWrLDsK~Itlf~~e~~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~-~~vY~V 79 (117)
T cd01239 15 RRKKHYWRLDSKAITLYQEESGSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTT-TNVYFV 79 (117)
T ss_pred ceeeeEEEecCCeEEEEEcCCCCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEec-CEEEEe
Confidence 46678999999999999999988888899999999986544455667899999999994 355554
No 39
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=63.53 E-value=72 Score=25.20 Aligned_cols=106 Identities=22% Similarity=0.277 Sum_probs=69.3
Q ss_pred HHHHHHhhhccceEEEeeecccCCCCCCCCCCCCcccccceeEeeecceeEeEeeeCCC-------CCCCcceeehhhhc
Q 024795 113 VDEILRSARLSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDL-------SPQDSTVLSDVVEV 185 (262)
Q Consensus 113 iDEvLRsarlsgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~stdl-------sPQdStllsDIVEV 185 (262)
|.+.|....-..|||--+|=. -++ + -...-.||+-|+..+...|-.+.+= .-..+.-+.+|.+|
T Consensus 2 v~~ai~~~~~G~~l~Ky~r~~-~~~----~----~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V 72 (123)
T PF12814_consen 2 VIQAITQLMIGEWLYKYTRKG-RSG----I----SEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEV 72 (123)
T ss_pred HHHHHHHhhcccEEEEEcccc-cCc----c----CCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEe
Confidence 345667777788998766654 111 0 2345789999999877766655431 11245778888877
Q ss_pred c---CCCCcccCCCceeEEEEEeee-cceeeeecccceeehhhHHHHhh
Q 024795 186 A---SLPSITRENGEMQYCFYILTR-HGLRIECSSISKIQVYSWLSALQ 230 (262)
Q Consensus 186 g---~lP~f~rEdge~~yaFyIlTr-hGLR~ECSS~skiQVDsWL~al~ 230 (262)
- ..|.+.... +..|+|-|.|. -=|++.|.+.. .-+-|+.+|+
T Consensus 73 ~~~~~~~~~~~~~-~~~~si~i~t~~R~L~l~a~s~~--~~~~W~~aL~ 118 (123)
T PF12814_consen 73 KDGNPSPPGLKKP-DHNKSIIIVTPDRSLDLTAPSRE--RHEIWFNALR 118 (123)
T ss_pred cCCCCCCcccccc-ccceEEEEEcCCeEEEEEeCCHH--HHHHHHHHHH
Confidence 4 345444222 27788887754 36899998755 4678999986
No 40
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=63.13 E-value=23 Score=28.87 Aligned_cols=80 Identities=14% Similarity=0.223 Sum_probs=49.1
Q ss_pred ccccceeEeeecceeEeEeeeCCCCCCCcceeeh-hhhccCCCCcccCCCceeEEEEEee--eccee-eeecccceeehh
Q 024795 148 DDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSD-VVEVASLPSITRENGEMQYCFYILT--RHGLR-IECSSISKIQVY 223 (262)
Q Consensus 148 DDWlpRFVVl~G~cif~yL~stdlsPQdStllsD-IVEVg~lP~f~rEdge~~yaFyIlT--rhGLR-~ECSS~skiQVD 223 (262)
..|=-||+++.|.-||||=...|..|...+-|.. -.||-+=.|. .+-.|+|-+++ -.|-| |.=+--++-|-+
T Consensus 18 K~~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl~gcev~~dv~~----~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya 93 (106)
T cd01237 18 KGYKQYWFTFRDTSISYYKSKEDSNGAPIGQLNLKGCEVTPDVNV----AQQKFHIKLLIPTAEGMNEVWLRCDNEKQYA 93 (106)
T ss_pred hhheeEEEEEeCCEEEEEccchhcCCCCeEEEecCceEEcccccc----cccceEEEEecCCccCCeEEEEECCCHHHHH
Confidence 3477899999999999996666666665544322 1222111111 12347777775 44544 333334688999
Q ss_pred hHHHHhhc
Q 024795 224 SWLSALQT 231 (262)
Q Consensus 224 sWL~al~~ 231 (262)
+|+.|++.
T Consensus 94 ~Wmaa~rl 101 (106)
T cd01237 94 KWMAACRL 101 (106)
T ss_pred HHHHHHHH
Confidence 99999764
No 41
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=62.50 E-value=8.7 Score=30.40 Aligned_cols=33 Identities=33% Similarity=0.476 Sum_probs=29.6
Q ss_pred HHhhhcChHHHHHHHHHhhhhHHHHHHhhhccc
Q 024795 92 LRSELADLEDREAHLKAQLEHVDEILRSARLSG 124 (262)
Q Consensus 92 LR~Ela~~eErEa~lkAqLe~iDEvLRsarlsg 124 (262)
.-.||.++||+-++.+-+||.||-=||+..||.
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~ 35 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSP 35 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCCh
Confidence 457999999999999999999999999988873
No 42
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=59.85 E-value=7.6 Score=35.32 Aligned_cols=53 Identities=28% Similarity=0.404 Sum_probs=44.5
Q ss_pred hhhhhHHHhhhcccCCCccccCCCCccccceeHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 024795 54 KLKSAAVMLNMFSLRGLPWVSSSDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVD 114 (262)
Q Consensus 54 ~~k~aas~l~lfs~~~~~W~s~~~~~ekvelt~~EvesLR~Ela~~eErEa~lkAqLe~iD 114 (262)
-+++|-.+++.+-++ +-++||.-...+-+.|..+|+.+|.|-+.-++||+...
T Consensus 162 LL~~ae~L~~vYP~~--------ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n 214 (259)
T PF08657_consen 162 LLRGAEKLCNVYPLP--------GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMN 214 (259)
T ss_pred HHHHHHHHHHhCCCh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666667777666 67899999999999999999999999999999998764
No 43
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=57.99 E-value=8.4 Score=32.58 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=28.8
Q ss_pred ceeHHHHHHHHhhhcCh---------HHHHHHHHHhhhhHHHHHHhhhc
Q 024795 83 ELTATELESLRSELADL---------EDREAHLKAQLEHVDEILRSARL 122 (262)
Q Consensus 83 elt~~EvesLR~Ela~~---------eErEa~lkAqLe~iDEvLRsarl 122 (262)
+...+|++.|+.+|+.| .++.+.+.+++..+.+.|..|++
T Consensus 37 ~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L~~A~I 85 (160)
T PRK06342 37 KALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAARRRTAQL 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHccCEE
Confidence 34456777776666655 35666778888889999998876
No 44
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=56.61 E-value=15 Score=34.81 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHHhh
Q 024795 86 ATELESLRSELADLEDREAHLKAQLEHVDEILRSA 120 (262)
Q Consensus 86 ~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLRsa 120 (262)
++|-|.|-+|+.++|.|-..||.|++++..=+|+-
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~yl 281 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYL 281 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999987655553
No 45
>PF12852 Cupin_6: Cupin
Probab=55.57 E-value=23 Score=28.49 Aligned_cols=43 Identities=37% Similarity=0.764 Sum_probs=31.4
Q ss_pred hHHHHHHhhhccceEEEeee----ccc-CCCCCCCCCCCCcccccceeEeeecceeEe
Q 024795 112 HVDEILRSARLSGYLYIRTR----WKP-LPGEPPPIDDTDVDDWLPRFIVLHGSCIFF 164 (262)
Q Consensus 112 ~iDEvLRsarlsgYLyiRtR----W~~-LpgEpppiDDtdVDDWlpRFVVl~G~cif~ 164 (262)
-++++|+..|+.|.+|.|.. |.- .|+.+ . ..=.+|++|+|.+.
T Consensus 2 ~Ls~lL~~l~l~~~~~~~~~~~~~W~~~~~~~~---------~-~~fh~V~~G~~~l~ 49 (186)
T PF12852_consen 2 PLSDLLSSLRLRGSLFFRCELCGPWGLRFPGSP---------G-ASFHVVLRGSCWLR 49 (186)
T ss_pred chHHHHhhCCCceEEEEEEEEeCCcEEeccCCC---------c-eEEEEEECCeEEEE
Confidence 47899999999999999875 432 23221 1 55678999999765
No 46
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=52.89 E-value=23 Score=30.82 Aligned_cols=41 Identities=32% Similarity=0.408 Sum_probs=28.8
Q ss_pred eHHHHHHHHhhhcChHHHHH---HHHHhhhhHHHHHHhhhccce
Q 024795 85 TATELESLRSELADLEDREA---HLKAQLEHVDEILRSARLSGY 125 (262)
Q Consensus 85 t~~EvesLR~Ela~~eErEa---~lkAqLe~iDEvLRsarlsgY 125 (262)
..+|-+.|+.|++.++.+.+ .++++.+.+.++|....-..|
T Consensus 74 l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~~~~~ 117 (276)
T PRK13922 74 LREENEELKKELLELESRLQELEQLEAENARLRELLNLKESLDY 117 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 45677778888877777766 567777778887776554443
No 47
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=49.95 E-value=15 Score=27.53 Aligned_cols=27 Identities=37% Similarity=0.546 Sum_probs=13.0
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhh
Q 024795 86 ATELESLRSELADLEDREAHLKAQLEH 112 (262)
Q Consensus 86 ~~EvesLR~Ela~~eErEa~lkAqLe~ 112 (262)
..+++.|+.+|..++.+.+.+.++++-
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~ 95 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQA 95 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444444443
No 48
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=48.92 E-value=19 Score=28.44 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=25.7
Q ss_pred ccceeHHHHHHHHhhhcChHHHHHHHHHhhhhH
Q 024795 81 KVELTATELESLRSELADLEDREAHLKAQLEHV 113 (262)
Q Consensus 81 kvelt~~EvesLR~Ela~~eErEa~lkAqLe~i 113 (262)
+..-..+|++.++.|++.+++|.+.|+++++.+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556788888888888888888888887765
No 49
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=48.70 E-value=19 Score=34.90 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=32.6
Q ss_pred ccceeHHHHHHHHhhhcChHHHHHH-HHHhhhhHHHHHHhh
Q 024795 81 KVELTATELESLRSELADLEDREAH-LKAQLEHVDEILRSA 120 (262)
Q Consensus 81 kvelt~~EvesLR~Ela~~eErEa~-lkAqLe~iDEvLRsa 120 (262)
-+||-..|+..|+.|||++|||-+. .-.+...|.|++.+.
T Consensus 270 ~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~ 310 (395)
T PF10267_consen 270 LTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESC 310 (395)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3567788999999999999999774 456778888888764
No 50
>PHA03230 nuclear protein UL55; Provisional
Probab=48.07 E-value=21 Score=31.84 Aligned_cols=80 Identities=24% Similarity=0.394 Sum_probs=59.9
Q ss_pred ceeEeeecce-------eEeEeeeCCCCCCCcceeehhhhccCCCCcccCCCc---------------eeE-----EEEE
Q 024795 152 PRFIVLHGSC-------IFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGE---------------MQY-----CFYI 204 (262)
Q Consensus 152 pRFVVl~G~c-------if~yL~stdlsPQdStllsDIVEVg~lP~f~rEdge---------------~~y-----aFyI 204 (262)
.|-.+|+-.| .|||=+.+|=+|..+.++.|+--.++|=|..|--.| |.+ ..+-
T Consensus 52 ~RsY~iRa~C~~~~~lHaFF~gl~~~~~~~~~p~~~dl~~f~~lln~~~~l~el~~~~~lC~aPFSaaTi~d~~~~~~~~ 131 (180)
T PHA03230 52 TRTYTIRATCNTSGDLHAFFFGLFTDSKPSEQPSLPDLRNFCRLLNNPRVLRELRTKHELCSAPFSAATIKDSLDDGYLE 131 (180)
T ss_pred ceeEEEEeecCCCCceeEEEEEEeecCCcccCCCHHHHHHHHHHHcCHHHHHHhcccCCCCCCCcchheeeccCCCCcce
Confidence 6888999888 699999999999988998887665555443331111 111 1236
Q ss_pred eeecceeeeecccceeehhhHHHHhhc
Q 024795 205 LTRHGLRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 205 lTrhGLR~ECSS~skiQVDsWL~al~~ 231 (262)
+|=+||.|-|==.++|-+++|..|.-+
T Consensus 132 ~~I~Gl~yHCHCk~PFS~eCW~gA~aA 158 (180)
T PHA03230 132 YTINGLCYHCHCKNPFSLECWQGAFAA 158 (180)
T ss_pred eEEeEEEEeeccCCCCCHHHHHHHHHH
Confidence 788999999999999999999988654
No 51
>PF04537 Herpes_UL55: Herpesvirus UL55 protein; InterPro: IPR007622 In infected cells, UL55 is associated with the nuclear matrix, and found adjacent to compartments containing the capsid protein ICP35. UL55 was not detected in assembled virions. It is thought that UL55 may play a role in virion assembly or maturation [].; GO: 0019067 viral assembly, maturation, egress, and release
Probab=47.27 E-value=33 Score=30.37 Aligned_cols=74 Identities=28% Similarity=0.455 Sum_probs=56.5
Q ss_pred ceeEeeecce-------eEeEeeeCCCCCCCcceeehhhhccCCCCcc---c------------------------CCCc
Q 024795 152 PRFIVLHGSC-------IFFYLLSTDLSPQDSTVLSDVVEVASLPSIT---R------------------------ENGE 197 (262)
Q Consensus 152 pRFVVl~G~c-------if~yL~stdlsPQdStllsDIVEVg~lP~f~---r------------------------Edge 197 (262)
.|-.+|+-.| .|||=+.+|=+|.-+.++.|+--.-+|=|.. + ++|+
T Consensus 46 ~Rsy~lRa~C~~~~~~HaFF~gl~~~~~~~~~p~~~dl~~f~~llN~~~~l~el~~~~~~~~C~~PFSaaTi~d~~~~~~ 125 (169)
T PF04537_consen 46 TRSYVLRATCNTSGDLHAFFFGLFKDSKESMSPLLSDLRNFCRLLNNPPVLRELRDKHGRPLCSAPFSAATIKDSPDDGY 125 (169)
T ss_pred eeeEEEEeecCCCCceeEEEEEEEecCCCccCcchHhHHHHHHHHcChHHHHHHhhcccccccCCCcccceeeccCCCCC
Confidence 5888899888 6999999999999998887764333332211 1 3333
Q ss_pred eeEEEEEeeecceeeeecccceeehhhHHHHhhc
Q 024795 198 MQYCFYILTRHGLRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 198 ~~yaFyIlTrhGLR~ECSS~skiQVDsWL~al~~ 231 (262)
-+|=+||.|-|==.++|-+++|..|--+
T Consensus 126 ------~~~I~Gl~yHCHCk~PFS~eCW~gA~aA 153 (169)
T PF04537_consen 126 ------EYTINGLCYHCHCKNPFSLECWRGAFAA 153 (169)
T ss_pred ------ceEEEEEEEEeecCCCCCHHHHHHHHHH
Confidence 6678999999999999999999988654
No 52
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.47 E-value=20 Score=34.88 Aligned_cols=82 Identities=21% Similarity=0.504 Sum_probs=54.0
Q ss_pred CcccccceeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCCCcccCCCceeEEE--EEeeecce-------------
Q 024795 146 DVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCF--YILTRHGL------------- 210 (262)
Q Consensus 146 dVDDWlpRFVVl~G~cif~yL~stdlsPQdStllsDIVEVg~lP~f~rEdge~~yaF--yIlTrhGL------------- 210 (262)
-|.-|--||.||.--|+|||=.-||--|-+-+-|..+- --+-||-.--+|| |+.++.|-
T Consensus 273 rvktWKrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNls------ir~VedP~kP~cfEly~ps~~gq~IKACKTe~DGRv 346 (395)
T KOG0930|consen 273 RVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLS------IREVEDPKKPNCFELYIPSNKGQVIKACKTEADGRV 346 (395)
T ss_pred cccchhheeEEeecceeeeeeeccCCCCCcceeccccc------eeeccCCCCCCeEEEecCCCCcCeeeeecccCCcee
Confidence 58889999999999999999999999999988776530 0111233333344 45544332
Q ss_pred ------eeeecccceeehhhHHHHhhccc
Q 024795 211 ------RIECSSISKIQVYSWLSALQTDC 233 (262)
Q Consensus 211 ------R~ECSS~skiQVDsWL~al~~d~ 233 (262)
-|--|-.+.-.-|+|+.+|++-.
T Consensus 347 VEG~H~vYrIsA~~~Ee~~~Wi~sI~a~i 375 (395)
T KOG0930|consen 347 VEGNHSVYRISAPTPEEKDEWIKSIKAAI 375 (395)
T ss_pred EeccceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 13334445556788888887543
No 53
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=45.08 E-value=45 Score=30.71 Aligned_cols=82 Identities=17% Similarity=0.365 Sum_probs=54.2
Q ss_pred cccceeEeeecceeEeEee---eC-CCCCCCcceeehhhhccCCCCcccCCCceeEEEEEeeecceeeeecccceeehhh
Q 024795 149 DWLPRFIVLHGSCIFFYLL---ST-DLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVYS 224 (262)
Q Consensus 149 DWlpRFVVl~G~cif~yL~---st-dlsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVDs 224 (262)
.|-.||..+.+.=+...+. .. +-+|.-+. +.++-+|=++|.+.-.. ..++|-|-|+.|=|+-=-+.++...|.
T Consensus 391 ~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~-l~~~~~v~pv~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~ 467 (478)
T PTZ00267 391 RWKKRYFYIGNGQLRISLSENPENDGVAPKSVN-LETVNDVFPVPEVYSQK--HPNQLVLWFNNGQKIIAYAKTAEDRDQ 467 (478)
T ss_pred chhhheEEecCCceEEEeccccccCCCCCcccc-HHHhcccccccHHhcCC--CCceEEEEecCCcEEEEecCChHHHHH
Confidence 4888988887655555443 11 22333333 55666666665443322 257788888888887776688899999
Q ss_pred HHHHhhccc
Q 024795 225 WLSALQTDC 233 (262)
Q Consensus 225 WL~al~~d~ 233 (262)
|+++|+.=|
T Consensus 468 W~~~~~~~~ 476 (478)
T PTZ00267 468 WISKFQRAC 476 (478)
T ss_pred HHHHHHHHh
Confidence 999998654
No 54
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=43.73 E-value=33 Score=26.96 Aligned_cols=28 Identities=29% Similarity=0.525 Sum_probs=12.8
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhH
Q 024795 86 ATELESLRSELADLEDREAHLKAQLEHV 113 (262)
Q Consensus 86 ~~EvesLR~Ela~~eErEa~lkAqLe~i 113 (262)
+++++.|+..++..+.|-..+..+++|+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444444444444444444444444443
No 55
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=43.33 E-value=28 Score=28.49 Aligned_cols=51 Identities=20% Similarity=0.128 Sum_probs=37.9
Q ss_pred hhhhccCCCCcccCC--CceeEEEEEeeec-ceeeeecccceeehhhHHHHhhc
Q 024795 181 DVVEVASLPSITREN--GEMQYCFYILTRH-GLRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 181 DIVEVg~lP~f~rEd--ge~~yaFyIlTrh-GLR~ECSS~skiQVDsWL~al~~ 231 (262)
|-+||..+|.=...+ ...++||+|...+ +--|.|.-.+.-+=.+||.|+..
T Consensus 52 ~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 52 DRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred ccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHH
Confidence 445666666544442 2468899999888 66788888888899999999864
No 56
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=42.06 E-value=18 Score=29.15 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=32.0
Q ss_pred hhccCCCCcccCCCceeEEEEEeeecceeeeecccceeehhhHHHHhhc
Q 024795 183 VEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 183 VEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVDsWL~al~~ 231 (262)
++|..+|.- ++..+||+|.++.+--|+..-.+.-+=..|+.+|..
T Consensus 63 ~~V~d~~d~----~~~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~ 107 (112)
T cd01261 63 VDINDKPDS----SEYKNAFEIILKDGNSVIFSAKNAEEKNNWMAALIS 107 (112)
T ss_pred eEEEEcCCC----cccCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 566655542 246899999998655566666667778899999863
No 57
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=41.72 E-value=37 Score=28.82 Aligned_cols=36 Identities=36% Similarity=0.540 Sum_probs=29.7
Q ss_pred ceeHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHH
Q 024795 83 ELTATELESLRSELADLEDREAHLKAQLEHVDEILR 118 (262)
Q Consensus 83 elt~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLR 118 (262)
-++..|++..+.+++.+.++|+.|..+++..-+-++
T Consensus 63 ~v~~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~ 98 (152)
T PF07321_consen 63 VVSLKELEKWQQQVASLREREAELEQQLAEAEEQLE 98 (152)
T ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 367789999999999999999999988876655544
No 58
>PF14301 DUF4376: Domain of unknown function (DUF4376)
Probab=41.27 E-value=71 Score=23.54 Aligned_cols=58 Identities=28% Similarity=0.324 Sum_probs=39.4
Q ss_pred hhhhhhHHHhhhccc-CCCccccCCCCccccceeHHHHHHHHhhhcChH----HHHHHHHHhhhh
Q 024795 53 RKLKSAAVMLNMFSL-RGLPWVSSSDGQEKVELTATELESLRSELADLE----DREAHLKAQLEH 112 (262)
Q Consensus 53 r~~k~aas~l~lfs~-~~~~W~s~~~~~ekvelt~~EvesLR~Ela~~e----ErEa~lkAqLe~ 112 (262)
.++-++..+.+.-.. ..+.|.. .+...|.||++++-.+-..++.-. .|+..||++++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~W~~--adn~~v~lt~~~l~~~~~a~~~~~~~~~~~~~~lk~~i~a 101 (111)
T PF14301_consen 39 ANLAGAVAAAQAAGLPESFFWKD--ADNSFVPLTAEQLIALAQAMAAHVQACFQRARALKAAIEA 101 (111)
T ss_pred HHHHHHHHHHHhcCCCCceeccC--CCCCEeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554443 5678977 444459999999999888876543 577788887764
No 59
>PF15456 Uds1: Up-regulated During Septation
Probab=41.06 E-value=37 Score=27.93 Aligned_cols=29 Identities=34% Similarity=0.488 Sum_probs=26.8
Q ss_pred ceeHHHHHHHHhhhcChHHHHHHHHHhhh
Q 024795 83 ELTATELESLRSELADLEDREAHLKAQLE 111 (262)
Q Consensus 83 elt~~EvesLR~Ela~~eErEa~lkAqLe 111 (262)
-|+..||++|..|+..++.|-..+++.|.
T Consensus 18 iLs~eEVe~LKkEl~~L~~R~~~lr~kl~ 46 (124)
T PF15456_consen 18 ILSFEEVEELKKELRSLDSRLEYLRRKLA 46 (124)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999998887
No 60
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=40.88 E-value=39 Score=27.62 Aligned_cols=25 Identities=8% Similarity=0.359 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhhhhHHHHHHhhhcc
Q 024795 99 LEDREAHLKAQLEHVDEILRSARLS 123 (262)
Q Consensus 99 ~eErEa~lkAqLe~iDEvLRsarls 123 (262)
+.++.+.+.+++..+.+.|..|++-
T Consensus 47 ak~~~~~~e~ri~~L~~~L~~a~iv 71 (151)
T TIGR01462 47 AKEEQGFNEGRIAELEDLLANAQVI 71 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccc
Confidence 3667788899999999999999863
No 61
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=40.15 E-value=35 Score=27.31 Aligned_cols=39 Identities=36% Similarity=0.529 Sum_probs=29.4
Q ss_pred ccceeHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHHh
Q 024795 81 KVELTATELESLRSELADLEDREAHLKAQLEHVDEILRS 119 (262)
Q Consensus 81 kvelt~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLRs 119 (262)
.++-...+++.+..|++.+++++.++++++.+....++.
T Consensus 74 ~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 74 DVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455777888888888888888888888877666654
No 62
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=39.71 E-value=27 Score=26.34 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=26.4
Q ss_pred cccceeHHHHHHHHhhhcChHHHHHHHHHhhhhH
Q 024795 80 EKVELTATELESLRSELADLEDREAHLKAQLEHV 113 (262)
Q Consensus 80 ekvelt~~EvesLR~Ela~~eErEa~lkAqLe~i 113 (262)
+.++-..+|+..+..+|+.+|+....+.++|.++
T Consensus 67 ~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 67 EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888888888888777653
No 63
>PLN02866 phospholipase D
Probab=39.64 E-value=40 Score=36.79 Aligned_cols=77 Identities=21% Similarity=0.430 Sum_probs=49.0
Q ss_pred ccccceeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCCCccc-------------CCCceeEEEEEeee-cceeee
Q 024795 148 DDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITR-------------ENGEMQYCFYILTR-HGLRIE 213 (262)
Q Consensus 148 DDWlpRFVVl~G~cif~yL~stdlsPQdStllsDIVEVg~lP~f~r-------------Edge~~yaFyIlTr-hGLR~E 213 (262)
+.|--||.||.-+|+.|.-. |-+ .-+.||+-+..+|.... |...++|.|.|.+. .-|.+.
T Consensus 216 ~~w~k~w~v~k~~~l~~~~~-----p~~-~~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~~~r~l~l~ 289 (1068)
T PLN02866 216 DNWQKVWAVLKPGFLALLED-----PFD-AKPLDIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTCGNRSIRLR 289 (1068)
T ss_pred CchheeEEEEeccEEEEEec-----CCC-CceeEEEEEecccccccCCCcceeecccccccCCCcceEEEecCceEEEEE
Confidence 57999999999999987422 322 33677777777772222 22344566655521 125566
Q ss_pred ecccceeehhhHHHHhhcc
Q 024795 214 CSSISKIQVYSWLSALQTD 232 (262)
Q Consensus 214 CSS~skiQVDsWL~al~~d 232 (262)
|.| ..++.-|+.+|+.=
T Consensus 290 ~~s--~~~~~~w~~ai~~~ 306 (1068)
T PLN02866 290 TKS--SAKVKDWVAAINDA 306 (1068)
T ss_pred ECC--HHHHHHHHHHHHHH
Confidence 654 56788999999843
No 64
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=39.16 E-value=27 Score=29.49 Aligned_cols=38 Identities=34% Similarity=0.490 Sum_probs=29.1
Q ss_pred HHHHHHhhhcChHHHHHHHHHhhhhHHHHHHhhhccce
Q 024795 88 ELESLRSELADLEDREAHLKAQLEHVDEILRSARLSGY 125 (262)
Q Consensus 88 EvesLR~Ela~~eErEa~lkAqLe~iDEvLRsarlsgY 125 (262)
.+..+.-||..+|.||.+||+|...+-+.-+.+.+--|
T Consensus 73 ~l~~~~~~L~~Le~r~e~Lk~~~~~~~~~~~~~~a~~~ 110 (120)
T PF04521_consen 73 QLSDLNLELEKLERREEQLKTQIQVLTAAAKLAKAPVY 110 (120)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 56677788899999999999998876666666555444
No 65
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=38.28 E-value=65 Score=24.93 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=48.8
Q ss_pred ccceeEeeecceeEeEeeeCCC---CCCCcceeehhhhccCCCCcccCC-CceeEEEEEeeecceeeeecccceeehhhH
Q 024795 150 WLPRFIVLHGSCIFFYLLSTDL---SPQDSTVLSDVVEVASLPSITREN-GEMQYCFYILTRHGLRIECSSISKIQVYSW 225 (262)
Q Consensus 150 WlpRFVVl~G~cif~yL~stdl---sPQdStllsDIVEVg~lP~f~rEd-ge~~yaFyIlTrhGLR~ECSS~skiQVDsW 225 (262)
|-.+|.++.-.|+|..-..++= .+++.+-|.++. |-.+ +| ....++|-|.+.+ -.|..+-.+.-.-+.|
T Consensus 17 ~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~-V~~~-----~~~~~~~~~F~I~~~~-ks~~l~A~s~~Ek~~W 89 (99)
T cd01220 17 QQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGML-TEES-----EHEWGVPHCFTIFGGQ-CAITVAASTRAEKEKW 89 (99)
T ss_pred ceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceE-Eeec-----cCCcCCceeEEEEcCC-eEEEEECCCHHHHHHH
Confidence 4457777777777766555543 356666666552 3222 22 2456899998764 4477777777788999
Q ss_pred HHHhhc
Q 024795 226 LSALQT 231 (262)
Q Consensus 226 L~al~~ 231 (262)
+.+|+.
T Consensus 90 i~~i~~ 95 (99)
T cd01220 90 LADLSK 95 (99)
T ss_pred HHHHHH
Confidence 999873
No 66
>PF08848 DUF1818: Domain of unknown function (DUF1818); InterPro: IPR014947 This entry represents a small family of uncharacterised cyanobacterial proteins. ; PDB: 2IT9_A 2NVN_A.
Probab=37.26 E-value=9.4 Score=31.90 Aligned_cols=66 Identities=23% Similarity=0.385 Sum_probs=48.7
Q ss_pred cccceeHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHHhhhccceEEEeeecccCCCCCCCCCCCCcccccceeEeeec
Q 024795 80 EKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRSARLSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHG 159 (262)
Q Consensus 80 ekvelt~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLRsarlsgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~G 159 (262)
=-||||++|...|..=+..+.+--+.++.|| +-.=+++.=+----=|..|-|.| +.|=.|||..+|
T Consensus 27 WAiELT~~E~~~f~~Ll~~L~~q~~~i~~eL------M~EE~I~lE~E~~~~W~eleG~~--------~~~sLr~IL~~~ 92 (117)
T PF08848_consen 27 WAIELTEAEFNDFCRLLQQLAEQMQAIADEL------MDEESITLEAESDLWWMELEGYP--------HAWSLRLILNQG 92 (117)
T ss_dssp EEEEE-HHHHHHHHHHHHHHHHHHHCCHTTS------STTSEEEEEEEETTEEEEEEEET--------TEEEEEEEE-TC
T ss_pred hheeecHHHHHHHHHHHHHHHHHHHHHHHHh------cchhhheeeeccccEEEEecccc--------CceEEEEEEcCC
Confidence 3589999999999999988888777777766 33344555555555688888887 789999998887
No 67
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=37.16 E-value=34 Score=31.11 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=10.5
Q ss_pred CCCCccccceeHHHHHHHHhhhc
Q 024795 75 SSDGQEKVELTATELESLRSELA 97 (262)
Q Consensus 75 ~~~~~ekvelt~~EvesLR~Ela 97 (262)
.+.++++++-..+|+.++..+|+
T Consensus 204 ~~~D~~eL~~lr~eL~~~~~~i~ 226 (325)
T PF08317_consen 204 ESCDQEELEALRQELAEQKEEIE 226 (325)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHH
Confidence 34455555444444444444444
No 68
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=37.16 E-value=40 Score=27.99 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=26.0
Q ss_pred CCceeEEEEEeeecc-eeeeecccceeehhhHHHHhh
Q 024795 195 NGEMQYCFYILTRHG-LRIECSSISKIQVYSWLSALQ 230 (262)
Q Consensus 195 dge~~yaFyIlTrhG-LR~ECSS~skiQVDsWL~al~ 230 (262)
+.+.+|+|+|+.++| -.|+=...++-.=.+|+.||.
T Consensus 72 ~~~~~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~ 108 (116)
T cd01223 72 DTRWKYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALE 108 (116)
T ss_pred CcceEEEEEEEecCCCccEEEEeCCHHHHHHHHHHHH
Confidence 558899999999987 333333345566789999885
No 69
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.26 E-value=41 Score=27.92 Aligned_cols=33 Identities=30% Similarity=0.367 Sum_probs=25.0
Q ss_pred ceeHHHHHHHHhhhcChHHHHHHHHHhhhhHHH
Q 024795 83 ELTATELESLRSELADLEDREAHLKAQLEHVDE 115 (262)
Q Consensus 83 elt~~EvesLR~Ela~~eErEa~lkAqLe~iDE 115 (262)
+-...|++.|+.||+.+|.=-..||.|.++..+
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678888888888887777788888887653
No 70
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=34.84 E-value=53 Score=29.04 Aligned_cols=37 Identities=8% Similarity=0.230 Sum_probs=32.1
Q ss_pred ceeHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHHh
Q 024795 83 ELTATELESLRSELADLEDREAHLKAQLEHVDEILRS 119 (262)
Q Consensus 83 elt~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLRs 119 (262)
+-...-+..||.-+..++.|+.+|..+++..++..|.
T Consensus 23 ~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~ 59 (191)
T PTZ00446 23 DEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQ 59 (191)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778999999999999999999999999988763
No 71
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=34.72 E-value=38 Score=32.25 Aligned_cols=43 Identities=30% Similarity=0.445 Sum_probs=36.5
Q ss_pred CCCccccceeHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHH
Q 024795 76 SDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILR 118 (262)
Q Consensus 76 ~~~~ekvelt~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLR 118 (262)
....++|.-..++++.|+.|++.++.+.+.+++|+..++.+-.
T Consensus 67 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (525)
T TIGR02231 67 RPDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIRE 109 (525)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566778888899999999999999999999999988887753
No 72
>PRK04406 hypothetical protein; Provisional
Probab=34.20 E-value=72 Score=24.21 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=19.6
Q ss_pred HHHHHhhhcChHHHHHHHHHhhhhHHHHHHhhhccc
Q 024795 89 LESLRSELADLEDREAHLKAQLEHVDEILRSARLSG 124 (262)
Q Consensus 89 vesLR~Ela~~eErEa~lkAqLe~iDEvLRsarlsg 124 (262)
+|.|-..++.....-..|++||.++-+-|+++.-++
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~~~ 62 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYVVGKVKNMDSSN 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 444444444444444556667777766666655443
No 73
>PF06401 Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-terminal domain ; InterPro: IPR010483 The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family. The protein inhibits binding of all currently known ligands of these receptors []. Two different studies have provided conflicting domain boundaries.; GO: 0008201 heparin binding, 0050750 low-density lipoprotein particle receptor binding, 0005783 endoplasmic reticulum; PDB: 2FCW_A 2P03_A 2FTU_A 2P01_A.
Probab=34.09 E-value=54 Score=29.76 Aligned_cols=36 Identities=42% Similarity=0.586 Sum_probs=28.3
Q ss_pred ceeHHHHHHHHhhhcChHHHH---HHHHHhhhhHHHHHH
Q 024795 83 ELTATELESLRSELADLEDRE---AHLKAQLEHVDEILR 118 (262)
Q Consensus 83 elt~~EvesLR~Ela~~eErE---a~lkAqLe~iDEvLR 118 (262)
.+|..|++|||.||---|.|- .|+++||+...+-++
T Consensus 125 nFT~~ELeSlkeEL~HfE~rl~K~~H~~~el~~~~~k~~ 163 (214)
T PF06401_consen 125 NFTEDELESLKEELKHFEKRLEKHRHYQEELELSHEKLK 163 (214)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999888774 567888888777665
No 74
>PRK14161 heat shock protein GrpE; Provisional
Probab=33.98 E-value=38 Score=29.34 Aligned_cols=35 Identities=26% Similarity=0.485 Sum_probs=24.7
Q ss_pred cccceeHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 024795 80 EKVELTATELESLRSELADLEDREAHLKAQLEHVD 114 (262)
Q Consensus 80 ekvelt~~EvesLR~Ela~~eErEa~lkAqLe~iD 114 (262)
+-++-..+|++.|..|++++.+|-..++|.++|+-
T Consensus 19 ~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~r 53 (178)
T PRK14161 19 EIVETANPEITALKAEIEELKDKLIRTTAEIDNTR 53 (178)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566777777777777777777778777764
No 75
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=33.75 E-value=46 Score=23.90 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=29.1
Q ss_pred cceeHHHHHHHHhhhcChHHHHHHHHHhhhhH---HHHHHhhh
Q 024795 82 VELTATELESLRSELADLEDREAHLKAQLEHV---DEILRSAR 121 (262)
Q Consensus 82 velt~~EvesLR~Ela~~eErEa~lkAqLe~i---DEvLRsar 121 (262)
+.-+.+|++.+..+++.+++...+|+.+...+ |.|=+-||
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar 68 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAK 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 34567889999999999999999998876653 34444444
No 76
>PF15408 PH_7: Pleckstrin homology domain
Probab=33.11 E-value=33 Score=28.43 Aligned_cols=77 Identities=22% Similarity=0.340 Sum_probs=51.6
Q ss_pred ceeEeeecceeEeEeeeCCCCCC--CcceeehhhhccCCCCcccC--C-CceeEEEEEeeecceeeeecccceeehhhHH
Q 024795 152 PRFIVLHGSCIFFYLLSTDLSPQ--DSTVLSDVVEVASLPSITRE--N-GEMQYCFYILTRHGLRIECSSISKIQVYSWL 226 (262)
Q Consensus 152 pRFVVl~G~cif~yL~stdlsPQ--dStllsDIVEVg~lP~f~rE--d-ge~~yaFyIlTrhGLR~ECSS~skiQVDsWL 226 (262)
-|||||.|--+-||-- -.-| ||.-|+--|=.-+|-+|+.- + |-.-|-|-+..--|=|..|--.|+--..+|+
T Consensus 14 rRF~~L~~K~~~~~~~---KGG~~L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~L~~~~~~~~~~~FA~S~~~~~~Wi 90 (104)
T PF15408_consen 14 RRFVMLRSKQFNMYED---KGGQYLCSFQLSSSVVSHPMVNFSQAVPNLGINAFGFLMYSPSRRHVQCFASSKKVCQSWI 90 (104)
T ss_pred HHHHhhhhceeEEecc---cCCceeeeeehhhhhhhcccccccccCCCCCeeEEEEEEecCCcchhhhhhhHHHHHHHHH
Confidence 5899999988777632 1111 22222222333355556542 2 5566777788888999999999999999999
Q ss_pred HHhhc
Q 024795 227 SALQT 231 (262)
Q Consensus 227 ~al~~ 231 (262)
.|++.
T Consensus 91 ~~mN~ 95 (104)
T PF15408_consen 91 QVMNS 95 (104)
T ss_pred HHhcC
Confidence 99985
No 77
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=32.89 E-value=51 Score=24.87 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhh
Q 024795 86 ATELESLRSELADLEDREAHLKAQLEH 112 (262)
Q Consensus 86 ~~EvesLR~Ela~~eErEa~lkAqLe~ 112 (262)
+.|.+-++..|+.+.+|-..|.|||..
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~ 75 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAA 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555543
No 78
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=32.63 E-value=54 Score=27.36 Aligned_cols=73 Identities=21% Similarity=0.460 Sum_probs=44.9
Q ss_pred ceeEeeecceeEeEeeeCCCCCCCcceeehhhhccC--CCCcc----------------cC-CCceeEEEEEeeecceee
Q 024795 152 PRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVAS--LPSIT----------------RE-NGEMQYCFYILTRHGLRI 212 (262)
Q Consensus 152 pRFVVl~G~cif~yL~stdlsPQdStllsDIVEVg~--lP~f~----------------rE-dge~~yaFyIlTrhGLR~ 212 (262)
|=.|-|+..|++||.+-.|..|-.----.|+=++.. .|.+. +| ++.|=||.=++
T Consensus 22 Pf~vwLrd~~V~YfvLradp~p~~~~~~~d~Dd~~~~~~p~~~~~~~~~~~~~~~~~~vheq~dGti~Amc~t------- 94 (126)
T PF14784_consen 22 PFSVWLRDKCVYYFVLRADPKPPEEFEKEDIDDVSNLYYPFWLDKEIDRGNWDEKKFSVHEQEDGTIFAMCMT------- 94 (126)
T ss_pred CcEEEEcCceEEEEEEeCCCCCccccccccCCCcccccccccccCcccccccccCCcceeEeccceEEEEEec-------
Confidence 445778999999999999998877544444444432 23221 22 22444554332
Q ss_pred eecccceeehhhHHHHhhccc
Q 024795 213 ECSSISKIQVYSWLSALQTDC 233 (262)
Q Consensus 213 ECSS~skiQVDsWL~al~~d~ 233 (262)
...++--.-+|++-|+.+.
T Consensus 95 --g~~~~~sL~~WI~~Lq~~N 113 (126)
T PF14784_consen 95 --GTSDKDSLLSWIRGLQETN 113 (126)
T ss_pred --cCCCHHHHHHHHHHHHhhC
Confidence 2345666789999998653
No 79
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=32.03 E-value=26 Score=26.21 Aligned_cols=38 Identities=21% Similarity=0.397 Sum_probs=31.9
Q ss_pred HHhhhcChHHHHHHHHHhhhhHHHHHHhhhccceEEEeeecccCCCC
Q 024795 92 LRSELADLEDREAHLKAQLEHVDEILRSARLSGYLYIRTRWKPLPGE 138 (262)
Q Consensus 92 LR~Ela~~eErEa~lkAqLe~iDEvLRsarlsgYLyiRtRW~~LpgE 138 (262)
++.-+..+.+|-..+..-++-+|.++.. .+.|.-||-|
T Consensus 41 I~k~I~~~~~R~~li~~~i~~i~~~~~~---------~~~w~~LP~E 78 (97)
T PF09372_consen 41 IKKIIENAIKRYKLINKAIEVIDNICDD---------NNYWNILPIE 78 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC---------CCchhhCCHH
Confidence 4566778889999999999999998876 7889999965
No 80
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=32.02 E-value=45 Score=22.35 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=17.5
Q ss_pred hhhHHHHHHhhhccceEEEeee
Q 024795 110 LEHVDEILRSARLSGYLYIRTR 131 (262)
Q Consensus 110 Le~iDEvLRsarlsgYLyiRtR 131 (262)
..+.+|++.-|+-.||-+..-.
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft~~e 47 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFTEEE 47 (49)
T ss_pred cCCHHHHHHHHHHcCCCCCHHH
Confidence 4478999999999999765443
No 81
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=31.98 E-value=57 Score=25.84 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=28.0
Q ss_pred ceeHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 024795 83 ELTATELESLRSELADLEDREAHLKAQLEHVD 114 (262)
Q Consensus 83 elt~~EvesLR~Ela~~eErEa~lkAqLe~iD 114 (262)
|=..+|.+....+|+.+++|+.+|+.|+..+.
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568899999999999999999999998876
No 82
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=31.60 E-value=44 Score=27.63 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=34.7
Q ss_pred eeHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHH------hhhccceEEEee
Q 024795 84 LTATELESLRSELADLEDREAHLKAQLEHVDEILR------SARLSGYLYIRT 130 (262)
Q Consensus 84 lt~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLR------sarlsgYLyiRt 130 (262)
.+..|++..+.++..++.+...++++|+...+-++ .|-++|++-.+.
T Consensus 51 ~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~AP~dG~V~~~~ 103 (265)
T TIGR00999 51 IPRQEFESAEYALEEAQAEVQAAKSELRSAREAKDGSYVEVRSPFDGYITQKS 103 (265)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCeEEEECCCCeEEEEEE
Confidence 46678888888888888888888888876655444 566788877653
No 83
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=31.36 E-value=74 Score=26.59 Aligned_cols=25 Identities=8% Similarity=0.182 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhhhhHHHHHHhhhcc
Q 024795 99 LEDREAHLKAQLEHVDEILRSARLS 123 (262)
Q Consensus 99 ~eErEa~lkAqLe~iDEvLRsarls 123 (262)
+.++.+++.+++..+...|+.|++-
T Consensus 50 ak~~~~~le~rI~~L~~~L~~A~ii 74 (156)
T TIGR01461 50 GKKRLREIDRRVRFLTKRLENLKVV 74 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCEEe
Confidence 5567788999999999999999753
No 84
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.35 E-value=38 Score=26.83 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=36.4
Q ss_pred CCccccceeHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHHh
Q 024795 77 DGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRS 119 (262)
Q Consensus 77 ~~~ekvelt~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLRs 119 (262)
.-+.+++-..+|++.|+.+.+.++++-..|+...+-|+|+.|.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 3467788888999999999999999999998877888888775
No 85
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=31.24 E-value=66 Score=24.88 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhHHHH
Q 024795 86 ATELESLRSELADLEDREAHLKAQLEHVDEI 116 (262)
Q Consensus 86 ~~EvesLR~Ela~~eErEa~lkAqLe~iDEv 116 (262)
...+.+|+..+.+++++-..|+-.|..||+|
T Consensus 41 ~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~I 71 (99)
T PF10046_consen 41 KDIAAGLEKNLEDLNQKYEELQPYLQQIDQI 71 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888888888888875
No 86
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=31.07 E-value=40 Score=30.81 Aligned_cols=44 Identities=36% Similarity=0.459 Sum_probs=32.1
Q ss_pred ccccceeHHHHHHHHhhhcChHHHHHHHH----HhhhhHHHHHHhhhc
Q 024795 79 QEKVELTATELESLRSELADLEDREAHLK----AQLEHVDEILRSARL 122 (262)
Q Consensus 79 ~ekvelt~~EvesLR~Ela~~eErEa~lk----AqLe~iDEvLRsarl 122 (262)
.++.-|+.+|-|.||.||+..||--.-|+ |.=.|.-|+=|---|
T Consensus 36 s~~~~LSe~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGl 83 (208)
T KOG4010|consen 36 SEFEALSEEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLGL 83 (208)
T ss_pred hHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 35667899999999999999998766554 444577777665443
No 87
>PRK11239 hypothetical protein; Provisional
Probab=30.79 E-value=36 Score=31.09 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=13.4
Q ss_pred eHHHHHHHHhhhcChHHHHHHHHHhh
Q 024795 85 TATELESLRSELADLEDREAHLKAQL 110 (262)
Q Consensus 85 t~~EvesLR~Ela~~eErEa~lkAqL 110 (262)
..++|..|+.|+|.++++-++|.+||
T Consensus 188 Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 188 LQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555444
No 88
>PRK14158 heat shock protein GrpE; Provisional
Probab=30.70 E-value=47 Score=29.32 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=28.9
Q ss_pred CCCccccceeHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 024795 76 SDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVD 114 (262)
Q Consensus 76 ~~~~ekvelt~~EvesLR~Ela~~eErEa~lkAqLe~iD 114 (262)
.+..+.++-...+++.|..|++++.++-..+.|.++|+-
T Consensus 36 ~~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~R 74 (194)
T PRK14158 36 VAAADRIKELEEALAAKEAEAAANWDKYLRERADLENYR 74 (194)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667788888888888888888888887753
No 89
>PRK14147 heat shock protein GrpE; Provisional
Probab=30.52 E-value=59 Score=27.91 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=28.2
Q ss_pred cccceeHHHHHHHHhhhcChHHHHHHHHHhhhhHHH
Q 024795 80 EKVELTATELESLRSELADLEDREAHLKAQLEHVDE 115 (262)
Q Consensus 80 ekvelt~~EvesLR~Ela~~eErEa~lkAqLe~iDE 115 (262)
..++-..++++.|+.|++++.+|-..+.|.++|+-.
T Consensus 18 ~~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rk 53 (172)
T PRK14147 18 PETDPLKAEVESLRSEIALVKADALRERADLENQRK 53 (172)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445678899999999999998888898888643
No 90
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=30.05 E-value=50 Score=27.71 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhc
Q 024795 100 EDREAHLKAQLEHVDEILRSARL 122 (262)
Q Consensus 100 eErEa~lkAqLe~iDEvLRsarl 122 (262)
.++.+++.+++..+...|+.|++
T Consensus 53 k~~q~~~e~RI~~L~~~L~~A~i 75 (158)
T PRK05892 53 ADELARLDDRINELDRRLRTGPT 75 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhCEE
Confidence 44667788999999999999987
No 91
>PF03836 RasGAP_C: RasGAP C-terminus; InterPro: IPR000593 Ras GTPase-activating protein (rasGAP) is a major contributor to the down-regulation of ras by facilitating GTP hydrolysis of activated ras. In addition, GAP participates in the down-stream effector system of the ras signalling pathway. Abnormal signal transduction involving activated ras genes plays a major role in the development of a variety of tumours. Depending on the precise genetic alteration, its location within the gene and the effects it exerts on protein function, rasGAP can theoretically function as either an oncogene or as a tumour suppressor gene [].; GO: 0005099 Ras GTPase activator activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3ISU_A 3IEZ_A 4EZA_B 1X0H_A.
Probab=29.80 E-value=18 Score=29.40 Aligned_cols=40 Identities=30% Similarity=0.493 Sum_probs=0.0
Q ss_pred ceeHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHHhhhc
Q 024795 83 ELTATELESLRSELADLEDREAHLKAQLEHVDEILRSARL 122 (262)
Q Consensus 83 elt~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLRsarl 122 (262)
+-..+|++.|+.=+..+++....|..||+..++-+..++-
T Consensus 47 ~~r~~El~~l~~tl~~L~~k~~~l~~ql~~Y~~Yi~~~l~ 86 (142)
T PF03836_consen 47 EQRKQELEKLRQTLKNLNEKNKFLEEQLDSYNEYIKNCLS 86 (142)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456899999999999999999999999988877766553
No 92
>PRK14155 heat shock protein GrpE; Provisional
Probab=29.72 E-value=58 Score=28.95 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=27.8
Q ss_pred cceeHHHHHHHHhhhcChHHHHHHHHHhhhhHHH
Q 024795 82 VELTATELESLRSELADLEDREAHLKAQLEHVDE 115 (262)
Q Consensus 82 velt~~EvesLR~Ela~~eErEa~lkAqLe~iDE 115 (262)
.+-...+++.|+.|++++++|-..++|.+||+-.
T Consensus 15 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RK 48 (208)
T PRK14155 15 ADDAAQEIEALKAEVAALKDQALRYAAEAENTKR 48 (208)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666778999999999999988888888888643
No 93
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=29.47 E-value=41 Score=25.38 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=9.9
Q ss_pred HHHHhhhcChHHHHHHHHHhhhhH
Q 024795 90 ESLRSELADLEDREAHLKAQLEHV 113 (262)
Q Consensus 90 esLR~Ela~~eErEa~lkAqLe~i 113 (262)
+.|..++..+++.-..+.++++.+
T Consensus 97 ~~l~~~~~~l~~~~~~~~~~~~~l 120 (129)
T cd00890 97 ETLEKQIEKLEKQLEKLQDQITEL 120 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 94
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=29.37 E-value=1.5e+02 Score=26.31 Aligned_cols=85 Identities=22% Similarity=0.311 Sum_probs=52.0
Q ss_pred cceEEEeeecccCCC-CCCCCCCCCcccccceeEeeecceeEeEeeeCCCCCCCcceeehhhhccC-CCCcccCCCceeE
Q 024795 123 SGYLYIRTRWKPLPG-EPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVAS-LPSITRENGEMQY 200 (262)
Q Consensus 123 sgYLyiRtRW~~Lpg-EpppiDDtdVDDWlpRFVVl~G~cif~yL~stdlsPQdStllsDIVEVg~-lP~f~rEdge~~y 200 (262)
+-+|.+|+|+.+++| .+|+.-=..++|+=+.=+.=.|.+...-|+.+|+.+ |-.+--=.++.|. +|-+..+..| .
T Consensus 126 a~~l~v~k~y~~~~g~~~~~~vvg~~~dv~~~~~~g~~~~~~~~llp~~~~~-~~~~~~~~~~PG~~~~~~~~H~~e--h 202 (260)
T TIGR03214 126 ARFFLYKKRYQPVEGLHAPELVVGNEKDIEPEPYEGMDDVILTTLLPKELAF-DMNVHILSFEPGASHPYIETHVME--H 202 (260)
T ss_pred EEEEEEEeeeEEcCCCCCCCeeecCHHHCCccccCCCCcEEEEEeCchhcCC-CcEEEEEEECCCcccCCcccccce--e
Confidence 346889999999999 888765666666655544434455543333677777 4444434455554 4433333322 3
Q ss_pred EEEEeeecce
Q 024795 201 CFYILTRHGL 210 (262)
Q Consensus 201 aFyIlTrhGL 210 (262)
-+|||.=+|+
T Consensus 203 ~~yiL~G~G~ 212 (260)
T TIGR03214 203 GLYVLEGKGV 212 (260)
T ss_pred EEEEEeceEE
Confidence 4499988886
No 95
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.07 E-value=46 Score=30.52 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=15.7
Q ss_pred CCCccccceeHHHHHHHHhhhcC
Q 024795 76 SDGQEKVELTATELESLRSELAD 98 (262)
Q Consensus 76 ~~~~ekvelt~~EvesLR~Ela~ 98 (262)
++.+|+++..++|-|.|+++...
T Consensus 45 s~k~eel~~~~~eEe~LKs~~q~ 67 (211)
T COG3167 45 SGKLEELEELEAEEEELKSTYQQ 67 (211)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888887776666555433
No 96
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=29.02 E-value=89 Score=22.77 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHHhh
Q 024795 86 ATELESLRSELADLEDREAHLKAQLEHVDEILRSA 120 (262)
Q Consensus 86 ~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLRsa 120 (262)
.+++..|+.++..+...-.+++.++..++.+++.-
T Consensus 4 ~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL 38 (106)
T PF01920_consen 4 QNKFQELNQQLQQLEQQIQQLERQLRELELTLEEL 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999999999998888754
No 97
>PRK14162 heat shock protein GrpE; Provisional
Probab=28.80 E-value=54 Score=28.94 Aligned_cols=40 Identities=25% Similarity=0.399 Sum_probs=31.5
Q ss_pred CCCCccccceeHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 024795 75 SSDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVD 114 (262)
Q Consensus 75 ~~~~~ekvelt~~EvesLR~Ela~~eErEa~lkAqLe~iD 114 (262)
....+..++-..++++.|+.+++++.++-..+.|.++|+-
T Consensus 34 ~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~r 73 (194)
T PRK14162 34 DQEKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQ 73 (194)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666778889999999999888888888888864
No 98
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=28.01 E-value=60 Score=25.51 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=21.0
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHH
Q 024795 86 ATELESLRSELADLEDREAHLKAQLEHVDEILR 118 (262)
Q Consensus 86 ~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLR 118 (262)
+.++..|+.+|+.++.+-+.+.|+|+-|+..++
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344555666667777777777777776665543
No 99
>PRK14143 heat shock protein GrpE; Provisional
Probab=27.93 E-value=50 Score=29.94 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=28.5
Q ss_pred CCccccceeHHHHHHHHhhhcChHHHHHHHHHhhhhHHH
Q 024795 77 DGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDE 115 (262)
Q Consensus 77 ~~~ekvelt~~EvesLR~Ela~~eErEa~lkAqLe~iDE 115 (262)
+..++++-..++++.|+.|++++.+|-..+.|.++|+-.
T Consensus 64 ~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RK 102 (238)
T PRK14143 64 DNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRK 102 (238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667778888888888888877777777777543
No 100
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=27.77 E-value=1.2e+02 Score=25.42 Aligned_cols=70 Identities=23% Similarity=0.335 Sum_probs=42.7
Q ss_pred cceeEeEee--eCCCCCCCcceeehhhhccCCCCcccCCCceeEEEEEeeecceeeeecccceeehhhHHHHhh
Q 024795 159 GSCIFFYLL--STDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVYSWLSALQ 230 (262)
Q Consensus 159 G~cif~yL~--stdlsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVDsWL~al~ 230 (262)
|.=+.||+- ----.|--++..+.|+||-.---+--.|.+ +-|-+=-.-+..|-=--...-|+.|||+.|+
T Consensus 34 g~~le~~~~~pPKssrpk~~v~C~~I~EvR~tt~LEmPD~~--nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir 105 (107)
T cd01231 34 GYMLEFYLPLPPKSSKPKLQVACSSISEVRECTRLEMPDNL--YTFVLKVDDNTDIIFEVGDEQQLNSWLAELR 105 (107)
T ss_pred CceEEEEccCCCCCCCCccccchhhhhhhhhcccccccCcc--cEEEEEecCCceEEEEcCCHHHHHHHHHHHh
Confidence 455666665 445567888999999999764444333433 3333322223333333345679999999987
No 101
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=27.43 E-value=44 Score=23.22 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=17.8
Q ss_pred cceeHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHH
Q 024795 82 VELTATELESLRSELADLEDREAHLKAQLEHVDEILR 118 (262)
Q Consensus 82 velt~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLR 118 (262)
+.-...+++.++.|..+++++-..|+.--+.|.++-|
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3334445555555555555555555444444444443
No 102
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=27.24 E-value=17 Score=28.62 Aligned_cols=28 Identities=39% Similarity=0.490 Sum_probs=1.6
Q ss_pred eHHHHHHHHhhhcChHHHHHHHHHhhhh
Q 024795 85 TATELESLRSELADLEDREAHLKAQLEH 112 (262)
Q Consensus 85 t~~EvesLR~Ela~~eErEa~lkAqLe~ 112 (262)
+..++++|++|++.+.++.+.|..|..+
T Consensus 18 LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 18 LESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp -------------------------HT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3467888888888888888888888877
No 103
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=26.77 E-value=36 Score=21.66 Aligned_cols=16 Identities=38% Similarity=0.715 Sum_probs=12.6
Q ss_pred HHHHHHHhhhcChHHH
Q 024795 87 TELESLRSELADLEDR 102 (262)
Q Consensus 87 ~EvesLR~Ela~~eEr 102 (262)
.|++.||+.|.|+|-+
T Consensus 1 ~E~~rlr~rI~dLer~ 16 (23)
T PF04508_consen 1 REMNRLRNRISDLERQ 16 (23)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 3788999999888653
No 104
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=26.37 E-value=92 Score=26.98 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=34.6
Q ss_pred eHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHHhhhccceEEEe
Q 024795 85 TATELESLRSELADLEDREAHLKAQLEHVDEILRSARLSGYLYIR 129 (262)
Q Consensus 85 t~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLRsarlsgYLyiR 129 (262)
+..|+-.+..||...++.-.++++|+..+|+-..++.+.=+||-.
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~sti~i~l~~~ 204 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYSTITISLYEP 204 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEEEEEEec
Confidence 455566667777777777788888888999998888887666655
No 105
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=26.31 E-value=37 Score=27.68 Aligned_cols=16 Identities=38% Similarity=0.656 Sum_probs=11.2
Q ss_pred EEEEEeeecc-eeeeec
Q 024795 200 YCFYILTRHG-LRIECS 215 (262)
Q Consensus 200 yaFyIlTrhG-LR~ECS 215 (262)
|+|||..||| |=|-..
T Consensus 2 yslyI~nr~G~lIy~~~ 18 (142)
T PF04099_consen 2 YSLYIFNRSGGLIYYRE 18 (142)
T ss_dssp EEEEEE-TTS-EEEEEE
T ss_pred eEEEEEeCCcceeeehh
Confidence 8999999995 555443
No 106
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=26.29 E-value=87 Score=25.80 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHHh
Q 024795 86 ATELESLRSELADLEDREAHLKAQLEHVDEILRS 119 (262)
Q Consensus 86 ~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLRs 119 (262)
..-++.+..||..++.|...++.+++.|-+.++.
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~ 195 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEISENIKK 195 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888899999999999999999887764
No 107
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=26.14 E-value=36 Score=25.64 Aligned_cols=38 Identities=34% Similarity=0.403 Sum_probs=31.6
Q ss_pred CCCccccCCCCccccceeHHHHHHHHhhhcChHHHHHHHHHh
Q 024795 68 RGLPWVSSSDGQEKVELTATELESLRSELADLEDREAHLKAQ 109 (262)
Q Consensus 68 ~~~~W~s~~~~~ekvelt~~EvesLR~Ela~~eErEa~lkAq 109 (262)
.++.|.+ .|-.+.-.+.+..+|..|+.+|.|-+.|.||
T Consensus 42 ~kldlVt----REEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 42 SKLDLVT----REEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHCCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4566665 5667888999999999999999999999875
No 108
>PRK02793 phi X174 lysis protein; Provisional
Probab=26.04 E-value=1.1e+02 Score=22.90 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=24.1
Q ss_pred HHHHHHHhhhcChHHHHHHHHHhhhhHHHHHHhhhccc
Q 024795 87 TELESLRSELADLEDREAHLKAQLEHVDEILRSARLSG 124 (262)
Q Consensus 87 ~EvesLR~Ela~~eErEa~lkAqLe~iDEvLRsarlsg 124 (262)
.-++.|-..++.....-..|++||.++-+-|+.++-++
T Consensus 22 ~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~ 59 (72)
T PRK02793 22 ITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPSN 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34555555555555555677778888877777766544
No 109
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=25.98 E-value=65 Score=24.20 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=18.5
Q ss_pred HHHHHHHhhhhHHHHHHhhhcc
Q 024795 102 REAHLKAQLEHVDEILRSARLS 123 (262)
Q Consensus 102 rEa~lkAqLe~iDEvLRsarls 123 (262)
=++|.+.-++||+++|+.|-++
T Consensus 24 ~~~Q~~~v~~ni~~~L~~aG~~ 45 (101)
T cd06155 24 VEEQMESIFSKLREILQSNGLS 45 (101)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 4568899999999999998654
No 110
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=25.93 E-value=60 Score=24.22 Aligned_cols=34 Identities=18% Similarity=0.467 Sum_probs=24.2
Q ss_pred cccceeHHHHHHHHhhhcChHHHHHHHHHhhhhH
Q 024795 80 EKVELTATELESLRSELADLEDREAHLKAQLEHV 113 (262)
Q Consensus 80 ekvelt~~EvesLR~Ela~~eErEa~lkAqLe~i 113 (262)
.||.-...||..||.++..+.+--+.-..+|+|+
T Consensus 17 ~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 17 SKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566667788888888888777666666666654
No 111
>PRK02119 hypothetical protein; Provisional
Probab=25.91 E-value=82 Score=23.69 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=16.8
Q ss_pred HHHHHhhhcChHHHHHHHHHhhhhHHHHHHhhh
Q 024795 89 LESLRSELADLEDREAHLKAQLEHVDEILRSAR 121 (262)
Q Consensus 89 vesLR~Ela~~eErEa~lkAqLe~iDEvLRsar 121 (262)
++.|-..++.-...-..|++||.++-+-|+..+
T Consensus 25 ie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 25 LEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444433333455666666666565544
No 112
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=25.82 E-value=64 Score=25.39 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=15.5
Q ss_pred HHHHhhhcChHHHHHHHHHhhhhHHHHH
Q 024795 90 ESLRSELADLEDREAHLKAQLEHVDEIL 117 (262)
Q Consensus 90 esLR~Ela~~eErEa~lkAqLe~iDEvL 117 (262)
+-|+..++.++++-+.|++.++.+++.+
T Consensus 83 ~~l~~~~~~l~~~~~~l~~~~~~L~~~~ 110 (118)
T cd04776 83 EKIEKRRAELEQQRRDIDAALAELDAAE 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544
No 113
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=25.49 E-value=67 Score=29.22 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=24.7
Q ss_pred eeHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHH
Q 024795 84 LTATELESLRSELADLEDREAHLKAQLEHVDEILR 118 (262)
Q Consensus 84 lt~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLR 118 (262)
=...|++.++.+|+.++++-+.+++++.+.+.++.
T Consensus 234 el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 234 ELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777778888887776665
No 114
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=25.07 E-value=39 Score=27.02 Aligned_cols=37 Identities=32% Similarity=0.511 Sum_probs=21.8
Q ss_pred CccccceeHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 024795 78 GQEKVELTATELESLRSELADLEDREAHLKAQLEHVD 114 (262)
Q Consensus 78 ~~ekvelt~~EvesLR~Ela~~eErEa~lkAqLe~iD 114 (262)
.+++++-..++++.|+.+++++.++-..+.|.++|+=
T Consensus 9 ~~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~ 45 (165)
T PF01025_consen 9 EDEEIEELEEELEELEKEIEELKERLLRLQAEFENYR 45 (165)
T ss_dssp CHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555666666666666666666666665543
No 115
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=25.03 E-value=88 Score=26.20 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=19.1
Q ss_pred hHHHHHHHHHhhhhHHHHHHhhhc
Q 024795 99 LEDREAHLKAQLEHVDEILRSARL 122 (262)
Q Consensus 99 ~eErEa~lkAqLe~iDEvLRsarl 122 (262)
+.++.+.+.+++..++..|+.|++
T Consensus 52 Ak~~~~~~e~rI~~L~~~L~~A~i 75 (157)
T PRK01885 52 GKKRLREIDRRVRFLTKRLENLKV 75 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHccCEE
Confidence 344567888899999999998886
No 116
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=24.64 E-value=1.2e+02 Score=27.43 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=32.3
Q ss_pred eeHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHHhhhccceEE
Q 024795 84 LTATELESLRSELADLEDREAHLKAQLEHVDEILRSARLSGYLY 127 (262)
Q Consensus 84 lt~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLRsarlsgYLy 127 (262)
.+..+++.|+.++..+......++.+++++-+-+...+..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLIV 46 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 34457777777777777777778888888888887777766653
No 117
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=24.61 E-value=1.1e+02 Score=23.02 Aligned_cols=38 Identities=32% Similarity=0.434 Sum_probs=33.0
Q ss_pred CCCccccceeHHHHHHHHhhhcChHHHHHHHHHhhhhH
Q 024795 76 SDGQEKVELTATELESLRSELADLEDREAHLKAQLEHV 113 (262)
Q Consensus 76 ~~~~ekvelt~~EvesLR~Ela~~eErEa~lkAqLe~i 113 (262)
....++++-..++++.|+.+++.++.+.+-+++|++.+
T Consensus 66 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 66 ESDSPELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667888889999999999999999999999998765
No 118
>PF15406 PH_6: Pleckstrin homology domain
Probab=24.56 E-value=1.4e+02 Score=25.04 Aligned_cols=63 Identities=25% Similarity=0.483 Sum_probs=48.5
Q ss_pred cceeEeEeeeCC-CCCCCcceeehhhhccCCCCcccCCCceeEEEEEeeecceeeeecccceeehhhHHHHhhc
Q 024795 159 GSCIFFYLLSTD-LSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVYSWLSALQT 231 (262)
Q Consensus 159 G~cif~yL~std-lsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVDsWL~al~~ 231 (262)
|-=+.||-++.| -+|.+-+=|+|++|+- .+|-..|.|=+ .-|-..||-+|.-+ =|+|+.+|..
T Consensus 48 GKGLLF~~K~~dka~P~GiinLadase~~-------~~g~~kF~f~~-~G~khtF~A~s~aE--RD~Wv~~lk~ 111 (112)
T PF15406_consen 48 GKGLLFFSKAEDKASPSGIINLADASEPE-------KDGSNKFHFKI-KGHKHTFEAASAAE--RDNWVAQLKA 111 (112)
T ss_pred CceEEEEeccccccCCcceEehhhccccc-------cCCCceEEEEe-CCceeeeecCCHHH--hccHHHHhhc
Confidence 555788887655 3799999999999984 46666777666 66778899888776 5899998853
No 119
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=24.30 E-value=71 Score=28.07 Aligned_cols=21 Identities=48% Similarity=0.601 Sum_probs=16.5
Q ss_pred cceeHHHHHHHHhhhcChHHH
Q 024795 82 VELTATELESLRSELADLEDR 102 (262)
Q Consensus 82 velt~~EvesLR~Ela~~eEr 102 (262)
..|+.+|-|.||.||+..||-
T Consensus 24 ~~LsEeE~eeLr~EL~KvEeE 44 (162)
T PF04201_consen 24 EGLSEEEREELRSELAKVEEE 44 (162)
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 478888888888888887764
No 120
>PRK00295 hypothetical protein; Provisional
Probab=24.26 E-value=1.5e+02 Score=21.99 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=21.2
Q ss_pred HHHHHHHhhhcChHHHHHHHHHhhhhHHHHHHhhh
Q 024795 87 TELESLRSELADLEDREAHLKAQLEHVDEILRSAR 121 (262)
Q Consensus 87 ~EvesLR~Ela~~eErEa~lkAqLe~iDEvLRsar 121 (262)
.-++.|-..++.-...-..|++||..+-+-|+...
T Consensus 19 ~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 19 DTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555555555666777777766666654
No 121
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=24.26 E-value=1e+02 Score=25.74 Aligned_cols=53 Identities=21% Similarity=0.457 Sum_probs=38.4
Q ss_pred cccceeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCCCcc----------c-CCCceeEEEEEee
Q 024795 149 DWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSIT----------R-ENGEMQYCFYILT 206 (262)
Q Consensus 149 DWlpRFVVl~G~cif~yL~stdlsPQdStllsDIVEVg~lP~f~----------r-Edge~~yaFyIlT 206 (262)
-|--+|||+.+.=||||-...|-+.|...+ +.+.+. .|. + ...+.-|-|.|++
T Consensus 19 gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~---vldl~~--~fhv~~V~asDVi~a~~kDiP~IF~I~~ 82 (112)
T cd01242 19 GWKKQYVVVSSRKILFYNDEQDKENSTPSM---ILDIDK--LFHVRPVTQGDVYRADAKEIPKIFQILY 82 (112)
T ss_pred CceEEEEEEeCCEEEEEecCccccCCCcEE---EEEccc--eeeeecccHHHeeecCcccCCeEEEEEe
Confidence 599999999999999999888877665444 444443 222 2 2347778899988
No 122
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=24.08 E-value=46 Score=33.35 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=10.2
Q ss_pred EEEeeecccCCCC
Q 024795 126 LYIRTRWKPLPGE 138 (262)
Q Consensus 126 LyiRtRW~~LpgE 138 (262)
+=.|||--.|-+.
T Consensus 70 ~DfRt~~Dsi~yk 82 (489)
T PF11853_consen 70 GDFRTRYDSIQYK 82 (489)
T ss_pred eEEEEEEeccccc
Confidence 4568888888888
No 123
>PRK11546 zraP zinc resistance protein; Provisional
Probab=24.02 E-value=67 Score=27.47 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.7
Q ss_pred cccCCCCccccceeHHHHHHHHhhhc
Q 024795 72 WVSSSDGQEKVELTATELESLRSELA 97 (262)
Q Consensus 72 W~s~~~~~ekvelt~~EvesLR~Ela 97 (262)
..+++.|++||.-.+.|+..||.+|.
T Consensus 81 l~~~~pD~~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 81 LTANPPDSSKINAVAKEMENLRQSLD 106 (143)
T ss_pred HcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999765
No 124
>smart00338 BRLZ basic region leucin zipper.
Probab=23.72 E-value=56 Score=22.95 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=12.4
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhH
Q 024795 86 ATELESLRSELADLEDREAHLKAQLEHV 113 (262)
Q Consensus 86 ~~EvesLR~Ela~~eErEa~lkAqLe~i 113 (262)
..+|+.|..|...+..+-++|..++..+
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 125
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=23.68 E-value=85 Score=31.57 Aligned_cols=41 Identities=32% Similarity=0.461 Sum_probs=33.4
Q ss_pred cccceeHHHHHHHHhhhcChHHHHHHH-HHhhhhHHHHHHhh
Q 024795 80 EKVELTATELESLRSELADLEDREAHL-KAQLEHVDEILRSA 120 (262)
Q Consensus 80 ekvelt~~EvesLR~Ela~~eErEa~l-kAqLe~iDEvLRsa 120 (262)
|-+||-.+|+-.|..|+|.+|||-|.. -.+-.+|-|.+.+.
T Consensus 317 dlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEsc 358 (455)
T KOG3850|consen 317 DLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALESC 358 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999999998865 45677888888775
No 126
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.47 E-value=99 Score=25.31 Aligned_cols=40 Identities=23% Similarity=0.275 Sum_probs=31.2
Q ss_pred cccceeHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHHh
Q 024795 80 EKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRS 119 (262)
Q Consensus 80 ekvelt~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLRs 119 (262)
...+....+++.+...++.+|+|-++|++-++.+|...|-
T Consensus 74 ~~~~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~ 113 (134)
T cd04779 74 KEQREVAQEVQLVCDQIDGLEHRLKQLKPIASQTDRAQRM 113 (134)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556778888888999999999998888888876664
No 127
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=23.28 E-value=99 Score=28.27 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHHh
Q 024795 86 ATELESLRSELADLEDREAHLKAQLEHVDEILRS 119 (262)
Q Consensus 86 ~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLRs 119 (262)
..++++||.|...++++-..+++|++.-|.+...
T Consensus 38 ~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~ 71 (308)
T PF11382_consen 38 EDQFDSLREENDELRAELDALQAQLNAADQFIAA 71 (308)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888777888888777766543
No 128
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.19 E-value=55 Score=33.70 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=28.0
Q ss_pred eeHHHHHHHHhhhcChHHHHHHHHHhhhhHHHH
Q 024795 84 LTATELESLRSELADLEDREAHLKAQLEHVDEI 116 (262)
Q Consensus 84 lt~~EvesLR~Ela~~eErEa~lkAqLe~iDEv 116 (262)
=..+||+.||+||......|..|..||..++.-
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~ 454 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNN 454 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Confidence 357899999999999999999999996665543
No 129
>PRK14154 heat shock protein GrpE; Provisional
Probab=23.06 E-value=72 Score=28.58 Aligned_cols=34 Identities=9% Similarity=0.227 Sum_probs=25.3
Q ss_pred ccceeHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 024795 81 KVELTATELESLRSELADLEDREAHLKAQLEHVD 114 (262)
Q Consensus 81 kvelt~~EvesLR~Ela~~eErEa~lkAqLe~iD 114 (262)
+++-..++++.|+.|++++.++-..++|..+|+-
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyR 86 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLR 86 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567788888888888888777888777754
No 130
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=23.01 E-value=1e+02 Score=28.02 Aligned_cols=67 Identities=30% Similarity=0.367 Sum_probs=47.1
Q ss_pred eHHHHHHHHhhhcChHHH---HHHHHHhhhhHHHHHHhhhcc-ceEEEeeecccCCCCCCCCCCCCcccccceeEeeecc
Q 024795 85 TATELESLRSELADLEDR---EAHLKAQLEHVDEILRSARLS-GYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGS 160 (262)
Q Consensus 85 t~~EvesLR~Ela~~eEr---Ea~lkAqLe~iDEvLRsarls-gYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~G~ 160 (262)
++.|-|.||.|++.++.+ -..|+++..++-+.|-++.-. .|=++-++=.. .+.|.|--+.|+-.|+
T Consensus 71 ~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~~~~~~~~~~a~Vi~----------~~~~~~~~~ivId~Gs 140 (284)
T COG1792 71 LALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKESSSDYDPIAARVIS----------RSPDPWSQTIVIDKGS 140 (284)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccceeeEEEE----------ecCCchhcEEEEecCc
Confidence 567788899888776654 567889999999999888776 46666554322 3445577777776665
Q ss_pred e
Q 024795 161 C 161 (262)
Q Consensus 161 c 161 (262)
=
T Consensus 141 ~ 141 (284)
T COG1792 141 N 141 (284)
T ss_pred c
Confidence 3
No 131
>PF08690 GET2: GET complex subunit GET2; InterPro: IPR014802 This family corresponds to the GET complex subunit GET2. The GET complex is involved in the retrieval of ER resident proteins from the Golgi []. ; PDB: 3SJD_D 3ZS9_C.
Probab=22.90 E-value=93 Score=28.99 Aligned_cols=29 Identities=41% Similarity=0.579 Sum_probs=19.3
Q ss_pred ceeHHHHHHHHhhhcChHHHHHHHHH-----hhhhHHHH
Q 024795 83 ELTATELESLRSELADLEDREAHLKA-----QLEHVDEI 116 (262)
Q Consensus 83 elt~~EvesLR~Ela~~eErEa~lkA-----qLe~iDEv 116 (262)
||++||-..||.| .|||.+|| +|..|=-.
T Consensus 1 els~aEkrRLrRE-----RReAKi~~GgaSaRLnKITg~ 34 (302)
T PF08690_consen 1 ELSEAEKRRLRRE-----RREAKIKAGGASARLNKITGQ 34 (302)
T ss_dssp ---HHHHHHHHHH-----HHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-----HHHHHHHCCCcHHHHHHHhcc
Confidence 7999999999975 68999973 55555443
No 132
>PRK09039 hypothetical protein; Validated
Probab=22.90 E-value=64 Score=29.96 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=4.0
Q ss_pred HHhhhhHHHHH
Q 024795 107 KAQLEHVDEIL 117 (262)
Q Consensus 107 kAqLe~iDEvL 117 (262)
++||..+++.|
T Consensus 150 r~Qla~le~~L 160 (343)
T PRK09039 150 RRQLAALEAAL 160 (343)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 133
>PRK02119 hypothetical protein; Provisional
Probab=22.81 E-value=1.6e+02 Score=22.18 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=21.3
Q ss_pred HHHHHHhhhcChHHHHHHHHHhhhhHHHHH
Q 024795 88 ELESLRSELADLEDREAHLKAQLEHVDEIL 117 (262)
Q Consensus 88 EvesLR~Ela~~eErEa~lkAqLe~iDEvL 117 (262)
|.+.+-.-|.++|+|-|+...-++.+++++
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v 32 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQAL 32 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677888888888777777776665
No 134
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=22.73 E-value=85 Score=32.65 Aligned_cols=78 Identities=24% Similarity=0.457 Sum_probs=59.9
Q ss_pred cccceeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCCCcccCCC------ceeEEEEEe------eecceeeeecc
Q 024795 149 DWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENG------EMQYCFYIL------TRHGLRIECSS 216 (262)
Q Consensus 149 DWlpRFVVl~G~cif~yL~stdlsPQdStllsDIVEVg~lP~f~rEdg------e~~yaFyIl------TrhGLR~ECSS 216 (262)
-|=--|+||+-+=+||.-+.|--.|-|=+.|.|+-+-.. |+--.| -|-|.|-|- -+.+|++-|+-
T Consensus 332 sWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snV---Yt~i~~rKkyksPTd~~f~~K~~~~~~~~r~lk~lCAE 408 (622)
T KOG3751|consen 332 SWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNV---YTGIGGRKKYKSPTDYGFCIKPNKLRNKRRFLKMLCAE 408 (622)
T ss_pred cceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCce---EEeecchhccCCCCCceEEeeeccccCcccceeeeecc
Confidence 577889999999999999999999999999988755332 222223 456777764 34899999986
Q ss_pred cceeehhhHHHHhh
Q 024795 217 ISKIQVYSWLSALQ 230 (262)
Q Consensus 217 ~skiQVDsWL~al~ 230 (262)
- +--.++||+||+
T Consensus 409 D-e~t~~~WltAiR 421 (622)
T KOG3751|consen 409 D-EQTRTCWLTAIR 421 (622)
T ss_pred c-chhHHHHHHHHH
Confidence 4 445799999998
No 135
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=22.60 E-value=99 Score=27.99 Aligned_cols=51 Identities=29% Similarity=0.451 Sum_probs=32.6
Q ss_pred ceeHHHHHHHHhhhcChHHHHHHHHHhhhh---HHHHHHhhhcc---ceEEEeeecc
Q 024795 83 ELTATELESLRSELADLEDREAHLKAQLEH---VDEILRSARLS---GYLYIRTRWK 133 (262)
Q Consensus 83 elt~~EvesLR~Ela~~eErEa~lkAqLe~---iDEvLRsarls---gYLyiRtRW~ 133 (262)
+++-+|||.+|.|-+....|+...+++.+. ..+||..--|- +=.-++.||.
T Consensus 149 ~~Ll~ELekIKkER~ee~~~~e~~~~~~~~~~~~~~~~~~NpLl~~~~~~~~kr~W~ 205 (244)
T PF04889_consen 149 AALLRELEKIKKERAEEKARKEEEKAEEEEKEREENILSGNPLLNASGDFKVKRRWD 205 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCCCccccCCc
Confidence 677799999999998888887777555443 34444443331 1224566664
No 136
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=22.36 E-value=1.3e+02 Score=24.52 Aligned_cols=23 Identities=9% Similarity=0.442 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhc
Q 024795 100 EDREAHLKAQLEHVDEILRSARL 122 (262)
Q Consensus 100 eErEa~lkAqLe~iDEvLRsarl 122 (262)
.++.+++.+++..+.+.|..|+.
T Consensus 53 ~~~~~~~~~ri~~l~~~L~~a~i 75 (157)
T PRK00226 53 KEEQGFIEGRIRELEDKLSNAEV 75 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHhCee
Confidence 44556778888889999988874
No 137
>PRK14144 heat shock protein GrpE; Provisional
Probab=22.28 E-value=78 Score=28.21 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=25.8
Q ss_pred CccccceeHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 024795 78 GQEKVELTATELESLRSELADLEDREAHLKAQLEHVD 114 (262)
Q Consensus 78 ~~ekvelt~~EvesLR~Ela~~eErEa~lkAqLe~iD 114 (262)
+++.++-..++++.|..|++++.+|-..+.|.++|+-
T Consensus 43 ~~~~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~R 79 (199)
T PRK14144 43 GHPSYTALEEQLTLAEQKAHENWEKSVRALAELENVR 79 (199)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566778888888888777777777777754
No 138
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=22.23 E-value=2e+02 Score=28.39 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=48.2
Q ss_pred HHHhhhcccCCCccccCCCCccccceeHHHHHHHHhhhcChHHHHHHHHHhhh--------------hHHHHHHhhhccc
Q 024795 59 AVMLNMFSLRGLPWVSSSDGQEKVELTATELESLRSELADLEDREAHLKAQLE--------------HVDEILRSARLSG 124 (262)
Q Consensus 59 as~l~lfs~~~~~W~s~~~~~ekvelt~~EvesLR~Ela~~eErEa~lkAqLe--------------~iDEvLRsarlsg 124 (262)
...++-+...++..-.....++.++-..+|++.+++|+++++++-+.++.+.+ ..=+++....-++
T Consensus 194 ~~~l~~~~f~~~~~p~~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~ 273 (646)
T PRK05771 194 EEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTD 273 (646)
T ss_pred HHHHHHCCCEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 34454455555555444456777888888888888888887766555444221 1223455566788
Q ss_pred eEEEeeeccc
Q 024795 125 YLYIRTRWKP 134 (262)
Q Consensus 125 YLyiRtRW~~ 134 (262)
+.++=+-|..
T Consensus 274 ~~~~l~GWvP 283 (646)
T PRK05771 274 KTFAIEGWVP 283 (646)
T ss_pred cEEEEEEEee
Confidence 8888888874
No 139
>PRK00846 hypothetical protein; Provisional
Probab=22.08 E-value=1.8e+02 Score=22.60 Aligned_cols=38 Identities=26% Similarity=0.187 Sum_probs=26.7
Q ss_pred HHHHHHHhhhcChHHHHHHHHHhhhhHHHHHHhhhccc
Q 024795 87 TELESLRSELADLEDREAHLKAQLEHVDEILRSARLSG 124 (262)
Q Consensus 87 ~EvesLR~Ela~~eErEa~lkAqLe~iDEvLRsarlsg 124 (262)
.=+|.|-..++....--..|+.||..+-+=|+.++-|+
T Consensus 27 ~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 27 QALTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34566666666666666778888888888888877554
No 140
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.94 E-value=1.3e+02 Score=23.84 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=22.4
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHH
Q 024795 86 ATELESLRSELADLEDREAHLKAQLEHVDEILR 118 (262)
Q Consensus 86 ~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLR 118 (262)
.+.++.|..+|..+|++...++..++.|.+.+.
T Consensus 144 ~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~ 176 (218)
T cd07596 144 PAKVEELEEELEEAESALEEARKRYEEISERLK 176 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777776665443
No 141
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=21.89 E-value=63 Score=30.27 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=9.9
Q ss_pred hcChHHHHHHHHHhhhhH
Q 024795 96 LADLEDREAHLKAQLEHV 113 (262)
Q Consensus 96 la~~eErEa~lkAqLe~i 113 (262)
|.-+.+-.++||||||-|
T Consensus 237 i~fLk~tN~qLKaQLegI 254 (259)
T KOG4001|consen 237 IEFLKETNRQLKAQLEGI 254 (259)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 333333445677777754
No 142
>PF15456 Uds1: Up-regulated During Septation
Probab=21.75 E-value=1.2e+02 Score=25.04 Aligned_cols=67 Identities=30% Similarity=0.381 Sum_probs=42.7
Q ss_pred hhhhhhHHHhhhc-ccCC----CccccCCCCccccceeHHHHHHHHhhhcChHHHHHHHHHh-hhhHHHHHHh
Q 024795 53 RKLKSAAVMLNMF-SLRG----LPWVSSSDGQEKVELTATELESLRSELADLEDREAHLKAQ-LEHVDEILRS 119 (262)
Q Consensus 53 r~~k~aas~l~lf-s~~~----~~W~s~~~~~ekvelt~~EvesLR~Ela~~eErEa~lkAq-Le~iDEvLRs 119 (262)
.|++.||..+.-+ +-++ .........++-...+.+-+|.+-.||..+|.|-+.+..+ |||+--||..
T Consensus 49 ~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~rLLeH~AavL~l 121 (124)
T PF15456_consen 49 SKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLENRLAEVRQRLLEHTAAVLQL 121 (124)
T ss_pred HHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566555443 2222 2233333334444455566888999999999999998876 6998888753
No 143
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.67 E-value=1.1e+02 Score=28.53 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=24.3
Q ss_pred HHHhhhcChHHHHHHHHHhhhhHHHHHHhhh
Q 024795 91 SLRSELADLEDREAHLKAQLEHVDEILRSAR 121 (262)
Q Consensus 91 sLR~Ela~~eErEa~lkAqLe~iDEvLRsar 121 (262)
-|+.|+.+++++.++|+++.+..+.-+.+.+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888888888887777777766
No 144
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=21.57 E-value=84 Score=26.43 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=43.3
Q ss_pred ceeEeeecceeEeEeeeCCCCCCCcceeehh----hhccCCCCcccCCCceeEEEEEeeecce-------eeeeccccee
Q 024795 152 PRFIVLHGSCIFFYLLSTDLSPQDSTVLSDV----VEVASLPSITRENGEMQYCFYILTRHGL-------RIECSSISKI 220 (262)
Q Consensus 152 pRFVVl~G~cif~yL~stdlsPQdStllsDI----VEVg~lP~f~rEdge~~yaFyIlTrhGL-------R~ECSS~ski 220 (262)
.||+||.-.|++||=-.+|=.|-.-+-|.++ ||-| .|+ -+++|=+..-.+- .+|-|..+.-
T Consensus 21 ~~WFVLt~~~L~wykd~eeKE~kyilpLdnLk~Rdve~g-f~s-------k~~~FeLfnpd~rnvykd~k~lel~~~~~e 92 (110)
T cd01256 21 DYWFVLTSESLSWYKDDEEKEKKYMLPLDGLKLRDIEGG-FMS-------RNHKFALFYPDGRNVYKDYKQLELGCETLE 92 (110)
T ss_pred ceEEEEecceeeeecccccccccceeeccccEEEeeccc-ccC-------CCcEEEEEcCcccccccchheeeecCCCHH
Confidence 3789999999999999999888776666543 3433 121 2355555432221 2344444556
Q ss_pred ehhhHHHH
Q 024795 221 QVYSWLSA 228 (262)
Q Consensus 221 QVDsWL~a 228 (262)
-||||-..
T Consensus 93 ~vdswkas 100 (110)
T cd01256 93 EVDSWKAS 100 (110)
T ss_pred HHHHHHHH
Confidence 79999643
No 145
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=21.54 E-value=68 Score=22.55 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=9.3
Q ss_pred HHHHHHHHhhhcChHHHHHHHHH
Q 024795 86 ATELESLRSELADLEDREAHLKA 108 (262)
Q Consensus 86 ~~EvesLR~Ela~~eErEa~lkA 108 (262)
..|.+.|+.++..+...-..|++
T Consensus 39 ~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 39 ESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444443333333
No 146
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.26 E-value=96 Score=25.34 Aligned_cols=27 Identities=37% Similarity=0.574 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhh
Q 024795 86 ATELESLRSELADLEDREAHLKAQLEH 112 (262)
Q Consensus 86 ~~EvesLR~Ela~~eErEa~lkAqLe~ 112 (262)
..|+..|+.|++.++.....|.++|..
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~ 104 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELAS 104 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555443
No 147
>KOG1821 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.14 E-value=60 Score=33.21 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=25.1
Q ss_pred cceeHHHHHHHHhhhcChHHHHHHHHHhhh
Q 024795 82 VELTATELESLRSELADLEDREAHLKAQLE 111 (262)
Q Consensus 82 velt~~EvesLR~Ela~~eErEa~lkAqLe 111 (262)
+.-...|+|+|+|+|......|.+++-||.
T Consensus 628 ikemekdlEsL~SaiSa~qdkeedfelqlS 657 (662)
T KOG1821|consen 628 IKEMEKDLESLMSAISAMQDKEEDFELQLS 657 (662)
T ss_pred HHHhhHHHHHHHHHHHhhhhhHHHHhhhhh
Confidence 333456899999999999999999999874
No 148
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.12 E-value=66 Score=29.54 Aligned_cols=48 Identities=29% Similarity=0.340 Sum_probs=36.9
Q ss_pred eHHHHHHHHhhhcChHHHHHHHHHhhhh-------HHHHHHhhhccceEEEeeec
Q 024795 85 TATELESLRSELADLEDREAHLKAQLEH-------VDEILRSARLSGYLYIRTRW 132 (262)
Q Consensus 85 t~~EvesLR~Ela~~eErEa~lkAqLe~-------iDEvLRsarlsgYLyiRtRW 132 (262)
-++-+|.||.+++.+|||-..|..||-+ +-+|=+.+-=||--+-+-+|
T Consensus 71 ~aanL~~lr~Ql~emee~~~~llrQLPs~tEmp~Ll~dv~q~Gl~sgL~fd~~~p 125 (211)
T COG3167 71 QAANLEALRAQLAEMEERFDILLRQLPSDTEMPNLLADVNQAGLSSGLTFDLFMP 125 (211)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHhhhccCceeeccCC
Confidence 4678899999999999999999999964 33444555557777776665
No 149
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=21.09 E-value=2e+02 Score=26.09 Aligned_cols=65 Identities=22% Similarity=0.239 Sum_probs=37.0
Q ss_pred eHHHHHHHHhhhcChHHHHHH----HHHhhhhHHHHHHhhhc-cceEEEeeecccCCCCCCCCCCCCcccccceeEeeec
Q 024795 85 TATELESLRSELADLEDREAH----LKAQLEHVDEILRSARL-SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHG 159 (262)
Q Consensus 85 t~~EvesLR~Ela~~eErEa~----lkAqLe~iDEvLRsarl-sgYLyiRtRW~~LpgEpppiDDtdVDDWlpRFVVl~G 159 (262)
..+|-+.||.|++.+.++... ++++.+.+-++|....- ..|. +-.+ +--.+-+.|.-.|++=.|
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~~~~~~~-i~A~----------Vi~r~~~~~~~~i~IdkG 139 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPLSSDEYK-ISAE----------VIYLNYDNYSTQVVINKG 139 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCc-eEEE----------EEEeCCCccccEEEEcCc
Confidence 456777888887766333322 66666777777766542 2222 3222 222345678877776666
Q ss_pred c
Q 024795 160 S 160 (262)
Q Consensus 160 ~ 160 (262)
+
T Consensus 140 s 140 (283)
T TIGR00219 140 F 140 (283)
T ss_pred c
Confidence 4
No 150
>COG1342 Predicted DNA-binding proteins [General function prediction only]
Probab=21.02 E-value=79 Score=26.15 Aligned_cols=51 Identities=35% Similarity=0.380 Sum_probs=30.8
Q ss_pred ccccCCCCccccceeHHHHHHHHh-hhcChHHHHHHHHHhhh--hHHHHHHhhh
Q 024795 71 PWVSSSDGQEKVELTATELESLRS-ELADLEDREAHLKAQLE--HVDEILRSAR 121 (262)
Q Consensus 71 ~W~s~~~~~ekvelt~~EvesLR~-Ela~~eErEa~lkAqLe--~iDEvLRsar 121 (262)
|-+.+....+.|+||.+|+|.||- .+.++..-||-++-+.- -+=..|.+||
T Consensus 21 P~g~~~~~~~~V~lt~eElEAlRLvD~~~l~QeeAA~rMgISr~Tfwr~l~sAR 74 (99)
T COG1342 21 PEGVPLEELEPVILTIEELEALRLVDYEGLTQEEAALRMGISRQTFWRLLTSAR 74 (99)
T ss_pred cCCCCcccCcceeecHHHHHHHHHHhHhhccHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555668999999999999993 33444445554443321 2344555554
No 151
>PRK14127 cell division protein GpsB; Provisional
Probab=20.86 E-value=1.1e+02 Score=25.09 Aligned_cols=41 Identities=29% Similarity=0.338 Sum_probs=0.0
Q ss_pred cceeHHHHHHHHhhhcChHHHHHHHHHhhh------------------hHHHHHHhhhc
Q 024795 82 VELTATELESLRSELADLEDREAHLKAQLE------------------HVDEILRSARL 122 (262)
Q Consensus 82 velt~~EvesLR~Ela~~eErEa~lkAqLe------------------~iDEvLRsarl 122 (262)
+|-..+|+..|+.|++.++++-+.+++|+. |+|=+=|-++|
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~L 97 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNL 97 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHH
No 152
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=20.81 E-value=96 Score=29.61 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=26.7
Q ss_pred eHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 024795 85 TATELESLRSELADLEDREAHLKAQLEHVD 114 (262)
Q Consensus 85 t~~EvesLR~Ela~~eErEa~lkAqLe~iD 114 (262)
|+.||+.+-..|.++|.|-..||.+|+..+
T Consensus 287 TRsElDe~~krL~ELrR~vr~L~k~l~~l~ 316 (320)
T TIGR01834 287 TRSELDEAHQRIQQLRREVKSLKKRLGDLE 316 (320)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788999999999999999999999988765
No 153
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=20.81 E-value=91 Score=23.93 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=18.7
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHH
Q 024795 86 ATELESLRSELADLEDREAHLKAQLEHVDEILR 118 (262)
Q Consensus 86 ~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLR 118 (262)
...++.||.||+....=....++.|..+++-++
T Consensus 3 ~~~L~~L~~eL~~~~~ld~~~~~~L~~l~~dIe 35 (85)
T PF14357_consen 3 QELLEKLHQELEQNPPLDEETRAELSSLDDDIE 35 (85)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 467888999988644333333444444444443
No 154
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=20.70 E-value=1.2e+02 Score=26.11 Aligned_cols=39 Identities=26% Similarity=0.452 Sum_probs=31.3
Q ss_pred ceeHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHHhhh
Q 024795 83 ELTATELESLRSELADLEDREAHLKAQLEHVDEILRSAR 121 (262)
Q Consensus 83 elt~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLRsar 121 (262)
|-++.|.+.|+.||..+...-++.-++.+.+...-|.||
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR 61 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQAR 61 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446789999999999888888888777777777777776
No 155
>PRK01402 hslO Hsp33-like chaperonin; Reviewed
Probab=20.46 E-value=23 Score=33.13 Aligned_cols=49 Identities=14% Similarity=0.394 Sum_probs=34.8
Q ss_pred EEEeeecceeeeecccceeehhhHHHHhhccccccCCCCCCCCCccccceeee
Q 024795 202 FYILTRHGLRIECSSISKIQVYSWLSALQTDCKLDYEPSTPNGSSENNCQICT 254 (262)
Q Consensus 202 FyIlTrhGLR~ECSS~skiQVDsWL~al~~d~k~~~~~~~~ngs~~~~~~~~~ 254 (262)
+-|+..+-++|.|+-+ +-.|..=|..|..+=-.+- - .+|.+|+.|+.|.
T Consensus 267 ~~il~~~~v~f~C~CS-rerv~~~L~~Lg~~El~~m--i-e~g~iev~CeFC~ 315 (328)
T PRK01402 267 VRVFDPQPVIARCSCS-REKIAGVLKGFSAEERADM--V-EDGKISVTCEFCS 315 (328)
T ss_pred ceeccCcccceeCCCC-HHHHHHHHHhcCHHHHHHH--H-hCCCEEEEeeCCC
Confidence 4588899999999865 4456666666654322222 2 6799999999996
No 156
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=20.42 E-value=18 Score=30.30 Aligned_cols=66 Identities=18% Similarity=0.318 Sum_probs=35.0
Q ss_pred ccchhhhhhhhhHHHhhhcccCCCcccc-----CCCCccccceeHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHHhh
Q 024795 47 SHSWTRRKLKSAAVMLNMFSLRGLPWVS-----SSDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRSA 120 (262)
Q Consensus 47 ~~swt~r~~k~aas~l~lfs~~~~~W~s-----~~~~~ekvelt~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLRsa 120 (262)
-|.|+..-+.....+..+ .--|++... ....++ -.+-|+..++.++++-+.|+++...+..+|...
T Consensus 37 yR~Y~~~dl~rL~~I~~l-r~~G~sL~eI~~ll~~~~~~-------~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll~~~ 107 (172)
T cd04790 37 YRLYGERDLERLEQICAY-RSAGVSLEDIRSLLQQPGDD-------ATDVLRRRLAELNREIQRLRQQQRAIATLLKQP 107 (172)
T ss_pred CccCCHHHHHHHHHHHHH-HHcCCCHHHHHHHHhcCChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577787777766544443 323444321 111111 123455666666666666666666666666543
No 157
>PRK14159 heat shock protein GrpE; Provisional
Probab=20.30 E-value=1.1e+02 Score=26.70 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=26.2
Q ss_pred ceeHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 024795 83 ELTATELESLRSELADLEDREAHLKAQLEHVD 114 (262)
Q Consensus 83 elt~~EvesLR~Ela~~eErEa~lkAqLe~iD 114 (262)
++-..+++.|+.|++++.++-..++|..+|+-
T Consensus 26 ~~~~~~i~~l~~e~~elkd~~lR~~AdfeN~r 57 (176)
T PRK14159 26 NIEDVEQNKLQKDYDELKDKYMRANAEFENIK 57 (176)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888999999999888888888888864
No 158
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=20.04 E-value=95 Score=30.18 Aligned_cols=46 Identities=30% Similarity=0.414 Sum_probs=35.0
Q ss_pred CCCCccccceeHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHHhhh
Q 024795 75 SSDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRSAR 121 (262)
Q Consensus 75 ~~~~~ekvelt~~EvesLR~Ela~~eErEa~lkAqLe~iDEvLRsar 121 (262)
+++.+.++.-+.+|++.|+.||+..+.--.-| .+|..||+.|+.++
T Consensus 71 ~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L-~~L~~i~~~l~~~~ 116 (593)
T PF06248_consen 71 ENEIQPQLRDAAEELQELKRELEENEQLLEVL-EQLQEIDELLEEVE 116 (593)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 45678888889999999999988776654444 37788888887666
No 159
>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated
Probab=20.01 E-value=1.9e+02 Score=30.62 Aligned_cols=57 Identities=25% Similarity=0.288 Sum_probs=37.1
Q ss_pred ccCCCccccCCCCccccceeH-------HHHHHHHh--------hhcCh---------------HHHHHHHHHhhhhHHH
Q 024795 66 SLRGLPWVSSSDGQEKVELTA-------TELESLRS--------ELADL---------------EDREAHLKAQLEHVDE 115 (262)
Q Consensus 66 s~~~~~W~s~~~~~ekvelt~-------~EvesLR~--------Ela~~---------------eErEa~lkAqLe~iDE 115 (262)
..|.+-=+.+..++++.-+|. +|++.|+. +|++| .||.+.+.+++..+.+
T Consensus 551 v~P~l~~~~~~~~~~~~~vT~eG~~kLkeEL~~L~~v~rpei~k~I~eAR~~GDLsENaEY~aAKe~q~~le~RI~~Le~ 630 (718)
T PRK06330 551 VQPSLKKGTSEVEEEILWTTSESFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFALEKRARLQEEIRVLSE 630 (718)
T ss_pred hCcchhcCcccCCCCCceeCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHCCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 456664444455566666765 56666665 34333 1556677888888999
Q ss_pred HHHhhhc
Q 024795 116 ILRSARL 122 (262)
Q Consensus 116 vLRsarl 122 (262)
.|+.|++
T Consensus 631 ~L~rA~V 637 (718)
T PRK06330 631 EINRARI 637 (718)
T ss_pred HHccCEE
Confidence 9999986
Done!