BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024796
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 280 bits (717), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 133/232 (57%), Positives = 170/232 (73%)
Query: 10 QRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKV 69
QRG+G+STPHA L NTTWDL+ DIE+LR HL + WQVFGGSWGSTLALAY+ HP +V
Sbjct: 68 QRGSGRSTPHADLVDNTTWDLVADIERLRTHLGVDRWQVFGGSWGSTLALAYAQTHPQQV 127
Query: 70 TGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSKRLNSDDK 129
T LVLRGIFLLR+ E++WFY+ GA+ ++PDAWE + + IP ER+ + A+ +RL SDD+
Sbjct: 128 TELVLRGIFLLRRFELEWFYQEGASRLFPDAWEHYLNAIPPVERADLMSAFHRRLTSDDE 187
Query: 130 ETQYAAARAWTKWEMMTAHLLPNEENIKRGEDDIFSLAFARIENHYFLNKGFFPSDSFLL 189
T+ AAA+AW+ WE T+ L +E+ + ED F+LAFARIENHYF+N GFF + LL
Sbjct: 188 ATRLAAAKAWSVWEGATSFLHVDEDFVTGHEDAHFALAFARIENHYFVNGGFFEVEDQLL 247
Query: 190 DNIDNIRHINATIVQGRYDVCCPMMSAWDLHKAWPEADFKVVADAGHSANEP 241
+ I I IV GRYDV CP+ SAWDLHKAWP+A ++ +GHSA EP
Sbjct: 248 RDAHRIADIPGVIVHGRYDVVCPLQSAWDLHKAWPKAQLQISPASGHSAFEP 299
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 272 bits (695), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 128/245 (52%), Positives = 170/245 (69%), Gaps = 1/245 (0%)
Query: 10 QRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKV 69
QRG G+S PHA LD NTTW L+ DIE+LR+ + +W VFGGSWGSTLALAY+ HP++V
Sbjct: 71 QRGCGRSRPHASLDNNTTWHLVADIERLREMAGVEQWLVFGGSWGSTLALAYAQTHPERV 130
Query: 70 TGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSKRLNSDDK 129
+ +VLRGIF LRK+ + W+Y+ GA+ +P+ WE ++ ++ER + AY +RL S D
Sbjct: 131 SEMVLRGIFTLRKQRLHWYYQDGASRFFPEKWERVLSILSDDERKDVIAAYRQRLTSADP 190
Query: 130 ETQYAAARAWTKWEMMTAHLLPNEENIKRGEDDIFSLAFARIENHYFLNKGFFPSDSFLL 189
+ Q AA+ W+ WE T LLP+ E+ GEDD F+LAFARIENHYF + GF SD LL
Sbjct: 191 QVQLEAAKLWSVWEGETVTLLPSRESASFGEDD-FALAFARIENHYFTHLGFLESDDQLL 249
Query: 190 DNIDNIRHINATIVQGRYDVCCPMMSAWDLHKAWPEADFKVVADAGHSANEPGIAAELVA 249
N+ IRHI A IV GRYD+ C + +AWDL KAWPEA+ +V AGHS +EPGI +L+
Sbjct: 250 RNVPLIRHIPAVIVHGRYDMACQVQNAWDLAKAWPEAELHIVEGAGHSYDEPGILHQLMI 309
Query: 250 TNEKL 254
++
Sbjct: 310 ATDRF 314
>pdb|3OOS|A Chain A, The Structure Of An AlphaBETA FOLD FAMILY HYDROLASE FROM
BACILLUS Anthracis Str. Sterne
Length = 278
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 96/234 (41%), Gaps = 31/234 (13%)
Query: 8 LHQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPD 67
++ +G G S + + + I D+E +R+ L I +W G S G LAL Y+ +
Sbjct: 55 VNLKGCGNSDSAKNDSEYSXTETIKDLEAIREALYINKWGFAGHSAGGXLALVYATEAQE 114
Query: 68 KVTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLI--PENERSCFVDAYSKRLN 125
+T +++ GGAAA + S +D I +N + + + LN
Sbjct: 115 SLTKIIV----------------GGAAA--SKEYASHKDSIYCSKNVKFNRIVSIXNALN 156
Query: 126 SDD--KETQYAAARAWTKWEMMTAHLLPNEENIKRGEDDIFSLAFARIENHYFLNKGFFP 183
D +E + A +R W + L EE +K R+ +YF +
Sbjct: 157 DDSTVQEERKALSREWALXSFYSEEKL--EEALKLPNSG--KTVGNRL--NYFRQVEY-- 208
Query: 184 SDSFLLDNIDNIRHINATIVQGRYDVCCPMMSAWDLHKAWPEADFKVVADAGHS 237
D + + ++ I + I G++DV CP + + ++ P A ++ H+
Sbjct: 209 KDYDVRQKLKFVK-IPSFIYCGKHDVQCPYIFSCEIANLIPNATLTKFEESNHN 261
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 7 ALHQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHP 66
A+ QRG G+S+ + +L+ D+ + + V G WG+ +A ++ HP
Sbjct: 65 AIDQRGYGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHP 124
Query: 67 DKVTGLV 73
D+ G+V
Sbjct: 125 DRCAGVV 131
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 7 ALHQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHP 66
A+ QRG G+S+ + +L+ D+ + + V G WG+ +A ++ HP
Sbjct: 59 AIDQRGYGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHP 118
Query: 67 DKVTGLV 73
D+ G+V
Sbjct: 119 DRCAGVV 125
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 79/208 (37%), Gaps = 39/208 (18%)
Query: 31 IDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWFYE 90
+D I + LEI + + G S+G LA+A +L + ++V +VL G R +
Sbjct: 82 VDHIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAVGTRFDVTE---- 137
Query: 91 GGAAAI--YPDAWESFRDLIPENERSCFVDAYSKRLNSDDKETQYAAARAWTKWEMMTAH 148
G A+ Y + E+ R+L+ + AY + L +D+ AR
Sbjct: 138 -GLNAVWGYTPSIENMRNLLD-------IFAYDRSLVTDE------LAR----------- 172
Query: 149 LLPNEENIKRGEDDIFSLAFARIENHYFLNKGFFPSDSFLLDNIDNIRHINATIVQGRYD 208
L E +I+ G + FS F + D L N I+ GR D
Sbjct: 173 -LRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPN-------ETLIIHGRED 224
Query: 209 VCCPMMSAWDLHKAWPEADFKVVADAGH 236
P+ S+ L + A V GH
Sbjct: 225 QVVPLSSSLRLGELIDRAQLHVFGRCGH 252
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 79/208 (37%), Gaps = 39/208 (18%)
Query: 31 IDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWFYE 90
+D I + LEI + + G ++G LA+A +L + ++V +VL G R +
Sbjct: 82 VDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTE---- 137
Query: 91 GGAAAI--YPDAWESFRDLIPENERSCFVDAYSKRLNSDDKETQYAAARAWTKWEMMTAH 148
G A+ Y + E+ R+L+ + AY + L +D+ AR
Sbjct: 138 -GLNAVWGYTPSIENMRNLLD-------IFAYDRSLVTDE------LAR----------- 172
Query: 149 LLPNEENIKRGEDDIFSLAFARIENHYFLNKGFFPSDSFLLDNIDNIRHINATIVQGRYD 208
L E +I+ G + FS F + D L N I+ GR D
Sbjct: 173 -LRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPN-------ETLIIHGRED 224
Query: 209 VCCPMMSAWDLHKAWPEADFKVVADAGH 236
P+ S+ L + A V GH
Sbjct: 225 QVVPLSSSLRLGELIDRAQLHVFGRCGH 252
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 31 IDDIEKLRQHLEIPEWQVF--GGSWGSTLALAYSLAHPDKVTGLVLRG 76
+++ E LR L E +VF G S+G LALAY++ + D + GL++ G
Sbjct: 83 VEEAEALRSKLFGNE-KVFLMGSSYGGALALAYAVKYQDHLKGLIVSG 129
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 31 IDDIEKLRQHLEIPEWQVF--GGSWGSTLALAYSLAHPDKVTGLVLRG 76
+++ E LR L E +VF G S+G LALAY++ + D + GL++ G
Sbjct: 83 VEEAEALRSKLFGNE-KVFLMGSSYGGALALAYAVKYQDHLKGLIVSG 129
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 31 IDDIEKLRQHLEIPEWQVF--GGSWGSTLALAYSLAHPDKVTGLVLRG 76
+++ E LR L E +VF G S+G LALAY++ + D + GL++ G
Sbjct: 83 VEEAEALRSKLFGNE-KVFLMGSSYGGALALAYAVKYQDHLKGLIVSG 129
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 31 IDDIEKLRQHLEIPEWQVF--GGSWGSTLALAYSLAHPDKVTGLVLRG 76
+++ E LR L E +VF G S+G LALAY++ + D + GL++ G
Sbjct: 83 VEEAEALRSKLFGNE-KVFLMGSSYGGALALAYAVKYQDHLKGLIVSG 129
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 31 IDDIEKLRQHLEIPEWQVF--GGSWGSTLALAYSLAHPDKVTGLVLRG 76
+++ E LR L E +VF G S+G LALAY++ + D + GL++ G
Sbjct: 83 VEEAEALRSKLFGNE-KVFLMGSSYGGALALAYAVKYQDHLKGLIVSG 129
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 90/221 (40%), Gaps = 47/221 (21%)
Query: 31 IDDIEKLRQHLEIPEWQVF--GGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWF 88
+++ E LR L E +VF G S+G LALAY++ + D + GL++
Sbjct: 83 VEEAEALRSKLFGNE-KVFLXGSSYGGALALAYAVKYQDHLKGLIV-------------- 127
Query: 89 YEGGAAAIYPDAWESFR--DLIPENERSCFVDAYSKRLNSDDKETQYAAARAWTKWEMMT 146
GG +++ E R D +P R + Y + ++ E Q A + +
Sbjct: 128 -SGGLSSVPLTVKEXNRLIDELPAKYRDA-IKKYGSSGSYENPEYQEAVNYFYHQ----- 180
Query: 147 AHLLPNE----ENIKRGEDDIFSLAFARIENHYFLNKG---FFPSDSF----LLDNIDNI 195
HLL +E E +K SL +A N Y + G F + + + D I I
Sbjct: 181 -HLLRSEDWPPEVLK-------SLEYAERRNVYRIXNGPNEFTITGTIKDWDITDKISAI 232
Query: 196 RHINATIVQGRYDVCCPMMSAWDLHKAWPEADFKVVADAGH 236
+ I I G YD P + A +H+ ++ V D H
Sbjct: 233 K-IPTLITVGEYDEVTPNV-ARVIHEKIAGSELHVFRDCSH 271
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 7 ALHQRGAGKS-TPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAH 65
A +RG G+S P D +T DDI +L +HL++ E + G S G Y H
Sbjct: 51 AFDRRGFGRSDQPWTGNDYDT---FADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARH 107
Query: 66 PD-KVTGLVLRG 76
+V GLVL G
Sbjct: 108 GSARVAGLVLLG 119
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 7 ALHQRGAGKS-TPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAH 65
A +RG G+S P D +T DDI +L +HL++ E + G S G Y H
Sbjct: 51 AFDRRGFGRSDQPWTGNDYDT---FADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARH 107
Query: 66 PD-KVTGLVLRG 76
+V GLVL G
Sbjct: 108 GSARVAGLVLLG 119
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 7 ALHQRGAGKS-TPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAH 65
A +RG G+S P D +T DDI +L +HL++ E + G S G Y H
Sbjct: 51 AFDRRGFGRSDQPWTGNDYDT---FADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARH 107
Query: 66 PD-KVTGLVLRG 76
+V GLVL G
Sbjct: 108 GSARVAGLVLLG 119
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 7 ALHQRGAGKS-TPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAH 65
A +RG G+S P D +T DDI +L +HL++ E + G S G Y H
Sbjct: 51 AFDRRGFGRSDQPWTGNDYDT---FADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARH 107
Query: 66 PD-KVTGLVLRG 76
+V GLVL G
Sbjct: 108 GSARVAGLVLLG 119
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 7 ALHQRGAGKS-TPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAH 65
A +RG G+S P D +T DDI +L +HL++ E + G S G Y H
Sbjct: 51 AFDRRGFGRSDQPWTGNDYDT---FADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARH 107
Query: 66 PD-KVTGLVLRG 76
+V GLVL G
Sbjct: 108 GSARVAGLVLLG 119
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 31 IDDIEKLRQHLEIPEWQVF--GGSWGSTLALAYSLAHPDKVTGLVLRG 76
+++ E LR L E +VF G ++G LALAY++ + D + GL++ G
Sbjct: 83 VEEAEALRSKLFGNE-KVFLMGSAYGGALALAYAVKYQDHLKGLIVSG 129
>pdb|2XMR|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 19 HACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIF 78
+ LDQ L D I + Q+L G G+ + Y+L HPD V GLVL I
Sbjct: 81 YPSLDQ-----LADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINID 135
Query: 79 LLRKKEIDW 87
K +DW
Sbjct: 136 PNAKGWMDW 144
>pdb|2XMS|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 19 HACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIF 78
+ LDQ L D I + Q+L G G+ + Y+L HPD V GLVL I
Sbjct: 81 YPSLDQ-----LADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINID 135
Query: 79 LLRKKEIDW 87
K +DW
Sbjct: 136 PNAKGWMDW 144
>pdb|2XMQ|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 19 HACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIF 78
+ LDQ L D I + Q+L G G+ + Y+L HPD V GLVL I
Sbjct: 81 YPSLDQ-----LADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINID 135
Query: 79 LLRKKEIDW 87
K +DW
Sbjct: 136 PNAKGWMDW 144
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 34 IEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRG 76
++ L L+I + G S G AL ++L +PD++ L+L G
Sbjct: 94 VKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMG 136
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 34 IEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRG 76
++ L L+I + G S G AL ++L +PD++ L+L G
Sbjct: 94 VKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMG 136
>pdb|2QMQ|A Chain A, Crystal Structure Of A N-Myc Downstream Regulated 2
Protein (Ndrg2, Syld, Ndr2, Ai182517, Au040374) From Mus
Musculus At 1.70 A Resolution
Length = 286
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 19 HACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIF 78
+ LDQ L D I + Q+L G G+ + Y+L HPD V GLVL I
Sbjct: 91 YPSLDQ-----LADMIPCILQYLNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINID 145
Query: 79 LLRKKEIDW 87
K +DW
Sbjct: 146 PNAKGWMDW 154
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 10 QRGAGKST--PHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPD 67
Q G G ST P A D T +D+ + L I + V G SWG L ++ P
Sbjct: 90 QVGCGNSTHLPDAPADFWTPQLFVDEFHAVCTALGIERYHVLGQSWGGMLGAEIAVRQPS 149
Query: 68 KVTGLVL 74
+ L +
Sbjct: 150 GLVSLAI 156
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 12 GAGKSTPHACLDQNTTWDLIDDIEKLR---QHLEIPEWQVF-GGSWGSTLALAYSLAHPD 67
G GKS N ++ L+D + L + L +P+ +F G WG+ LA Y+ H D
Sbjct: 80 GMGKSGKSG----NGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQD 135
Query: 68 KVTGLV 73
++ +V
Sbjct: 136 RIKAIV 141
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 12 GAGKSTPHACLDQNTTWDLIDDIEKLR---QHLEIPEWQVF-GGSWGSTLALAYSLAHPD 67
G GKS N ++ L+D + L + L +P+ +F G WG+ LA Y+ H D
Sbjct: 80 GMGKSGKSG----NGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQD 135
Query: 68 KVTGLV 73
++ +V
Sbjct: 136 RIKAIV 141
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 12 GAGKSTPHACLDQNTTWDLIDDIEKLR---QHLEIPEWQVF-GGSWGSTLALAYSLAHPD 67
G GKS N ++ L+D + L + L +P+ +F G WG+ LA Y+ H D
Sbjct: 79 GMGKSGKSG----NGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQD 134
Query: 68 KVTGLV 73
++ +V
Sbjct: 135 RIKAIV 140
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 12 GAGKSTPHACLDQNTTWDLIDDIEKLR---QHLEIPEWQVF-GGSWGSTLALAYSLAHPD 67
G GKS N ++ L+D + L + L +P+ +F G WG+ LA Y+ H D
Sbjct: 79 GMGKSGKSG----NGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQD 134
Query: 68 KVTGLV 73
++ +V
Sbjct: 135 RIKAIV 140
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 34 IEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRG 76
++ L L+I + G + G AL ++L +PD++ L+L G
Sbjct: 94 VKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 136
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 34 IEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRG 76
++ L L+I + G + G AL ++L +PD++ L+L G
Sbjct: 94 VKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 136
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 34 IEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRG 76
++ L L+I + G + G AL ++L +PD++ L+L G
Sbjct: 94 VKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 136
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 34 IEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRG 76
++ L L+I + G + G AL ++L +PD++ L+L G
Sbjct: 91 VKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 133
>pdb|3OUI|A Chain A, Phd2-R717 With 40787422
Length = 213
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 71 GLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSKRLNSDDKE 130
G + I+ L K+ D GG I+P+ F D+ P+ +R F +S R N + +
Sbjct: 142 GRCVTCIYYL-NKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFF--WSDRRNPHEVQ 198
Query: 131 TQYAAARAWTKW 142
YA A T W
Sbjct: 199 PAYATRYAITVW 210
>pdb|2G19|A Chain A, Cellular Oxygen Sensing: Crystal Structure Of Hypoxia-
Inducible Factor Prolyl Hydroxylase (Phd2)
Length = 244
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 71 GLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSKRLNSDDKE 130
G + I+ L K+ D GG I+P+ F D+ P+ +R F +S R N + +
Sbjct: 142 GRCVTCIYYL-NKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFF--WSDRRNPHEVQ 198
Query: 131 TQYAAARAWTKW 142
YA A T W
Sbjct: 199 PAYATRYAITVW 210
>pdb|3HQR|A Chain A, Phd2:mn:nog:hif1-Alpha Substrate Complex
Length = 246
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 71 GLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSKRLNSDDKE 130
G + I+ L K+ D GG I+P+ F D+ P+ +R F +S R N + +
Sbjct: 141 GRCVTCIYYL-NKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFF--WSDRRNPHEVQ 197
Query: 131 TQYAAARAWTKW 142
YA A T W
Sbjct: 198 PAYATRYAITVW 209
>pdb|2Y33|A Chain A, S-Nitrosylated Phd2 (Gsno Soaked) In Complex With Zn(Ii)
And Un9
pdb|2Y34|A Chain A, S-Nitrosylated Phd2 (No Exposed) In Complex With Fe(Ii)
And Un9
Length = 252
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 71 GLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSKRLNSDDKE 130
G + I+ L K+ D GG I+P+ F D+ P+ +R F +S R N + +
Sbjct: 147 GRCVTCIYYL-NKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFF--WSDRRNPHEVQ 203
Query: 131 TQYAAARAWTKW 142
YA A T W
Sbjct: 204 PAYATRYAITVW 215
>pdb|2G1M|A Chain A, Cellular Oxygen Sensing: Crystal Structure Of Hypoxia-
Inducible Factor Prolyl Hydroxylase (Phd2)
pdb|3HQU|A Chain A, Phd2:fe:un9:partial Hif1-Alpha Substrate Complex
Length = 246
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 71 GLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSKRLNSDDKE 130
G + I+ L K+ D GG I+P+ F D+ P+ +R F +S R N + +
Sbjct: 141 GRCVTCIYYL-NKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFF--WSDRRNPHEVQ 197
Query: 131 TQYAAARAWTKW 142
YA A T W
Sbjct: 198 PAYATRYAITVW 209
>pdb|3OUH|A Chain A, Phd2-R127 With Jnj41536014
pdb|3OUJ|A Chain A, Phd2 With 2-Oxoglutarate
Length = 237
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 71 GLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSKRLNSDDKE 130
G + I+ L K+ D GG I+P+ F D+ P+ +R F +S R N + +
Sbjct: 142 GRCVTCIYYL-NKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFF--WSDRRNPHEVQ 198
Query: 131 TQYAAARAWTKW 142
YA A T W
Sbjct: 199 PAYATRYAITVW 210
>pdb|2HBT|A Chain A, Crystal Structure Of Hif Prolyl Hydroxylase Egln-1 In
Complex With A Biologically Active Inhibitor
pdb|2HBU|A Chain A, Crystal Structure Of Hif Prolyl Hydroxylase Egln-1 In
Complex With A Biologically Active Inhibitor
Length = 247
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 71 GLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSKRLNSDDKE 130
G + I+ L K+ D GG I+P+ F D+ P+ +R F +S R N + +
Sbjct: 142 GRCVTCIYYL-NKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFF--WSDRRNPHEVQ 198
Query: 131 TQYAAARAWTKW 142
YA A T W
Sbjct: 199 PAYATRYAITVW 210
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 57/114 (50%), Gaps = 15/114 (13%)
Query: 12 GAGKSTPHACLDQNTTWDL---IDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDK 68
G GKST +D + ++ + D + ++ Q L I + VFG S G + + +P+
Sbjct: 61 GHGKSTD--AIDPDRSYSMEGYADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPE- 117
Query: 69 VTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSK 122
+ GL++ G + ++E+ ++ G PD + +++ E + V++Y++
Sbjct: 118 MRGLMITGTPPVAREEVGQGFKSG-----PDMALAGQEIFSERD----VESYAR 162
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 7 ALHQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHP 66
A+ Q G KS+ A Q + L + L + L + V G S G LA Y+L +P
Sbjct: 78 AVDQVGFCKSSKPAHY-QYSFQQLAANTHALLERLGVARASVIGHSXGGXLATRYALLYP 136
Query: 67 DKVTGLVL 74
+V LVL
Sbjct: 137 RQVERLVL 144
>pdb|2B0C|A Chain A, The Crystal Structure Of The Putative Phosphatase From
Escherichia Coli
Length = 206
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 169 ARIENHYFLNKGFFPSDS-FLLDNIDNIRHIN 199
ARI H +GF PSD+ F DN DNI N
Sbjct: 151 ARIYQHVLQAEGFSPSDTVFFDDNADNIEGAN 182
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 57/114 (50%), Gaps = 15/114 (13%)
Query: 12 GAGKSTPHACLDQNTTWDL---IDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDK 68
G GKST +D + ++ + D + ++ Q L I + VFG S G + + +P+
Sbjct: 61 GHGKSTD--AIDPDRSYSMEGYADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPE- 117
Query: 69 VTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSK 122
+ GL++ G + ++E+ ++ G PD + +++ E + V++Y++
Sbjct: 118 MRGLMITGTPPVAREEVGQGFKSG-----PDMALAGQEIFSERD----VESYAR 162
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 34 IEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRG 76
++ + L+I + + G S G ++A++L P++V LVL G
Sbjct: 97 LKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMG 139
>pdb|3N74|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reduc Brucella Melitensis
pdb|3N74|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reduc Brucella Melitensis
pdb|3N74|C Chain C, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reduc Brucella Melitensis
pdb|3N74|D Chain D, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reduc Brucella Melitensis
Length = 261
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 67 DKVTGLVLRGIFLLRKKEIDWFYEGGA 93
D++ G+ +RG++L+ K I F E GA
Sbjct: 109 DRIVGVNVRGVYLMTSKLIPHFKENGA 135
>pdb|3I6E|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|C Chain C, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|D Chain D, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|E Chain E, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|F Chain F, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|G Chain G, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|H Chain H, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi
Length = 385
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 43 IPEWQVFGGSWGSTLALAYSLAHPD 67
+P W + GG T+ L+ S+A+PD
Sbjct: 124 LPVWALLGGKCRDTIPLSCSIANPD 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,738,945
Number of Sequences: 62578
Number of extensions: 377483
Number of successful extensions: 936
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 905
Number of HSP's gapped (non-prelim): 51
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)