BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024797
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI2|A Chain A, Structure And Mechanism Of Mrna Cap (guanine N-7)
Methyltransferase
pdb|1RI3|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI4|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI5|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1Z3C|A Chain A, Encephalitozooan Cuniculi Mrna Cap (Guanine-N7)
Methyltransferasein Complexed With Azoadomet
pdb|2HV9|A Chain A, Encephalitozoon Cuniculi Mrna Cap (Guanine-N7)
Methyltransferase In Complex With Sinefungin
Length = 298
Score = 143 bits (361), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 132/227 (58%), Gaps = 20/227 (8%)
Query: 30 FLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVL 89
F +D++ + ++ +HY+ + E R+ S I+++ NN+IK+ L++LY +RGD VL
Sbjct: 10 FRKDQAMEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVL 69
Query: 90 DLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149
DL CGKGGDL+K+++A IG Y G+DIAE SI D R R A + +RR K F A+
Sbjct: 70 DLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR----ARNMKRRFKVFFRAQ---- 121
Query: 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209
D Y H+D FD+ S QF+ HY++ST A N++ LRPGG FI T+P
Sbjct: 122 DSYGRHMDL----GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177
Query: 210 NVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHL 256
+VI+++ ++ + N Y I L E+ D +S R +Y+F L
Sbjct: 178 DVILERYKQGR---MSNDFYKIEL-EKMEDVPMESVR----EYRFTL 216
>pdb|3BGV|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3BGV|B Chain B, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3BGV|C Chain C, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3BGV|D Chain D, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3EPP|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
(Rnmt) In Complex With Sinefungin
pdb|3EPP|B Chain B, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
(Rnmt) In Complex With Sinefungin
Length = 313
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 112/207 (54%), Gaps = 20/207 (9%)
Query: 61 SPIIHLKKLNNWIKSVLVQLY-------ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI 113
S I +L+ NNW+KSVL+ + +R VLDL CGKGGDL+KW K +I V
Sbjct: 4 SRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCT 63
Query: 114 DIAEGSIEDCRTRYNGDADHHQRR-KKFSFPARLICGDCY-EVHLDKVLADDAPFDICSC 171
DIA+ S++ C+ RY D RR ++ F A I D E+ +DK FDICSC
Sbjct: 64 DIADVSVKQCQQRYE---DMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSC 120
Query: 172 QFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWI 231
QF HYS+ + +A L N L PGG FIGT P++ +I++L E + GN +Y +
Sbjct: 121 QFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTV 180
Query: 232 RLDEEFADKKFKSSRP-FGIQYKFHLE 257
+ + K P FG +Y F+LE
Sbjct: 181 KFQK-------KGDYPLFGCKYDFNLE 200
>pdb|2VDW|A Chain A, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
pdb|2VDW|C Chain C, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
pdb|2VDW|E Chain E, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
pdb|2VDW|G Chain G, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
Length = 302
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 10/154 (6%)
Query: 69 LNNWIKSVLVQLYARRGDV-------VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIE 121
L+N++K++L+ +Y + + VL + G G DL K+ +I V D +I
Sbjct: 26 LSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIA 85
Query: 122 DCRTRYNG-DADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
RYN ++ + KF + I D + + +V F+I QFA+HYS+
Sbjct: 86 RGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY-FGKFNIIDWQFAIHYSFH 144
Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIK 214
A + N+S L GG + T D + + K
Sbjct: 145 PRHYA-TVMNNLSELTASGGKVLITTMDGDKLSK 177
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 25/157 (15%)
Query: 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQ 135
L+ Y ++ VLDLACG GG + G+ VG+DI+E I R ++ +
Sbjct: 31 LLXKYXKKRGKVLDLACGVGG--FSFLLEDYGFEVVGVDISEDXIRKAR-------EYAK 81
Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFD-ICSCQFAMHYSWSTEARARRALANVSA 194
R+ I GD K+ +D FD + +H+ + V
Sbjct: 82 SRES---NVEFIVGDA-----RKLSFEDKTFDYVIFIDSIVHFE---PLELNQVFKEVRR 130
Query: 195 LLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWI 231
+L+P G FI D ++ +L+ E L +G YWI
Sbjct: 131 VLKPSGKFIXYFTDLRELLPRLK--ESLVVGQK-YWI 164
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 24/123 (19%)
Query: 88 VLDLACGKGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL 146
VLDLACG G + + A+ GY VG+D+ E + R + +R K F
Sbjct: 45 VLDLACGTG--IPTLELAERGYEVVGLDLHEEMLRVARRK------AKERNLKIEF---- 92
Query: 147 ICGDCYEVHLDKVLADDAPFDICSCQFA--MHYSWSTEARARRALANVSALLRPGGTFIG 204
+ GD E+ A FD + F+ M++ E R+ + V+ L+PGG FI
Sbjct: 93 LQGDVLEI------AFKNEFDAVTMFFSTIMYFD---EEDLRKLFSKVAEALKPGGVFIT 143
Query: 205 TMP 207
P
Sbjct: 144 DFP 146
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 17/125 (13%)
Query: 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQR 136
+ L R GD VLD+ CG G ++ A+ GI I+ + R A
Sbjct: 54 IALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARAT--AAGLAN 111
Query: 137 RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL 196
R FS+ D ++ +DA FD ++H+ RAL + +L
Sbjct: 112 RVTFSY------ADAXDLPF-----EDASFDAVWALESLHHXPDRG----RALREXARVL 156
Query: 197 RPGGT 201
RPGGT
Sbjct: 157 RPGGT 161
>pdb|1XVA|A Chain A, Methyltransferase
pdb|1XVA|B Chain B, Methyltransferase
pdb|1BHJ|A Chain A, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1BHJ|B Chain B, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1D2C|A Chain A, Methyltransferase
pdb|1D2C|B Chain B, Methyltransferase
pdb|1NBH|A Chain A, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|B Chain B, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|C Chain C, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|D Chain D, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1KIA|A Chain A, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|B Chain B, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|C Chain C, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|D Chain D, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|2IDJ|A Chain A, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|B Chain B, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|C Chain C, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|D Chain D, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDK|A Chain A, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|B Chain B, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|C Chain C, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|D Chain D, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
Length = 292
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
W+ +L Q R VLD+ACG G D I + G + D +Y
Sbjct: 47 WLLGLLRQHGCHR---VLDVACGTGVDSIMLVEE------GFSVTSVDASDKMLKY-ALK 96
Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSC---QFA-MHYSWSTEARARR 187
+ RRK+ +F + + + + LDK + FD C FA + S ++ R
Sbjct: 97 ERWNRRKEPAFD-KWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRL 155
Query: 188 ALANVSALLRPGGTFI 203
AL N+++++RPGG +
Sbjct: 156 ALKNIASMVRPGGLLV 171
>pdb|3THR|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THS|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
Length = 293
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
W+ +L Q R VLD+ACG G D I + G + D +Y
Sbjct: 48 WLLGLLRQHGCHR---VLDVACGTGVDSIMLVEE------GFSVTSVDASDKMLKY-ALK 97
Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSC---QFA-MHYSWSTEARARR 187
+ RRK+ +F + + + + LDK + FD C FA + S ++ R
Sbjct: 98 ERWNRRKEPAFD-KWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRL 156
Query: 188 ALANVSALLRPGGTFI 203
AL N+++++RPGG +
Sbjct: 157 ALKNIASMVRPGGLLV 172
>pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2G|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2H|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|C Chain C, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|D Chain D, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1NBI|A Chain A, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|B Chain B, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|C Chain C, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|D Chain D, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam
Length = 292
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
W+ +L Q R VLD+ACG G D I + G + D +Y
Sbjct: 47 WLLGLLRQHGCHR---VLDVACGTGVDSIMLVEE------GFSVTSVDASDKMLKY-ALK 96
Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSC---QFA-MHYSWSTEARARR 187
+ RRK+ +F + + + + LDK + FD C FA + S ++ R
Sbjct: 97 ERWNRRKEPAFD-KWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRL 155
Query: 188 ALANVSALLRPGGTFI 203
AL N+++++RPGG +
Sbjct: 156 ALKNIASMVRPGGLLV 171
>pdb|1R8X|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8X|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8Y|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|C Chain C, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|D Chain D, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|E Chain E, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|F Chain F, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|G Chain G, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|H Chain H, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
Length = 292
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 19/138 (13%)
Query: 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIE-DCRTRYNG 129
W+ +L Q R VLD+ACG G D I + G+ V +D ++ ++ + R+N
Sbjct: 47 WLLGLLRQHGCHR---VLDVACGTGVDSIML--VEEGFSVMSVDASDKMLKYALKERWN- 100
Query: 130 DADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSC---QFA-MHYSWSTEARA 185
RRK+ SF +I + + LDK + FD C FA + ++
Sbjct: 101 ------RRKEPSFDNWVI-EEANWLTLDKDVLSGDGFDAVICLGNSFAHLPDCKGDQSEH 153
Query: 186 RRALANVSALLRPGGTFI 203
R AL N+++++RPGG +
Sbjct: 154 RLALKNIASMVRPGGLLV 171
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 19/122 (15%)
Query: 84 RGDVVLDLACGKGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF 142
RG VLDL G G + A++G VG++ S+ + +A Q
Sbjct: 233 RGRQVLDLGAGYGA--LTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQ------- 283
Query: 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL-LRPGGT 201
+D+ L ++A FDI H + +A NV+A LRPGG
Sbjct: 284 --------ALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGV 335
Query: 202 FI 203
F
Sbjct: 336 FF 337
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 19/122 (15%)
Query: 84 RGDVVLDLACGKGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF 142
RG VLDL G G + A++G VG++ S+ + +A Q
Sbjct: 233 RGRQVLDLGAGYGA--LTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQ------- 283
Query: 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL-LRPGGT 201
+D+ L ++A FDI H + +A NV+A LRPGG
Sbjct: 284 --------ALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGV 335
Query: 202 FI 203
F
Sbjct: 336 FF 337
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
Query: 35 STKVFARKVADHYSRRTNQTLEERE-------ASPIIHLKKLNNWIKSVLVQLY------ 81
ST VAD+Y + + + + A P H K L + VL + Y
Sbjct: 17 STPSIRDHVADYYGKTLQSSADLKTSACKLAAAVPESHRKILADIADEVLEKFYGCGSTL 76
Query: 82 ----ARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCR 124
+ G VLDL CG G D+ K + G +G+D+ + +E R
Sbjct: 77 PADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVAR 125
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 12/129 (9%)
Query: 97 GDLIKWDKAKIG----YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152
GDL W+ A G YY EG R ++ D+ F F ++ + Y
Sbjct: 32 GDLYNWEVAIFGPPNTYY------EGGYFKARLKF--PIDYPYSPPAFRFLTKMWHPNIY 83
Query: 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212
E + P D W+ R L +V +LL TF DA+V+
Sbjct: 84 ETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVM 143
Query: 213 IKKLREVEG 221
+K +E +G
Sbjct: 144 YRKWKESKG 152
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 12/129 (9%)
Query: 97 GDLIKWDKAKIG----YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152
GDL W+ A G YY EG R ++ D+ F F ++ + Y
Sbjct: 35 GDLYNWEVAIFGPPNTYY------EGGYFKARLKF--PIDYPYSPPAFRFLTKMWHPNIY 86
Query: 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212
E + P D W+ R L +V +LL TF DA+V+
Sbjct: 87 ETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVM 146
Query: 213 IKKLREVEG 221
+K +E +G
Sbjct: 147 YRKWKESKG 155
>pdb|3PX3|A Chain A, Structure Of Tylm1 From Streptomyces Fradiae H123a Mutant
In Complex With Sah And Dtdp-Quip3n
pdb|3PX3|D Chain D, Structure Of Tylm1 From Streptomyces Fradiae H123a Mutant
In Complex With Sah And Dtdp-Quip3n
Length = 263
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Query: 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH 134
+ LV+ ++ + +LD+ACG G L + G G++++ + R R HH
Sbjct: 41 AALVRRHSPKAASLLDVACGTGMHL-RHLADSFGTVEGLELSADMLAIARRRNPDAVLHH 99
Query: 135 QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH 176
+ FS R C + LA A D +FA H
Sbjct: 100 GDMRDFSLGRRFSAVTCMFSSI-GALAGQAELDAALERFAAH 140
>pdb|3PX2|A Chain A, Structure Of Tylm1 From Streptomyces Fradiae H123n Mutant
In Complex With Sah And Dtdp-Quip3n
pdb|3PX2|D Chain D, Structure Of Tylm1 From Streptomyces Fradiae H123n Mutant
In Complex With Sah And Dtdp-Quip3n
Length = 262
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Query: 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH 134
+ LV+ ++ + +LD+ACG G L + G G++++ + R R HH
Sbjct: 41 AALVRRHSPKAASLLDVACGTGMHL-RHLADSFGTVEGLELSADMLAIARRRNPDAVLHH 99
Query: 135 QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH 176
+ FS R C + LA A D +FA H
Sbjct: 100 GDMRDFSLGRRFSAVTCMFSSIGN-LAGQAELDAALERFAAH 140
>pdb|3PFG|A Chain A, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sam And
Dtdp-Phenol
pdb|3PFH|A Chain A, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sah And
Dtdp-Quip3n
pdb|3PFH|D Chain D, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sah And
Dtdp-Quip3n
Length = 263
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Query: 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH 134
+ LV+ ++ + +LD+ACG G L + G G++++ + R R HH
Sbjct: 41 AALVRRHSPKAASLLDVACGTGMHL-RHLADSFGTVEGLELSADMLAIARRRNPDAVLHH 99
Query: 135 QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH 176
+ FS R C + LA A D +FA H
Sbjct: 100 GDMRDFSLGRRFSAVTCMFSSIGH-LAGQAELDAALERFAAH 140
>pdb|3EZ1|A Chain A, Crystal Structure Of Putative Aminotransferase (Mocr
Family) (Yp_604413.1) From Deinococcus Geothermalis Dsm
11300 At 2.60 A Resolution
pdb|3EZ1|B Chain B, Crystal Structure Of Putative Aminotransferase (Mocr
Family) (Yp_604413.1) From Deinococcus Geothermalis Dsm
11300 At 2.60 A Resolution
Length = 423
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE 117
R D VL G+GG+ W K GY++ +D AE
Sbjct: 320 RAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAE 354
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 58 REASPIIHLKKLNNWIKSVLV-QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIA 116
RE PI I++V + +L + DVV+D+ CG GG ++ K + + ID
Sbjct: 13 REGVPITK-----EEIRAVSIGKLNLNKDDVVVDVGCGSGGXTVEIAK-RCKFVYAIDYL 66
Query: 117 EGSIE 121
+G+IE
Sbjct: 67 DGAIE 71
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 13/125 (10%)
Query: 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQ 135
++ Y + D +LD+ CG G I + A GY V GIDI +I T + +
Sbjct: 23 IIHNYLQEDDEILDIGCGSGK--ISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQK 80
Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195
K F + D+ FD Q A S R + V +
Sbjct: 81 TGGKAEFKVENASSLSFH---------DSSFDFAVMQ-AFLTSVPDPKERSRIIKEVFRV 130
Query: 196 LRPGG 200
L+PG
Sbjct: 131 LKPGA 135
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 88 VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128
VLD+ CG+G + ++ K + +G+DI E I+ C ++N
Sbjct: 45 VLDIGCGRG-EFLELCKEEGIESIGVDINEDMIKFCEGKFN 84
>pdb|3PMQ|A Chain A, Crystal Structure Of The Outer Membrane Decaheme
Cytochrome Mtrf
Length = 669
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY-EVHLDKVLADDAPFDICSCQFAMHY 177
SI +C+T + + D R+ + P CG C+ +++ A D +C +
Sbjct: 245 SISNCQTCHADNPDLADRQNWYRVPTMEACGACHTQINFPAGQGHPAQTDNSNCVACHNA 304
Query: 178 SWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK 214
W+ A A SAL + + DAN I
Sbjct: 305 DWT--ANVHSNAAQTSALAQFNASISSASMDANGTIT 339
>pdb|2KMA|A Chain A, Nmr Structure Of The F0f1 Double Domain (Residues 1-202)
Of The Talin Ferm Domain
Length = 178
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 9 PSSSEGPPAQRFKQNPEGDSHFLEDESTK----VFARKVADHYSRRTNQTLEEREASPII 64
P + GPP N G FL D+ K + A K D+Y R T+E R+ +
Sbjct: 43 PEALAGPP------NDFG--LFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQRPL 94
Query: 65 HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGG 97
++ L+ +K+++V D+++ + C + G
Sbjct: 95 KIRMLDGTVKTIMVDDSKTVTDMLMTI-CARIG 126
>pdb|3IVF|A Chain A, Crystal Structure Of The Talin Head Ferm Domain
Length = 371
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 9 PSSSEGPPAQRFKQNPEGDSHFLEDESTK----VFARKVADHYSRRTNQTLEEREASPII 64
P + GPP N G FL D+ K + A K D+Y R T+E R+ +
Sbjct: 37 PEALAGPP------NDFG--LFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQRPL 88
Query: 65 HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGG 97
++ L+ +K+++V D+++ + C + G
Sbjct: 89 KIRMLDGTVKTIMVDDSKTVTDMLMTI-CARIG 120
>pdb|2ZYK|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYK|B Chain B, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYK|C Chain C, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYK|D Chain D, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYM|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Alpha-Cyclodextrin
pdb|2ZYN|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Beta-Cyclodextrin
pdb|2ZYO|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Maltotetraose
Length = 397
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 67 KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV 111
KK ++ V V L ++ + LD GKG DL+ W ++G V
Sbjct: 45 KKTGIQVEVVPVALLKQQEKLTLDGPAGKGADLVTWPHDRLGEAV 89
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDAD 132
++ DL CG GG + + G GID G IE R+N +A+
Sbjct: 55 LIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIE----RFNKNAE 96
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDAD 132
++ DL CG GG + + G GID G IE R+N +A+
Sbjct: 50 LIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIE----RFNKNAE 91
>pdb|1XI8|A Chain A, Molybdenum Cofactor Biosynthesis Protein From Pyrococcus
Furiosus Pfu-1657500-001
pdb|1XI8|B Chain B, Molybdenum Cofactor Biosynthesis Protein From Pyrococcus
Furiosus Pfu-1657500-001
Length = 403
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
A+L+ YEV + VL DD P + +F +A+ + + G I
Sbjct: 323 AKLVGAKDYEVKVRAVLEDDVPSQLGRYEFVRVMYRDGKAKVIK---------KKGSGII 373
Query: 204 GTMPDANVIIKKLREVEGLAIGNSVYWIRL 233
++ +N + +VEG G V W+ L
Sbjct: 374 SSLVQSNAYLVVPEDVEGYRRGEEV-WVTL 402
>pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
Length = 197
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 78 VQLYARRGDVVLDLACGKGGD 98
++++ + GD V+D CG G D
Sbjct: 16 IKMFVKEGDTVVDATCGNGND 36
>pdb|3IZB|D Chain D, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3U5C|E Chain E, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|E Chain E, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 261
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 87 VVLDLACGKGGDLIKWDKAKIGYYVG 112
V +DLA GK D IK+D K+ Y G
Sbjct: 160 VKIDLASGKITDFIKFDAGKLVYVTG 185
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
D FDI +C++A H+ + R+A+ V+ +L+ G F+
Sbjct: 85 DDSFDIITCRYAAHHF----SDVRKAVREVARVLKQDGRFL 121
>pdb|2GYA|K Chain K, Structure Of The 50s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYC|K Chain K, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
Length = 131
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 185 ARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRL 233
ARRA+ A+ R G +I PD + K L G GN YW+ L
Sbjct: 47 ARRAMTR--AVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVAL 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,587,813
Number of Sequences: 62578
Number of extensions: 353980
Number of successful extensions: 844
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 824
Number of HSP's gapped (non-prelim): 35
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)