Query 024797
Match_columns 262
No_of_seqs 233 out of 2732
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:29:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1975 mRNA cap methyltransfe 100.0 1.5E-34 3.2E-39 234.6 17.5 222 34-260 67-289 (389)
2 PF03291 Pox_MCEL: mRNA cappin 100.0 1E-29 2.2E-34 215.4 16.2 218 37-260 7-238 (331)
3 COG2226 UbiE Methylase involve 99.9 8.7E-25 1.9E-29 175.8 13.4 144 34-205 11-155 (238)
4 PF01209 Ubie_methyltran: ubiE 99.9 6.2E-24 1.3E-28 172.5 9.4 143 35-205 8-152 (233)
5 PLN02233 ubiquinone biosynthes 99.9 8.3E-21 1.8E-25 157.5 15.3 149 34-207 33-183 (261)
6 PLN02396 hexaprenyldihydroxybe 99.8 5.1E-20 1.1E-24 155.9 16.1 109 84-210 131-239 (322)
7 KOG1540 Ubiquinone biosynthesi 99.8 1.2E-19 2.6E-24 143.8 13.9 144 37-205 63-213 (296)
8 COG2227 UbiG 2-polyprenyl-3-me 99.8 3.2E-20 6.9E-25 147.0 8.8 152 34-211 14-166 (243)
9 PF08241 Methyltransf_11: Meth 99.8 1E-19 2.2E-24 127.5 10.1 95 89-204 1-95 (95)
10 TIGR02752 MenG_heptapren 2-hep 99.8 2.6E-19 5.7E-24 146.3 14.0 144 35-206 6-151 (231)
11 PLN02244 tocopherol O-methyltr 99.8 6.1E-19 1.3E-23 151.7 16.6 118 72-206 101-223 (340)
12 PF12847 Methyltransf_18: Meth 99.8 2.9E-19 6.3E-24 129.4 11.6 109 84-207 1-112 (112)
13 PRK05785 hypothetical protein; 99.8 5.5E-19 1.2E-23 143.4 13.2 129 35-199 10-140 (226)
14 PRK11036 putative S-adenosyl-L 99.8 5.9E-19 1.3E-23 146.3 13.1 149 38-211 4-154 (255)
15 PRK10258 biotin biosynthesis p 99.8 2.6E-18 5.7E-23 142.1 14.0 137 34-209 7-143 (251)
16 PRK15451 tRNA cmo(5)U34 methyl 99.8 6.6E-18 1.4E-22 139.2 13.8 142 39-206 20-164 (247)
17 PTZ00098 phosphoethanolamine N 99.8 9.5E-18 2.1E-22 139.3 14.1 117 73-207 41-157 (263)
18 PF13847 Methyltransf_31: Meth 99.8 7.1E-18 1.5E-22 129.0 12.2 109 83-208 2-112 (152)
19 PRK11207 tellurite resistance 99.8 1.6E-17 3.4E-22 132.3 12.9 105 82-204 28-132 (197)
20 TIGR00740 methyltransferase, p 99.7 6E-17 1.3E-21 133.0 14.9 109 82-207 51-162 (239)
21 PRK14103 trans-aconitate 2-met 99.7 1.5E-17 3.3E-22 137.8 11.1 108 75-208 20-128 (255)
22 PF13649 Methyltransf_25: Meth 99.7 1.4E-17 3E-22 118.4 8.3 96 88-200 1-101 (101)
23 PRK01683 trans-aconitate 2-met 99.7 3.4E-17 7.3E-22 136.1 12.0 111 74-208 21-132 (258)
24 PLN02490 MPBQ/MSBQ methyltrans 99.7 2.6E-17 5.6E-22 140.0 11.0 103 83-206 112-215 (340)
25 COG2230 Cfa Cyclopropane fatty 99.7 3.3E-17 7.2E-22 134.3 10.9 115 73-205 61-175 (283)
26 TIGR00477 tehB tellurite resis 99.7 9.2E-17 2E-21 127.7 12.8 106 81-205 27-132 (195)
27 PF02353 CMAS: Mycolic acid cy 99.7 7.8E-17 1.7E-21 133.9 11.2 116 73-206 51-166 (273)
28 KOG1270 Methyltransferases [Co 99.7 2.7E-17 5.8E-22 131.3 7.8 111 85-211 90-200 (282)
29 PRK15068 tRNA mo(5)U34 methylt 99.7 1.2E-16 2.7E-21 136.1 12.0 110 79-206 117-226 (322)
30 PLN02336 phosphoethanolamine N 99.7 1.5E-16 3.2E-21 143.3 13.0 113 76-207 258-370 (475)
31 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 5.3E-16 1.1E-20 125.9 15.0 140 37-206 2-143 (223)
32 TIGR00452 methyltransferase, p 99.7 1.2E-16 2.7E-21 134.8 11.5 113 76-206 113-225 (314)
33 TIGR02072 BioC biotin biosynth 99.7 2.1E-16 4.5E-21 129.6 12.5 105 83-209 33-138 (240)
34 TIGR03587 Pse_Me-ase pseudamin 99.7 3.5E-16 7.6E-21 124.9 13.4 100 83-206 42-142 (204)
35 PRK00216 ubiE ubiquinone/menaq 99.7 4.2E-16 9E-21 127.8 14.2 146 34-206 11-158 (239)
36 PF13489 Methyltransf_23: Meth 99.7 8.4E-17 1.8E-21 123.9 8.9 100 82-210 20-119 (161)
37 KOG4300 Predicted methyltransf 99.7 4.2E-16 9.1E-21 120.0 11.8 106 85-207 77-183 (252)
38 PF05401 NodS: Nodulation prot 99.7 7.2E-16 1.6E-20 119.2 12.5 108 82-208 41-148 (201)
39 PF08242 Methyltransf_12: Meth 99.7 9.4E-18 2E-22 118.8 1.3 98 89-202 1-99 (99)
40 PRK12335 tellurite resistance 99.7 9.8E-16 2.1E-20 129.0 13.2 103 84-205 120-222 (287)
41 PF03848 TehB: Tellurite resis 99.7 7.7E-16 1.7E-20 120.3 11.2 106 81-205 27-132 (192)
42 COG4106 Tam Trans-aconitate me 99.7 2.2E-16 4.8E-21 122.4 8.0 109 76-208 22-131 (257)
43 PRK06922 hypothetical protein; 99.7 1.1E-15 2.5E-20 137.7 13.5 109 83-206 417-537 (677)
44 PRK08317 hypothetical protein; 99.7 1.7E-15 3.6E-20 124.2 13.5 116 74-208 9-126 (241)
45 smart00138 MeTrc Methyltransfe 99.7 7.3E-16 1.6E-20 127.9 11.3 115 84-205 99-241 (264)
46 PRK11873 arsM arsenite S-adeno 99.7 8.5E-16 1.9E-20 128.6 11.4 106 82-205 75-182 (272)
47 TIGR03840 TMPT_Se_Te thiopurin 99.7 2.6E-15 5.6E-20 120.6 13.6 125 73-205 23-151 (213)
48 PRK11705 cyclopropane fatty ac 99.6 2.6E-15 5.6E-20 130.8 13.4 112 74-207 157-268 (383)
49 PRK00107 gidB 16S rRNA methylt 99.6 4.5E-15 9.7E-20 116.6 13.0 114 82-218 43-158 (187)
50 PF07021 MetW: Methionine bios 99.6 2.4E-15 5.2E-20 116.0 11.0 110 82-217 11-120 (193)
51 PRK00121 trmB tRNA (guanine-N( 99.6 2.8E-15 6.1E-20 119.8 11.8 117 83-213 39-163 (202)
52 PRK11088 rrmA 23S rRNA methylt 99.6 3.7E-15 8E-20 124.7 12.7 110 73-212 74-187 (272)
53 TIGR00138 gidB 16S rRNA methyl 99.6 7.5E-15 1.6E-19 115.1 13.4 101 84-207 42-143 (181)
54 TIGR02469 CbiT precorrin-6Y C5 99.6 1.1E-14 2.5E-19 107.0 13.5 112 76-207 11-123 (124)
55 smart00828 PKS_MT Methyltransf 99.6 3.3E-15 7.2E-20 121.5 10.2 104 86-207 1-105 (224)
56 PLN03075 nicotianamine synthas 99.6 8.9E-15 1.9E-19 121.4 12.5 111 82-207 121-234 (296)
57 KOG1271 Methyltransferases [Ge 99.6 4.7E-15 1E-19 112.0 9.6 137 67-216 49-193 (227)
58 PRK14121 tRNA (guanine-N(7)-)- 99.6 2.2E-14 4.7E-19 123.4 14.5 164 35-212 73-241 (390)
59 PRK13944 protein-L-isoaspartat 99.6 1.9E-14 4.2E-19 115.3 13.3 112 73-207 61-174 (205)
60 TIGR00091 tRNA (guanine-N(7)-) 99.6 1.1E-14 2.3E-19 115.8 11.6 119 83-212 15-138 (194)
61 TIGR03438 probable methyltrans 99.6 6.9E-14 1.5E-18 118.5 17.0 156 26-206 17-177 (301)
62 PRK13255 thiopurine S-methyltr 99.6 2.5E-14 5.4E-19 115.3 13.6 127 71-204 24-153 (218)
63 PRK06202 hypothetical protein; 99.6 1.9E-14 4.2E-19 117.6 12.7 103 83-206 59-166 (232)
64 PF05175 MTS: Methyltransferas 99.6 4.6E-14 9.9E-19 109.8 13.5 118 76-208 23-142 (170)
65 PLN02336 phosphoethanolamine N 99.6 1.6E-14 3.6E-19 130.1 12.7 110 77-205 30-141 (475)
66 PRK05134 bifunctional 3-demeth 99.6 5.6E-14 1.2E-18 115.0 13.9 146 36-209 8-154 (233)
67 TIGR02021 BchM-ChlM magnesium 99.6 5.5E-14 1.2E-18 113.9 13.7 114 72-204 41-156 (219)
68 PRK13942 protein-L-isoaspartat 99.6 5.6E-14 1.2E-18 113.1 13.1 111 73-207 65-177 (212)
69 PF13659 Methyltransf_26: Meth 99.6 1.9E-14 4.1E-19 104.9 9.3 113 85-208 1-117 (117)
70 TIGR00080 pimt protein-L-isoas 99.6 7.3E-14 1.6E-18 112.8 12.8 111 74-208 67-179 (215)
71 PRK08287 cobalt-precorrin-6Y C 99.5 2.6E-13 5.6E-18 107.3 15.3 108 77-207 24-132 (187)
72 COG4976 Predicted methyltransf 99.5 2.9E-15 6.3E-20 117.2 3.9 138 38-207 89-226 (287)
73 PRK00377 cbiT cobalt-precorrin 99.5 3.3E-13 7.1E-18 107.7 15.3 117 77-212 33-151 (198)
74 TIGR00537 hemK_rel_arch HemK-r 99.5 1.1E-13 2.3E-18 108.7 12.0 109 82-208 17-142 (179)
75 PRK15001 SAM-dependent 23S rib 99.5 2.7E-13 5.9E-18 117.1 15.0 122 74-207 218-341 (378)
76 PRK14967 putative methyltransf 99.5 2.3E-13 5E-18 110.5 13.6 126 76-217 28-173 (223)
77 PRK07580 Mg-protoporphyrin IX 99.5 2.7E-13 6E-18 110.6 13.9 100 83-201 62-161 (230)
78 TIGR02716 C20_methyl_CrtF C-20 99.5 2E-13 4.4E-18 116.1 13.4 113 76-206 141-254 (306)
79 PLN02585 magnesium protoporphy 99.5 7.1E-13 1.5E-17 112.2 16.2 109 84-208 144-252 (315)
80 PRK04266 fibrillarin; Provisio 99.5 3E-13 6.6E-18 109.4 13.2 110 79-207 67-177 (226)
81 PRK13256 thiopurine S-methyltr 99.5 2.9E-13 6.2E-18 108.8 12.8 133 69-206 28-163 (226)
82 PF08003 Methyltransf_9: Prote 99.5 1.3E-13 2.8E-18 113.5 10.8 110 79-206 110-219 (315)
83 COG2242 CobL Precorrin-6B meth 99.5 2.2E-12 4.7E-17 99.1 16.2 121 76-218 26-147 (187)
84 KOG1541 Predicted protein carb 99.5 1E-12 2.2E-17 102.5 14.2 114 74-207 38-161 (270)
85 TIGR01983 UbiG ubiquinone bios 99.5 5.6E-13 1.2E-17 108.4 13.4 108 84-209 45-152 (224)
86 TIGR00406 prmA ribosomal prote 99.5 4.3E-13 9.2E-18 113.0 12.7 105 82-208 157-261 (288)
87 KOG2361 Predicted methyltransf 99.5 5.8E-13 1.3E-17 105.3 11.9 130 67-209 51-186 (264)
88 PRK11188 rrmJ 23S rRNA methylt 99.5 3.8E-13 8.2E-18 107.9 11.1 109 82-210 49-169 (209)
89 TIGR03533 L3_gln_methyl protei 99.5 2E-12 4.4E-17 108.5 15.8 114 83-210 120-255 (284)
90 PRK09489 rsmC 16S ribosomal RN 99.5 9.7E-13 2.1E-17 112.9 14.0 115 76-207 188-304 (342)
91 TIGR01177 conserved hypothetic 99.5 4.9E-13 1.1E-17 114.8 11.8 118 80-212 178-300 (329)
92 PRK07402 precorrin-6B methylas 99.5 2.1E-12 4.6E-17 102.8 14.5 114 77-212 33-148 (196)
93 PF05891 Methyltransf_PK: AdoM 99.5 1.8E-12 3.9E-17 102.1 13.0 106 84-205 55-160 (218)
94 PRK00312 pcm protein-L-isoaspa 99.5 1.3E-12 2.7E-17 105.4 12.6 107 76-207 70-176 (212)
95 TIGR02081 metW methionine bios 99.5 8.6E-13 1.9E-17 104.9 11.5 102 83-212 12-115 (194)
96 PRK11805 N5-glutamine S-adenos 99.4 5.9E-12 1.3E-16 106.7 15.6 111 86-210 135-267 (307)
97 COG2264 PrmA Ribosomal protein 99.4 1E-12 2.2E-17 108.9 10.6 103 83-206 161-263 (300)
98 PRK04457 spermidine synthase; 99.4 3E-12 6.6E-17 106.2 13.5 115 83-209 65-180 (262)
99 PRK14968 putative methyltransf 99.4 4.2E-12 9E-17 100.3 13.0 112 83-208 22-150 (188)
100 COG2518 Pcm Protein-L-isoaspar 99.4 3.4E-12 7.4E-17 100.2 11.8 110 73-207 61-170 (209)
101 PRK00517 prmA ribosomal protei 99.4 2.2E-12 4.7E-17 106.6 10.8 98 82-207 117-214 (250)
102 PF01135 PCMT: Protein-L-isoas 99.4 2E-12 4.3E-17 103.3 9.9 111 73-207 61-173 (209)
103 PF05724 TPMT: Thiopurine S-me 99.4 3.4E-12 7.3E-17 102.7 11.2 130 66-202 19-151 (218)
104 cd02440 AdoMet_MTases S-adenos 99.4 6.1E-12 1.3E-16 88.6 11.4 103 87-205 1-103 (107)
105 KOG3010 Methyltransferase [Gen 99.4 8.8E-13 1.9E-17 104.3 7.4 114 70-204 21-135 (261)
106 TIGR00536 hemK_fam HemK family 99.4 8.6E-12 1.9E-16 104.9 14.0 110 86-209 116-247 (284)
107 TIGR03534 RF_mod_PrmC protein- 99.4 8.5E-12 1.8E-16 103.1 13.6 111 83-208 86-219 (251)
108 PF06325 PrmA: Ribosomal prote 99.4 2.8E-12 6E-17 107.3 10.3 111 82-216 159-272 (295)
109 PTZ00146 fibrillarin; Provisio 99.4 4.2E-12 9.1E-17 105.2 11.3 108 79-206 127-237 (293)
110 PRK00811 spermidine synthase; 99.4 5.4E-12 1.2E-16 105.9 11.8 119 82-208 74-193 (283)
111 PRK13943 protein-L-isoaspartat 99.4 9.9E-12 2.1E-16 105.5 13.0 108 75-206 71-180 (322)
112 TIGR00438 rrmJ cell division p 99.4 5.1E-12 1.1E-16 100.0 10.1 107 82-209 30-149 (188)
113 COG2519 GCD14 tRNA(1-methylade 99.4 1.7E-11 3.7E-16 98.3 12.6 119 76-217 86-206 (256)
114 PRK14901 16S rRNA methyltransf 99.4 1.1E-11 2.5E-16 110.1 12.8 118 80-207 248-385 (434)
115 PRK14966 unknown domain/N5-glu 99.3 2E-11 4.4E-16 105.8 13.6 112 83-208 250-383 (423)
116 PRK09328 N5-glutamine S-adenos 99.3 3E-11 6.5E-16 101.3 14.1 113 81-208 105-240 (275)
117 smart00650 rADc Ribosomal RNA 99.3 1.2E-11 2.5E-16 96.2 10.8 111 75-207 4-114 (169)
118 PRK14903 16S rRNA methyltransf 99.3 1.8E-11 3.9E-16 108.4 13.1 116 80-208 233-368 (431)
119 PRK14904 16S rRNA methyltransf 99.3 2.1E-11 4.5E-16 108.8 13.3 113 81-208 247-379 (445)
120 PRK10901 16S rRNA methyltransf 99.3 3E-11 6.5E-16 107.3 14.0 115 80-207 240-373 (427)
121 PF02390 Methyltransf_4: Putat 99.3 2.4E-11 5.2E-16 96.3 11.7 123 82-215 15-142 (195)
122 TIGR00446 nop2p NOL1/NOP2/sun 99.3 1.2E-11 2.5E-16 103.0 10.3 115 80-208 67-201 (264)
123 COG2813 RsmC 16S RNA G1207 met 99.3 4.2E-11 9.1E-16 98.9 13.3 138 54-207 128-267 (300)
124 COG4123 Predicted O-methyltran 99.3 9.3E-12 2E-16 100.6 9.2 116 83-209 43-173 (248)
125 PLN02232 ubiquinone biosynthes 99.3 7E-12 1.5E-16 96.5 7.9 82 111-207 1-82 (160)
126 PRK15128 23S rRNA m(5)C1962 me 99.3 3.2E-11 6.8E-16 105.4 11.3 116 83-207 219-340 (396)
127 PF01739 CheR: CheR methyltran 99.3 2.4E-11 5.2E-16 96.0 9.3 115 84-205 31-174 (196)
128 PHA03411 putative methyltransf 99.3 4.2E-11 9.1E-16 98.2 10.9 104 83-206 63-183 (279)
129 PLN02781 Probable caffeoyl-CoA 99.3 6.1E-11 1.3E-15 96.8 11.7 108 83-206 67-178 (234)
130 PRK11783 rlmL 23S rRNA m(2)G24 99.3 4.9E-11 1.1E-15 111.8 12.2 113 84-208 538-658 (702)
131 PRK01544 bifunctional N5-gluta 99.3 1E-10 2.2E-15 105.6 13.5 110 85-208 139-271 (506)
132 TIGR03704 PrmC_rel_meth putati 99.2 1.8E-10 4E-15 95.0 13.5 109 85-208 87-218 (251)
133 TIGR00563 rsmB ribosomal RNA s 99.2 9.3E-11 2E-15 104.1 12.4 119 79-208 233-370 (426)
134 PRK14902 16S rRNA methyltransf 99.2 1.2E-10 2.5E-15 104.1 12.8 115 80-207 246-380 (444)
135 PF08704 GCD14: tRNA methyltra 99.2 1.1E-10 2.4E-15 95.2 11.5 123 75-216 31-156 (247)
136 TIGR00417 speE spermidine synt 99.2 3.5E-10 7.6E-15 94.5 14.2 115 83-208 71-188 (270)
137 PRK13168 rumA 23S rRNA m(5)U19 99.2 1.5E-10 3.2E-15 103.3 12.3 126 72-217 285-410 (443)
138 KOG2904 Predicted methyltransf 99.2 5.8E-10 1.3E-14 90.0 13.5 130 70-207 131-286 (328)
139 PRK01581 speE spermidine synth 99.2 1.9E-10 4.1E-15 98.0 11.1 120 82-209 148-271 (374)
140 PLN02366 spermidine synthase 99.2 3E-10 6.5E-15 96.0 12.0 117 82-206 89-206 (308)
141 PHA03412 putative methyltransf 99.2 1.6E-10 3.5E-15 92.7 9.7 98 84-201 49-158 (241)
142 PRK10909 rsmD 16S rRNA m(2)G96 99.2 6E-10 1.3E-14 88.4 12.6 108 83-208 52-161 (199)
143 COG2890 HemK Methylase of poly 99.2 1.4E-09 3.1E-14 91.0 15.2 105 87-207 113-239 (280)
144 PF00891 Methyltransf_2: O-met 99.2 3.7E-10 8E-15 92.9 11.5 98 83-206 99-199 (241)
145 KOG2899 Predicted methyltransf 99.2 2.1E-10 4.7E-15 90.9 9.4 121 84-205 58-208 (288)
146 KOG1499 Protein arginine N-met 99.2 1.9E-10 4E-15 96.3 9.5 117 72-203 48-164 (346)
147 PRK10611 chemotaxis methyltran 99.2 4.3E-10 9.3E-15 93.8 11.5 116 85-206 116-262 (287)
148 COG2263 Predicted RNA methylas 99.2 3.1E-10 6.7E-15 87.1 9.7 75 82-174 43-117 (198)
149 COG0220 Predicted S-adenosylme 99.1 6.3E-10 1.4E-14 89.7 11.6 118 86-214 50-172 (227)
150 PRK03522 rumB 23S rRNA methylu 99.1 4.9E-10 1.1E-14 95.7 11.7 112 84-217 173-284 (315)
151 COG1041 Predicted DNA modifica 99.1 6E-10 1.3E-14 93.8 11.3 130 63-207 175-311 (347)
152 PRK03612 spermidine synthase; 99.1 4.5E-10 9.7E-15 102.0 11.2 117 83-207 296-416 (521)
153 PF05219 DREV: DREV methyltran 99.1 4.8E-10 1E-14 90.5 9.8 95 84-206 94-188 (265)
154 PF06080 DUF938: Protein of un 99.1 8.3E-10 1.8E-14 86.7 10.6 122 76-207 17-142 (204)
155 PF05148 Methyltransf_8: Hypot 99.1 3.8E-10 8.1E-15 88.2 8.0 100 83-218 71-175 (219)
156 PLN02476 O-methyltransferase 99.1 2.1E-09 4.6E-14 89.0 12.6 107 83-205 117-227 (278)
157 PF01170 UPF0020: Putative RNA 99.1 3.2E-09 6.9E-14 83.1 12.4 128 67-208 10-152 (179)
158 COG1092 Predicted SAM-dependen 99.1 1.2E-09 2.7E-14 94.4 10.5 118 84-209 217-339 (393)
159 TIGR02085 meth_trns_rumB 23S r 99.0 5.7E-09 1.2E-13 91.1 14.3 115 83-219 232-346 (374)
160 COG1352 CheR Methylase of chem 99.0 3.9E-09 8.3E-14 87.0 12.0 114 85-205 97-240 (268)
161 PF01596 Methyltransf_3: O-met 99.0 1.1E-09 2.4E-14 87.2 8.5 108 83-206 44-155 (205)
162 KOG2940 Predicted methyltransf 99.0 5.7E-10 1.2E-14 87.8 6.4 107 84-210 72-178 (325)
163 PF10672 Methyltrans_SAM: S-ad 99.0 2.5E-09 5.4E-14 89.1 10.3 139 64-218 109-254 (286)
164 KOG1500 Protein arginine N-met 99.0 2.1E-09 4.5E-14 89.1 9.6 116 74-206 167-282 (517)
165 COG4122 Predicted O-methyltran 99.0 4.6E-09 1E-13 83.8 11.0 107 82-206 57-166 (219)
166 PRK00274 ksgA 16S ribosomal RN 99.0 5.5E-09 1.2E-13 87.3 11.9 85 73-175 31-115 (272)
167 TIGR00479 rumA 23S rRNA (uraci 99.0 5.3E-09 1.2E-13 93.2 12.3 121 77-216 285-405 (431)
168 PF05185 PRMT5: PRMT5 arginine 99.0 6.1E-09 1.3E-13 92.4 11.9 103 85-203 187-294 (448)
169 PRK14896 ksgA 16S ribosomal RN 99.0 3.6E-09 7.8E-14 87.8 9.8 87 71-176 16-102 (258)
170 KOG1331 Predicted methyltransf 99.0 1E-09 2.3E-14 89.3 6.0 102 83-208 44-145 (293)
171 PF10294 Methyltransf_16: Puta 99.0 5.9E-09 1.3E-13 81.2 10.1 115 82-208 43-158 (173)
172 TIGR00095 RNA methyltransferas 99.0 7.4E-09 1.6E-13 81.8 10.7 111 84-208 49-161 (189)
173 COG3963 Phospholipid N-methylt 99.0 9.2E-09 2E-13 77.2 10.1 119 74-208 38-158 (194)
174 PLN02672 methionine S-methyltr 98.9 7.1E-09 1.5E-13 99.8 11.7 121 85-209 119-281 (1082)
175 PF12147 Methyltransf_20: Puta 98.9 3.5E-08 7.6E-13 80.9 14.0 112 84-206 135-249 (311)
176 KOG3045 Predicted RNA methylas 98.9 3.9E-09 8.4E-14 84.6 8.2 86 83-206 179-264 (325)
177 PLN02589 caffeoyl-CoA O-methyl 98.9 1.7E-08 3.7E-13 82.6 10.9 107 83-205 78-189 (247)
178 PTZ00338 dimethyladenosine tra 98.9 8.3E-09 1.8E-13 86.8 9.0 89 72-176 24-112 (294)
179 PF03602 Cons_hypoth95: Conser 98.9 1.9E-08 4E-13 78.9 9.7 114 83-209 41-156 (183)
180 PLN02823 spermine synthase 98.9 7.7E-08 1.7E-12 82.3 14.1 115 83-206 102-220 (336)
181 TIGR03439 methyl_EasF probable 98.8 3.4E-07 7.3E-12 77.7 16.7 124 83-217 75-211 (319)
182 PRK01544 bifunctional N5-gluta 98.8 2.7E-08 6E-13 90.0 10.4 122 83-216 346-472 (506)
183 TIGR00755 ksgA dimethyladenosi 98.8 5.8E-08 1.3E-12 80.4 11.6 86 71-175 16-104 (253)
184 KOG1661 Protein-L-isoaspartate 98.8 3.1E-08 6.7E-13 77.2 9.1 116 76-206 72-193 (237)
185 TIGR00478 tly hemolysin TlyA f 98.8 3.7E-08 8.1E-13 79.7 9.9 96 83-205 74-170 (228)
186 PRK11727 23S rRNA mA1618 methy 98.8 6.3E-08 1.4E-12 82.1 11.6 85 84-176 114-200 (321)
187 PRK11933 yebU rRNA (cytosine-C 98.8 7.9E-08 1.7E-12 85.7 12.6 115 81-208 110-244 (470)
188 PF02475 Met_10: Met-10+ like- 98.8 5E-08 1.1E-12 77.3 10.1 100 82-203 99-199 (200)
189 KOG3420 Predicted RNA methylas 98.8 6.1E-09 1.3E-13 76.2 4.2 78 83-175 47-124 (185)
190 COG0421 SpeE Spermidine syntha 98.8 1E-07 2.2E-12 79.4 11.0 114 86-208 78-192 (282)
191 PF02384 N6_Mtase: N-6 DNA Met 98.8 7.2E-08 1.6E-12 82.3 10.3 136 61-209 26-186 (311)
192 PRK04338 N(2),N(2)-dimethylgua 98.7 6.3E-08 1.4E-12 84.4 10.0 106 85-212 58-164 (382)
193 KOG3191 Predicted N6-DNA-methy 98.7 7.6E-07 1.6E-11 67.9 13.6 111 83-209 42-171 (209)
194 PRK04148 hypothetical protein; 98.7 3.4E-07 7.3E-12 67.4 10.8 94 83-206 15-109 (134)
195 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.7 8.4E-08 1.8E-12 78.6 8.5 122 84-205 56-198 (256)
196 PRK00050 16S rRNA m(4)C1402 me 98.7 6.5E-08 1.4E-12 81.0 7.8 87 73-173 8-98 (296)
197 PF11968 DUF3321: Putative met 98.7 1.4E-07 3.1E-12 74.4 9.0 115 66-209 32-152 (219)
198 PF01564 Spermine_synth: Sperm 98.7 1.1E-07 2.3E-12 78.3 8.4 117 82-207 74-192 (246)
199 PF07942 N2227: N2227-like pro 98.7 2E-06 4.4E-11 70.9 15.7 113 84-203 56-199 (270)
200 PF01728 FtsJ: FtsJ-like methy 98.7 6.4E-08 1.4E-12 76.0 6.6 105 84-208 23-141 (181)
201 PF02527 GidB: rRNA small subu 98.7 3.5E-07 7.6E-12 71.6 10.6 97 87-206 51-148 (184)
202 COG0742 N6-adenine-specific me 98.6 4.7E-07 1E-11 70.2 11.1 114 83-209 42-157 (187)
203 PRK00536 speE spermidine synth 98.6 4.6E-07 1E-11 74.7 11.3 104 81-207 69-172 (262)
204 PF08123 DOT1: Histone methyla 98.6 2.2E-07 4.9E-12 74.0 9.2 126 72-204 30-156 (205)
205 PRK05031 tRNA (uracil-5-)-meth 98.6 4.3E-07 9.4E-12 79.0 11.3 113 85-218 207-331 (362)
206 KOG3178 Hydroxyindole-O-methyl 98.6 2E-07 4.4E-12 78.4 8.9 97 86-206 179-275 (342)
207 PRK11783 rlmL 23S rRNA m(2)G24 98.6 8.7E-07 1.9E-11 83.5 14.1 118 83-211 189-352 (702)
208 TIGR02143 trmA_only tRNA (urac 98.6 4.3E-07 9.3E-12 78.7 11.2 114 85-218 198-322 (353)
209 TIGR00308 TRM1 tRNA(guanine-26 98.6 2.7E-07 5.9E-12 80.1 9.6 107 85-212 45-153 (374)
210 PF03141 Methyltransf_29: Puta 98.6 5.8E-08 1.3E-12 85.2 4.9 117 68-207 97-220 (506)
211 COG0116 Predicted N6-adenine-s 98.6 2E-06 4.4E-11 73.7 13.8 141 66-219 172-357 (381)
212 KOG0820 Ribosomal RNA adenine 98.6 8E-07 1.7E-11 72.1 10.3 85 73-173 47-131 (315)
213 COG2520 Predicted methyltransf 98.5 1.2E-06 2.6E-11 74.5 11.1 103 83-206 187-289 (341)
214 TIGR02987 met_A_Alw26 type II 98.5 1.4E-06 3.1E-11 79.6 11.9 117 84-209 31-199 (524)
215 COG2265 TrmA SAM-dependent met 98.5 8.2E-07 1.8E-11 78.5 9.7 123 76-218 285-407 (432)
216 COG2521 Predicted archaeal met 98.5 3.4E-07 7.4E-12 72.6 6.3 116 82-209 132-248 (287)
217 COG0030 KsgA Dimethyladenosine 98.5 9.9E-07 2.1E-11 72.2 9.1 88 72-175 18-105 (259)
218 KOG1269 SAM-dependent methyltr 98.5 3E-07 6.5E-12 79.2 6.2 107 82-205 108-214 (364)
219 COG0293 FtsJ 23S rRNA methylas 98.5 1.8E-06 3.9E-11 68.0 9.8 116 82-218 43-174 (205)
220 KOG2730 Methylase [General fun 98.4 1.1E-06 2.4E-11 69.1 8.1 131 33-175 45-175 (263)
221 COG0144 Sun tRNA and rRNA cyto 98.4 6.1E-06 1.3E-10 71.5 13.5 118 80-208 152-290 (355)
222 PF01269 Fibrillarin: Fibrilla 98.4 3E-06 6.6E-11 67.2 10.5 105 79-206 68-178 (229)
223 KOG2915 tRNA(1-methyladenosine 98.4 3.2E-06 6.9E-11 68.6 10.2 118 74-211 95-215 (314)
224 COG0357 GidB Predicted S-adeno 98.4 3.9E-06 8.5E-11 66.9 10.2 97 85-204 68-166 (215)
225 PF09243 Rsm22: Mitochondrial 98.3 7.9E-06 1.7E-10 68.4 11.6 108 83-208 32-141 (274)
226 PF05958 tRNA_U5-meth_tr: tRNA 98.3 1.4E-05 2.9E-10 69.4 13.3 122 76-218 189-321 (352)
227 COG0500 SmtA SAM-dependent met 98.3 9E-06 2E-10 61.5 11.1 101 88-209 52-158 (257)
228 PF09445 Methyltransf_15: RNA 98.3 1.2E-06 2.6E-11 66.8 5.4 76 86-172 1-76 (163)
229 KOG1663 O-methyltransferase [S 98.3 1.7E-05 3.8E-10 63.0 11.8 108 83-206 72-183 (237)
230 PF13679 Methyltransf_32: Meth 98.3 1.7E-05 3.6E-10 59.6 10.9 118 69-207 9-132 (141)
231 KOG2352 Predicted spermine/spe 98.2 7.5E-06 1.6E-10 71.9 9.7 107 83-204 46-159 (482)
232 PF00398 RrnaAD: Ribosomal RNA 98.2 2.8E-05 6E-10 64.8 12.2 91 71-175 17-107 (262)
233 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.1 1.7E-05 3.6E-10 66.7 9.6 116 80-207 81-220 (283)
234 KOG3987 Uncharacterized conser 98.1 4.9E-07 1.1E-11 70.4 -0.2 94 84-205 112-206 (288)
235 PF04816 DUF633: Family of unk 98.1 7.4E-05 1.6E-09 59.6 12.2 117 88-223 1-118 (205)
236 PRK11760 putative 23S rRNA C24 98.1 2.9E-05 6.2E-10 65.9 10.2 94 83-206 210-305 (357)
237 PF04672 Methyltransf_19: S-ad 98.1 4.5E-05 9.8E-10 62.6 10.9 130 67-207 50-191 (267)
238 KOG1122 tRNA and rRNA cytosine 98.1 6.9E-05 1.5E-09 64.6 11.5 116 80-207 237-372 (460)
239 KOG4589 Cell division protein 98.0 2.7E-05 5.8E-10 59.9 7.8 106 82-209 67-187 (232)
240 TIGR00006 S-adenosyl-methyltra 98.0 2.1E-05 4.6E-10 66.2 8.0 91 73-173 9-100 (305)
241 COG4076 Predicted RNA methylas 98.0 9.2E-06 2E-10 62.4 5.0 100 85-203 33-132 (252)
242 PF03059 NAS: Nicotianamine sy 98.0 0.0001 2.2E-09 61.1 11.6 109 85-208 121-232 (276)
243 KOG1709 Guanidinoacetate methy 98.0 0.00012 2.6E-09 57.7 11.1 106 83-205 100-205 (271)
244 COG1889 NOP1 Fibrillarin-like 98.0 0.00011 2.4E-09 57.3 10.5 109 79-206 71-180 (231)
245 COG4262 Predicted spermidine s 97.9 0.00012 2.6E-09 62.1 9.9 118 83-208 288-409 (508)
246 PF13578 Methyltransf_24: Meth 97.9 1.7E-05 3.6E-10 56.4 3.9 100 89-205 1-104 (106)
247 COG3897 Predicted methyltransf 97.9 5.3E-05 1.2E-09 58.8 6.6 107 84-212 79-185 (218)
248 PF11599 AviRa: RRNA methyltra 97.9 0.0001 2.2E-09 58.1 8.2 161 67-227 34-235 (246)
249 KOG2187 tRNA uracil-5-methyltr 97.8 0.00014 3E-09 64.3 9.4 63 82-154 381-443 (534)
250 COG1189 Predicted rRNA methyla 97.8 0.00012 2.5E-09 58.8 8.0 100 83-206 78-178 (245)
251 PF05971 Methyltransf_10: Prot 97.7 0.00025 5.4E-09 59.5 9.4 103 68-177 84-189 (299)
252 COG4627 Uncharacterized protei 97.7 9.1E-06 2E-10 60.5 0.6 55 162-218 44-98 (185)
253 PF06962 rRNA_methylase: Putat 97.7 0.00043 9.2E-09 51.4 8.7 88 109-207 1-93 (140)
254 KOG3201 Uncharacterized conser 97.5 0.00013 2.8E-09 54.9 4.5 116 83-211 28-145 (201)
255 TIGR01444 fkbM_fam methyltrans 97.5 0.00022 4.7E-09 53.5 5.8 43 87-129 1-44 (143)
256 PF04989 CmcI: Cephalosporin h 97.5 0.0005 1.1E-08 54.5 7.4 110 84-208 32-149 (206)
257 COG0286 HsdM Type I restrictio 97.5 0.0014 3E-08 59.5 11.2 137 61-208 166-328 (489)
258 COG2384 Predicted SAM-dependen 97.4 0.0086 1.9E-07 47.7 13.7 117 83-218 15-132 (226)
259 PF01795 Methyltransf_5: MraW 97.4 0.00073 1.6E-08 57.0 7.8 91 73-173 9-101 (310)
260 KOG4058 Uncharacterized conser 97.4 0.0019 4.1E-08 48.0 8.7 122 67-210 55-177 (199)
261 KOG2798 Putative trehalase [Ca 97.4 0.002 4.4E-08 53.7 9.7 112 85-203 151-293 (369)
262 PRK10742 putative methyltransf 97.3 0.0009 2E-08 54.5 7.5 96 76-177 78-176 (250)
263 KOG1596 Fibrillarin and relate 97.3 0.0018 4E-08 52.0 8.2 106 77-206 149-261 (317)
264 COG5459 Predicted rRNA methyla 97.3 0.00088 1.9E-08 56.7 6.6 113 84-208 113-227 (484)
265 KOG3115 Methyltransferase-like 97.2 0.0015 3.2E-08 51.2 7.1 119 84-206 60-183 (249)
266 COG0275 Predicted S-adenosylme 97.2 0.0027 5.9E-08 52.9 8.6 90 73-172 12-103 (314)
267 PF07091 FmrO: Ribosomal RNA m 97.2 0.0024 5.2E-08 52.0 8.0 79 84-178 105-184 (251)
268 PF02005 TRM: N2,N2-dimethylgu 97.1 0.0018 4E-08 56.5 7.2 109 84-212 49-160 (377)
269 PF01861 DUF43: Protein of unk 97.0 0.031 6.7E-07 45.3 13.0 108 83-209 43-152 (243)
270 PF03141 Methyltransf_29: Puta 97.0 0.0014 3.1E-08 58.1 5.7 98 85-205 366-466 (506)
271 KOG2671 Putative RNA methylase 97.0 0.0019 4.1E-08 54.5 6.0 121 81-207 205-355 (421)
272 KOG2198 tRNA cytosine-5-methyl 96.9 0.01 2.2E-07 50.8 10.1 121 80-209 151-299 (375)
273 KOG1562 Spermidine synthase [A 96.9 0.0069 1.5E-07 50.3 8.6 120 82-209 119-239 (337)
274 COG1064 AdhP Zn-dependent alco 96.9 0.0058 1.3E-07 52.3 8.2 94 81-205 163-258 (339)
275 PRK11524 putative methyltransf 96.8 0.0034 7.4E-08 52.9 6.7 49 79-128 203-251 (284)
276 PF01555 N6_N4_Mtase: DNA meth 96.8 0.0034 7.4E-08 50.6 6.3 51 73-125 181-231 (231)
277 PF03492 Methyltransf_7: SAM d 96.7 0.02 4.4E-07 49.3 10.3 118 83-207 15-184 (334)
278 cd00315 Cyt_C5_DNA_methylase C 96.7 0.0049 1.1E-07 51.7 6.3 72 87-176 2-73 (275)
279 KOG2793 Putative N2,N2-dimethy 96.6 0.012 2.5E-07 48.2 8.1 115 85-208 87-201 (248)
280 TIGR00027 mthyl_TIGR00027 meth 96.6 0.047 1E-06 45.4 11.6 114 85-208 82-199 (260)
281 PHA01634 hypothetical protein 96.5 0.017 3.7E-07 41.9 7.1 45 84-128 28-72 (156)
282 PRK13699 putative methylase; P 96.4 0.011 2.4E-07 48.1 6.6 48 81-129 160-207 (227)
283 KOG1501 Arginine N-methyltrans 96.4 0.0049 1.1E-07 53.8 4.7 61 87-155 69-129 (636)
284 COG4301 Uncharacterized conser 96.4 0.27 5.9E-06 40.1 14.0 111 84-207 78-194 (321)
285 PLN02668 indole-3-acetate carb 96.4 0.072 1.6E-06 46.6 11.6 47 161-207 158-238 (386)
286 PF04445 SAM_MT: Putative SAM- 96.3 0.0044 9.5E-08 50.2 3.5 96 77-177 66-163 (234)
287 COG4798 Predicted methyltransf 96.3 0.029 6.3E-07 43.9 7.7 111 82-207 46-167 (238)
288 PF06859 Bin3: Bicoid-interact 96.2 0.0026 5.6E-08 44.9 1.6 42 165-206 1-44 (110)
289 COG3129 Predicted SAM-dependen 96.2 0.036 7.8E-07 44.5 8.1 86 84-176 78-164 (292)
290 PF03269 DUF268: Caenorhabditi 96.2 0.0038 8.3E-08 47.1 2.6 45 163-207 61-112 (177)
291 COG1867 TRM1 N2,N2-dimethylgua 96.1 0.024 5.3E-07 48.6 7.2 107 85-212 53-160 (380)
292 KOG1253 tRNA methyltransferase 96.1 0.0036 7.7E-08 55.4 2.2 112 84-212 109-222 (525)
293 COG1063 Tdh Threonine dehydrog 96.0 0.044 9.5E-07 47.7 8.9 98 83-205 167-268 (350)
294 PRK09424 pntA NAD(P) transhydr 96.0 0.036 7.7E-07 50.4 8.4 103 83-205 163-284 (509)
295 KOG3924 Putative protein methy 95.8 0.052 1.1E-06 47.0 8.1 129 69-206 177-308 (419)
296 PF07757 AdoMet_MTase: Predict 95.7 0.023 5E-07 39.9 4.6 33 84-117 58-90 (112)
297 cd08283 FDH_like_1 Glutathione 95.7 0.067 1.4E-06 47.1 8.6 109 81-205 181-305 (386)
298 KOG2920 Predicted methyltransf 95.7 0.0079 1.7E-07 49.7 2.5 115 82-204 114-232 (282)
299 KOG0024 Sorbitol dehydrogenase 95.5 0.1 2.3E-06 44.1 8.5 101 81-206 166-273 (354)
300 PRK09880 L-idonate 5-dehydroge 95.4 0.09 2E-06 45.4 8.4 97 82-205 167-265 (343)
301 KOG0822 Protein kinase inhibit 95.4 0.081 1.8E-06 47.5 7.8 103 86-204 369-476 (649)
302 PRK11524 putative methyltransf 95.1 0.092 2E-06 44.3 7.2 61 144-207 9-81 (284)
303 KOG1099 SAM-dependent methyltr 95.0 0.043 9.3E-07 44.0 4.5 102 85-207 42-164 (294)
304 KOG1227 Putative methyltransfe 95.0 0.018 3.9E-07 48.0 2.4 96 84-201 194-290 (351)
305 COG1565 Uncharacterized conser 94.9 0.14 3E-06 44.1 7.7 64 67-130 60-132 (370)
306 PF02636 Methyltransf_28: Puta 94.8 0.068 1.5E-06 44.2 5.5 60 70-129 3-72 (252)
307 KOG2539 Mitochondrial/chloropl 94.4 0.18 3.8E-06 44.8 7.3 110 84-207 200-316 (491)
308 TIGR00561 pntA NAD(P) transhyd 94.4 0.11 2.4E-06 47.2 6.2 100 84-203 163-281 (511)
309 PRK13699 putative methylase; P 94.3 0.22 4.7E-06 40.5 7.3 82 144-231 2-98 (227)
310 PF02254 TrkA_N: TrkA-N domain 94.3 0.48 1E-05 33.7 8.4 95 93-211 4-101 (116)
311 COG3510 CmcI Cephalosporin hyd 94.2 0.47 1E-05 37.2 8.4 108 83-208 68-182 (237)
312 COG3315 O-Methyltransferase in 94.1 1 2.2E-05 38.2 11.3 114 85-207 93-210 (297)
313 TIGR00675 dcm DNA-methyltransf 94.1 0.29 6.4E-06 41.9 8.1 68 88-174 1-68 (315)
314 PF03514 GRAS: GRAS domain fam 93.9 0.63 1.4E-05 40.9 9.9 125 75-205 101-243 (374)
315 PF05711 TylF: Macrocin-O-meth 93.6 1.3 2.9E-05 36.4 10.6 109 84-209 74-215 (248)
316 TIGR00497 hsdM type I restrict 93.4 1.5 3.2E-05 40.2 11.8 68 60-128 194-266 (501)
317 cd08254 hydroxyacyl_CoA_DH 6-h 93.3 0.73 1.6E-05 39.3 9.2 98 82-205 163-262 (338)
318 PF00145 DNA_methylase: C-5 cy 93.1 0.16 3.4E-06 43.4 4.7 69 87-174 2-70 (335)
319 PF04072 LCM: Leucine carboxyl 93.0 0.59 1.3E-05 36.6 7.6 100 84-192 77-182 (183)
320 PF11312 DUF3115: Protein of u 92.9 0.47 1E-05 40.1 7.0 120 86-205 88-241 (315)
321 PTZ00357 methyltransferase; Pr 92.8 0.49 1.1E-05 44.3 7.5 110 87-201 703-830 (1072)
322 cd08237 ribitol-5-phosphate_DH 92.8 0.61 1.3E-05 40.3 8.1 92 82-205 161-255 (341)
323 KOG2651 rRNA adenine N-6-methy 92.6 0.38 8.3E-06 41.6 6.2 42 84-125 153-194 (476)
324 TIGR03366 HpnZ_proposed putati 92.2 0.89 1.9E-05 38.0 8.1 98 82-205 118-217 (280)
325 TIGR02822 adh_fam_2 zinc-bindi 92.2 1.9 4.1E-05 37.0 10.3 91 81-205 162-253 (329)
326 PRK01747 mnmC bifunctional tRN 92.1 0.69 1.5E-05 43.9 8.0 116 84-205 57-205 (662)
327 PF11899 DUF3419: Protein of u 92.0 0.38 8.3E-06 42.2 5.7 60 142-206 275-334 (380)
328 cd08281 liver_ADH_like1 Zinc-d 91.7 1.1 2.4E-05 39.1 8.4 98 81-205 188-289 (371)
329 cd05188 MDR Medium chain reduc 91.5 1.6 3.5E-05 35.6 8.8 98 83-205 133-231 (271)
330 KOG1098 Putative SAM-dependent 91.4 0.39 8.4E-06 44.1 5.2 104 82-206 42-158 (780)
331 COG0270 Dcm Site-specific DNA 91.3 0.66 1.4E-05 40.0 6.5 77 85-177 3-79 (328)
332 PF00107 ADH_zinc_N: Zinc-bind 91.1 0.61 1.3E-05 33.8 5.3 85 96-206 3-89 (130)
333 cd00401 AdoHcyase S-adenosyl-L 91.0 0.91 2E-05 40.3 7.1 86 84-205 201-288 (413)
334 cd08230 glucose_DH Glucose deh 90.9 1.2 2.7E-05 38.5 7.9 94 83-205 171-268 (355)
335 COG0686 Ald Alanine dehydrogen 90.7 0.93 2E-05 38.4 6.4 98 84-203 167-265 (371)
336 cd08239 THR_DH_like L-threonin 90.5 2 4.3E-05 36.8 8.7 100 80-205 159-261 (339)
337 PRK10669 putative cation:proto 90.4 2.4 5.2E-05 39.4 9.7 101 86-210 418-519 (558)
338 COG1568 Predicted methyltransf 90.4 2.2 4.8E-05 35.5 8.2 107 84-208 152-262 (354)
339 PRK03562 glutathione-regulated 90.1 3.1 6.6E-05 39.3 10.1 103 85-211 400-503 (621)
340 PF10354 DUF2431: Domain of un 89.8 2.7 5.8E-05 32.4 8.0 62 147-209 58-128 (166)
341 PRK03659 glutathione-regulated 89.7 3.3 7.2E-05 38.9 10.0 102 86-211 401-503 (601)
342 TIGR03451 mycoS_dep_FDH mycoth 89.4 4.1 8.8E-05 35.3 9.8 99 81-205 173-275 (358)
343 PRK10458 DNA cytosine methylas 89.3 1.6 3.5E-05 39.5 7.4 43 85-127 88-130 (467)
344 TIGR01202 bchC 2-desacetyl-2-h 88.7 2.1 4.5E-05 36.3 7.4 86 83-205 143-230 (308)
345 cd08232 idonate-5-DH L-idonate 88.6 3.3 7.1E-05 35.4 8.6 95 84-205 165-261 (339)
346 PF11899 DUF3419: Protein of u 88.5 1.2 2.5E-05 39.2 5.7 49 78-127 29-77 (380)
347 KOG2078 tRNA modification enzy 88.4 0.45 9.8E-06 41.8 3.1 62 83-153 248-310 (495)
348 PRK10309 galactitol-1-phosphat 88.3 3.1 6.7E-05 35.8 8.3 44 82-125 158-203 (347)
349 PLN02740 Alcohol dehydrogenase 87.8 3.7 8E-05 36.0 8.6 45 81-125 195-241 (381)
350 PF02737 3HCDH_N: 3-hydroxyacy 87.2 4.5 9.8E-05 31.5 7.9 107 87-208 1-116 (180)
351 COG0863 DNA modification methy 87.1 2.3 5E-05 35.8 6.7 55 73-129 212-266 (302)
352 COG2933 Predicted SAM-dependen 87.0 4.3 9.3E-05 33.6 7.7 87 83-199 210-296 (358)
353 cd08245 CAD Cinnamyl alcohol d 86.2 9.4 0.0002 32.4 10.1 96 81-205 159-255 (330)
354 PF10237 N6-adenineMlase: Prob 86.0 14 0.00029 28.4 10.5 100 83-209 24-126 (162)
355 KOG2352 Predicted spermine/spe 85.8 2 4.4E-05 38.5 5.7 114 84-206 295-416 (482)
356 PLN03154 putative allyl alcoho 85.2 5.4 0.00012 34.5 8.2 97 81-205 155-257 (348)
357 PRK09496 trkA potassium transp 85.2 7.7 0.00017 34.8 9.4 95 87-206 2-99 (453)
358 PF03686 UPF0146: Uncharacteri 85.0 2.3 5E-05 31.0 4.7 91 84-207 13-103 (127)
359 TIGR02825 B4_12hDH leukotriene 85.0 7.4 0.00016 33.1 8.8 98 81-205 135-236 (325)
360 PLN02827 Alcohol dehydrogenase 84.9 6.5 0.00014 34.5 8.6 44 82-125 191-236 (378)
361 PLN02586 probable cinnamyl alc 84.9 5.6 0.00012 34.6 8.1 94 83-205 182-277 (360)
362 cd08234 threonine_DH_like L-th 84.8 6.9 0.00015 33.3 8.6 99 81-205 156-256 (334)
363 KOG1201 Hydroxysteroid 17-beta 84.6 4.2 9.2E-05 34.2 6.8 81 84-177 37-126 (300)
364 COG1086 Predicted nucleoside-d 84.6 4.2 9.2E-05 37.4 7.2 94 84-186 249-346 (588)
365 PLN02494 adenosylhomocysteinas 84.1 3.6 7.9E-05 37.2 6.6 88 84-206 253-341 (477)
366 COG1062 AdhC Zn-dependent alco 83.7 11 0.00024 32.5 8.9 53 76-128 177-231 (366)
367 COG1255 Uncharacterized protei 83.4 7.2 0.00016 27.9 6.5 88 85-205 14-101 (129)
368 cd08255 2-desacetyl-2-hydroxye 83.3 9.2 0.0002 31.5 8.5 94 81-205 94-189 (277)
369 COG0569 TrkA K+ transport syst 83.1 3.8 8.3E-05 33.2 5.9 70 87-172 2-73 (225)
370 COG1748 LYS9 Saccharopine dehy 83.0 3.8 8.2E-05 36.1 6.1 72 86-173 2-76 (389)
371 PRK09496 trkA potassium transp 83.0 12 0.00026 33.6 9.7 72 84-172 230-304 (453)
372 cd08294 leukotriene_B4_DH_like 82.6 7.7 0.00017 32.8 8.0 95 82-204 141-239 (329)
373 TIGR00936 ahcY adenosylhomocys 82.4 6.1 0.00013 35.1 7.3 41 83-123 193-234 (406)
374 PF05206 TRM13: Methyltransfer 82.4 11 0.00024 31.3 8.4 110 83-206 17-140 (259)
375 PF02086 MethyltransfD12: D12 82.4 2.2 4.8E-05 35.1 4.4 57 68-128 7-63 (260)
376 cd08242 MDR_like Medium chain 82.2 16 0.00034 30.8 9.8 91 81-204 152-243 (319)
377 PRK05476 S-adenosyl-L-homocyst 81.9 4.9 0.00011 36.0 6.5 86 84-205 211-298 (425)
378 TIGR00518 alaDH alanine dehydr 81.4 2.7 5.8E-05 36.9 4.7 44 84-127 166-210 (370)
379 cd05213 NAD_bind_Glutamyl_tRNA 81.0 8.4 0.00018 32.9 7.5 101 84-213 177-279 (311)
380 cd08300 alcohol_DH_class_III c 80.7 14 0.00029 32.2 9.0 45 81-125 183-229 (368)
381 KOG0022 Alcohol dehydrogenase, 80.6 3.4 7.4E-05 35.2 4.8 49 80-128 188-238 (375)
382 PRK07417 arogenate dehydrogena 80.4 18 0.00039 30.2 9.3 88 87-207 2-91 (279)
383 KOG2912 Predicted DNA methylas 80.4 5 0.00011 34.2 5.7 97 68-174 84-187 (419)
384 cd05285 sorbitol_DH Sorbitol d 79.9 17 0.00036 31.2 9.2 101 79-205 157-264 (343)
385 cd05278 FDH_like Formaldehyde 79.5 17 0.00037 31.0 9.1 98 82-205 165-266 (347)
386 PF07279 DUF1442: Protein of u 79.3 31 0.00068 27.7 9.8 101 83-204 40-146 (218)
387 TIGR02819 fdhA_non_GSH formald 79.3 14 0.00031 32.6 8.7 107 81-204 182-297 (393)
388 cd08285 NADP_ADH NADP(H)-depen 78.9 21 0.00046 30.6 9.6 98 81-204 163-264 (351)
389 cd08278 benzyl_alcohol_DH Benz 78.7 17 0.00036 31.6 8.9 97 82-205 184-284 (365)
390 COG5379 BtaA S-adenosylmethion 78.6 6.2 0.00013 33.3 5.6 46 82-128 61-106 (414)
391 PRK07502 cyclohexadienyl dehyd 78.6 23 0.0005 30.0 9.5 88 86-203 7-97 (307)
392 PRK12939 short chain dehydroge 77.8 21 0.00044 28.8 8.7 81 84-175 6-94 (250)
393 PRK07533 enoyl-(acyl carrier p 77.8 37 0.0008 27.7 10.5 111 84-205 9-147 (258)
394 cd08261 Zn_ADH7 Alcohol dehydr 77.7 20 0.00042 30.6 8.9 99 81-205 156-257 (337)
395 PRK06701 short chain dehydroge 77.4 24 0.00053 29.5 9.3 111 84-205 45-180 (290)
396 PRK08265 short chain dehydroge 77.3 26 0.00055 28.7 9.2 78 84-175 5-90 (261)
397 cd08236 sugar_DH NAD(P)-depend 77.3 19 0.0004 30.8 8.7 99 81-205 156-257 (343)
398 cd08293 PTGR2 Prostaglandin re 76.5 17 0.00038 31.0 8.3 92 86-204 156-252 (345)
399 cd08231 MDR_TM0436_like Hypoth 76.5 27 0.00059 30.1 9.6 42 84-125 177-220 (361)
400 cd08238 sorbose_phosphate_red 76.4 11 0.00024 33.5 7.1 45 82-126 173-222 (410)
401 cd08301 alcohol_DH_plants Plan 75.9 18 0.00038 31.5 8.3 45 81-125 184-230 (369)
402 cd08295 double_bond_reductase_ 75.7 20 0.00043 30.6 8.5 96 81-204 148-249 (338)
403 PRK08324 short chain dehydroge 75.6 14 0.0003 35.3 8.0 110 84-205 421-556 (681)
404 PLN02514 cinnamyl-alcohol dehy 75.4 21 0.00046 30.9 8.6 44 83-126 179-223 (357)
405 cd08233 butanediol_DH_like (2R 75.2 25 0.00055 30.1 9.0 101 81-205 169-271 (351)
406 PRK05786 fabG 3-ketoacyl-(acyl 75.1 40 0.00087 26.8 10.6 111 84-206 4-135 (238)
407 PLN02178 cinnamyl-alcohol dehy 75.1 16 0.00036 31.9 7.8 41 83-123 177-219 (375)
408 PF02719 Polysacc_synt_2: Poly 75.0 5.5 0.00012 33.7 4.5 81 94-178 6-90 (293)
409 PRK05225 ketol-acid reductoiso 75.0 5.2 0.00011 36.0 4.6 35 164-205 96-130 (487)
410 PF02153 PDH: Prephenate dehyd 74.9 17 0.00036 30.1 7.4 66 107-203 11-76 (258)
411 TIGR02356 adenyl_thiF thiazole 74.7 20 0.00043 28.5 7.5 33 84-116 20-54 (202)
412 cd08296 CAD_like Cinnamyl alco 74.5 18 0.00038 30.9 7.8 98 81-205 160-258 (333)
413 PRK07576 short chain dehydroge 74.4 24 0.00051 29.0 8.3 80 84-174 8-95 (264)
414 cd08298 CAD2 Cinnamyl alcohol 73.8 44 0.00096 28.2 10.1 91 81-205 164-255 (329)
415 PF06460 NSP13: Coronavirus NS 73.6 22 0.00048 29.5 7.4 102 81-209 58-172 (299)
416 KOG0821 Predicted ribosomal RN 73.4 12 0.00025 30.3 5.7 41 84-124 50-90 (326)
417 PRK05708 2-dehydropantoate 2-r 73.2 47 0.001 28.2 9.9 100 86-205 3-103 (305)
418 PF05050 Methyltransf_21: Meth 73.1 5.9 0.00013 29.7 4.1 37 90-126 1-42 (167)
419 PRK07066 3-hydroxybutyryl-CoA 72.9 12 0.00026 32.2 6.2 103 86-204 8-117 (321)
420 PTZ00075 Adenosylhomocysteinas 72.6 11 0.00024 34.1 6.1 98 84-217 253-353 (476)
421 PF01555 N6_N4_Mtase: DNA meth 72.3 4.2 9.2E-05 32.4 3.2 51 183-233 33-87 (231)
422 PRK05867 short chain dehydroge 71.9 19 0.00041 29.2 7.1 81 84-175 8-96 (253)
423 PRK07806 short chain dehydroge 71.6 38 0.00082 27.2 8.8 111 84-205 5-133 (248)
424 COG0287 TyrA Prephenate dehydr 71.5 23 0.00049 29.8 7.4 89 86-203 4-95 (279)
425 PRK06035 3-hydroxyacyl-CoA deh 71.1 38 0.00082 28.4 8.9 41 86-127 4-46 (291)
426 PRK08267 short chain dehydroge 70.9 15 0.00033 29.9 6.4 77 86-175 2-87 (260)
427 PRK06940 short chain dehydroge 70.3 39 0.00085 28.0 8.7 78 87-176 4-87 (275)
428 COG0604 Qor NADPH:quinone redu 70.2 20 0.00044 30.8 7.1 99 82-205 140-240 (326)
429 PRK08306 dipicolinate synthase 70.0 18 0.0004 30.6 6.7 41 84-124 151-192 (296)
430 cd08265 Zn_ADH3 Alcohol dehydr 70.0 25 0.00055 30.7 7.9 102 81-205 200-306 (384)
431 PRK08293 3-hydroxybutyryl-CoA 69.6 27 0.00059 29.3 7.7 104 86-203 4-117 (287)
432 PF02826 2-Hacid_dh_C: D-isome 69.5 3.7 8E-05 31.9 2.2 104 84-218 35-143 (178)
433 PRK10083 putative oxidoreducta 69.1 29 0.00063 29.5 7.9 46 81-126 157-205 (339)
434 PF08484 Methyltransf_14: C-me 69.1 36 0.00077 26.0 7.5 93 83-207 66-160 (160)
435 cd05283 CAD1 Cinnamyl alcohol 69.0 45 0.00098 28.4 9.1 44 82-125 167-211 (337)
436 KOG0023 Alcohol dehydrogenase, 68.7 20 0.00043 30.8 6.3 48 81-128 178-226 (360)
437 PRK07819 3-hydroxybutyryl-CoA 68.6 30 0.00066 29.1 7.7 105 86-206 6-121 (286)
438 PLN02256 arogenate dehydrogena 68.5 37 0.0008 28.9 8.2 96 79-208 30-128 (304)
439 TIGR02441 fa_ox_alpha_mit fatt 68.2 28 0.00061 33.7 8.2 108 86-208 336-452 (737)
440 PRK08644 thiamine biosynthesis 68.1 58 0.0013 26.1 8.9 33 84-116 27-61 (212)
441 PRK09260 3-hydroxybutyryl-CoA 67.7 47 0.001 27.8 8.7 105 87-206 3-117 (288)
442 cd01487 E1_ThiF_like E1_ThiF_l 67.3 46 0.001 25.7 8.0 31 87-117 1-33 (174)
443 cd05281 TDH Threonine dehydrog 67.2 38 0.00083 28.9 8.3 97 83-205 162-261 (341)
444 KOG1209 1-Acyl dihydroxyaceton 67.1 47 0.001 27.0 7.8 33 84-116 6-41 (289)
445 PF02558 ApbA: Ketopantoate re 67.1 9.8 0.00021 28.3 4.1 99 88-206 1-101 (151)
446 cd08240 6_hydroxyhexanoate_dh_ 66.7 37 0.00081 29.1 8.1 94 84-204 175-272 (350)
447 PRK12475 thiamine/molybdopteri 66.5 15 0.00033 31.8 5.5 34 84-117 23-58 (338)
448 PRK07097 gluconate 5-dehydroge 66.3 27 0.00058 28.6 6.9 81 84-175 9-97 (265)
449 PRK07063 short chain dehydroge 66.1 34 0.00075 27.8 7.5 83 84-175 6-96 (260)
450 PRK12742 oxidoreductase; Provi 65.8 66 0.0014 25.5 10.3 106 84-205 5-130 (237)
451 cd01065 NAD_bind_Shikimate_DH 65.7 30 0.00064 25.7 6.5 45 83-127 17-63 (155)
452 PRK06128 oxidoreductase; Provi 65.4 52 0.0011 27.6 8.6 111 84-205 54-190 (300)
453 cd05279 Zn_ADH1 Liver alcohol 65.2 45 0.00098 28.9 8.4 45 81-125 180-226 (365)
454 PRK06522 2-dehydropantoate 2-r 64.5 49 0.0011 27.7 8.3 97 87-205 2-99 (304)
455 PRK12480 D-lactate dehydrogena 64.5 70 0.0015 27.6 9.2 101 84-218 145-250 (330)
456 PRK05876 short chain dehydroge 64.1 31 0.00067 28.6 6.9 81 84-175 5-93 (275)
457 PRK05808 3-hydroxybutyryl-CoA 64.1 43 0.00094 27.9 7.8 104 87-206 5-118 (282)
458 PF03807 F420_oxidored: NADP o 64.1 12 0.00025 25.4 3.7 83 88-203 2-91 (96)
459 cd08263 Zn_ADH10 Alcohol dehyd 63.8 52 0.0011 28.5 8.5 97 83-205 186-286 (367)
460 PRK08217 fabG 3-ketoacyl-(acyl 63.8 23 0.00051 28.4 6.0 80 84-174 4-91 (253)
461 PRK07890 short chain dehydroge 63.2 26 0.00056 28.4 6.2 81 84-175 4-92 (258)
462 cd08270 MDR4 Medium chain dehy 63.2 63 0.0014 26.8 8.8 88 84-205 132-221 (305)
463 TIGR02354 thiF_fam2 thiamine b 63.0 46 0.001 26.4 7.3 33 84-116 20-54 (200)
464 cd08286 FDH_like_ADH2 formalde 63.0 60 0.0013 27.6 8.7 100 82-205 164-265 (345)
465 TIGR00692 tdh L-threonine 3-de 62.6 72 0.0016 27.2 9.1 97 83-205 160-260 (340)
466 COG5379 BtaA S-adenosylmethion 62.1 21 0.00046 30.2 5.2 59 143-206 308-366 (414)
467 PRK11730 fadB multifunctional 61.7 56 0.0012 31.6 8.8 107 86-207 314-429 (715)
468 PLN02545 3-hydroxybutyryl-CoA 61.3 86 0.0019 26.3 9.2 104 86-204 5-117 (295)
469 PRK12921 2-dehydropantoate 2-r 60.9 44 0.00095 28.1 7.4 34 164-204 67-100 (305)
470 COG1087 GalE UDP-glucose 4-epi 60.8 14 0.00031 31.4 4.1 42 144-185 46-87 (329)
471 PRK09422 ethanol-active dehydr 60.7 74 0.0016 27.0 8.8 45 81-125 159-205 (338)
472 PRK07530 3-hydroxybutyryl-CoA 60.7 81 0.0018 26.4 8.9 105 86-206 5-119 (292)
473 PRK12491 pyrroline-5-carboxyla 60.2 65 0.0014 26.9 8.1 89 87-207 4-97 (272)
474 PRK07478 short chain dehydroge 59.8 44 0.00096 27.0 7.0 81 84-175 5-93 (254)
475 PRK07688 thiamine/molybdopteri 59.5 25 0.00053 30.5 5.6 33 84-116 23-57 (339)
476 cd08241 QOR1 Quinone oxidoredu 59.5 66 0.0014 26.6 8.2 44 82-125 137-182 (323)
477 cd08260 Zn_ADH6 Alcohol dehydr 59.3 74 0.0016 27.1 8.6 44 82-125 163-207 (345)
478 PRK07904 short chain dehydroge 59.2 42 0.00091 27.4 6.8 82 83-175 6-97 (253)
479 TIGR01035 hemA glutamyl-tRNA r 59.0 76 0.0017 28.4 8.8 39 83-121 178-218 (417)
480 PRK05872 short chain dehydroge 58.8 39 0.00084 28.3 6.7 80 84-175 8-95 (296)
481 cd08279 Zn_ADH_class_III Class 58.6 79 0.0017 27.3 8.7 98 82-205 180-281 (363)
482 PRK08213 gluconate 5-dehydroge 58.5 51 0.0011 26.7 7.2 81 84-175 11-99 (259)
483 PF07101 DUF1363: Protein of u 58.5 4 8.6E-05 27.9 0.4 17 88-104 6-22 (124)
484 cd00757 ThiF_MoeB_HesA_family 58.4 53 0.0011 26.5 7.1 34 84-117 20-55 (228)
485 TIGR02818 adh_III_F_hyde S-(hy 58.4 23 0.0005 30.8 5.4 46 81-126 182-229 (368)
486 PLN02702 L-idonate 5-dehydroge 58.3 94 0.002 26.8 9.2 45 81-125 178-224 (364)
487 PRK05866 short chain dehydroge 58.2 39 0.00084 28.4 6.5 81 84-175 39-127 (293)
488 TIGR03201 dearomat_had 6-hydro 58.0 21 0.00046 30.7 5.0 45 81-125 163-208 (349)
489 PRK06196 oxidoreductase; Provi 57.9 47 0.001 28.1 7.1 77 84-175 25-109 (315)
490 PRK00045 hemA glutamyl-tRNA re 57.6 50 0.0011 29.6 7.4 39 83-121 180-220 (423)
491 PRK11154 fadJ multifunctional 57.5 78 0.0017 30.6 9.0 107 86-207 310-426 (708)
492 PRK06139 short chain dehydroge 57.4 38 0.00082 29.1 6.4 81 84-175 6-94 (330)
493 PRK06194 hypothetical protein; 57.0 35 0.00077 28.2 6.1 81 84-175 5-93 (287)
494 cd00755 YgdL_like Family of ac 57.0 72 0.0016 26.0 7.6 34 84-117 10-45 (231)
495 PRK05854 short chain dehydroge 57.0 57 0.0012 27.7 7.4 83 84-175 13-103 (313)
496 PRK06484 short chain dehydroge 56.9 94 0.002 28.4 9.3 108 84-205 268-399 (520)
497 PRK06484 short chain dehydroge 56.7 1E+02 0.0022 28.2 9.5 78 84-175 4-89 (520)
498 KOG2360 Proliferation-associat 56.5 16 0.00036 32.0 3.9 65 81-154 210-276 (413)
499 cd05284 arabinose_DH_like D-ar 56.0 85 0.0018 26.6 8.4 98 82-205 165-265 (340)
500 cd08291 ETR_like_1 2-enoyl thi 55.9 72 0.0016 27.0 7.9 42 84-125 142-186 (324)
No 1
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=234.55 Aligned_cols=222 Identities=54% Similarity=0.926 Sum_probs=192.5
Q ss_pred cchhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEE
Q 024797 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI 113 (262)
Q Consensus 34 ~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gv 113 (262)
..+..+-+.++++|++....+...+..++++.++++++|++.+|......++..++|+|||-|..++.+-+++.+.++|+
T Consensus 67 ~~~~~~~~~Va~HYN~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igi 146 (389)
T KOG1975|consen 67 EANESKSSEVAEHYNERTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGI 146 (389)
T ss_pred hhccchhHHHHHHHHHHHHHhHhhhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEee
Confidence 34556788999999999999999999999999999999999999999999999999999999999999988888899999
Q ss_pred eCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc-CCCCCeeEEEEcccccccCCCHHHHHHHHHHH
Q 024797 114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL-ADDAPFDICSCQFAMHYSWSTEARARRALANV 192 (262)
Q Consensus 114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~ 192 (262)
||++..+++|+++....-. ...+....+.|+++|.....+.+.. +++.+||+|.|.+++||.|.+.+..+.+|+++
T Consensus 147 DIAevSI~qa~~RYrdm~~---r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nv 223 (389)
T KOG1975|consen 147 DIAEVSINQARKRYRDMKN---RFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNV 223 (389)
T ss_pred ehhhccHHHHHHHHHHHHh---hhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHH
Confidence 9999999999999873211 1124556789999998765554433 23445999999999999999999999999999
Q ss_pred HhccCCCcEEEEEeCChHHHHHHHhhhcCCccccceEEEEcCchhhhccCCCCCCcceeEEEEecCCC
Q 024797 193 SALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEVPF 260 (262)
Q Consensus 193 ~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~g~~y~f~l~~~~ 260 (262)
.+.|+|||++|.++||.+.++++++..+...|||.+|+++|...+ .+.+. -.+||.+|+|+|++.+
T Consensus 224 a~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~-~k~~~-~p~fG~kY~F~LedaV 289 (389)
T KOG1975|consen 224 AKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEF-QKEFD-VPPFGAKYRFHLEDAV 289 (389)
T ss_pred HhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeec-ccccC-CCCccceEEEEccccc
Confidence 999999999999999999999999998888999999999999444 44444 5789999999999864
No 2
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.97 E-value=1e-29 Score=215.42 Aligned_cols=218 Identities=50% Similarity=0.873 Sum_probs=155.1
Q ss_pred hHHHHHHHHHhhhhcccc--HhhhhcCccccchhHHHHHHHHHHHHhcc------CCCeEEEecCCCCcchHHHHhcCCC
Q 024797 37 KVFARKVADHYSRRTNQT--LEEREASPIIHLKKLNNWIKSVLVQLYAR------RGDVVLDLACGKGGDLIKWDKAKIG 108 (262)
Q Consensus 37 ~~~~~~~a~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~vLDiGcG~G~~~~~l~~~~~~ 108 (262)
...-+.++++|+...... ...+..++++.++.++.|++.+|...... ++.+|||+|||-|..+..|...+..
T Consensus 7 ~~~~~~v~~hYn~~~~~~~~~~~R~~S~i~~lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~ 86 (331)
T PF03291_consen 7 SDVTDVVAEHYNQRPEVGIDLKERQESPIFHLRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIK 86 (331)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-S
T ss_pred ccHHHHHHHHHhccccccchhhhhhhChhHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCC
Confidence 345567899998877666 77888999999999999999999988877 8899999999999999999888888
Q ss_pred eEEEEeCChhHHHHHHHHhccCcccc-ccccCCCCCeEEEeCcccccccccccCCC-CCeeEEEEcccccccCCCHHHHH
Q 024797 109 YYVGIDIAEGSIEDCRTRYNGDADHH-QRRKKFSFPARLICGDCYEVHLDKVLADD-APFDICSCQFAMHYSWSTEARAR 186 (262)
Q Consensus 109 ~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~-~~fD~V~~~~~l~~~~~~~~~~~ 186 (262)
.++|+|+|...|+.|+++..+..... .+.........++++|.....+.....+. ..||+|.|.+++||++.+.+..+
T Consensus 87 ~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar 166 (331)
T PF03291_consen 87 HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKAR 166 (331)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHH
Confidence 99999999999999999994322111 11122345678899998765554433233 69999999999999999999999
Q ss_pred HHHHHHHhccCCCcEEEEEeCChHHHHHHHhh----hcCCccccceEEEEcCchhhhccCCCCCCcceeEEEEecCCC
Q 024797 187 RALANVSALLRPGGTFIGTMPDANVIIKKLRE----VEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEVPF 260 (262)
Q Consensus 187 ~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~g~~y~f~l~~~~ 260 (262)
.+|.++.+.|+|||++|.++||.+.+..++.+ .....+++.+|.++|+.+ ....+||.+|.|+|++.+
T Consensus 167 ~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~------~~~~~fG~~Y~F~L~~~v 238 (331)
T PF03291_consen 167 QFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD------DFFPPFGAKYDFYLEDAV 238 (331)
T ss_dssp HHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC------SS--CTTEEEEEEETTCS
T ss_pred HHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc------CCCCCCCcEEEEEecCcC
Confidence 99999999999999999999999999888877 457789999999999988 233569999999999864
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.92 E-value=8.7e-25 Score=175.79 Aligned_cols=144 Identities=26% Similarity=0.467 Sum_probs=123.7
Q ss_pred cchhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEE
Q 024797 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVG 112 (262)
Q Consensus 34 ~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g 112 (262)
...+..|++++..||. .+. +.++.....|.+.+.......+|.+|||+|||||..+..+++. +.++|+|
T Consensus 11 ~~v~~vF~~ia~~YD~-~n~---------~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~ 80 (238)
T COG2226 11 EKVQKVFDKVAKKYDL-MND---------LMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVG 80 (238)
T ss_pred HHHHHHHHhhHHHHHh-hcc---------cccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEE
Confidence 3455799999999984 333 3347888899999998887778999999999999999988763 5678999
Q ss_pred EeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHH
Q 024797 113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV 192 (262)
Q Consensus 113 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~ 192 (262)
+|+|+.|++.|+++..+.+. .+++|+++|+.++|+ ++++||+|++.++++++ .+++++|+++
T Consensus 81 ~D~s~~ML~~a~~k~~~~~~---------~~i~fv~~dAe~LPf-----~D~sFD~vt~~fglrnv----~d~~~aL~E~ 142 (238)
T COG2226 81 LDISESMLEVAREKLKKKGV---------QNVEFVVGDAENLPF-----PDNSFDAVTISFGLRNV----TDIDKALKEM 142 (238)
T ss_pred EECCHHHHHHHHHHhhccCc---------cceEEEEechhhCCC-----CCCccCEEEeeehhhcC----CCHHHHHHHH
Confidence 99999999999999874322 239999999999998 89999999999999988 7899999999
Q ss_pred HhccCCCcEEEEE
Q 024797 193 SALLRPGGTFIGT 205 (262)
Q Consensus 193 ~~~L~~gG~li~~ 205 (262)
+|+|||||++++.
T Consensus 143 ~RVlKpgG~~~vl 155 (238)
T COG2226 143 YRVLKPGGRLLVL 155 (238)
T ss_pred HHhhcCCeEEEEE
Confidence 9999999998764
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.90 E-value=6.2e-24 Score=172.51 Aligned_cols=143 Identities=27% Similarity=0.505 Sum_probs=85.0
Q ss_pred chhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEE
Q 024797 35 STKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVG 112 (262)
Q Consensus 35 ~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g 112 (262)
..+..|+.++..||. .+... ++.....|.+.++......++.+|||+|||+|..+..+++. +.++|+|
T Consensus 8 ~v~~~Fd~ia~~YD~-~n~~l---------s~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~ 77 (233)
T PF01209_consen 8 YVRKMFDRIAPRYDR-MNDLL---------SFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVG 77 (233)
T ss_dssp ---------------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEE
T ss_pred HHHHHHHHHHHHhCC-Ccccc---------CCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEE
Confidence 345699999999984 43332 25566677777777777788999999999999988888763 4568999
Q ss_pred EeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHH
Q 024797 113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV 192 (262)
Q Consensus 113 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~ 192 (262)
+|+|+.|++.|+++....+ ..+++++++|++++|+ ++++||+|++.++++++ .++.+.++++
T Consensus 78 vD~s~~ML~~a~~k~~~~~---------~~~i~~v~~da~~lp~-----~d~sfD~v~~~fglrn~----~d~~~~l~E~ 139 (233)
T PF01209_consen 78 VDISPGMLEVARKKLKREG---------LQNIEFVQGDAEDLPF-----PDNSFDAVTCSFGLRNF----PDRERALREM 139 (233)
T ss_dssp EES-HHHHHHHHHHHHHTT-----------SEEEEE-BTTB--S------TT-EEEEEEES-GGG-----SSHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHhhC---------CCCeeEEEcCHHHhcC-----CCCceeEEEHHhhHHhh----CCHHHHHHHH
Confidence 9999999999999987422 2369999999999998 78999999999999987 6688899999
Q ss_pred HhccCCCcEEEEE
Q 024797 193 SALLRPGGTFIGT 205 (262)
Q Consensus 193 ~~~L~~gG~li~~ 205 (262)
+|+|||||.+++.
T Consensus 140 ~RVLkPGG~l~il 152 (233)
T PF01209_consen 140 YRVLKPGGRLVIL 152 (233)
T ss_dssp HHHEEEEEEEEEE
T ss_pred HHHcCCCeEEEEe
Confidence 9999999998754
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.86 E-value=8.3e-21 Score=157.46 Aligned_cols=149 Identities=21% Similarity=0.318 Sum_probs=112.7
Q ss_pred cchhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEE
Q 024797 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYV 111 (262)
Q Consensus 34 ~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~ 111 (262)
...++.|+.++..|+.. +.... +.....|.+..+......++.+|||+|||+|.++..+++. +.++|+
T Consensus 33 ~~v~~~f~~~A~~YD~~-~~~~s---------~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~ 102 (261)
T PLN02233 33 NERQALFNRIAPVYDNL-NDLLS---------LGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVM 102 (261)
T ss_pred HHHHHHHHHhhhHHHHh-hhhhc---------CChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEE
Confidence 44667999999999842 22110 2223345554555555667889999999999988877653 345899
Q ss_pred EEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHH
Q 024797 112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191 (262)
Q Consensus 112 gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~ 191 (262)
|+|+|++|++.|+++.... ......+++++++|+.++++ ++++||+|++.++++|+ +++..++++
T Consensus 103 gvD~S~~ml~~A~~r~~~~------~~~~~~~i~~~~~d~~~lp~-----~~~sfD~V~~~~~l~~~----~d~~~~l~e 167 (261)
T PLN02233 103 GLDFSSEQLAVAASRQELK------AKSCYKNIEWIEGDATDLPF-----DDCYFDAITMGYGLRNV----VDRLKAMQE 167 (261)
T ss_pred EEECCHHHHHHHHHHhhhh------hhccCCCeEEEEcccccCCC-----CCCCEeEEEEecccccC----CCHHHHHHH
Confidence 9999999999998765310 01123468999999999887 68899999999999988 578899999
Q ss_pred HHhccCCCcEEEEEeC
Q 024797 192 VSALLRPGGTFIGTMP 207 (262)
Q Consensus 192 ~~~~L~~gG~li~~~~ 207 (262)
++|+|||||.+++...
T Consensus 168 i~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 168 MYRVLKPGSRVSILDF 183 (261)
T ss_pred HHHHcCcCcEEEEEEC
Confidence 9999999999988754
No 6
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.85 E-value=5.1e-20 Score=155.89 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=91.9
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
++.+|||||||+|.++..+++. ...|+|+|+|++|++.|+++.... ....++.++++|+.+++. ++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~--------~~~~~i~~~~~dae~l~~-----~~ 196 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMD--------PVTSTIEYLCTTAEKLAD-----EG 196 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhc--------CcccceeEEecCHHHhhh-----cc
Confidence 5679999999999988887654 348999999999999999875421 123468999999988765 56
Q ss_pred CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (262)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~ 210 (262)
++||+|++..+++|+ .++..+++++.++|||||.+++++.+..
T Consensus 197 ~~FD~Vi~~~vLeHv----~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 197 RKFDAVLSLEVIEHV----ANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred CCCCEEEEhhHHHhc----CCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 899999999999998 5678999999999999999999988764
No 7
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.83 E-value=1.2e-19 Score=143.82 Aligned_cols=144 Identities=23% Similarity=0.315 Sum_probs=117.7
Q ss_pred hHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-C------CCe
Q 024797 37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-K------IGY 109 (262)
Q Consensus 37 ~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~------~~~ 109 (262)
...|+.+|..|+ ..+.... ...++-|-...+..+.+.++.++||++||+|-.+..+++. . ..+
T Consensus 63 ~~vF~~vA~~YD-~mND~mS---------lGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~ 132 (296)
T KOG1540|consen 63 HHVFESVAKKYD-IMNDAMS---------LGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESK 132 (296)
T ss_pred HHHHHHHHHHHH-HHHHHhh---------cchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCce
Confidence 358999999997 3444322 5666778777777888888999999999999888888763 2 257
Q ss_pred EEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHH
Q 024797 110 YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRAL 189 (262)
Q Consensus 110 v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l 189 (262)
|+++|+|++|+..++++..+.+... ...+.|+++|++++|+ ++++||..++.+.+.++ .++++++
T Consensus 133 V~v~Dinp~mL~vgkqRa~~~~l~~------~~~~~w~~~dAE~LpF-----dd~s~D~yTiafGIRN~----th~~k~l 197 (296)
T KOG1540|consen 133 VTVLDINPHMLAVGKQRAKKRPLKA------SSRVEWVEGDAEDLPF-----DDDSFDAYTIAFGIRNV----THIQKAL 197 (296)
T ss_pred EEEEeCCHHHHHHHHHHHhhcCCCc------CCceEEEeCCcccCCC-----CCCcceeEEEecceecC----CCHHHHH
Confidence 9999999999999999986433221 2348999999999998 89999999999999977 7899999
Q ss_pred HHHHhccCCCcEEEEE
Q 024797 190 ANVSALLRPGGTFIGT 205 (262)
Q Consensus 190 ~~~~~~L~~gG~li~~ 205 (262)
++++|+|||||++.+-
T Consensus 198 ~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 198 REAYRVLKPGGRFSCL 213 (296)
T ss_pred HHHHHhcCCCcEEEEE
Confidence 9999999999998653
No 8
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.82 E-value=3.2e-20 Score=146.97 Aligned_cols=152 Identities=16% Similarity=0.205 Sum_probs=112.0
Q ss_pred cchhHHHHHHHHHhhhhccccHhhhhcCccccchhH-HHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEE
Q 024797 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKL-NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVG 112 (262)
Q Consensus 34 ~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g 112 (262)
....+.|+.++..|++.......-.. +... ..|++........-++.+|||+|||.|.++..+++.+ ..|+|
T Consensus 14 ~~e~~~F~~la~~wwd~~g~f~~LH~------~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~G-a~Vtg 86 (243)
T COG2227 14 YKELDKFEALASRWWDPEGEFKPLHK------INPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLG-ASVTG 86 (243)
T ss_pred HHHHHHHHHHHhhhcCCCCceeeeee------eccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCC-CeeEE
Confidence 34557889999999753322111000 1111 1233333221111478999999999999999998766 58999
Q ss_pred EeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHH
Q 024797 113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV 192 (262)
Q Consensus 113 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~ 192 (262)
+|+++++++.|+.+..+. +..+++.+..++++.. ..++||+|+|.-+++|+ +++..+++.+
T Consensus 87 iD~se~~I~~Ak~ha~e~----------gv~i~y~~~~~edl~~-----~~~~FDvV~cmEVlEHv----~dp~~~~~~c 147 (243)
T COG2227 87 IDASEKPIEVAKLHALES----------GVNIDYRQATVEDLAS-----AGGQFDVVTCMEVLEHV----PDPESFLRAC 147 (243)
T ss_pred ecCChHHHHHHHHhhhhc----------cccccchhhhHHHHHh-----cCCCccEEEEhhHHHcc----CCHHHHHHHH
Confidence 999999999999987743 2336678888777764 44899999999999999 7788899999
Q ss_pred HhccCCCcEEEEEeCChHH
Q 024797 193 SALLRPGGTFIGTMPDANV 211 (262)
Q Consensus 193 ~~~L~~gG~li~~~~~~~~ 211 (262)
.+.+||||.++++++|...
T Consensus 148 ~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 148 AKLVKPGGILFLSTINRTL 166 (243)
T ss_pred HHHcCCCcEEEEeccccCH
Confidence 9999999999999998653
No 9
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.82 E-value=1e-19 Score=127.52 Aligned_cols=95 Identities=27% Similarity=0.439 Sum_probs=82.8
Q ss_pred EEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeE
Q 024797 89 LDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDI 168 (262)
Q Consensus 89 LDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 168 (262)
||+|||+|..+..+++.+...|+|+|+|+.+++.++++.. ..++.+.++|+.++++ ++++||+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~------------~~~~~~~~~d~~~l~~-----~~~sfD~ 63 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK------------NEGVSFRQGDAEDLPF-----PDNSFDV 63 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT------------TSTEEEEESBTTSSSS------TT-EEE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc------------ccCchheeehHHhCcc-----ccccccc
Confidence 8999999999999887756789999999999999999876 3446699999999988 7899999
Q ss_pred EEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797 169 CSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (262)
Q Consensus 169 V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~ 204 (262)
|++..+++|+ +++.++++++.|+|||||+++|
T Consensus 64 v~~~~~~~~~----~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 64 VFSNSVLHHL----EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEESHGGGS----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccceeec----cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999999998 8899999999999999999986
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.82 E-value=2.6e-19 Score=146.32 Aligned_cols=144 Identities=21% Similarity=0.416 Sum_probs=116.0
Q ss_pred chhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEE
Q 024797 35 STKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVG 112 (262)
Q Consensus 35 ~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g 112 (262)
....+|+.++..|+... .. .++.....|...++..+...++.+|||+|||+|..+..+++. +.++|+|
T Consensus 6 ~~~~~f~~~a~~yd~~~-~~---------~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~g 75 (231)
T TIGR02752 6 RVHKVFEKIYKKYDRMN-SV---------ISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIG 75 (231)
T ss_pred HHHHHHHHhhhHHhHHH-HH---------hcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEE
Confidence 35679999999998532 21 224567778887888777778899999999999988888764 3458999
Q ss_pred EeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHH
Q 024797 113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV 192 (262)
Q Consensus 113 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~ 192 (262)
+|+|+.+++.|+++....+ ..+++++++|+..+++ ++++||+|++.++++++ ++..++++++
T Consensus 76 vD~s~~~~~~a~~~~~~~~---------~~~v~~~~~d~~~~~~-----~~~~fD~V~~~~~l~~~----~~~~~~l~~~ 137 (231)
T TIGR02752 76 LDFSENMLSVGRQKVKDAG---------LHNVELVHGNAMELPF-----DDNSFDYVTIGFGLRNV----PDYMQVLREM 137 (231)
T ss_pred EECCHHHHHHHHHHHHhcC---------CCceEEEEechhcCCC-----CCCCccEEEEecccccC----CCHHHHHHHH
Confidence 9999999999998876321 2358999999988765 57899999999999887 5567899999
Q ss_pred HhccCCCcEEEEEe
Q 024797 193 SALLRPGGTFIGTM 206 (262)
Q Consensus 193 ~~~L~~gG~li~~~ 206 (262)
.++|+|||.+++..
T Consensus 138 ~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 138 YRVVKPGGKVVCLE 151 (231)
T ss_pred HHHcCcCeEEEEEE
Confidence 99999999998754
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.82 E-value=6.1e-19 Score=151.65 Aligned_cols=118 Identities=17% Similarity=0.229 Sum_probs=97.1
Q ss_pred HHHHHHHHHhc-----cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEE
Q 024797 72 WIKSVLVQLYA-----RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL 146 (262)
Q Consensus 72 ~~~~~l~~~~~-----~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~ 146 (262)
.+..++..... .++.+|||+|||+|.++..+++....+|+|+|+|+.|++.++++.... +...++.+
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~--------g~~~~v~~ 172 (340)
T PLN02244 101 MIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQ--------GLSDKVSF 172 (340)
T ss_pred HHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc--------CCCCceEE
Confidence 34445544444 567899999999999998887654558999999999999999876632 23456999
Q ss_pred EeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 147 ~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
+++|+.++++ ++++||+|++..+++|+ .+...+++++.++|||||.+++..
T Consensus 173 ~~~D~~~~~~-----~~~~FD~V~s~~~~~h~----~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 173 QVADALNQPF-----EDGQFDLVWSMESGEHM----PDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred EEcCcccCCC-----CCCCccEEEECCchhcc----CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999998877 67899999999999998 567899999999999999999865
No 12
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.81 E-value=2.9e-19 Score=129.44 Aligned_cols=109 Identities=29% Similarity=0.470 Sum_probs=88.8
Q ss_pred CCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc-cccccccccC
Q 024797 84 RGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVHLDKVLA 161 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~ 161 (262)
|+.+|||+|||+|.++..+++ .+..+++|+|+|+.|++.|+++..+ .....+++++++|+ ....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~i~~~~~d~~~~~~------ 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE--------EGLSDRITFVQGDAEFDPD------ 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH--------TTTTTTEEEEESCCHGGTT------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh--------cCCCCCeEEEECccccCcc------
Confidence 578999999999999999987 4666899999999999999999842 23467899999999 3333
Q ss_pred CCCCeeEEEEcc-cccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 162 DDAPFDICSCQF-AMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 162 ~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
..++||+|++.+ ++++++ ..++...+++++.+.|+|||+++++.+
T Consensus 67 ~~~~~D~v~~~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 67 FLEPFDLVICSGFTLHFLL-PLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp TSSCEEEEEECSGSGGGCC-HHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred cCCCCCEEEECCCcccccc-chhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 346799999999 555442 236789999999999999999999753
No 13
>PRK05785 hypothetical protein; Provisional
Probab=99.81 E-value=5.5e-19 Score=143.44 Aligned_cols=129 Identities=22% Similarity=0.337 Sum_probs=99.5
Q ss_pred chhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhc--cCCCeEEEecCCCCcchHHHHhcCCCeEEE
Q 024797 35 STKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYA--RRGDVVLDLACGKGGDLIKWDKAKIGYYVG 112 (262)
Q Consensus 35 ~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g 112 (262)
..++.|+.++..|+.. +... ++.....|.+.++..+.. .++.+|||+|||+|..+..+++....+|+|
T Consensus 10 ~v~~~f~~iA~~YD~~-n~~~---------s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~g 79 (226)
T PRK05785 10 ELQEAYNKIPKAYDRA-NRFI---------SFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVA 79 (226)
T ss_pred HHHHHHHhhhHHHHHh-hhhc---------cCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEE
Confidence 3557999999999853 2211 123344566655554432 357899999999999888876543458999
Q ss_pred EeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHH
Q 024797 113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV 192 (262)
Q Consensus 113 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~ 192 (262)
+|+|++|++.|+++. .++++|+..+|+ ++++||+|++.++++|+ .++.++++++
T Consensus 80 vD~S~~Ml~~a~~~~-----------------~~~~~d~~~lp~-----~d~sfD~v~~~~~l~~~----~d~~~~l~e~ 133 (226)
T PRK05785 80 LDYAENMLKMNLVAD-----------------DKVVGSFEALPF-----RDKSFDVVMSSFALHAS----DNIEKVIAEF 133 (226)
T ss_pred ECCCHHHHHHHHhcc-----------------ceEEechhhCCC-----CCCCEEEEEecChhhcc----CCHHHHHHHH
Confidence 999999999998642 247889988887 78999999999999987 6788999999
Q ss_pred HhccCCC
Q 024797 193 SALLRPG 199 (262)
Q Consensus 193 ~~~L~~g 199 (262)
+|+|||.
T Consensus 134 ~RvLkp~ 140 (226)
T PRK05785 134 TRVSRKQ 140 (226)
T ss_pred HHHhcCc
Confidence 9999995
No 14
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.80 E-value=5.9e-19 Score=146.25 Aligned_cols=149 Identities=20% Similarity=0.286 Sum_probs=110.2
Q ss_pred HHHHHHHHHhhhhccccHhhhhcCccccchhHHHH--HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeC
Q 024797 38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNW--IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDI 115 (262)
Q Consensus 38 ~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~ 115 (262)
..||.++++|.+........+ .+...-| +..++..+. .++.+|||+|||+|.++..+++.. .+|+|+|+
T Consensus 4 ~~fd~~a~~f~~~~y~~~~g~-------~r~~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~ 74 (255)
T PRK11036 4 RNFDDIAEKFSRNIYGTTKGQ-------IRQAILWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELG-HQVILCDL 74 (255)
T ss_pred CChhhHHHHHHHhccCCCccH-------HHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcC-CEEEEEEC
Confidence 468899999987554432211 1111111 233443333 456799999999999998887653 58999999
Q ss_pred ChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhc
Q 024797 116 AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195 (262)
Q Consensus 116 s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~ 195 (262)
|++|++.|+++.... +...+++++++|+.+++.. .+++||+|++..+++|+ .++..++.++.++
T Consensus 75 s~~~l~~a~~~~~~~--------g~~~~v~~~~~d~~~l~~~----~~~~fD~V~~~~vl~~~----~~~~~~l~~~~~~ 138 (255)
T PRK11036 75 SAEMIQRAKQAAEAK--------GVSDNMQFIHCAAQDIAQH----LETPVDLILFHAVLEWV----ADPKSVLQTLWSV 138 (255)
T ss_pred CHHHHHHHHHHHHhc--------CCccceEEEEcCHHHHhhh----cCCCCCEEEehhHHHhh----CCHHHHHHHHHHH
Confidence 999999999987632 2245689999998876421 46789999999999988 5667899999999
Q ss_pred cCCCcEEEEEeCChHH
Q 024797 196 LRPGGTFIGTMPDANV 211 (262)
Q Consensus 196 L~~gG~li~~~~~~~~ 211 (262)
|+|||.+++..++...
T Consensus 139 LkpgG~l~i~~~n~~~ 154 (255)
T PRK11036 139 LRPGGALSLMFYNANG 154 (255)
T ss_pred cCCCeEEEEEEECccH
Confidence 9999999988777653
No 15
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.79 E-value=2.6e-18 Score=142.14 Aligned_cols=137 Identities=21% Similarity=0.325 Sum_probs=104.5
Q ss_pred cchhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEE
Q 024797 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI 113 (262)
Q Consensus 34 ~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gv 113 (262)
...+..|+..+..|++... ........++..+...++.+|||+|||+|.++..+... ...++|+
T Consensus 7 ~~i~~~F~~aa~~Y~~~~~---------------~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~ 70 (251)
T PRK10258 7 QAIAAAFGRAAAHYEQHAE---------------LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTAL 70 (251)
T ss_pred HHHHHHHHHHHHhHhHHHH---------------HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEE
Confidence 3456788888888874211 11112233344443345679999999999888877654 4589999
Q ss_pred eCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHH
Q 024797 114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS 193 (262)
Q Consensus 114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~ 193 (262)
|+|+.|++.|+++.. ...++++|+..+++ ++++||+|+++.+++++ .++..++.++.
T Consensus 71 D~s~~~l~~a~~~~~--------------~~~~~~~d~~~~~~-----~~~~fD~V~s~~~l~~~----~d~~~~l~~~~ 127 (251)
T PRK10258 71 DLSPPMLAQARQKDA--------------ADHYLAGDIESLPL-----ATATFDLAWSNLAVQWC----GNLSTALRELY 127 (251)
T ss_pred ECCHHHHHHHHhhCC--------------CCCEEEcCcccCcC-----CCCcEEEEEECchhhhc----CCHHHHHHHHH
Confidence 999999999998754 24678999988776 67899999999999987 66889999999
Q ss_pred hccCCCcEEEEEeCCh
Q 024797 194 ALLRPGGTFIGTMPDA 209 (262)
Q Consensus 194 ~~L~~gG~li~~~~~~ 209 (262)
++|+|||.++++++..
T Consensus 128 ~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 128 RVVRPGGVVAFTTLVQ 143 (251)
T ss_pred HHcCCCeEEEEEeCCC
Confidence 9999999999987543
No 16
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.77 E-value=6.6e-18 Score=139.22 Aligned_cols=142 Identities=19% Similarity=0.365 Sum_probs=103.7
Q ss_pred HHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHh---cCCCeEEEEeC
Q 024797 39 FARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDI 115 (262)
Q Consensus 39 ~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~ 115 (262)
+-+.+++.|++........+ ..+...+..++.. ...++.+|||+|||+|..+..+++ .+..+++|+|+
T Consensus 20 f~~~~a~~yd~~~~~~~p~y--------~~~~~~~~~~~~~-~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~ 90 (247)
T PRK15451 20 FDERVAEVFPDMIQRSVPGY--------SNIISMIGMLAER-FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDN 90 (247)
T ss_pred cChHHHHhhhhHHHhcCCCh--------HHHHHHHHHHHHH-hCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeC
Confidence 33457778876554432211 2222222222222 245778999999999998887765 24568999999
Q ss_pred ChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhc
Q 024797 116 AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195 (262)
Q Consensus 116 s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~ 195 (262)
|+.|++.|+++.... +...+++++++|+.+++. +.+|+|+++.++||+ +.++...++++++++
T Consensus 91 S~~ml~~A~~~~~~~--------~~~~~v~~~~~d~~~~~~-------~~~D~vv~~~~l~~l--~~~~~~~~l~~i~~~ 153 (247)
T PRK15451 91 SPAMIERCRRHIDAY--------KAPTPVDVIEGDIRDIAI-------ENASMVVLNFTLQFL--EPSERQALLDKIYQG 153 (247)
T ss_pred CHHHHHHHHHHHHhc--------CCCCCeEEEeCChhhCCC-------CCCCEEehhhHHHhC--CHHHHHHHHHHHHHh
Confidence 999999999988632 223468999999987754 358999999999988 566788999999999
Q ss_pred cCCCcEEEEEe
Q 024797 196 LRPGGTFIGTM 206 (262)
Q Consensus 196 L~~gG~li~~~ 206 (262)
|+|||.+++..
T Consensus 154 LkpGG~l~l~e 164 (247)
T PRK15451 154 LNPGGALVLSE 164 (247)
T ss_pred cCCCCEEEEEE
Confidence 99999998864
No 17
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.77 E-value=9.5e-18 Score=139.33 Aligned_cols=117 Identities=18% Similarity=0.234 Sum_probs=97.5
Q ss_pred HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (262)
Q Consensus 73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 152 (262)
...++..+...++.+|||+|||+|..+..++.....+|+|+|+|+.|++.|+++... ..++.+.++|+.
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-----------~~~i~~~~~D~~ 109 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-----------KNKIEFEANDIL 109 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-----------CCceEEEECCcc
Confidence 445666666778899999999999988887654445899999999999999987652 245899999998
Q ss_pred ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
..++ ++++||+|++..+++|+ +..++..++++++++|+|||.++++.+
T Consensus 110 ~~~~-----~~~~FD~V~s~~~l~h~--~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 110 KKDF-----PENTFDMIYSRDAILHL--SYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred cCCC-----CCCCeEEEEEhhhHHhC--CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 7776 67899999999888887 556789999999999999999998754
No 18
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.77 E-value=7.1e-18 Score=128.97 Aligned_cols=109 Identities=30% Similarity=0.491 Sum_probs=91.0
Q ss_pred cCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 83 RRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
.++.+|||+|||+|.++..++. .+..+++|+|+|++|++.|++++.+.+ .. +++|.++|+.+++.. .
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~--------~~-ni~~~~~d~~~l~~~--~ 70 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG--------LD-NIEFIQGDIEDLPQE--L 70 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT--------ST-TEEEEESBTTCGCGC--S
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc--------cc-ccceEEeehhccccc--c
Confidence 3578999999999999999984 345689999999999999999876432 22 699999999986620 0
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
+ +.||+|++..+++|+ .++..+++++.+.|++||.+++..+.
T Consensus 71 -~-~~~D~I~~~~~l~~~----~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 71 -E-EKFDIIISNGVLHHF----PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -S-TTEEEEEEESTGGGT----SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -C-CCeeEEEEcCchhhc----cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 2 799999999999988 67889999999999999999988876
No 19
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.75 E-value=1.6e-17 Score=132.32 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=86.6
Q ss_pred ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
..++.+|||+|||+|..+..+++.+ .+|+|+|+|+.|++.+++.....+. .++++.+.|+.++++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~---------~~v~~~~~d~~~~~~----- 92 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENL---------DNLHTAVVDLNNLTF----- 92 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCC---------CcceEEecChhhCCc-----
Confidence 4467899999999999999887653 4899999999999999987763221 247888899877654
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~ 204 (262)
+++||+|++..+++|+ +.++...+++++.++|+|||.+++
T Consensus 93 -~~~fD~I~~~~~~~~~--~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 93 -DGEYDFILSTVVLMFL--EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred -CCCcCEEEEecchhhC--CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 4679999999999887 667889999999999999999544
No 20
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.74 E-value=6e-17 Score=133.01 Aligned_cols=109 Identities=18% Similarity=0.360 Sum_probs=90.5
Q ss_pred ccCCCeEEEecCCCCcchHHHHhc---CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (262)
..++.+|||+|||+|..+..+++. +..+++|+|+|+.|++.|++++... ....++.++++|+..+++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~--------~~~~~v~~~~~d~~~~~~-- 120 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY--------HSEIPVEILCNDIRHVEI-- 120 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc--------CCCCCeEEEECChhhCCC--
Confidence 357789999999999988888763 4568999999999999999987632 123458999999988764
Q ss_pred ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
..+|+|++..++||+ ..++...++++++++|+|||.+++..+
T Consensus 121 -----~~~d~v~~~~~l~~~--~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 121 -----KNASMVILNFTLQFL--PPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred -----CCCCEEeeecchhhC--CHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 358999999999988 666789999999999999999998753
No 21
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.74 E-value=1.5e-17 Score=137.83 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=89.4
Q ss_pred HHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (262)
Q Consensus 75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 153 (262)
.++..+...++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.|++. ++.++++|+.+
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----------------~~~~~~~d~~~ 83 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----------------GVDARTGDVRD 83 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----------------CCcEEEcChhh
Confidence 3455555567889999999999998888764 345899999999999999753 27789999876
Q ss_pred cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
++ ++++||+|+++.++||+ .++..++++++++|+|||.+++.++.
T Consensus 84 ~~------~~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 84 WK------PKPDTDVVVSNAALQWV----PEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CC------CCCCceEEEEehhhhhC----CCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 63 45789999999999998 56788999999999999999998753
No 22
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.73 E-value=1.4e-17 Score=118.44 Aligned_cols=96 Identities=27% Similarity=0.521 Sum_probs=79.2
Q ss_pred EEEecCCCCcchHHHHhcC----CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 88 VLDLACGKGGDLIKWDKAK----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 88 vLDiGcG~G~~~~~l~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
|||+|||+|..+..++... ..+++|+|+|++|++.++++.... ..+++++++|+.+++. ..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~----------~~~~~~~~~D~~~l~~-----~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED----------GPKVRFVQADARDLPF-----SD 65 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT----------TTTSEEEESCTTCHHH-----HS
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc----------CCceEEEECCHhHCcc-----cC
Confidence 7999999999999887642 368999999999999999987631 2369999999999876 57
Q ss_pred CCeeEEEEcc-cccccCCCHHHHHHHHHHHHhccCCCc
Q 024797 164 APFDICSCQF-AMHYSWSTEARARRALANVSALLRPGG 200 (262)
Q Consensus 164 ~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~L~~gG 200 (262)
++||+|++.+ +++|+ +.+....+++++.++|+|||
T Consensus 66 ~~~D~v~~~~~~~~~~--~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 66 GKFDLVVCSGLSLHHL--SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSEEEEEE-TTGGGGS--SHHHHHHHHHHHHHTEEEEE
T ss_pred CCeeEEEEcCCccCCC--CHHHHHHHHHHHHHHhCCCC
Confidence 8999999955 49998 88899999999999999998
No 23
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.73 E-value=3.4e-17 Score=136.05 Aligned_cols=111 Identities=20% Similarity=0.361 Sum_probs=91.8
Q ss_pred HHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (262)
Q Consensus 74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 152 (262)
+.++..+...++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|+++.. ++.++.+|+.
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~--------------~~~~~~~d~~ 86 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP--------------DCQFVEADIA 86 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC--------------CCeEEECchh
Confidence 33455555567889999999999999888764 45689999999999999998754 3788999987
Q ss_pred ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
.+. ++++||+|+++.+++|+ .+...+++++.++|+|||.+++.+++
T Consensus 87 ~~~------~~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 87 SWQ------PPQALDLIFANASLQWL----PDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred ccC------CCCCccEEEEccChhhC----CCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 654 35689999999999988 56788999999999999999998754
No 24
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.73 E-value=2.6e-17 Score=139.96 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=86.5
Q ss_pred cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
.++.+|||+|||+|..+..+++. +...++++|+|++|++.|+++.. ..++.++.+|+.++++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~------------~~~i~~i~gD~e~lp~----- 174 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------------LKECKIIEGDAEDLPF----- 174 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh------------ccCCeEEeccHHhCCC-----
Confidence 46789999999999988877653 34589999999999999998754 2347889999988876
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
++++||+|++..+++|+ .+...+++++.++|+|||.+++..
T Consensus 175 ~~~sFDvVIs~~~L~~~----~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 175 PTDYADRYVSAGSIEYW----PDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred CCCceeEEEEcChhhhC----CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 67899999999999987 456789999999999999987754
No 25
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=3.3e-17 Score=134.31 Aligned_cols=115 Identities=22% Similarity=0.284 Sum_probs=99.4
Q ss_pred HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (262)
Q Consensus 73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 152 (262)
++.++..+.+.+|.+|||||||.|.++..+++.-..+|+|+++|+++.+.+++++... ++..+++++..|..
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~--------gl~~~v~v~l~d~r 132 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAAR--------GLEDNVEVRLQDYR 132 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHc--------CCCcccEEEecccc
Confidence 4455666778899999999999999999998876669999999999999999988754 34557999999988
Q ss_pred ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
++. ++||-|++...++|+ ..+....+++.+.++|+|||.+++-
T Consensus 133 d~~--------e~fDrIvSvgmfEhv--g~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 133 DFE--------EPFDRIVSVGMFEHV--GKENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred ccc--------cccceeeehhhHHHh--CcccHHHHHHHHHhhcCCCceEEEE
Confidence 764 449999999999999 7788999999999999999998654
No 26
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.72 E-value=9.2e-17 Score=127.72 Aligned_cols=106 Identities=22% Similarity=0.242 Sum_probs=84.7
Q ss_pred hccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
...++.+|||+|||+|..+..+++.+ ..|+|+|+|+.|++.++++.... ..++.+.++|+...++
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~----------~~~v~~~~~d~~~~~~---- 91 (195)
T TIGR00477 27 KTVAPCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARE----------NLPLRTDAYDINAAAL---- 91 (195)
T ss_pred ccCCCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHh----------CCCceeEeccchhccc----
Confidence 34456799999999999999887654 48999999999999998876521 1236677788765543
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
+++||+|++..+++|+ +.++...+++++.++|+|||++++.
T Consensus 92 --~~~fD~I~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 --NEDYDFIFSTVVFMFL--QAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred --cCCCCEEEEecccccC--CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3679999999999887 6677889999999999999985543
No 27
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.71 E-value=7.8e-17 Score=133.85 Aligned_cols=116 Identities=22% Similarity=0.264 Sum_probs=89.7
Q ss_pred HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (262)
Q Consensus 73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 152 (262)
++.++..+.+.+|.+|||||||.|.++..+++....+|+|+.+|+++.+.+++++.+. ++..++++.++|..
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~--------gl~~~v~v~~~D~~ 122 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREA--------GLEDRVEVRLQDYR 122 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCS--------TSSSTEEEEES-GG
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhc--------CCCCceEEEEeecc
Confidence 3445556677899999999999999999998764458999999999999999998854 34567999999987
Q ss_pred ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
+++ .+||.|++..+++|+ ..++...+++++.++|+|||.+++..
T Consensus 123 ~~~--------~~fD~IvSi~~~Ehv--g~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 123 DLP--------GKFDRIVSIEMFEHV--GRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp G-----------S-SEEEEESEGGGT--CGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred ccC--------CCCCEEEEEechhhc--ChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 653 499999999999999 66788999999999999999998653
No 28
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.71 E-value=2.7e-17 Score=131.31 Aligned_cols=111 Identities=21% Similarity=0.283 Sum_probs=88.8
Q ss_pred CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (262)
|.+|||+|||+|.++..|++.+ ..|+|+|++++|++.|++........+ .....++.+.+.+++... +
T Consensus 90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~---~~~~y~l~~~~~~~E~~~--------~ 157 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLE---GAIAYRLEYEDTDVEGLT--------G 157 (282)
T ss_pred CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhc---cccceeeehhhcchhhcc--------c
Confidence 4789999999999999998766 489999999999999999843211110 111224667777776653 5
Q ss_pred CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV 211 (262)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~ 211 (262)
.||+|+|..+++|+ +++..++..+.+.|+|||.+++++-+...
T Consensus 158 ~fDaVvcsevleHV----~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHV----KDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred ccceeeeHHHHHHH----hCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 59999999999999 89999999999999999999999877653
No 29
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.70 E-value=1.2e-16 Score=136.06 Aligned_cols=110 Identities=20% Similarity=0.172 Sum_probs=88.2
Q ss_pred HHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797 79 QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (262)
Q Consensus 79 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (262)
.+...++.+|||+|||+|.++..++..+...|+|+|+|+.++.+++...... ....++.++.+|+.+++.
T Consensus 117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~--------~~~~~i~~~~~d~e~lp~-- 186 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLL--------GNDQRAHLLPLGIEQLPA-- 186 (322)
T ss_pred hhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhc--------CCCCCeEEEeCCHHHCCC--
Confidence 3334567899999999999999888766667999999999987655432210 113468999999988764
Q ss_pred ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
+++||+|++..+++|. .++..++++++++|+|||.+++++
T Consensus 187 ----~~~FD~V~s~~vl~H~----~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 187 ----LKAFDTVFSMGVLYHR----RSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ----cCCcCEEEECChhhcc----CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 5789999999999998 567889999999999999999874
No 30
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.70 E-value=1.5e-16 Score=143.27 Aligned_cols=113 Identities=21% Similarity=0.254 Sum_probs=93.5
Q ss_pred HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (262)
Q Consensus 76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 155 (262)
++..+...++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++.. ....++.+.++|+...+
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~----------~~~~~v~~~~~d~~~~~ 327 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI----------GRKCSVEFEVADCTKKT 327 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh----------cCCCceEEEEcCcccCC
Confidence 44444456778999999999998888876545589999999999999988764 22346899999998877
Q ss_pred cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
+ ++++||+|++..+++|+ .++..++++++++|+|||.++++.+
T Consensus 328 ~-----~~~~fD~I~s~~~l~h~----~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 328 Y-----PDNSFDVIYSRDTILHI----QDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred C-----CCCCEEEEEECCccccc----CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 6 56889999999999998 5678999999999999999998753
No 31
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.70 E-value=5.3e-16 Score=125.89 Aligned_cols=140 Identities=21% Similarity=0.406 Sum_probs=109.6
Q ss_pred hHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCC--CeEEEEe
Q 024797 37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGID 114 (262)
Q Consensus 37 ~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD 114 (262)
.++|+.++.+|+..... . .......|...++......++.+|||+|||+|..+..+++... .+++|+|
T Consensus 2 ~~~~~~~~~~y~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD 71 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDL-L---------SFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVD 71 (223)
T ss_pred HhHHHHHHhhhhHHHHH-H---------hcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEE
Confidence 35889999999864221 1 1223345666666666666788999999999999888876543 4899999
Q ss_pred CChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHh
Q 024797 115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA 194 (262)
Q Consensus 115 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~ 194 (262)
+++.+++.++++.. ...++.+..+|+.+.+. +.++||+|++..+++++ .++..+++++.+
T Consensus 72 ~~~~~~~~~~~~~~-----------~~~~i~~~~~d~~~~~~-----~~~~~D~i~~~~~~~~~----~~~~~~l~~~~~ 131 (223)
T TIGR01934 72 FSSEMLEVAKKKSE-----------LPLNIEFIQADAEALPF-----EDNSFDAVTIAFGLRNV----TDIQKALREMYR 131 (223)
T ss_pred CCHHHHHHHHHHhc-----------cCCCceEEecchhcCCC-----CCCcEEEEEEeeeeCCc----ccHHHHHHHHHH
Confidence 99999999988764 13458899999988765 56789999999999877 667899999999
Q ss_pred ccCCCcEEEEEe
Q 024797 195 LLRPGGTFIGTM 206 (262)
Q Consensus 195 ~L~~gG~li~~~ 206 (262)
+|+|||.+++..
T Consensus 132 ~L~~gG~l~~~~ 143 (223)
T TIGR01934 132 VLKPGGRLVILE 143 (223)
T ss_pred HcCCCcEEEEEE
Confidence 999999998754
No 32
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.70 E-value=1.2e-16 Score=134.79 Aligned_cols=113 Identities=19% Similarity=0.094 Sum_probs=87.7
Q ss_pred HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (262)
Q Consensus 76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 155 (262)
++..+...++.+|||+|||+|.++..++..+...|+|+|+|+.|+.+++...... ....++.+..+++.+++
T Consensus 113 ~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~--------~~~~~v~~~~~~ie~lp 184 (314)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLL--------DNDKRAILEPLGIEQLH 184 (314)
T ss_pred HHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHh--------ccCCCeEEEECCHHHCC
Confidence 3444445678899999999999888887666668999999999998754321100 01235778888888776
Q ss_pred cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
. ..+||+|++.++++|. .++..++++++++|+|||.|++.+
T Consensus 185 ~------~~~FD~V~s~gvL~H~----~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 185 E------LYAFDTVFSMGVLYHR----KSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred C------CCCcCEEEEcchhhcc----CCHHHHHHHHHHhcCCCCEEEEEE
Confidence 3 3589999999999998 667889999999999999999864
No 33
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.70 E-value=2.1e-16 Score=129.61 Aligned_cols=105 Identities=25% Similarity=0.471 Sum_probs=89.0
Q ss_pred cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
..+.+|||+|||+|.++..++.. ...+++|+|+|+.+++.++++.. .++.++++|+.+.++
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------------~~~~~~~~d~~~~~~----- 94 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------------ENVQFICGDAEKLPL----- 94 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------------CCCeEEecchhhCCC-----
Confidence 34578999999999998888764 34469999999999999988754 257899999988775
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 209 (262)
++++||+|++..+++|. .+...++.++.++|+|||.+++.++..
T Consensus 95 ~~~~fD~vi~~~~l~~~----~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 95 EDSSFDLIVSNLALQWC----DDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred CCCceeEEEEhhhhhhc----cCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 57889999999999987 667889999999999999999987654
No 34
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.70 E-value=3.5e-16 Score=124.94 Aligned_cols=100 Identities=14% Similarity=0.181 Sum_probs=82.8
Q ss_pred cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
.++.+|||+|||+|..+..++.. +...++|+|+|++|++.|+++.. ++.+.++|+.+ ++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--------------~~~~~~~d~~~-~~----- 101 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--------------NINIIQGSLFD-PF----- 101 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--------------CCcEEEeeccC-CC-----
Confidence 46778999999999999888764 45689999999999999998654 26778888877 54
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
++++||+|++..+++|+ ++++..++++++.+++ ++.+++..
T Consensus 102 ~~~sfD~V~~~~vL~hl--~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 102 KDNFFDLVLTKGVLIHI--NPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CCCCEEEEEECChhhhC--CHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 67899999999999998 6778899999999998 45665543
No 35
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.70 E-value=4.2e-16 Score=127.83 Aligned_cols=146 Identities=27% Similarity=0.417 Sum_probs=111.0
Q ss_pred cchhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcC--CCeEE
Q 024797 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYV 111 (262)
Q Consensus 34 ~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~ 111 (262)
...+++|+.++.+|+... ... .......|...++..+...++.+|||+|||+|.++..++... ..+++
T Consensus 11 ~~~~~~~~~~~~~y~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~ 80 (239)
T PRK00216 11 EKVAEMFDSIAPKYDLMN-DLL---------SFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVV 80 (239)
T ss_pred HHHHHHHHHhhhhHHHHH-HHH---------hcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEE
Confidence 345679999999997421 100 012233456666666656677899999999999988887654 46899
Q ss_pred EEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHH
Q 024797 112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191 (262)
Q Consensus 112 gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~ 191 (262)
|+|+++.+++.++++.... ....++.+..+|+.+.+. +.+.||+|++..++++. .+...++..
T Consensus 81 ~~D~s~~~~~~a~~~~~~~--------~~~~~~~~~~~d~~~~~~-----~~~~~D~I~~~~~l~~~----~~~~~~l~~ 143 (239)
T PRK00216 81 GLDFSEGMLAVGREKLRDL--------GLSGNVEFVQGDAEALPF-----PDNSFDAVTIAFGLRNV----PDIDKALRE 143 (239)
T ss_pred EEeCCHHHHHHHHHhhccc--------ccccCeEEEecccccCCC-----CCCCccEEEEecccccC----CCHHHHHHH
Confidence 9999999999999987521 223468899999987764 56789999999999887 567889999
Q ss_pred HHhccCCCcEEEEEe
Q 024797 192 VSALLRPGGTFIGTM 206 (262)
Q Consensus 192 ~~~~L~~gG~li~~~ 206 (262)
+.++|+|||.+++..
T Consensus 144 ~~~~L~~gG~li~~~ 158 (239)
T PRK00216 144 MYRVLKPGGRLVILE 158 (239)
T ss_pred HHHhccCCcEEEEEE
Confidence 999999999987753
No 36
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.69 E-value=8.4e-17 Score=123.85 Aligned_cols=100 Identities=27% Similarity=0.435 Sum_probs=80.7
Q ss_pred ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
..++.+|||+|||.|.++..+...+. +++|+|+++.+++. .. +.....+......
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~--~~-----------------~~~~~~~~~~~~~----- 74 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK--RN-----------------VVFDNFDAQDPPF----- 74 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH--TT-----------------SEEEEEECHTHHC-----
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh--hh-----------------hhhhhhhhhhhhc-----
Confidence 36788999999999998888865555 89999999999988 11 2233333333333
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~ 210 (262)
++++||+|+++.+++|+ +++..+|+++.++|+|||++++++++..
T Consensus 75 ~~~~fD~i~~~~~l~~~----~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEHL----PDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp HSSSEEEEEEESSGGGS----SHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred cccchhhHhhHHHHhhc----ccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 57899999999999999 5799999999999999999999998753
No 37
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.69 E-value=4.2e-16 Score=120.00 Aligned_cols=106 Identities=21% Similarity=0.300 Sum_probs=89.5
Q ss_pred CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeE-EEeCcccccccccccCCC
Q 024797 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR-LICGDCYEVHLDKVLADD 163 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~ 163 (262)
...|||+|||+|....++--.+..+|+++|+++.|-+.+.+.+.+. -..++. |++++.++++.. ++
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~---------k~~~~~~fvva~ge~l~~l----~d 143 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK---------KPLQVERFVVADGENLPQL----AD 143 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc---------cCcceEEEEeechhcCccc----cc
Confidence 3468999999999888774346668999999999999999988753 244566 999999998832 78
Q ss_pred CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
+++|+|++.+++... +++.+.|+++.++|+|||++++.-+
T Consensus 144 ~s~DtVV~TlvLCSv----e~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 144 GSYDTVVCTLVLCSV----EDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred CCeeeEEEEEEEecc----CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999999999855 8999999999999999999988653
No 38
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.68 E-value=7.2e-16 Score=119.15 Aligned_cols=108 Identities=22% Similarity=0.296 Sum_probs=84.4
Q ss_pred ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
...-.++||+|||.|.++..|+.. +..++++|+|+.+++.|+++... ..+|.+.++|+.+..
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~-----------~~~V~~~~~dvp~~~------ 102 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG-----------LPHVEWIQADVPEFW------ 102 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT------------SSEEEEES-TTT--------
T ss_pred ccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC-----------CCCeEEEECcCCCCC------
Confidence 344578999999999999998654 46899999999999999999873 356999999997753
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
|+++||+|++..+++|+ .+.++...++..+.+.|+|||.||+....
T Consensus 103 P~~~FDLIV~SEVlYYL-~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 103 PEGRFDLIVLSEVLYYL-DDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp -SS-EEEEEEES-GGGS-SSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred CCCCeeEEEEehHhHcC-CCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 68999999999999887 44678999999999999999999998653
No 39
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.67 E-value=9.4e-18 Score=118.84 Aligned_cols=98 Identities=24% Similarity=0.355 Sum_probs=61.7
Q ss_pred EEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCee
Q 024797 89 LDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFD 167 (262)
Q Consensus 89 LDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 167 (262)
||+|||+|.++..++.. +..+++|+|+|+.|++.+++++.... ..+......+..+.... ...++||
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---------~~~~~~~~~~~~~~~~~---~~~~~fD 68 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---------NDNFERLRFDVLDLFDY---DPPESFD 68 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------------EEEEE--SSS---C---CC----S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---------CcceeEEEeecCChhhc---ccccccc
Confidence 79999999999998775 55579999999999998888876422 11223333332222110 0236999
Q ss_pred EEEEcccccccCCCHHHHHHHHHHHHhccCCCcEE
Q 024797 168 ICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202 (262)
Q Consensus 168 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~l 202 (262)
+|++.+++||+ +++..++++++++|+|||.|
T Consensus 69 ~V~~~~vl~~l----~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 69 LVVASNVLHHL----EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EEEEE-TTS------S-HHHHHHHHTTT-TSS-EE
T ss_pred eehhhhhHhhh----hhHHHHHHHHHHHcCCCCCC
Confidence 99999999998 77889999999999999986
No 40
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.67 E-value=9.8e-16 Score=129.04 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=85.6
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.++++.... ..++.+.+.|+..... +
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~----------~l~v~~~~~D~~~~~~------~ 182 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKE----------NLNIRTGLYDINSASI------Q 182 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHc----------CCceEEEEechhcccc------c
Confidence 45699999999999999887654 48999999999999999887632 2257888888876543 5
Q ss_pred CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
++||+|++..+++|+ +.++...+++++.++|+|||++++.
T Consensus 183 ~~fD~I~~~~vl~~l--~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 183 EEYDFILSTVVLMFL--NRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred CCccEEEEcchhhhC--CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 789999999999987 6678899999999999999996654
No 41
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.67 E-value=7.7e-16 Score=120.30 Aligned_cols=106 Identities=16% Similarity=0.274 Sum_probs=84.9
Q ss_pred hccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
...++.++||+|||.|+.+..+++.+. .|+++|.|+.+++.+++...+. ...++..+.|+.+..+
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~----------~l~i~~~~~Dl~~~~~---- 91 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEE----------GLDIRTRVADLNDFDF---- 91 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHT----------T-TEEEEE-BGCCBS-----
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhc----------CceeEEEEecchhccc----
Confidence 344678999999999999999987776 7999999999999988776532 3348889999988765
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
++.||+|++..+++|+ ..+....+++.+.+.++|||++++.
T Consensus 92 --~~~yD~I~st~v~~fL--~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 92 --PEEYDFIVSTVVFMFL--QRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp --TTTEEEEEEESSGGGS---GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred --cCCcCEEEEEEEeccC--CHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 4789999999999988 6677889999999999999998774
No 42
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.66 E-value=2.2e-16 Score=122.44 Aligned_cols=109 Identities=22% Similarity=0.335 Sum_probs=95.5
Q ss_pred HHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (262)
Q Consensus 76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (262)
++.++...+..+|.|+|||+|..+..+++. +...++|+|.|++|++.|+++.. +++|..+|+.++
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp--------------~~~f~~aDl~~w 87 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP--------------DATFEEADLRTW 87 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC--------------CCceecccHhhc
Confidence 555556677889999999999888888764 55679999999999999998866 489999999887
Q ss_pred ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
. ++..+|+++++.+++++ ++..++|.++...|.|||.|.+-+|+
T Consensus 88 ~------p~~~~dllfaNAvlqWl----pdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 88 K------PEQPTDLLFANAVLQWL----PDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred C------CCCccchhhhhhhhhhc----cccHHHHHHHHHhhCCCceEEEECCC
Confidence 6 67889999999999998 77889999999999999999999985
No 43
>PRK06922 hypothetical protein; Provisional
Probab=99.66 E-value=1.1e-15 Score=137.69 Aligned_cols=109 Identities=22% Similarity=0.361 Sum_probs=88.8
Q ss_pred cCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--cccc
Q 024797 83 RRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDKV 159 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~ 159 (262)
.++.+|||+|||+|..+..+++ .+...++|+|+|+.|++.|+++.... ..++.++++|+.+++ +
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----------g~~ie~I~gDa~dLp~~f--- 483 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----------GRSWNVIKGDAINLSSSF--- 483 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----------CCCeEEEEcchHhCcccc---
Confidence 3678999999999988877765 35568999999999999999876421 235788999988765 3
Q ss_pred cCCCCCeeEEEEcccccccCC---------CHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 160 LADDAPFDICSCQFAMHYSWS---------TEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~---------~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
++++||+|+++.++|+++. +.++...+++++.++|||||.+++..
T Consensus 484 --edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 484 --EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred --CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 5789999999998886532 24678999999999999999999874
No 44
>PRK08317 hypothetical protein; Provisional
Probab=99.66 E-value=1.7e-15 Score=124.21 Aligned_cols=116 Identities=28% Similarity=0.431 Sum_probs=94.5
Q ss_pred HHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (262)
Q Consensus 74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 151 (262)
..++......++.+|||+|||+|.++..++.. +..+++|+|+|+.+++.++++.. ....++.+.++|+
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~----------~~~~~~~~~~~d~ 78 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA----------GLGPNVEFVRGDA 78 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh----------CCCCceEEEeccc
Confidence 33445555678889999999999988888764 34689999999999999988733 1134688999998
Q ss_pred cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
...++ ++++||+|++..+++|+ .++..+++++.++|+|||.+++..++
T Consensus 79 ~~~~~-----~~~~~D~v~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 79 DGLPF-----PDGSFDAVRSDRVLQHL----EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ccCCC-----CCCCceEEEEechhhcc----CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 87765 56899999999999988 56788999999999999999887653
No 45
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.66 E-value=7.3e-16 Score=127.93 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=85.5
Q ss_pred CCCeEEEecCCCCcc----hHHHHhc------CCCeEEEEeCChhHHHHHHHHhccC----ccc------ccc-------
Q 024797 84 RGDVVLDLACGKGGD----LIKWDKA------KIGYYVGIDIAEGSIEDCRTRYNGD----ADH------HQR------- 136 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~----~~~l~~~------~~~~v~gvD~s~~~~~~a~~~~~~~----~~~------~~~------- 136 (262)
++.+|||+|||+|.. +..+++. ...+|+|+|+|+.|++.|++..-.. +.. .+.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 457999999999974 3333321 1347999999999999999864210 000 000
Q ss_pred -ccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 137 -RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 137 -~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
......+|.|.++|+.+.+. +.++||+|+|.++++|+ +.+...+++++++++|+|||+|++.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~-----~~~~fD~I~crnvl~yf--~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP-----PLGDFDLIFCRNVLIYF--DEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC-----ccCCCCEEEechhHHhC--CHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 00122468999999988764 57899999999999998 7778899999999999999999985
No 46
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.66 E-value=8.5e-16 Score=128.61 Aligned_cols=106 Identities=21% Similarity=0.359 Sum_probs=87.3
Q ss_pred ccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (262)
..++.+|||+|||+|..+..+++. ..++|+|+|+|+.|++.|+++....+ ..+++++++|+.++++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g---------~~~v~~~~~d~~~l~~--- 142 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG---------YTNVEFRLGEIEALPV--- 142 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC---------CCCEEEEEcchhhCCC---
Confidence 467899999999999876655542 34579999999999999999876322 1358899999988776
Q ss_pred cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
+++.||+|+++.+++|. .+...+++++.++|+|||++++.
T Consensus 143 --~~~~fD~Vi~~~v~~~~----~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 143 --ADNSVDVIISNCVINLS----PDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred --CCCceeEEEEcCcccCC----CCHHHHHHHHHHHcCCCcEEEEE
Confidence 57799999999999876 45678999999999999999885
No 47
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.66 E-value=2.6e-15 Score=120.56 Aligned_cols=125 Identities=22% Similarity=0.225 Sum_probs=90.2
Q ss_pred HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCcc----ccccccCCCCCeEEEe
Q 024797 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDAD----HHQRRKKFSFPARLIC 148 (262)
Q Consensus 73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~~~~~~~~v~~~~ 148 (262)
+...+..+...++.+|||+|||.|+.+..++..+. .|+|+|+|+.+++.+.+....... ++.+. ....++++.+
T Consensus 23 l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 100 (213)
T TIGR03840 23 LVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTR-YRAGNIEIFC 100 (213)
T ss_pred HHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceecccccee-eecCceEEEE
Confidence 33344433334678999999999999999986555 799999999999986443211000 00000 0134689999
Q ss_pred CcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 149 GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 149 ~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
+|+.+++.. ..+.||.|+-..+++|+ +++.+..+++.+.++|+|||.+++.
T Consensus 101 ~D~~~~~~~----~~~~fD~i~D~~~~~~l--~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 101 GDFFALTAA----DLGPVDAVYDRAALIAL--PEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred ccCCCCCcc----cCCCcCEEEechhhccC--CHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 999887631 13679999998888888 7888999999999999999975544
No 48
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.64 E-value=2.6e-15 Score=130.77 Aligned_cols=112 Identities=21% Similarity=0.231 Sum_probs=91.4
Q ss_pred HHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (262)
Q Consensus 74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 153 (262)
..++..+...++.+|||+|||+|.++..+++....+|+|+|+|+++++.|+++.. ...+++..+|...
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~------------~l~v~~~~~D~~~ 224 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA------------GLPVEIRLQDYRD 224 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc------------cCeEEEEECchhh
Confidence 3344555567889999999999999988876544589999999999999999875 2237788888654
Q ss_pred cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
+ +++||+|++..+++|+ +..+...+++++.++|+|||.+++...
T Consensus 225 l--------~~~fD~Ivs~~~~ehv--g~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 225 L--------NGQFDRIVSVGMFEHV--GPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred c--------CCCCCEEEEeCchhhC--ChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 3 3689999999999988 666778999999999999999998653
No 49
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.64 E-value=4.5e-15 Score=116.63 Aligned_cols=114 Identities=20% Similarity=0.200 Sum_probs=87.2
Q ss_pred ccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
..++.+|||+|||+|..+..++. .+..+|+|+|+|+.|++.|+++....+ . .+++++++|+.+++
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~--------l-~~i~~~~~d~~~~~----- 108 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG--------L-KNVTVVHGRAEEFG----- 108 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC--------C-CCEEEEeccHhhCC-----
Confidence 34588999999999998888765 455689999999999999999887432 2 23899999998764
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC-hHHHHHHHhh
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD-ANVIIKKLRE 218 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~-~~~~~~~~~~ 218 (262)
..++||+|++... .++..+++.+.++|+|||.+++.... ...-+..+.+
T Consensus 109 -~~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~ 158 (187)
T PRK00107 109 -QEEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPK 158 (187)
T ss_pred -CCCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHH
Confidence 2568999998652 33577999999999999999887643 3333444444
No 50
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.64 E-value=2.4e-15 Score=116.04 Aligned_cols=110 Identities=25% Similarity=0.315 Sum_probs=90.1
Q ss_pred ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
..++.+|||+|||.|.++..+........+|+|++++.+..|.++- +.++++|+.+-- . .+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG----------------v~Viq~Dld~gL-~--~f 71 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG----------------VSVIQGDLDEGL-A--DF 71 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC----------------CCEEECCHHHhH-h--hC
Confidence 4789999999999999998887766668999999999998887653 678999986531 1 13
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHh
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~ 217 (262)
++++||.|+++.+++++ ..+..+|+++.|+ |...++++||...+-.++.
T Consensus 72 ~d~sFD~VIlsqtLQ~~----~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~ 120 (193)
T PF07021_consen 72 PDQSFDYVILSQTLQAV----RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQ 120 (193)
T ss_pred CCCCccEEehHhHHHhH----hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHH
Confidence 79999999999999988 7888898888655 7789999999977655443
No 51
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.64 E-value=2.8e-15 Score=119.80 Aligned_cols=117 Identities=21% Similarity=0.274 Sum_probs=89.3
Q ss_pred cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc-cccc--ccc
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVH--LDK 158 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~-~~~~--~~~ 158 (262)
.++.+|||+|||+|..+..+++. +..+|+|+|+|+++++.|+++.... . ..++.++++|+ ..++ +
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~--------~-~~~v~~~~~d~~~~l~~~~-- 107 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE--------G-LTNLRLLCGDAVEVLLDMF-- 107 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc--------C-CCCEEEEecCHHHHHHHHc--
Confidence 46789999999999999888764 4457999999999999999887632 1 24589999998 6554 3
Q ss_pred ccCCCCCeeEEEEcccccccCC----CHHHHHHHHHHHHhccCCCcEEEEEeCChHHHH
Q 024797 159 VLADDAPFDICSCQFAMHYSWS----TEARARRALANVSALLRPGGTFIGTMPDANVII 213 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~----~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~ 213 (262)
++++||+|++++...+... .......++++++++|+|||.+++.+++.....
T Consensus 108 ---~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~ 163 (202)
T PRK00121 108 ---PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAE 163 (202)
T ss_pred ---CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHH
Confidence 5678999998765432200 001246789999999999999999988776543
No 52
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.63 E-value=3.7e-15 Score=124.66 Aligned_cols=110 Identities=19% Similarity=0.358 Sum_probs=84.3
Q ss_pred HHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-C---CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEe
Q 024797 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-K---IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC 148 (262)
Q Consensus 73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~ 148 (262)
+...+......+..+|||+|||+|.++..+++. + ...++|+|+|+.|++.|+++.. ++.+.+
T Consensus 74 i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~--------------~~~~~~ 139 (272)
T PRK11088 74 VANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP--------------QVTFCV 139 (272)
T ss_pred HHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC--------------CCeEEE
Confidence 333343333345678999999999988887653 1 1369999999999999987643 378999
Q ss_pred CcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797 149 GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (262)
Q Consensus 149 ~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~ 212 (262)
+|+.++++ ++++||+|++.+.. ..+.++.|+|+|||.+++.++....+
T Consensus 140 ~d~~~lp~-----~~~sfD~I~~~~~~-----------~~~~e~~rvLkpgG~li~~~p~~~~l 187 (272)
T PRK11088 140 ASSHRLPF-----ADQSLDAIIRIYAP-----------CKAEELARVVKPGGIVITVTPGPRHL 187 (272)
T ss_pred eecccCCC-----cCCceeEEEEecCC-----------CCHHHHHhhccCCCEEEEEeCCCcch
Confidence 99988887 67899999976542 13578999999999999998877544
No 53
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.63 E-value=7.5e-15 Score=115.09 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=80.5
Q ss_pred CCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.++++..+.+ ..+++++++|+.++. .
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~---------~~~i~~i~~d~~~~~------~ 106 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG---------LNNVEIVNGRAEDFQ------H 106 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC---------CCCeEEEecchhhcc------c
Confidence 5789999999999988887653 44689999999999999988776322 135899999998763 3
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
.++||+|++.. ++ +...+++.+.++|+|||.+++...
T Consensus 107 ~~~fD~I~s~~-~~-------~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 107 EEQFDVITSRA-LA-------SLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred cCCccEEEehh-hh-------CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 57899999876 33 245678888999999999998764
No 54
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.63 E-value=1.1e-14 Score=106.99 Aligned_cols=112 Identities=21% Similarity=0.161 Sum_probs=85.0
Q ss_pred HHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (262)
Q Consensus 76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (262)
++..+...++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++....+ ..+++++.+|+...
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------~~~~~~~~~~~~~~ 81 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG---------VSNIVIVEGDAPEA 81 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC---------CCceEEEecccccc
Confidence 444444556789999999999999988774 34689999999999999998876321 12478888887642
Q ss_pred ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
... ..++||+|++..... ....+++.+.+.|+|||.+++.+.
T Consensus 82 ~~~----~~~~~D~v~~~~~~~-------~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 82 LED----SLPEPDRVFIGGSGG-------LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred Chh----hcCCCCEEEECCcch-------hHHHHHHHHHHHcCCCCEEEEEec
Confidence 110 246899999876543 346899999999999999998753
No 55
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.61 E-value=3.3e-15 Score=121.50 Aligned_cols=104 Identities=22% Similarity=0.252 Sum_probs=86.3
Q ss_pred CeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797 86 DVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (262)
Q Consensus 86 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (262)
.+|||+|||+|..+..+++. +..+++|+|+|+++++.+++++... +...+++++.+|+...+. .+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~--------gl~~~i~~~~~d~~~~~~------~~ 66 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL--------GLQGRIRIFYRDSAKDPF------PD 66 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc--------CCCcceEEEecccccCCC------CC
Confidence 37999999999988888764 3457999999999999999987632 334568999999866553 45
Q ss_pred CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
+||+|++..+++|+ .+...+++++.++|+|||.+++..+
T Consensus 67 ~fD~I~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 67 TYDLVFGFEVIHHI----KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred CCCEeehHHHHHhC----CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 89999999999988 5578999999999999999998753
No 56
>PLN03075 nicotianamine synthase; Provisional
Probab=99.61 E-value=8.9e-15 Score=121.43 Aligned_cols=111 Identities=11% Similarity=0.035 Sum_probs=89.3
Q ss_pred ccCCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (262)
..++.+|+|||||.|.++..++. .+.++++|+|+++++++.|++.+.. ..++..+++|.++|+.+...
T Consensus 121 ~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-------~~gL~~rV~F~~~Da~~~~~-- 191 (296)
T PLN03075 121 NGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-------DPDLSKRMFFHTADVMDVTE-- 191 (296)
T ss_pred cCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-------ccCccCCcEEEECchhhccc--
Confidence 34778999999998866554433 3556899999999999999998842 12345679999999987532
Q ss_pred ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
..+.||+|++. +++++ +.+++.++++++++.|+|||.+++...
T Consensus 192 ---~l~~FDlVF~~-ALi~~--dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 192 ---SLKEYDVVFLA-ALVGM--DKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred ---ccCCcCEEEEe-ccccc--ccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 24789999999 88887 667889999999999999999999863
No 57
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.61 E-value=4.7e-15 Score=112.04 Aligned_cols=137 Identities=23% Similarity=0.324 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHHHhccCC-CeEEEecCCCCcchHHHHhcCCC-eEEEEeCChhHHHHHHHHhccCccccccccCCCCCe
Q 024797 67 KKLNNWIKSVLVQLYARRG-DVVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA 144 (262)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~~-~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v 144 (262)
.++..|+..........+. .+|||+|||+|.++..|++.+.. ..+|+|.|+.+++.|+..+.. .+....+
T Consensus 49 ~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~--------~~~~n~I 120 (227)
T KOG1271|consen 49 ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAER--------DGFSNEI 120 (227)
T ss_pred HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHh--------cCCCcce
Confidence 3555666555443323333 49999999999999999876544 499999999999999877663 2334459
Q ss_pred EEEeCcccccccccccCCCCCeeEEEEccccccc---CCC-HHHHHHHHHHHHhccCCCcEEEEEeCCh--HHHHHHH
Q 024797 145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS---WST-EARARRALANVSALLRPGGTFIGTMPDA--NVIIKKL 216 (262)
Q Consensus 145 ~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~---~~~-~~~~~~~l~~~~~~L~~gG~li~~~~~~--~~~~~~~ 216 (262)
+|.+.|+....+ ..++||+|+--+++.-+ .+. ...+...+..+.+.|+|||+++|+..|. +.+.+.+
T Consensus 121 ~f~q~DI~~~~~-----~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f 193 (227)
T KOG1271|consen 121 RFQQLDITDPDF-----LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEF 193 (227)
T ss_pred eEEEeeccCCcc-----cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHH
Confidence 999999988655 56788888755543322 011 1223567888999999999999998775 3444443
No 58
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.60 E-value=2.2e-14 Score=123.37 Aligned_cols=164 Identities=14% Similarity=0.134 Sum_probs=107.6
Q ss_pred chhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEE
Q 024797 35 STKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGI 113 (262)
Q Consensus 35 ~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gv 113 (262)
..+..|+..++.|........-.........-.....-...++.......+..+||||||+|.++..+++. +...++|+
T Consensus 73 ~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGI 152 (390)
T PRK14121 73 ILKKALKIFSELFCADIISHNLAENSKKLSLKKPYILDIDNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGI 152 (390)
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccccccCCHHHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEE
Confidence 34578888888886333222100000000000000000122344444556779999999999999999874 45579999
Q ss_pred eCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHH----HHHHH
Q 024797 114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR----ARRAL 189 (262)
Q Consensus 114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~----~~~~l 189 (262)
|+++.+++.|.+++...+ ..++.++++|+..+.. . .+++++|.|++++...|. .... ...++
T Consensus 153 EI~~~~i~~a~~ka~~~g---------L~NV~~i~~DA~~ll~--~-~~~~s~D~I~lnFPdPW~--KkrHRRlv~~~fL 218 (390)
T PRK14121 153 EIHTPSIEQVLKQIELLN---------LKNLLIINYDARLLLE--L-LPSNSVEKIFVHFPVPWD--KKPHRRVISEDFL 218 (390)
T ss_pred ECCHHHHHHHHHHHHHcC---------CCcEEEEECCHHHhhh--h-CCCCceeEEEEeCCCCcc--ccchhhccHHHHH
Confidence 999999999998876432 2359999999875421 1 267899999987755432 1111 25789
Q ss_pred HHHHhccCCCcEEEEEeCChHHH
Q 024797 190 ANVSALLRPGGTFIGTMPDANVI 212 (262)
Q Consensus 190 ~~~~~~L~~gG~li~~~~~~~~~ 212 (262)
.+++++|+|||.+.+.+.+.++.
T Consensus 219 ~e~~RvLkpGG~l~l~TD~~~y~ 241 (390)
T PRK14121 219 NEALRVLKPGGTLELRTDSELYF 241 (390)
T ss_pred HHHHHHcCCCcEEEEEEECHHHH
Confidence 99999999999999998877654
No 59
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.60 E-value=1.9e-14 Score=115.30 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=85.6
Q ss_pred HHHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (262)
Q Consensus 73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d 150 (262)
...++..+...++.+|||+|||+|..+..+++. ..++|+++|+++++++.|++++... +...+++++.+|
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~--------~~~~~v~~~~~d 132 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL--------GYWGVVEVYHGD 132 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--------CCCCcEEEEECC
Confidence 344555555678899999999999988777653 2468999999999999999887632 223358899999
Q ss_pred ccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
+.+... ..++||+|++..++.++ . .++.+.|+|||+|++.+.
T Consensus 133 ~~~~~~-----~~~~fD~Ii~~~~~~~~----~------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 133 GKRGLE-----KHAPFDAIIVTAAASTI----P------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred cccCCc-----cCCCccEEEEccCcchh----h------HHHHHhcCcCcEEEEEEc
Confidence 876432 35789999999888765 1 367899999999988653
No 60
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.60 E-value=1.1e-14 Score=115.78 Aligned_cols=119 Identities=18% Similarity=0.301 Sum_probs=88.2
Q ss_pred cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
+...+|||+|||+|.++..++.. +...++|+|+++.+++.|+++....+ + .++.++++|+.+++.. ..
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~--------l-~ni~~i~~d~~~~~~~--~~ 83 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG--------L-KNLHVLCGDANELLDK--FF 83 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC--------C-CCEEEEccCHHHHHHh--hC
Confidence 45679999999999999988764 45579999999999999998876322 1 3699999999765310 11
Q ss_pred CCCCeeEEEEcccccccCCC----HHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797 162 DDAPFDICSCQFAMHYSWST----EARARRALANVSALLRPGGTFIGTMPDANVI 212 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~----~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~ 212 (262)
+++.+|.|++++...+.-.. .-....++++++++|+|||.+++.+.+....
T Consensus 84 ~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~ 138 (194)
T TIGR00091 84 PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLF 138 (194)
T ss_pred CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHH
Confidence 45689999988754432000 0011578999999999999999998877644
No 61
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.60 E-value=6.9e-14 Score=118.47 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=102.4
Q ss_pred CCCccccccchhHHHHHHHH--HhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHH
Q 024797 26 GDSHFLEDESTKVFARKVAD--HYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWD 103 (262)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~a~--~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~ 103 (262)
.+..++=++.-...|+++.. .|.. .+.+ ...+..+...+...+ .++.+|||+|||+|..+..++
T Consensus 17 lp~~~~yd~~G~~lf~~i~~~peYy~--tr~E----------~~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll 82 (301)
T TIGR03438 17 LPPKYFYDARGSELFEQICELPEYYP--TRTE----------AAILERHADEIAAAT--GAGCELVELGSGSSRKTRLLL 82 (301)
T ss_pred CCchhcccchHHHHHHHHHCCCcccc--HHHH----------HHHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHH
Confidence 34445445566677887755 2321 1100 133334444443333 466799999999999999887
Q ss_pred hcC--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-ccccccCCCCCeeEEEEcccccccCC
Q 024797 104 KAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKVLADDAPFDICSCQFAMHYSWS 180 (262)
Q Consensus 104 ~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~~fD~V~~~~~l~~~~~ 180 (262)
+.. ..+|+|+|+|++|++.|++++... ....++.++++|+.+. ++.... ..+...++++...++++
T Consensus 83 ~~l~~~~~~~~iDiS~~mL~~a~~~l~~~--------~p~~~v~~i~gD~~~~~~~~~~~-~~~~~~~~~~gs~~~~~-- 151 (301)
T TIGR03438 83 DALRQPARYVPIDISADALKESAAALAAD--------YPQLEVHGICADFTQPLALPPEP-AAGRRLGFFPGSTIGNF-- 151 (301)
T ss_pred HhhccCCeEEEEECCHHHHHHHHHHHHhh--------CCCceEEEEEEcccchhhhhccc-ccCCeEEEEecccccCC--
Confidence 753 357999999999999999886521 1123477889998763 331000 01133344445567776
Q ss_pred CHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 181 TEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 181 ~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
++++...+|++++++|+|||.+++.+
T Consensus 152 ~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 152 TPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 67888999999999999999999875
No 62
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.60 E-value=2.5e-14 Score=115.28 Aligned_cols=127 Identities=19% Similarity=0.193 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccc---cccccCCCCCeEEE
Q 024797 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH---HQRRKKFSFPARLI 147 (262)
Q Consensus 71 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~~~~~~~~~v~~~ 147 (262)
..+...+..+...++.+|||+|||.|+.+..++..+. .|+|||+|+.+++.+.+........ .....-...++++.
T Consensus 24 ~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~ 102 (218)
T PRK13255 24 PLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIY 102 (218)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEE
Confidence 3344444333445678999999999999999986555 7999999999999875322100000 00000113468999
Q ss_pred eCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797 148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (262)
Q Consensus 148 ~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~ 204 (262)
++|+.+++.. ..+.||+|+-..+++|+ +++.+..++..+.++|+|||.+++
T Consensus 103 ~~D~~~l~~~----~~~~fd~v~D~~~~~~l--~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 103 CGDFFALTAA----DLADVDAVYDRAALIAL--PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ECcccCCCcc----cCCCeeEEEehHhHhhC--CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999887531 23589999999999988 788899999999999999997443
No 63
>PRK06202 hypothetical protein; Provisional
Probab=99.59 E-value=1.9e-14 Score=117.61 Aligned_cols=103 Identities=20% Similarity=0.199 Sum_probs=79.5
Q ss_pred cCCCeEEEecCCCCcchHHHHhc-----CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (262)
.++.+|||+|||+|.++..++.. ...+++|+|+|++|++.|+++.. ..++.+.+.++..++.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~------------~~~~~~~~~~~~~l~~- 125 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR------------RPGVTFRQAVSDELVA- 125 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc------------cCCCeEEEEecccccc-
Confidence 46679999999999988777541 23479999999999999988754 2236666776666554
Q ss_pred cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
++++||+|+++.++||+ +.++...+++++.++++ |.+++..
T Consensus 126 ----~~~~fD~V~~~~~lhh~--~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 126 ----EGERFDVVTSNHFLHHL--DDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred ----cCCCccEEEECCeeecC--ChHHHHHHHHHHHHhcC--eeEEEec
Confidence 46799999999999998 55556789999999998 4455444
No 64
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.58 E-value=4.6e-14 Score=109.81 Aligned_cols=118 Identities=21% Similarity=0.319 Sum_probs=86.7
Q ss_pred HHHHHhccCCCeEEEecCCCCcchHHHHhcCCC-eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (262)
Q Consensus 76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (262)
++..+...++.+|||+|||+|.++..+++.... +|+++|+++.+++.+++++... +... ++++..|+.+.
T Consensus 23 L~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n--------~~~~-v~~~~~d~~~~ 93 (170)
T PF05175_consen 23 LLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN--------GLEN-VEVVQSDLFEA 93 (170)
T ss_dssp HHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT--------TCTT-EEEEESSTTTT
T ss_pred HHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc--------Cccc-ccccccccccc
Confidence 333344447889999999999999988775443 6999999999999999988732 2222 88999998664
Q ss_pred ccccccCCCCCeeEEEEcccccccCC-CHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 155 HLDKVLADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
. ++++||+|+++-.++.-.. .......++..+.+.|+|||.+++....
T Consensus 94 ~------~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 94 L------PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp C------CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred c------cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 2 4689999999876653311 1235788999999999999999776543
No 65
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.58 E-value=1.6e-14 Score=130.06 Aligned_cols=110 Identities=19% Similarity=0.311 Sum_probs=88.4
Q ss_pred HHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc--c
Q 024797 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE--V 154 (262)
Q Consensus 77 l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~--~ 154 (262)
+..+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.+++... ...++.++++|+.. +
T Consensus 30 l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~-----------~~~~i~~~~~d~~~~~~ 97 (475)
T PLN02336 30 LSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESING-----------HYKNVKFMCADVTSPDL 97 (475)
T ss_pred HhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhc-----------cCCceEEEEeccccccc
Confidence 33333446779999999999999988765 4589999999999998765432 13468899999864 3
Q ss_pred ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
++ ++++||+|++.++++|+ +.+....+++++.++|+|||++++.
T Consensus 98 ~~-----~~~~fD~I~~~~~l~~l--~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 98 NI-----SDGSVDLIFSNWLLMYL--SDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CC-----CCCCEEEEehhhhHHhC--CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 33 56899999999999998 5566889999999999999999885
No 66
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.57 E-value=5.6e-14 Score=114.98 Aligned_cols=146 Identities=17% Similarity=0.197 Sum_probs=102.5
Q ss_pred hhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHH-HHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEe
Q 024797 36 TKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLV-QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGID 114 (262)
Q Consensus 36 ~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD 114 (262)
....++.+++.|++.....-. ...+.......+. .....++.+|||+|||+|.++..+++.. ..++++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD 77 (233)
T PRK05134 8 EIAKFSALAARWWDPNGEFKP---------LHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLG-ADVTGID 77 (233)
T ss_pred HHHHHHHHHHHHhccCCCcHH---------HHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEc
Confidence 445778888888643321111 1222222222222 2224568899999999999888776643 4799999
Q ss_pred CChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHh
Q 024797 115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA 194 (262)
Q Consensus 115 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~ 194 (262)
+++.+++.++++.... ...+.+...++...+.. ..++||+|++..+++|. .+...+++.+.+
T Consensus 78 ~s~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~~~~----~~~~fD~Ii~~~~l~~~----~~~~~~l~~~~~ 139 (233)
T PRK05134 78 ASEENIEVARLHALES----------GLKIDYRQTTAEELAAE----HPGQFDVVTCMEMLEHV----PDPASFVRACAK 139 (233)
T ss_pred CCHHHHHHHHHHHHHc----------CCceEEEecCHHHhhhh----cCCCccEEEEhhHhhcc----CCHHHHHHHHHH
Confidence 9999999999876521 22467778887665421 35789999999999887 567789999999
Q ss_pred ccCCCcEEEEEeCCh
Q 024797 195 LLRPGGTFIGTMPDA 209 (262)
Q Consensus 195 ~L~~gG~li~~~~~~ 209 (262)
+|+|||.++++.++.
T Consensus 140 ~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 140 LVKPGGLVFFSTLNR 154 (233)
T ss_pred HcCCCcEEEEEecCC
Confidence 999999999987653
No 67
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.57 E-value=5.5e-14 Score=113.92 Aligned_cols=114 Identities=23% Similarity=0.281 Sum_probs=88.0
Q ss_pred HHHHHHHHHh--ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC
Q 024797 72 WIKSVLVQLY--ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (262)
Q Consensus 72 ~~~~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~ 149 (262)
+...++..+. ..++.+|||+|||+|.++..++.. ...++|+|+|++|++.|+++.... ....++.+.++
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~--------~~~~~i~~~~~ 111 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGR--------DVAGNVEFEVN 111 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhc--------CCCCceEEEEC
Confidence 3444444443 346789999999999999888764 448999999999999999987632 11236889999
Q ss_pred cccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (262)
Q Consensus 150 d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~ 204 (262)
|+...+ ++||+|++..+++|+ +.++...++.++.+++++++.+.+
T Consensus 112 d~~~~~--------~~fD~ii~~~~l~~~--~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 112 DLLSLC--------GEFDIVVCMDVLIHY--PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred ChhhCC--------CCcCEEEEhhHHHhC--CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 987642 689999999999887 566788899999999987665554
No 68
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.57 E-value=5.6e-14 Score=113.10 Aligned_cols=111 Identities=19% Similarity=0.146 Sum_probs=85.3
Q ss_pred HHHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (262)
Q Consensus 73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d 150 (262)
...++..+...++.+|||+|||+|..+..+++. ..++|+++|+++++++.|++++...+ ..++.++++|
T Consensus 65 ~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g---------~~~v~~~~gd 135 (212)
T PRK13942 65 VAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG---------YDNVEVIVGD 135 (212)
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCeEEEECC
Confidence 344555556678999999999999988777653 34689999999999999999887432 2358999999
Q ss_pred ccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
+..... +.++||+|++..+..++ ...+.+.|+|||++++...
T Consensus 136 ~~~~~~-----~~~~fD~I~~~~~~~~~----------~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 136 GTLGYE-----ENAPYDRIYVTAAGPDI----------PKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred cccCCC-----cCCCcCEEEECCCcccc----------hHHHHHhhCCCcEEEEEEc
Confidence 876543 46789999998876543 2356778999999988653
No 69
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.57 E-value=1.9e-14 Score=104.94 Aligned_cols=113 Identities=25% Similarity=0.342 Sum_probs=85.8
Q ss_pred CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (262)
|.+|||+|||+|.++..+++....+++|+|+++..++.++.++... ....+++++++|+..... ..+++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~--------~~~~~~~~~~~D~~~~~~---~~~~~ 69 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRN--------GLDDRVEVIVGDARDLPE---PLPDG 69 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHC--------TTTTTEEEEESHHHHHHH---TCTTT
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHc--------cCCceEEEEECchhhchh---hccCc
Confidence 4689999999999999887766568999999999999999988732 334569999999977651 01578
Q ss_pred CeeEEEEcccccccCCC----HHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 165 PFDICSCQFAMHYSWST----EARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 165 ~fD~V~~~~~l~~~~~~----~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
+||+|+++-.+...... ......+++++.++|+|||.+++.+++
T Consensus 70 ~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 70 KFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp -EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred eeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999998765432111 124578899999999999999987763
No 70
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.56 E-value=7.3e-14 Score=112.84 Aligned_cols=111 Identities=19% Similarity=0.142 Sum_probs=85.1
Q ss_pred HHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (262)
Q Consensus 74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 151 (262)
..++..+...++.+|||+|||+|..+..+++. ..++|+++|+++++++.|++++...+. .+++++++|+
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~---------~~v~~~~~d~ 137 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL---------DNVIVIVGDG 137 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC---------CCeEEEECCc
Confidence 44555556678899999999999999887764 235699999999999999998874322 3589999998
Q ss_pred cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
..... ...+||+|++.....++ ...+.+.|+|||++++.+..
T Consensus 138 ~~~~~-----~~~~fD~Ii~~~~~~~~----------~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 138 TQGWE-----PLAPYDRIYVTAAGPKI----------PEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred ccCCc-----ccCCCCEEEEcCCcccc----------cHHHHHhcCcCcEEEEEEcC
Confidence 76432 34689999988766544 24578889999999986543
No 71
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.55 E-value=2.6e-13 Score=107.30 Aligned_cols=108 Identities=17% Similarity=0.093 Sum_probs=82.7
Q ss_pred HHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797 77 LVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (262)
Q Consensus 77 l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 155 (262)
+..+...++.+|||+|||+|.++..+++. +..+++++|+|+.+++.++++....+ ..+++++++|+.. +
T Consensus 24 ~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~---------~~~i~~~~~d~~~-~ 93 (187)
T PRK08287 24 LSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG---------CGNIDIIPGEAPI-E 93 (187)
T ss_pred HHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC---------CCCeEEEecCchh-h
Confidence 34445567889999999999999888764 44689999999999999998775321 1348888888642 2
Q ss_pred cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
+ .++||+|++.....+ ...++..+.++|+|||.+++...
T Consensus 94 ~------~~~~D~v~~~~~~~~-------~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 94 L------PGKADAIFIGGSGGN-------LTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred c------CcCCCEEEECCCccC-------HHHHHHHHHHhcCCCeEEEEEEe
Confidence 2 357999998765543 35678999999999999988754
No 72
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.55 E-value=2.9e-15 Score=117.17 Aligned_cols=138 Identities=17% Similarity=0.232 Sum_probs=99.9
Q ss_pred HHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCCh
Q 024797 38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE 117 (262)
Q Consensus 38 ~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~ 117 (262)
..||+.++.|+......+. ..+-..+..++......+-.++||+|||||-.+..+ +....+++|+|+|+
T Consensus 89 ~LFD~~Ae~Fd~~LVdkL~----------Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~l-R~~a~~ltGvDiS~ 157 (287)
T COG4976 89 TLFDQYAERFDHILVDKLG----------YSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEAL-RDMADRLTGVDISE 157 (287)
T ss_pred HHHHHHHHHHHHHHHHHhc----------CccHHHHHHHHHhccCCccceeeecccCcCcccHhH-HHHHhhccCCchhH
Confidence 4899999999865433322 112223444555555555679999999999877766 44455799999999
Q ss_pred hHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccC
Q 024797 118 GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLR 197 (262)
Q Consensus 118 ~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~ 197 (262)
+|+++|.++-- --...++++..+... ..+.+||+|+...++.|+ -..+.++.-+...|+
T Consensus 158 nMl~kA~eKg~--------------YD~L~~Aea~~Fl~~---~~~er~DLi~AaDVl~Yl----G~Le~~~~~aa~~L~ 216 (287)
T COG4976 158 NMLAKAHEKGL--------------YDTLYVAEAVLFLED---LTQERFDLIVAADVLPYL----GALEGLFAGAAGLLA 216 (287)
T ss_pred HHHHHHHhccc--------------hHHHHHHHHHHHhhh---ccCCcccchhhhhHHHhh----cchhhHHHHHHHhcC
Confidence 99999988632 122345554432210 046889999999999998 778999999999999
Q ss_pred CCcEEEEEeC
Q 024797 198 PGGTFIGTMP 207 (262)
Q Consensus 198 ~gG~li~~~~ 207 (262)
|||.+.|++.
T Consensus 217 ~gGlfaFSvE 226 (287)
T COG4976 217 PGGLFAFSVE 226 (287)
T ss_pred CCceEEEEec
Confidence 9999999974
No 73
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.54 E-value=3.3e-13 Score=107.65 Aligned_cols=117 Identities=20% Similarity=0.267 Sum_probs=89.2
Q ss_pred HHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797 77 LVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (262)
Q Consensus 77 l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (262)
+..+...++.+|||+|||+|.++..+++. ..++|+++|+++.+++.++++.... +...++.++++|+.+.
T Consensus 33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~--------g~~~~v~~~~~d~~~~ 104 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF--------GVLNNIVLIKGEAPEI 104 (198)
T ss_pred HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh--------CCCCCeEEEEechhhh
Confidence 34555678899999999999998887653 4468999999999999999887632 2234688899998653
Q ss_pred ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (262)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~ 212 (262)
... ..+.||+|++.... ..+..+++.+.++|+|||.+++.....+.+
T Consensus 105 l~~----~~~~~D~V~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 151 (198)
T PRK00377 105 LFT----INEKFDRIFIGGGS-------EKLKEIISASWEIIKKGGRIVIDAILLETV 151 (198)
T ss_pred Hhh----cCCCCCEEEECCCc-------ccHHHHHHHHHHHcCCCcEEEEEeecHHHH
Confidence 210 24689999986532 346788999999999999999887766544
No 74
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.54 E-value=1.1e-13 Score=108.72 Aligned_cols=109 Identities=16% Similarity=0.165 Sum_probs=83.9
Q ss_pred ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
..++.+|||+|||+|.++..++.... +++|+|+|+.+++.++++.... ..+++++++|+.+..
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~----------~~~~~~~~~d~~~~~------ 79 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLN----------NVGLDVVMTDLFKGV------ 79 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHc----------CCceEEEEccccccc------
Confidence 34667899999999999888876554 8999999999999999987521 234788899976642
Q ss_pred CCCCeeEEEEcccccccCCC-----------------HHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 162 DDAPFDICSCQFAMHYSWST-----------------EARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~-----------------~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
.++||+|+++..+++.... ......++.++.++|+|||.+++..+.
T Consensus 80 -~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 80 -RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred -CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 3589999998877654110 112567899999999999999887643
No 75
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.53 E-value=2.7e-13 Score=117.05 Aligned_cols=122 Identities=13% Similarity=0.134 Sum_probs=88.4
Q ss_pred HHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (262)
Q Consensus 74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 152 (262)
+.++..+....+.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++...+.. ...++++...|+.
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~------~~~~v~~~~~D~l 291 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE------ALDRCEFMINNAL 291 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc------cCceEEEEEcccc
Confidence 33444443334569999999999999888764 4568999999999999999987532110 0235788888875
Q ss_pred ccccccccCCCCCeeEEEEcccccccC-CCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 153 EVHLDKVLADDAPFDICSCQFAMHYSW-STEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~-~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
... +..+||+|+|+-.+|... .+.....+++..+.++|+|||.+++...
T Consensus 292 ~~~------~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 292 SGV------EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred ccC------CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 432 346899999987765331 1334467899999999999999988753
No 76
>PRK14967 putative methyltransferase; Provisional
Probab=99.53 E-value=2.3e-13 Score=110.54 Aligned_cols=126 Identities=21% Similarity=0.253 Sum_probs=88.9
Q ss_pred HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (262)
Q Consensus 76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 155 (262)
.+......++.+|||+|||+|.++..++.....+++++|+|+.+++.+++++... ..++.++++|+...
T Consensus 28 ~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~----------~~~~~~~~~d~~~~- 96 (223)
T PRK14967 28 ALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA----------GVDVDVRRGDWARA- 96 (223)
T ss_pred HHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh----------CCeeEEEECchhhh-
Confidence 3333344677899999999999888887655558999999999999999877521 22477888887653
Q ss_pred cccccCCCCCeeEEEEcccccccC-----------------CCHHHHHHHHHHHHhccCCCcEEEEEeCC---hHHHHHH
Q 024797 156 LDKVLADDAPFDICSCQFAMHYSW-----------------STEARARRALANVSALLRPGGTFIGTMPD---ANVIIKK 215 (262)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~-----------------~~~~~~~~~l~~~~~~L~~gG~li~~~~~---~~~~~~~ 215 (262)
. ++++||+|+++....... +.......++.++.++|+|||.+++.... .......
T Consensus 97 ~-----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~ 171 (223)
T PRK14967 97 V-----EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTR 171 (223)
T ss_pred c-----cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHH
Confidence 2 457899999975332110 01123567889999999999999886543 3344444
Q ss_pred Hh
Q 024797 216 LR 217 (262)
Q Consensus 216 ~~ 217 (262)
+.
T Consensus 172 l~ 173 (223)
T PRK14967 172 LS 173 (223)
T ss_pred HH
Confidence 43
No 77
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.52 E-value=2.7e-13 Score=110.60 Aligned_cols=100 Identities=24% Similarity=0.253 Sum_probs=78.2
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
.++.+|||+|||+|.++..+++... .|+|+|+|+.|++.|+++.... +...++.+.++|+.. .
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~--------~~~~~i~~~~~d~~~--------~ 124 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEA--------GLAGNITFEVGDLES--------L 124 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhc--------CCccCcEEEEcCchh--------c
Confidence 4678999999999999888876543 6999999999999999987632 122368888888432 3
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcE
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT 201 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~ 201 (262)
+++||+|++..+++|+ +.+....+++++.+.+++++.
T Consensus 125 ~~~fD~v~~~~~l~~~--~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 125 LGRFDTVVCLDVLIHY--PQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred cCCcCEEEEcchhhcC--CHHHHHHHHHHHHhhcCCeEE
Confidence 5789999999999887 566788899999887754443
No 78
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.52 E-value=2e-13 Score=116.13 Aligned_cols=113 Identities=14% Similarity=0.040 Sum_probs=89.4
Q ss_pred HHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (262)
Q Consensus 76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (262)
++......++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++++.+. +...+++++.+|+.+.
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--------gl~~rv~~~~~d~~~~ 211 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK--------GVADRMRGIAVDIYKE 211 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC--------CccceEEEEecCccCC
Confidence 333344456789999999999999888774 4568999998 78999999887643 3345699999998765
Q ss_pred ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
++ + .+|+|++..++|++ +.+....++++++++|+|||++++..
T Consensus 212 ~~-----~--~~D~v~~~~~lh~~--~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 212 SY-----P--EADAVLFCRILYSA--NEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred CC-----C--CCCEEEeEhhhhcC--ChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 54 2 36999999988876 56667889999999999999998763
No 79
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.52 E-value=7.1e-13 Score=112.18 Aligned_cols=109 Identities=17% Similarity=0.232 Sum_probs=78.4
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
++.+|||+|||+|.++..+++.+ ..|+|+|+|+.|++.|+++....... .....++.|.++|+..+ +
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~----~~~~~~~~f~~~Dl~~l--------~ 210 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAA----LPPEVLPKFEANDLESL--------S 210 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccc----cccccceEEEEcchhhc--------C
Confidence 57799999999999998887653 48999999999999999987632110 00123477888887542 4
Q ss_pred CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
++||+|+|..+++|+ +.+....+++.+.+ +.+||.++...++
T Consensus 211 ~~fD~Vv~~~vL~H~--p~~~~~~ll~~l~~-l~~g~liIs~~p~ 252 (315)
T PLN02585 211 GKYDTVTCLDVLIHY--PQDKADGMIAHLAS-LAEKRLIISFAPK 252 (315)
T ss_pred CCcCEEEEcCEEEec--CHHHHHHHHHHHHh-hcCCEEEEEeCCc
Confidence 789999999999887 44555667777775 4566655543344
No 80
>PRK04266 fibrillarin; Provisional
Probab=99.51 E-value=3e-13 Score=109.44 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=80.2
Q ss_pred HHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797 79 QLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (262)
Q Consensus 79 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (262)
.+...++.+|||+|||+|..+..++.. +.+.|+|+|+++.|++.+.+++.+ ..++.++.+|+......
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-----------~~nv~~i~~D~~~~~~~ 135 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-----------RKNIIPILADARKPERY 135 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-----------cCCcEEEECCCCCcchh
Confidence 355678899999999999999888763 346899999999999987766542 13588899998652100
Q ss_pred cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
.. -.++||+|++... .+.....++.++.++|||||.++++++
T Consensus 136 ~~--l~~~~D~i~~d~~------~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 136 AH--VVEKVDVIYQDVA------QPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred hh--ccccCCEEEECCC------ChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 00 1356999986432 122345678999999999999999644
No 81
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.51 E-value=2.9e-13 Score=108.78 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCc-cc--cccccCCCCCeE
Q 024797 69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA-DH--HQRRKKFSFPAR 145 (262)
Q Consensus 69 ~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~--~~~~~~~~~~v~ 145 (262)
.+.++...+..+...++.+||+.|||.|..+..|+..+. .|+|+|+|+.+++.+.+...... .. .....-....++
T Consensus 28 pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 28 PNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred CCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 334444444444445678999999999999999987666 69999999999999866321100 00 000001134689
Q ss_pred EEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 146 LICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 146 ~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
+.++|+.+++... ...+.||+|+-..+++++ +++.+.+..+.+.++|+|||.+++.+
T Consensus 107 ~~~gD~f~l~~~~--~~~~~fD~VyDra~~~Al--pp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 107 IYVADIFNLPKIA--NNLPVFDIWYDRGAYIAL--PNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred EEEccCcCCCccc--cccCCcCeeeeehhHhcC--CHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 9999999885310 013689999999999988 88889999999999999999976654
No 82
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.51 E-value=1.3e-13 Score=113.48 Aligned_cols=110 Identities=17% Similarity=0.123 Sum_probs=82.1
Q ss_pred HHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797 79 QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (262)
Q Consensus 79 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (262)
.+..-.|.+|||||||+|.++..++..+...|+|+|.+.....+......-.+ ....+..+...+++++
T Consensus 110 ~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg--------~~~~~~~lplgvE~Lp--- 178 (315)
T PF08003_consen 110 HLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLG--------QDPPVFELPLGVEDLP--- 178 (315)
T ss_pred hhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhC--------CCccEEEcCcchhhcc---
Confidence 33345789999999999999999988888889999999887666433221100 0112233323445554
Q ss_pred ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
..+.||+|+|.+++.|. .++...|.+++..|++||.+|+.+
T Consensus 179 ---~~~~FDtVF~MGVLYHr----r~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 179 ---NLGAFDTVFSMGVLYHR----RSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred ---ccCCcCEEEEeeehhcc----CCHHHHHHHHHHhhCCCCEEEEEE
Confidence 25789999999999998 778899999999999999999764
No 83
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.50 E-value=2.2e-12 Score=99.11 Aligned_cols=121 Identities=21% Similarity=0.255 Sum_probs=97.2
Q ss_pred HHHHHhccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797 76 VLVQLYARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (262)
Q Consensus 76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (262)
.+..+.+.++++++|||||+|..+..++. .+.++++++|-++++++..+++....+ ..++.++.+++-+.
T Consensus 26 ~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg---------~~n~~vv~g~Ap~~ 96 (187)
T COG2242 26 TLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG---------VDNLEVVEGDAPEA 96 (187)
T ss_pred HHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC---------CCcEEEEeccchHh
Confidence 45567788999999999999999999975 467789999999999999999987544 34599999998664
Q ss_pred ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhh
Q 024797 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218 (262)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~ 218 (262)
-. ...++|.|++.+. - ....+++.+...|+|||++++.....+.....+..
T Consensus 97 L~-----~~~~~daiFIGGg-~-------~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~ 147 (187)
T COG2242 97 LP-----DLPSPDAIFIGGG-G-------NIEEILEAAWERLKPGGRLVANAITLETLAKALEA 147 (187)
T ss_pred hc-----CCCCCCEEEECCC-C-------CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHH
Confidence 32 2237999999887 3 25789999999999999999988776655444433
No 84
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.50 E-value=1e-12 Score=102.47 Aligned_cols=114 Identities=19% Similarity=0.256 Sum_probs=85.6
Q ss_pred HHHHHHHhccC--CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797 74 KSVLVQLYARR--GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (262)
Q Consensus 74 ~~~l~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 151 (262)
.+.+..+..+. +.-|||||||+|..+..+...+ -.++|+|+|+.|++.|.++.-+ -.++.+|+
T Consensus 38 eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~e--------------gdlil~DM 102 (270)
T KOG1541|consen 38 ERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELE--------------GDLILCDM 102 (270)
T ss_pred HHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhh--------------cCeeeeec
Confidence 34455444444 6689999999996666654333 4699999999999999874321 45778887
Q ss_pred -cccccccccCCCCCeeEEEEcccccccCC-------CHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 152 -YEVHLDKVLADDAPFDICSCQFAMHYSWS-------TEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 152 -~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-------~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
+-+|+ .++.||.+|+..++++++. +...+..++..++.+|++|+..++-..
T Consensus 103 G~Glpf-----rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 103 GEGLPF-----RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred CCCCCC-----CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 45666 7899999999998887753 334456788889999999999998874
No 85
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.49 E-value=5.6e-13 Score=108.36 Aligned_cols=108 Identities=21% Similarity=0.332 Sum_probs=87.1
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
.+.+|||+|||+|.++..+++.. ..++|+|+++.+++.+++++...+ ..++.+.+.|+.+.+.. ..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~---------~~~~~~~~~d~~~~~~~----~~ 110 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKDP---------LLKIEYRCTSVEDLAEK----GA 110 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHcC---------CCceEEEeCCHHHhhcC----CC
Confidence 47799999999999888776644 369999999999999998775211 11478888888776541 23
Q ss_pred CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 209 (262)
++||+|++..+++|. .++..++.++.++|+|||.+++..++.
T Consensus 111 ~~~D~i~~~~~l~~~----~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 111 KSFDVVTCMEVLEHV----PDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred CCccEEEehhHHHhC----CCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 789999999999987 567889999999999999999887654
No 86
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.49 E-value=4.3e-13 Score=112.97 Aligned_cols=105 Identities=21% Similarity=0.177 Sum_probs=80.3
Q ss_pred ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
..++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|+++.... +....+.+...+... .
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n--------~~~~~~~~~~~~~~~--~----- 221 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELN--------QVSDRLQVKLIYLEQ--P----- 221 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc--------CCCcceEEEeccccc--c-----
Confidence 3577899999999999888777666668999999999999999987632 223345556655322 1
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
.+++||+|+++... .....++.++.++|+|||.++++...
T Consensus 222 ~~~~fDlVvan~~~-------~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 222 IEGKADVIVANILA-------EVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred cCCCceEEEEecCH-------HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 35789999987643 34567899999999999999997653
No 87
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.48 E-value=5.8e-13 Score=105.32 Aligned_cols=130 Identities=18% Similarity=0.246 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHHHhcc---CCCeEEEecCCCCcchHHHHhc-CC--CeEEEEeCChhHHHHHHHHhccCccccccccCC
Q 024797 67 KKLNNWIKSVLVQLYAR---RGDVVLDLACGKGGDLIKWDKA-KI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF 140 (262)
Q Consensus 67 ~~~~~~~~~~l~~~~~~---~~~~vLDiGcG~G~~~~~l~~~-~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~ 140 (262)
-..++|+..-...+..- ...+|||+|||.|..+..+++. +. -.++++|.|+.+++..++.... .
T Consensus 51 fkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~----------~ 120 (264)
T KOG2361|consen 51 FKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY----------D 120 (264)
T ss_pred cchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc----------c
Confidence 44556765555544432 2237999999999999888873 22 3699999999999999987542 1
Q ss_pred CCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797 141 SFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 141 ~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 209 (262)
..++...+.|+....+.... +.+++|+|++.+++.-+ .++....++.+++++|||||.|++.....
T Consensus 121 e~~~~afv~Dlt~~~~~~~~-~~~svD~it~IFvLSAi--~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 121 ESRVEAFVWDLTSPSLKEPP-EEGSVDIITLIFVLSAI--HPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred hhhhcccceeccchhccCCC-CcCccceEEEEEEEecc--ChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 34566677777654432222 67899999999999877 77889999999999999999999976544
No 88
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.48 E-value=3.8e-13 Score=107.95 Aligned_cols=109 Identities=20% Similarity=0.226 Sum_probs=77.7
Q ss_pred ccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc-
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK- 158 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~- 158 (262)
..++.+|||+|||+|.++..+++. ..+.|+|+|+++ |. . ..++.++++|+.+.+...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~--------------~~~v~~i~~D~~~~~~~~~ 108 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----P--------------IVGVDFLQGDFRDELVLKA 108 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----C--------------CCCcEEEecCCCChHHHHH
Confidence 367889999999999998888764 345899999998 20 1 124889999998754100
Q ss_pred c--cCCCCCeeEEEEcccccccCCCHHH-------HHHHHHHHHhccCCCcEEEEEeCChH
Q 024797 159 V--LADDAPFDICSCQFAMHYSWSTEAR-------ARRALANVSALLRPGGTFIGTMPDAN 210 (262)
Q Consensus 159 ~--~~~~~~fD~V~~~~~l~~~~~~~~~-------~~~~l~~~~~~L~~gG~li~~~~~~~ 210 (262)
. ...+++||+|+++.+.++.-....+ ...++.++.++|+|||.+++.+...+
T Consensus 109 i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 109 LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred HHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 0 0146789999998776543111111 25689999999999999999776543
No 89
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.48 E-value=2e-12 Score=108.49 Aligned_cols=114 Identities=18% Similarity=0.178 Sum_probs=85.0
Q ss_pred cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
.++.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|++++... +...++.++++|+.+. +
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~--------~~~~~i~~~~~D~~~~-~----- 185 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH--------GLEDRVTLIQSDLFAA-L----- 185 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCcEEEEECchhhc-c-----
Confidence 34578999999999999988764 4458999999999999999987632 2234689999998542 2
Q ss_pred CCCCeeEEEEcccc------ccc-----C----------CCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797 162 DDAPFDICSCQFAM------HYS-----W----------STEARARRALANVSALLRPGGTFIGTMPDAN 210 (262)
Q Consensus 162 ~~~~fD~V~~~~~l------~~~-----~----------~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~ 210 (262)
+.++||+|+++--. .++ . +..+....++..+.++|+|||.+++.+.+..
T Consensus 186 ~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~ 255 (284)
T TIGR03533 186 PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM 255 (284)
T ss_pred CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH
Confidence 34689999987311 110 0 0123457789999999999999999987643
No 90
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.48 E-value=9.7e-13 Score=112.88 Aligned_cols=115 Identities=16% Similarity=0.213 Sum_probs=86.2
Q ss_pred HHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (262)
Q Consensus 76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (262)
++..+......+|||+|||+|.++..+++. +..+++++|+|+.|++.|++++... ....+++..|+...
T Consensus 188 Ll~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n----------~l~~~~~~~D~~~~ 257 (342)
T PRK09489 188 LLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN----------GLEGEVFASNVFSD 257 (342)
T ss_pred HHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----------CCCCEEEEcccccc
Confidence 333333334568999999999998888764 4457999999999999999887632 12246677776542
Q ss_pred ccccccCCCCCeeEEEEcccccccCC-CHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 155 HLDKVLADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
..++||+|+++..+|.... .......+++++.++|+|||.+++...
T Consensus 258 -------~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 258 -------IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred -------cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 2478999999988875322 245678999999999999999988764
No 91
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.47 E-value=4.9e-13 Score=114.81 Aligned_cols=118 Identities=22% Similarity=0.231 Sum_probs=89.1
Q ss_pred HhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (262)
Q Consensus 80 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (262)
....++.+|||+|||+|.++...+.. ...++|+|+++.|+..|++++...+. . ++.+.++|+.+++.
T Consensus 178 ~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~--------~-~i~~~~~D~~~l~~--- 244 (329)
T TIGR01177 178 ARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGI--------E-DFFVKRGDATKLPL--- 244 (329)
T ss_pred hCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCC--------C-CCeEEecchhcCCc---
Confidence 34567889999999999988776543 45799999999999999988764322 2 27889999998876
Q ss_pred cCCCCCeeEEEEccccccc--C---CCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797 160 LADDAPFDICSCQFAMHYS--W---STEARARRALANVSALLRPGGTFIGTMPDANVI 212 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~--~---~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~ 212 (262)
++++||+|+++..+... . ........++.++.++|+|||++++.+++...+
T Consensus 245 --~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~ 300 (329)
T TIGR01177 245 --SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDL 300 (329)
T ss_pred --ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCH
Confidence 46789999997432110 0 012346889999999999999999888765433
No 92
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.47 E-value=2.1e-12 Score=102.83 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=84.0
Q ss_pred HHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-
Q 024797 77 LVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV- 154 (262)
Q Consensus 77 l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~- 154 (262)
+..+...++.+|||+|||+|.++..++.. +..+++++|+|+++++.+++++...+ ..+++++++|+.+.
T Consensus 33 ~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~---------~~~v~~~~~d~~~~~ 103 (196)
T PRK07402 33 ISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG---------VKNVEVIEGSAPECL 103 (196)
T ss_pred HHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---------CCCeEEEECchHHHH
Confidence 33444567889999999999998888653 45689999999999999999876322 13588999998542
Q ss_pred ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (262)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~ 212 (262)
+. ....+|.+++... .....++.++.++|+|||.+++..++.+.+
T Consensus 104 ~~-----~~~~~d~v~~~~~--------~~~~~~l~~~~~~LkpgG~li~~~~~~~~~ 148 (196)
T PRK07402 104 AQ-----LAPAPDRVCIEGG--------RPIKEILQAVWQYLKPGGRLVATASSLEGL 148 (196)
T ss_pred hh-----CCCCCCEEEEECC--------cCHHHHHHHHHHhcCCCeEEEEEeecHHHH
Confidence 11 1234577655321 235788999999999999999998887654
No 93
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.46 E-value=1.8e-12 Score=102.07 Aligned_cols=106 Identities=14% Similarity=0.146 Sum_probs=80.9
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
...+.||+|||-|+.+..++...+..|-.+|..+..++.|++.+... ...-.++.+..++++.. +.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~---------~~~v~~~~~~gLQ~f~P-----~~ 120 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD---------NPRVGEFYCVGLQDFTP-----EE 120 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG---------GCCEEEEEES-GGG---------T
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc---------CCCcceEEecCHhhccC-----CC
Confidence 35689999999999999887777889999999999999999877621 12235678888877653 45
Q ss_pred CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
++||+|.+.+++.|+ +.++..++|+++...|+|+|.+++.
T Consensus 121 ~~YDlIW~QW~lghL--TD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 121 GKYDLIWIQWCLGHL--TDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp T-EEEEEEES-GGGS---HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcEeEEEehHhhccC--CHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 799999999999999 8899999999999999999999984
No 94
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.46 E-value=1.3e-12 Score=105.42 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=81.2
Q ss_pred HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (262)
Q Consensus 76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 155 (262)
++..+...++.+|||+|||+|..+..++.. ..+++++|+++++++.+++++...+ ..++++.++|+....
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~---------~~~v~~~~~d~~~~~ 139 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLG---------LHNVSVRHGDGWKGW 139 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCC---------CCceEEEECCcccCC
Confidence 444455678899999999999888766544 3589999999999999999886432 124889999975432
Q ss_pred cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
. +.++||+|++...++++ ...+.+.|+|||.+++.+.
T Consensus 140 ~-----~~~~fD~I~~~~~~~~~----------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 P-----AYAPFDRILVTAAAPEI----------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred C-----cCCCcCEEEEccCchhh----------hHHHHHhcCCCcEEEEEEc
Confidence 1 34789999998866543 2457789999999998765
No 95
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.46 E-value=8.6e-13 Score=104.92 Aligned_cols=102 Identities=25% Similarity=0.336 Sum_probs=79.2
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc-cc-ccccc
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VH-LDKVL 160 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~ 160 (262)
.++.+|||+|||+|.++..++......++|+|+|+++++.+++. +++++++|+.+ ++ +
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----------------~~~~~~~d~~~~l~~~---- 71 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----------------GVNVIQGDLDEGLEAF---- 71 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----------------CCeEEEEEhhhccccc----
Confidence 46789999999999998887655445689999999999998642 26778888765 32 3
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~ 212 (262)
++++||+|+++.+++|+ .++..+++++.+++ |.+++++|+...+
T Consensus 72 -~~~sfD~Vi~~~~l~~~----~d~~~~l~e~~r~~---~~~ii~~p~~~~~ 115 (194)
T TIGR02081 72 -PDKSFDYVILSQTLQAT----RNPEEILDEMLRVG---RHAIVSFPNFGYW 115 (194)
T ss_pred -CCCCcCEEEEhhHhHcC----cCHHHHHHHHHHhC---CeEEEEcCChhHH
Confidence 56789999999999998 66778888887764 4567777876544
No 96
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.43 E-value=5.9e-12 Score=106.71 Aligned_cols=111 Identities=18% Similarity=0.195 Sum_probs=83.4
Q ss_pred CeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797 86 DVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (262)
Q Consensus 86 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (262)
.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|++++... +...+++++++|+.+. + +.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~--------~l~~~i~~~~~D~~~~-l-----~~~ 200 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH--------GLEDRVTLIESDLFAA-L-----PGR 200 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--------CCCCcEEEEECchhhh-C-----CCC
Confidence 68999999999999888764 4568999999999999999988632 2234689999998552 2 346
Q ss_pred CeeEEEEcccc-------------cccC--------CCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797 165 PFDICSCQFAM-------------HYSW--------STEARARRALANVSALLRPGGTFIGTMPDAN 210 (262)
Q Consensus 165 ~fD~V~~~~~l-------------~~~~--------~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~ 210 (262)
+||+|+++--. .|-. +..+....++..+.++|+|||.+++.+.+..
T Consensus 201 ~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~ 267 (307)
T PRK11805 201 RYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSR 267 (307)
T ss_pred CccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCH
Confidence 89999987311 1100 0123457889999999999999999886543
No 97
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1e-12 Score=108.89 Aligned_cols=103 Identities=25% Similarity=0.370 Sum_probs=78.2
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
.++.+|||+|||+|.++...++.+..+++|+|+++.+++.|+++....+. ...+.....+....+ .
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v--------~~~~~~~~~~~~~~~------~ 226 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGV--------ELLVQAKGFLLLEVP------E 226 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCC--------chhhhcccccchhhc------c
Confidence 48899999999999999988888888999999999999999998873221 111222223322222 3
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
.++||+|+++- +- +-...+...+.+.|+|||+++++-
T Consensus 227 ~~~~DvIVANI-LA------~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 227 NGPFDVIVANI-LA------EVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred cCcccEEEehh-hH------HHHHHHHHHHHHHcCCCceEEEEe
Confidence 46999999876 32 336788899999999999999874
No 98
>PRK04457 spermidine synthase; Provisional
Probab=99.43 E-value=3e-12 Score=106.17 Aligned_cols=115 Identities=12% Similarity=0.011 Sum_probs=83.3
Q ss_pred cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
.++.+|||+|||+|.++..+++. +..+++++|+++++++.|++.+.. .....+++++++|+.+.-..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~--------~~~~~rv~v~~~Da~~~l~~---- 132 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL--------PENGERFEVIEADGAEYIAV---- 132 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCC--------CCCCCceEEEECCHHHHHHh----
Confidence 45678999999999988877663 455799999999999999998752 11235789999998654211
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 209 (262)
..++||+|++...-....+..-....+++.+.+.|+|||++++...+.
T Consensus 133 ~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 133 HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 246899999864211110111123689999999999999999976543
No 99
>PRK14968 putative methyltransferase; Provisional
Probab=99.42 E-value=4.2e-12 Score=100.29 Aligned_cols=112 Identities=22% Similarity=0.251 Sum_probs=82.8
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
.++.+|||+|||+|.++..++.. ..+++|+|+|+++++.+++++...+.. ...+.++++|+.+.. .
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~-------~~~~~~~~~d~~~~~------~ 87 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIR-------NNGVEVIRSDLFEPF------R 87 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCC-------CcceEEEeccccccc------c
Confidence 57789999999999998888766 568999999999999998887632211 112778888876532 3
Q ss_pred CCCeeEEEEccccccc-----------------CCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 163 DAPFDICSCQFAMHYS-----------------WSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~-----------------~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
+++||+|+++..+... .........+++++.++|+|||.+++..++
T Consensus 88 ~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 88 GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 4589999987543220 011334677899999999999999887664
No 100
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=3.4e-12 Score=100.16 Aligned_cols=110 Identities=22% Similarity=0.281 Sum_probs=88.7
Q ss_pred HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (262)
Q Consensus 73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 152 (262)
+..+++.+.+.++.+|||||||+|..+.-+++ -.++|+.+|..+...+.|++++..++.. ||.+.++|..
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~-l~~~V~siEr~~~L~~~A~~~L~~lg~~---------nV~v~~gDG~ 130 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLAR-LVGRVVSIERIEELAEQARRNLETLGYE---------NVTVRHGDGS 130 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHH-HhCeEEEEEEcHHHHHHHHHHHHHcCCC---------ceEEEECCcc
Confidence 55677777889999999999999988877755 3449999999999999999999865543 4999999986
Q ss_pred ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
.--- +..+||.|++..+...+ + +.+.+.|++||++++-+.
T Consensus 131 ~G~~-----~~aPyD~I~Vtaaa~~v--P--------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 131 KGWP-----EEAPYDRIIVTAAAPEV--P--------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred cCCC-----CCCCcCEEEEeeccCCC--C--------HHHHHhcccCCEEEEEEc
Confidence 5422 56899999999988755 1 346788999999998665
No 101
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.40 E-value=2.2e-12 Score=106.59 Aligned_cols=98 Identities=22% Similarity=0.285 Sum_probs=72.5
Q ss_pred ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
..++.+|||+|||+|.++..+++.+..+++|+|+|+.+++.|+++....+ ....+.+..
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~--------~~~~~~~~~------------- 175 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG--------VELNVYLPQ------------- 175 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC--------CCceEEEcc-------------
Confidence 35788999999999988877766555579999999999999999876311 111122111
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
.+.+||+|+++... .....++.++.++|+|||.++++..
T Consensus 176 ~~~~fD~Vvani~~-------~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 176 GDLKADVIVANILA-------NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred CCCCcCEEEEcCcH-------HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 12279999986533 3456789999999999999999854
No 102
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.40 E-value=2e-12 Score=103.26 Aligned_cols=111 Identities=22% Similarity=0.293 Sum_probs=82.3
Q ss_pred HHHHHHHHhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (262)
Q Consensus 73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d 150 (262)
...++..+...++.+|||||||+|..+..++. ...+.|+++|..+..++.|++++...+. .++.++++|
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~---------~nv~~~~gd 131 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI---------DNVEVVVGD 131 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT---------HSEEEEES-
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc---------CceeEEEcc
Confidence 45567777788999999999999988887765 3455799999999999999999885432 369999999
Q ss_pred ccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
...... +..+||.|++..+...+ -..+.+.|++||+|++-+.
T Consensus 132 g~~g~~-----~~apfD~I~v~~a~~~i----------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 132 GSEGWP-----EEAPFDRIIVTAAVPEI----------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGGTTG-----GG-SEEEEEESSBBSS------------HHHHHTEEEEEEEEEEES
T ss_pred hhhccc-----cCCCcCEEEEeeccchH----------HHHHHHhcCCCcEEEEEEc
Confidence 765322 45789999999888643 1347778999999998654
No 103
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.40 E-value=3.4e-12 Score=102.71 Aligned_cols=130 Identities=23% Similarity=0.281 Sum_probs=91.9
Q ss_pred chhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhcc-Cccc--cccccCCCC
Q 024797 66 LKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG-DADH--HQRRKKFSF 142 (262)
Q Consensus 66 ~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~--~~~~~~~~~ 142 (262)
....+..+...+..+...++.+||..|||.|..+..|+..+. .|+|+|+|+.+++.+.+.... .... .....-...
T Consensus 19 ~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~ 97 (218)
T PF05724_consen 19 QGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAG 97 (218)
T ss_dssp -TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTS
T ss_pred CCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCC
Confidence 344445566666665667778999999999999998887654 799999999999998543321 0000 000001134
Q ss_pred CeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEE
Q 024797 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202 (262)
Q Consensus 143 ~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~l 202 (262)
+|++.++|+.+++.. ..++||+|+=..+++-+ +++.+.+..+.+.++|+|||.+
T Consensus 98 ~i~~~~gDfF~l~~~----~~g~fD~iyDr~~l~Al--pp~~R~~Ya~~l~~ll~p~g~~ 151 (218)
T PF05724_consen 98 RITIYCGDFFELPPE----DVGKFDLIYDRTFLCAL--PPEMRERYAQQLASLLKPGGRG 151 (218)
T ss_dssp SEEEEES-TTTGGGS----CHHSEEEEEECSSTTTS---GGGHHHHHHHHHHCEEEEEEE
T ss_pred ceEEEEcccccCChh----hcCCceEEEEecccccC--CHHHHHHHHHHHHHHhCCCCcE
Confidence 689999999997642 23589999988888766 6778999999999999999994
No 104
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.40 E-value=6.1e-12 Score=88.60 Aligned_cols=103 Identities=26% Similarity=0.377 Sum_probs=82.3
Q ss_pred eEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCe
Q 024797 87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF 166 (262)
Q Consensus 87 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f 166 (262)
+|||+|||.|.++..++.....+++++|+++.++..+++.... ....++.+...|+.+... ...++|
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~----~~~~~~ 67 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA---------LLADNVEVLKGDAEELPP----EADESF 67 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc---------ccccceEEEEcChhhhcc----ccCCce
Confidence 5899999999998888765566899999999999999853321 123458888999877643 135789
Q ss_pred eEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 167 DICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 167 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
|+|++...++++ ......+++.+.+.|++||.+++.
T Consensus 68 d~i~~~~~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 68 DVIISDPPLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EEEEEccceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 999999998862 377899999999999999999875
No 105
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.39 E-value=8.8e-13 Score=104.33 Aligned_cols=114 Identities=14% Similarity=0.254 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC
Q 024797 70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (262)
Q Consensus 70 ~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~ 149 (262)
.+|+..+...- .....++|+|||+|. +...++....+|+|+|+|+.|++.|++..+.. -..........
T Consensus 21 tdw~~~ia~~~--~~h~~a~DvG~G~Gq-a~~~iae~~k~VIatD~s~~mL~~a~k~~~~~--------y~~t~~~ms~~ 89 (261)
T KOG3010|consen 21 TDWFKKIASRT--EGHRLAWDVGTGNGQ-AARGIAEHYKEVIATDVSEAMLKVAKKHPPVT--------YCHTPSTMSSD 89 (261)
T ss_pred HHHHHHHHhhC--CCcceEEEeccCCCc-chHHHHHhhhhheeecCCHHHHHHhhcCCCcc--------cccCCcccccc
Confidence 55666554322 122289999999994 44444555778999999999999998875520 00001111112
Q ss_pred cccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCc-EEEE
Q 024797 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGG-TFIG 204 (262)
Q Consensus 150 d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG-~li~ 204 (262)
++.. +...++++|+|++..++|++ +.+.+++.+.|+||+.| .+.+
T Consensus 90 ~~v~-----L~g~e~SVDlI~~Aqa~HWF-----dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 90 EMVD-----LLGGEESVDLITAAQAVHWF-----DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred cccc-----ccCCCcceeeehhhhhHHhh-----chHHHHHHHHHHcCCCCCEEEE
Confidence 2222 22247899999999999987 56889999999998876 5544
No 106
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.39 E-value=8.6e-12 Score=104.95 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=83.1
Q ss_pred CeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797 86 DVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (262)
Q Consensus 86 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (262)
.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|+++.... +...++.++++|+.+. + +..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~--------~~~~~v~~~~~d~~~~-~-----~~~ 181 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKN--------QLEHRVEFIQSNLFEP-L-----AGQ 181 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCcEEEEECchhcc-C-----cCC
Confidence 68999999999998888764 3458999999999999999987632 2233589999998652 2 344
Q ss_pred CeeEEEEcc-------------ccccc--------CCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797 165 PFDICSCQF-------------AMHYS--------WSTEARARRALANVSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 165 ~fD~V~~~~-------------~l~~~--------~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 209 (262)
+||+|+++- +..|- .+.......++..+.++|+|||.+++.+.+.
T Consensus 182 ~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 182 KIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 899999863 11111 0112357789999999999999999988754
No 107
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.39 E-value=8.5e-12 Score=103.12 Aligned_cols=111 Identities=21% Similarity=0.195 Sum_probs=82.6
Q ss_pred cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
..+.+|||+|||+|.++..++.. +...++|+|+++.+++.|+++....+. .++.++++|+.+. +
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---------~~~~~~~~d~~~~-~----- 150 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL---------DNVTFLQSDWFEP-L----- 150 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC---------CeEEEEECchhcc-C-----
Confidence 34568999999999999988764 345899999999999999998763221 2588999998662 3
Q ss_pred CCCCeeEEEEcccccc------cCC----------------CHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 162 DDAPFDICSCQFAMHY------SWS----------------TEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~------~~~----------------~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
+.++||+|+++..+.. +.. .......++.++.++|+|||.+++....
T Consensus 151 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~ 219 (251)
T TIGR03534 151 PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY 219 (251)
T ss_pred cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 4678999998653321 100 0122357889999999999999998753
No 108
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.38 E-value=2.8e-12 Score=107.25 Aligned_cols=111 Identities=23% Similarity=0.295 Sum_probs=80.4
Q ss_pred ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
..++.+|||+|||+|.+++..++.+.++|+|+|+++.+++.|+++.... +...++.+. ...+ .
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N--------~~~~~~~v~--~~~~--~----- 221 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELN--------GVEDRIEVS--LSED--L----- 221 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHT--------T-TTCEEES--CTSC--T-----
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHc--------CCCeeEEEE--Eecc--c-----
Confidence 4578899999999999988887778889999999999999999998732 333344332 1112 1
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe---CChHHHHHHH
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM---PDANVIIKKL 216 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~---~~~~~~~~~~ 216 (262)
..++||+|+++-.. +-...++..+.+.|+|||+++++- ...+.+...+
T Consensus 222 ~~~~~dlvvANI~~-------~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~ 272 (295)
T PF06325_consen 222 VEGKFDLVVANILA-------DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAY 272 (295)
T ss_dssp CCS-EEEEEEES-H-------HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred ccccCCEEEECCCH-------HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHH
Confidence 34899999987644 345778888999999999999874 2334555555
No 109
>PTZ00146 fibrillarin; Provisional
Probab=99.38 E-value=4.2e-12 Score=105.18 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=78.1
Q ss_pred HHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc-
Q 024797 79 QLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH- 155 (262)
Q Consensus 79 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~- 155 (262)
.+.+.++.+|||+|||+|.++..++.. ..+.|+++|+++.|++...+.... ..++.++.+|+....
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----------r~NI~~I~~Da~~p~~ 195 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----------RPNIVPIIEDARYPQK 195 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----------cCCCEEEECCccChhh
Confidence 445678899999999999999988763 356899999998766444443321 135888999986421
Q ss_pred cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
+. ...+.||+|++.... +.+...++.++.++|||||.|++.+
T Consensus 196 y~---~~~~~vDvV~~Dva~------pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 196 YR---MLVPMVDVIFADVAQ------PDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred hh---cccCCCCEEEEeCCC------cchHHHHHHHHHHhccCCCEEEEEE
Confidence 11 023579999988742 1345667778999999999999864
No 110
>PRK00811 spermidine synthase; Provisional
Probab=99.38 E-value=5.4e-12 Score=105.90 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=86.4
Q ss_pred ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
...+.+||++|||+|..+..+++. ...+|+++|+++.+++.|++.+...+... ....+++++.+|+..+-..
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~----~~d~rv~v~~~Da~~~l~~--- 146 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA----YDDPRVELVIGDGIKFVAE--- 146 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc----ccCCceEEEECchHHHHhh---
Confidence 346679999999999999988775 45689999999999999999875321100 0145689999998764321
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
..++||+|++...-.+.....-....+++.+.+.|+|||++++...+
T Consensus 147 -~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 147 -TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred -CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 35789999987644332111112367889999999999999986543
No 111
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.37 E-value=9.9e-12 Score=105.49 Aligned_cols=108 Identities=18% Similarity=0.215 Sum_probs=81.2
Q ss_pred HHHHHHhccCCCeEEEecCCCCcchHHHHhcC--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (262)
Q Consensus 75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 152 (262)
.++..+...++.+|||+|||+|.++..+++.. .+.|+++|+++++++.|++++...+ ..++.++++|+.
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g---------~~nV~~i~gD~~ 141 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG---------IENVIFVCGDGY 141 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---------CCcEEEEeCChh
Confidence 34444556678899999999999988887632 3479999999999999999876432 235889999976
Q ss_pred ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
.... ..++||+|++.....++ ...+.+.|+|||.+++..
T Consensus 142 ~~~~-----~~~~fD~Ii~~~g~~~i----------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 142 YGVP-----EFAPYDVIFVTVGVDEV----------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hccc-----ccCCccEEEECCchHHh----------HHHHHHhcCCCCEEEEEe
Confidence 6543 34679999988765432 234678999999998865
No 112
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.36 E-value=5.1e-12 Score=99.98 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=74.4
Q ss_pred ccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc-
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK- 158 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~- 158 (262)
..++.+|||+|||+|.++..+++. ..++++++|+|+.+ .. .++.++++|+.+.....
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~--------------~~i~~~~~d~~~~~~~~~ 89 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI--------------ENVDFIRGDFTDEEVLNK 89 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC--------------CCceEEEeeCCChhHHHH
Confidence 367889999999999988877653 34579999999854 11 13778888886643100
Q ss_pred c--cCCCCCeeEEEEccccc--------ccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797 159 V--LADDAPFDICSCQFAMH--------YSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 159 ~--~~~~~~fD~V~~~~~l~--------~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 209 (262)
. ..+.++||+|++..+.+ |. ...+....++..+.++|+|||.+++.....
T Consensus 90 l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 90 IRERVGDDKVDVVMSDAAPNISGYWDIDHL-RSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred HHHHhCCCCccEEEcCCCCCCCCCccccHH-HHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 0 01456899999865422 11 012335789999999999999999976543
No 113
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.7e-11 Score=98.35 Aligned_cols=119 Identities=20% Similarity=0.234 Sum_probs=98.3
Q ss_pred HHHHHhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797 76 VLVQLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (262)
Q Consensus 76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 153 (262)
++......++.+|||.|.|+|.++..++. .+.++|+.+|+-++.++.|++++.+. .+..++.+..+|+.+
T Consensus 86 I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~--------~l~d~v~~~~~Dv~~ 157 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--------GLGDRVTLKLGDVRE 157 (256)
T ss_pred HHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh--------ccccceEEEeccccc
Confidence 44455678999999999999999999985 46689999999999999999999854 334558889999987
Q ss_pred cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHh
Q 024797 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (262)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~ 217 (262)
... ...||+|++.. +++.+++..++++|+|||.+++.+|..+.+.+-+.
T Consensus 158 ~~~------~~~vDav~LDm---------p~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~ 206 (256)
T COG2519 158 GID------EEDVDAVFLDL---------PDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVE 206 (256)
T ss_pred ccc------ccccCEEEEcC---------CChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Confidence 764 34899998644 66789999999999999999999999877654433
No 114
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.35 E-value=1.1e-11 Score=110.12 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=86.1
Q ss_pred HhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (262)
Q Consensus 80 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (262)
+.+.++.+|||+|||+|..+..++.. ..+.|+++|+++.+++.+++++...+. .++.++++|+..++..
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~---------~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL---------KSIKILAADSRNLLEL 318 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---------CeEEEEeCChhhcccc
Confidence 34567899999999999999888763 346899999999999999998874332 2489999998776410
Q ss_pred cccCCCCCeeEEEEcc------cccccCC-----CHH-------HHHHHHHHHHhccCCCcEEEEEeC
Q 024797 158 KVLADDAPFDICSCQF------AMHYSWS-----TEA-------RARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 158 ~~~~~~~~fD~V~~~~------~l~~~~~-----~~~-------~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
.. ...++||.|++.. ++.+..+ +.. .+.+++.++.+.|||||.|+.++.
T Consensus 319 ~~-~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 319 KP-QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred cc-cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 00 0356899999743 3332210 111 257889999999999999987764
No 115
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.35 E-value=2e-11 Score=105.85 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=82.7
Q ss_pred cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
.++.+|||+|||+|.++..++.. +..+++|+|+|+.|++.|+++.... ..++.++++|+.+....
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~----------g~rV~fi~gDl~e~~l~---- 315 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL----------GARVEFAHGSWFDTDMP---- 315 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----------CCcEEEEEcchhccccc----
Confidence 35569999999999998888753 4568999999999999999987632 23689999998654321
Q ss_pred CCCCeeEEEEcccccc-----c----------------CCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 162 DDAPFDICSCQFAMHY-----S----------------WSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~-----~----------------~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
..++||+|+++-...- . -+..+..+.++..+.+.|+|||.+++.+..
T Consensus 316 ~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~ 383 (423)
T PRK14966 316 SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF 383 (423)
T ss_pred cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 2457999999753210 0 011223567888889999999999987754
No 116
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.34 E-value=3e-11 Score=101.28 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=83.7
Q ss_pred hccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797 81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (262)
...++.+|||+|||+|..+..++.. +...++|+|+|+.+++.|+++... ....++.++++|+... .
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~---------~~~~~i~~~~~d~~~~-~--- 171 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH---------GLGARVEFLQGDWFEP-L--- 171 (275)
T ss_pred cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh---------CCCCcEEEEEccccCc-C---
Confidence 3456789999999999998888764 356899999999999999998651 1234689999998542 1
Q ss_pred cCCCCCeeEEEEcccccc------c----------------CCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 160 LADDAPFDICSCQFAMHY------S----------------WSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~------~----------------~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
+.++||+|+++....- + ....+....++.++.++|+|||.+++.+..
T Consensus 172 --~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~ 240 (275)
T PRK09328 172 --PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY 240 (275)
T ss_pred --CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 3478999998642210 0 011244578899999999999999998743
No 117
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.34 E-value=1.2e-11 Score=96.21 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=80.9
Q ss_pred HHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (262)
Q Consensus 75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (262)
.++..+...++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++.. ..+++++++|+.++
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~-----------~~~v~ii~~D~~~~ 71 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA-----------ADNLTVIHGDALKF 71 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc-----------CCCEEEEECchhcC
Confidence 3445555567789999999999999998876 56899999999999999988752 23689999999888
Q ss_pred ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
+. ++..||.|+++..++ . ..+....++... .+.++|.+++...
T Consensus 72 ~~-----~~~~~d~vi~n~Py~-~--~~~~i~~~l~~~--~~~~~~~l~~q~e 114 (169)
T smart00650 72 DL-----PKLQPYKVVGNLPYN-I--STPILFKLLEEP--PAFRDAVLMVQKE 114 (169)
T ss_pred Cc-----cccCCCEEEECCCcc-c--HHHHHHHHHhcC--CCcceEEEEEEHH
Confidence 75 455799999876554 2 233334443321 2457888887543
No 118
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.34 E-value=1.8e-11 Score=108.45 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=86.2
Q ss_pred HhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (262)
Q Consensus 80 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (262)
+.+.++.+|||+|||+|..+..++.. ..+.|+++|+|+.+++.+++++...+. .++.+.++|+..++..
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---------~~v~~~~~Da~~l~~~ 303 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---------SSIEIKIADAERLTEY 303 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---------CeEEEEECchhhhhhh
Confidence 34568889999999999998888763 356899999999999999999874332 2488999998776410
Q ss_pred cccCCCCCeeEEEEcccc---cccCC--------CH-------HHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 158 KVLADDAPFDICSCQFAM---HYSWS--------TE-------ARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l---~~~~~--------~~-------~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
..++||.|++.... ..+-. +. ..+.+++.++.+.|+|||.++.++..
T Consensus 304 ----~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 304 ----VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred ----hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 35689999975322 11100 11 23577899999999999999988764
No 119
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.33 E-value=2.1e-11 Score=108.84 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=84.1
Q ss_pred hccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797 81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (262)
...++.+|||+|||+|..+..++.. ..+.|+++|+|+.+++.+++++...+. .+++++++|+..+.
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---------~~v~~~~~Da~~~~--- 314 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---------TIIETIEGDARSFS--- 314 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---------CeEEEEeCcccccc---
Confidence 4457889999999999988777652 345899999999999999999874332 24899999987764
Q ss_pred ccCCCCCeeEEEEcc------ccccc-----CCCHH-------HHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 159 VLADDAPFDICSCQF------AMHYS-----WSTEA-------RARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~------~l~~~-----~~~~~-------~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
++++||+|++.. .+... ..+.+ .+..++.++.++|+|||++++++..
T Consensus 315 ---~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 315 ---PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred ---cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 356899999642 11100 00222 3457899999999999999998854
No 120
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.33 E-value=3e-11 Score=107.26 Aligned_cols=115 Identities=24% Similarity=0.289 Sum_probs=84.1
Q ss_pred HhccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797 80 LYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (262)
Q Consensus 80 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (262)
+.+.++.+|||+|||+|..+..++... .+.|+++|+++.+++.+++++... +.++.++++|+...+..
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~----------g~~~~~~~~D~~~~~~~- 308 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL----------GLKATVIVGDARDPAQW- 308 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc----------CCCeEEEEcCcccchhh-
Confidence 345688999999999999998887643 358999999999999999988732 22467899998765310
Q ss_pred ccCCCCCeeEEEEccccc------cc-----CCCH-------HHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 159 VLADDAPFDICSCQFAMH------YS-----WSTE-------ARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~------~~-----~~~~-------~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
.+.++||.|++..... +- .... ..+.+++..+.++|+|||.+++++.
T Consensus 309 --~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 309 --WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred --cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 1356899999644211 00 0112 2245789999999999999998774
No 121
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.32 E-value=2.4e-11 Score=96.29 Aligned_cols=123 Identities=18% Similarity=0.259 Sum_probs=86.0
Q ss_pred ccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
......+||||||.|.++..++. .+...++|+|++...+..+.+++...+ ..|+.++++|+..+- ...
T Consensus 15 ~~~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~---------l~Nv~~~~~da~~~l-~~~- 83 (195)
T PF02390_consen 15 GNDNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG---------LKNVRFLRGDARELL-RRL- 83 (195)
T ss_dssp TSCCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT---------TSSEEEEES-CTTHH-HHH-
T ss_pred CCCCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc---------ccceEEEEccHHHHH-hhc-
Confidence 34455899999999999999987 456679999999999999988887433 456999999987732 111
Q ss_pred CCCCCeeEEEEcccccccCCC----HHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHH
Q 024797 161 ADDAPFDICSCQFAMHYSWST----EARARRALANVSALLRPGGTFIGTMPDANVIIKK 215 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~----~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~ 215 (262)
.+++++|.|++++.--|.... .--...++..++++|+|||.+.+.+.+.++....
T Consensus 84 ~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~ 142 (195)
T PF02390_consen 84 FPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWM 142 (195)
T ss_dssp STTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHH
T ss_pred ccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHH
Confidence 257899999987733221000 0012678999999999999999999887665433
No 122
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.32 E-value=1.2e-11 Score=102.98 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=84.7
Q ss_pred HhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (262)
Q Consensus 80 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (262)
+.+.++.+|||+|||+|..+..++.. ..+.|+++|+++.+++.+++++...+. .++.+++.|+..++.
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~---------~~v~~~~~D~~~~~~- 136 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV---------LNVAVTNFDGRVFGA- 136 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---------CcEEEecCCHHHhhh-
Confidence 34568899999999999999887663 345899999999999999999874322 348899999876543
Q ss_pred cccCCCCCeeEEEEccc------ccccC-----CCH-------HHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 158 KVLADDAPFDICSCQFA------MHYSW-----STE-------ARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 158 ~~~~~~~~fD~V~~~~~------l~~~~-----~~~-------~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
..+.||.|++... +.+-. -+. ..+..+|..+.+.|+|||+|+.++..
T Consensus 137 ----~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 137 ----AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred ----hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3456999997531 11100 011 13466999999999999999888653
No 123
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=4.2e-11 Score=98.86 Aligned_cols=138 Identities=20% Similarity=0.268 Sum_probs=98.6
Q ss_pred cHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCcc
Q 024797 54 TLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDAD 132 (262)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~ 132 (262)
..........|+...+..=-+.++..+....+.+|||+|||.|-++..+++. +..+++.+|+|..+++.|++++...+
T Consensus 128 ~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~- 206 (300)
T COG2813 128 ELTFKTLPGVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG- 206 (300)
T ss_pred ceEEEeCCCCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC-
Confidence 3334445556666666555566666666666779999999999999998874 56689999999999999999987422
Q ss_pred ccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCC-HHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 133 HHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST-EARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 133 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~-~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
..+..+...|..+-- .++||+|+|+--+|--... ..-..+++....+.|++||.|.+...
T Consensus 207 --------~~~~~v~~s~~~~~v-------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 207 --------VENTEVWASNLYEPV-------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred --------CCccEEEEecccccc-------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 222355666655432 3499999999877632111 11235899999999999999987754
No 124
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.32 E-value=9.3e-12 Score=100.61 Aligned_cols=116 Identities=19% Similarity=0.214 Sum_probs=88.7
Q ss_pred cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
....+|||+|||+|..++.+++. ...+++|||+.+++.+.|++... .+.+..+++++++|+.++....
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~--------ln~l~~ri~v~~~Di~~~~~~~--- 111 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVA--------LNPLEERIQVIEADIKEFLKAL--- 111 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHH--------hCcchhceeEehhhHHHhhhcc---
Confidence 34779999999999999888765 44689999999999999999887 3456788999999998765321
Q ss_pred CCCCeeEEEEccccccc----C----------CCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797 162 DDAPFDICSCQFAMHYS----W----------STEARARRALANVSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~----~----------~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 209 (262)
...+||+|+|+--..-. . ...-+.+.+++.+.+.||+||.+.+..+-.
T Consensus 112 ~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e 173 (248)
T COG4123 112 VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE 173 (248)
T ss_pred cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH
Confidence 23579999997532111 0 011235788999999999999998876543
No 125
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.31 E-value=7e-12 Score=96.48 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=67.2
Q ss_pred EEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHH
Q 024797 111 VGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA 190 (262)
Q Consensus 111 ~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~ 190 (262)
+|+|+|++|++.|+++..... .....+++++++|+.++++ ++++||+|++.++++++ .++..+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~------~~~~~~i~~~~~d~~~lp~-----~~~~fD~v~~~~~l~~~----~d~~~~l~ 65 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKA------RSCYKCIEWIEGDAIDLPF-----DDCEFDAVTMGYGLRNV----VDRLRAMK 65 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccc------ccCCCceEEEEechhhCCC-----CCCCeeEEEecchhhcC----CCHHHHHH
Confidence 489999999999987654110 1112368999999999887 67899999999999987 67889999
Q ss_pred HHHhccCCCcEEEEEeC
Q 024797 191 NVSALLRPGGTFIGTMP 207 (262)
Q Consensus 191 ~~~~~L~~gG~li~~~~ 207 (262)
+++++|||||.+++...
T Consensus 66 ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 66 EMYRVLKPGSRVSILDF 82 (160)
T ss_pred HHHHHcCcCeEEEEEEC
Confidence 99999999999987643
No 126
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.28 E-value=3.2e-11 Score=105.43 Aligned_cols=116 Identities=15% Similarity=0.137 Sum_probs=82.6
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCC-CCeEEEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~ 161 (262)
.++.+|||+|||+|.++...+..+..+|+++|+|+.+++.|++++... ++. .+++++++|+.+... ....
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~N--------gl~~~~v~~i~~D~~~~l~-~~~~ 289 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELN--------KLDLSKAEFVRDDVFKLLR-TYRD 289 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCCcEEEEEccHHHHHH-HHHh
Confidence 367899999999999888766555668999999999999999988732 222 368999999876521 1100
Q ss_pred CCCCeeEEEEccccccc-----CCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 162 DDAPFDICSCQFAMHYS-----WSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~-----~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
..++||+|+++--..-- .........++..+.++|+|||.++.+..
T Consensus 290 ~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred cCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 24589999987532100 00112455667788999999999987654
No 127
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.28 E-value=2.4e-11 Score=96.00 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=73.3
Q ss_pred CCCeEEEecCCCCcchHHH----Hh---cCC---CeEEEEeCChhHHHHHHHHhc-cCccc---------cc-cc-----
Q 024797 84 RGDVVLDLACGKGGDLIKW----DK---AKI---GYYVGIDIAEGSIEDCRTRYN-GDADH---------HQ-RR----- 137 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l----~~---~~~---~~v~gvD~s~~~~~~a~~~~~-~~~~~---------~~-~~----- 137 (262)
+..+|+-+||++|.-.-.+ .. ... -+++|+|+|+.+++.|++..- ..... .. ..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4569999999999843322 12 112 269999999999999987531 11110 00 00
Q ss_pred ---cCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 138 ---KKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 138 ---~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
..+..+|.|.+.|+.+.+. +.+.||+|+|.+++.|+ +.+.+.++++.+++.|+|||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~-----~~~~fD~I~CRNVlIYF--~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDP-----PFGRFDLIFCRNVLIYF--DPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-----------EEEEEE-SSGGGS---HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCc-----ccCCccEEEecCEEEEe--CHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 1122468999999887222 46899999999999999 8889999999999999999999985
No 128
>PHA03411 putative methyltransferase; Provisional
Probab=99.27 E-value=4.2e-11 Score=98.24 Aligned_cols=104 Identities=17% Similarity=0.123 Sum_probs=78.7
Q ss_pred cCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
....+|||+|||+|.++..++... ..+++|+|+++.|++.++++.. ++.++++|+.++..
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~--------------~v~~v~~D~~e~~~----- 123 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP--------------EAEWITSDVFEFES----- 123 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc--------------CCEEEECchhhhcc-----
Confidence 345799999999998888776542 4589999999999999988643 37899999987642
Q ss_pred CCCCeeEEEEcccccccCCC-HHH---------------HHHHHHHHHhccCCCcEEEEEe
Q 024797 162 DDAPFDICSCQFAMHYSWST-EAR---------------ARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~-~~~---------------~~~~l~~~~~~L~~gG~li~~~ 206 (262)
..+||+|+++..+.+.... ..+ ...++.....+|+|+|.+++..
T Consensus 124 -~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 124 -NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred -cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 4689999998877764111 011 2456777889999999876654
No 129
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.27 E-value=6.1e-11 Score=96.79 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=82.3
Q ss_pred cCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
.++.+|||+|||+|..+..++.. ..++++++|+++++++.|++++... ++..+++++.+|+.+.- ..+.
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~--------gl~~~i~~~~gda~~~L-~~l~ 137 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA--------GVDHKINFIQSDALSAL-DQLL 137 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCcEEEEEccHHHHH-HHHH
Confidence 46789999999999877776653 4568999999999999999998743 33456999999986641 1110
Q ss_pred --CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 161 --ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 161 --~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
.+.++||+|++... .+....++..+.+.|+|||.+++..
T Consensus 138 ~~~~~~~fD~VfiDa~-------k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 138 NNDPKPEFDFAFVDAD-------KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred hCCCCCCCCEEEECCC-------HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 02468999987652 2455678899999999999998753
No 130
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.26 E-value=4.9e-11 Score=111.80 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=86.3
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCC-CCeEEEeCcccccccccccCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~ 162 (262)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++... +.. .+++++++|+.+.... .
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~n--------g~~~~~v~~i~~D~~~~l~~----~ 605 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALN--------GLSGRQHRLIQADCLAWLKE----A 605 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--------CCCccceEEEEccHHHHHHH----c
Confidence 57899999999999999988776667999999999999999998732 222 4689999998764210 1
Q ss_pred CCCeeEEEEccccc-------ccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 163 DAPFDICSCQFAMH-------YSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 163 ~~~fD~V~~~~~l~-------~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
.++||+|+++--.. ..+....+...++..+.++|+|||.+++++..
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 46899999864210 11123456778899999999999999887643
No 131
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.25 E-value=1e-10 Score=105.55 Aligned_cols=110 Identities=17% Similarity=0.148 Sum_probs=81.2
Q ss_pred CCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
+.+|||+|||+|.++..++.. +..+++++|+|+.+++.|+++.... +...++.++++|+.+. . +.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~--------~l~~~v~~~~~D~~~~-~-----~~ 204 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY--------EVTDRIQIIHSNWFEN-I-----EK 204 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc--------CCccceeeeecchhhh-C-----cC
Confidence 468999999999998887754 4568999999999999999987632 2234688999997542 2 34
Q ss_pred CCeeEEEEccccc--------------cc--------CCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 164 APFDICSCQFAMH--------------YS--------WSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 164 ~~fD~V~~~~~l~--------------~~--------~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
++||+|+++-... |- -+..+....++..+.++|+|||.+++.+..
T Consensus 205 ~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~ 271 (506)
T PRK01544 205 QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF 271 (506)
T ss_pred CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC
Confidence 6899999864211 10 001234567888999999999999988753
No 132
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.25 E-value=1.8e-10 Score=94.98 Aligned_cols=109 Identities=21% Similarity=0.213 Sum_probs=78.2
Q ss_pred CCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
+.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|++++... .++++++|+.+... .. ..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~------------~~~~~~~D~~~~l~-~~--~~ 151 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA------------GGTVHEGDLYDALP-TA--LR 151 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------------CCEEEEeechhhcc-hh--cC
Confidence 458999999999999888754 3447999999999999999987621 14688888765321 00 13
Q ss_pred CCeeEEEEccccc------ccC----------------CCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 164 APFDICSCQFAMH------YSW----------------STEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 164 ~~fD~V~~~~~l~------~~~----------------~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
++||+|+++--.. .+. +..+....++..+.++|+|||.+++.+..
T Consensus 152 ~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 152 GRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred CCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 5799999875321 110 01123467888899999999999988754
No 133
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.24 E-value=9.3e-11 Score=104.12 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=83.6
Q ss_pred HHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797 79 QLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (262)
Q Consensus 79 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (262)
.+.+.++.+|||+|||+|..+..+++. +.++++++|+++++++.+++++...+. ...+.+..+|....+..
T Consensus 233 ~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~--------~~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 233 WLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL--------TIKAETKDGDGRGPSQW 304 (426)
T ss_pred HhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC--------CeEEEEecccccccccc
Confidence 345668899999999999999888763 356899999999999999998874321 22244466676543210
Q ss_pred cccCCCCCeeEEEEcc------cccccCC-----CH-------HHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 158 KVLADDAPFDICSCQF------AMHYSWS-----TE-------ARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 158 ~~~~~~~~fD~V~~~~------~l~~~~~-----~~-------~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
.+.++||.|++.. ++.+..+ ++ ..+..+|.++.++|||||.++.++..
T Consensus 305 ---~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 305 ---AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred ---ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 1356899999642 3332210 11 12578999999999999999988753
No 134
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=1.2e-10 Score=104.12 Aligned_cols=115 Identities=21% Similarity=0.197 Sum_probs=83.9
Q ss_pred HhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (262)
Q Consensus 80 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (262)
+...++.+|||+|||+|..+..++.. +.+.++++|+++.+++.+++++...+. .++.++++|+..+...
T Consensus 246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---------~~v~~~~~D~~~~~~~ 316 (444)
T PRK14902 246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---------TNIETKALDARKVHEK 316 (444)
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---------CeEEEEeCCcccccch
Confidence 34467889999999999999888763 456899999999999999998874322 2389999998775310
Q ss_pred cccCCCCCeeEEEEcccc------ccc-----CCCHH-------HHHHHHHHHHhccCCCcEEEEEeC
Q 024797 158 KVLADDAPFDICSCQFAM------HYS-----WSTEA-------RARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l------~~~-----~~~~~-------~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
-.+.||+|++.... .+. ..+.. .+..++..+.++|+|||.++.++.
T Consensus 317 ----~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 317 ----FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred ----hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 12689999986421 110 00111 235689999999999999997664
No 135
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.24 E-value=1.1e-10 Score=95.18 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=91.7
Q ss_pred HHHHHHhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (262)
Q Consensus 75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 152 (262)
.++..+.+.||.+|||.|.|+|.++..+++ .+.++|+.+|+.++.++.|++++... ++..++.+.+.|+.
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~--------gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH--------GLDDNVTVHHRDVC 102 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT--------TCCTTEEEEES-GG
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc--------CCCCCceeEeccee
Confidence 355566778999999999999999999986 47789999999999999999998853 44567999999986
Q ss_pred ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChHHHHHHH
Q 024797 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL-RPGGTFIGTMPDANVIIKKL 216 (262)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L-~~gG~li~~~~~~~~~~~~~ 216 (262)
..-+... .+..+|.|++.. +++..++..+.++| ++||++++-.|..+...+-+
T Consensus 103 ~~g~~~~--~~~~~DavfLDl---------p~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~ 156 (247)
T PF08704_consen 103 EEGFDEE--LESDFDAVFLDL---------PDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTV 156 (247)
T ss_dssp CG--STT---TTSEEEEEEES---------SSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHH
T ss_pred ccccccc--ccCcccEEEEeC---------CCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHH
Confidence 5333100 146899998755 44566889999999 89999999999988664443
No 136
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.22 E-value=3.5e-10 Score=94.45 Aligned_cols=115 Identities=19% Similarity=0.165 Sum_probs=82.6
Q ss_pred cCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
..+.+||++|||+|..+..+++.. ..+++++|+++++++.+++.+...+. .-...+++++.+|+...-..
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~-----~~~~~~v~i~~~D~~~~l~~---- 141 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG-----SYDDPRVDLQIDDGFKFLAD---- 141 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc-----cccCCceEEEECchHHHHHh----
Confidence 445699999999999888877654 56799999999999999997753210 00124578888887653211
Q ss_pred CCCCeeEEEEcccccccCCCHHH--HHHHHHHHHhccCCCcEEEEEeCC
Q 024797 162 DDAPFDICSCQFAMHYSWSTEAR--ARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~--~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
..++||+|++....... .... ...+++.+.+.|+|||.+++...+
T Consensus 142 ~~~~yDvIi~D~~~~~~--~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 142 TENTFDVIIVDSTDPVG--PAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred CCCCccEEEEeCCCCCC--cccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 25789999987653221 1112 467889999999999999987554
No 137
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.21 E-value=1.5e-10 Score=103.32 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=85.7
Q ss_pred HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (262)
Q Consensus 72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 151 (262)
++..++..+...++.+|||+|||+|.++..+++.. ..|+|+|+|+.|++.|++++...+ ..+++++++|+
T Consensus 285 l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~---------~~~v~~~~~d~ 354 (443)
T PRK13168 285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNG---------LDNVTFYHANL 354 (443)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcC---------CCceEEEEeCh
Confidence 34444444445677899999999999998887654 589999999999999999876322 23589999998
Q ss_pred cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHh
Q 024797 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (262)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~ 217 (262)
.+... .....+++||+|+++-.-.- ....+..+.+ ++|++.+++++ |+..+.+.+.
T Consensus 355 ~~~l~-~~~~~~~~fD~Vi~dPPr~g-------~~~~~~~l~~-~~~~~ivyvSC-np~tlaRDl~ 410 (443)
T PRK13168 355 EEDFT-DQPWALGGFDKVLLDPPRAG-------AAEVMQALAK-LGPKRIVYVSC-NPATLARDAG 410 (443)
T ss_pred HHhhh-hhhhhcCCCCEEEECcCCcC-------hHHHHHHHHh-cCCCeEEEEEe-ChHHhhccHH
Confidence 65321 00013467999998654321 2344555555 68899888886 5555544443
No 138
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.20 E-value=5.8e-10 Score=89.98 Aligned_cols=130 Identities=15% Similarity=0.109 Sum_probs=90.2
Q ss_pred HHHHHHHHHH---HhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeE
Q 024797 70 NNWIKSVLVQ---LYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR 145 (262)
Q Consensus 70 ~~~~~~~l~~---~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~ 145 (262)
.+|+..++.. .....+..|||+|||+|..+..++.. +...++++|.|+.++..|.+++..+ .+...+.
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~--------~l~g~i~ 202 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRL--------KLSGRIE 202 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHH--------hhcCceE
Confidence 3455555443 33446678999999999999988763 5668999999999999999988743 3344566
Q ss_pred EEeCcccccccccccCCCCCeeEEEEccccc----------------------ccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797 146 LICGDCYEVHLDKVLADDAPFDICSCQFAMH----------------------YSWSTEARARRALANVSALLRPGGTFI 203 (262)
Q Consensus 146 ~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~----------------------~~~~~~~~~~~~l~~~~~~L~~gG~li 203 (262)
++..+++.-.........++.|+++++--.. --.+..+....++.-+.|+|+|||.+.
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 6655554332222212568999999874211 001233456778888999999999999
Q ss_pred EEeC
Q 024797 204 GTMP 207 (262)
Q Consensus 204 ~~~~ 207 (262)
+.+.
T Consensus 283 le~~ 286 (328)
T KOG2904|consen 283 LELV 286 (328)
T ss_pred EEec
Confidence 9875
No 139
>PRK01581 speE spermidine synthase; Validated
Probab=99.19 E-value=1.9e-10 Score=97.96 Aligned_cols=120 Identities=16% Similarity=0.114 Sum_probs=83.0
Q ss_pred ccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHH--hccCccccccccCCCCCeEEEeCccccccccc
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTR--YNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (262)
...+.+||++|||.|..+..+++.. ..++++||+++++++.|++. +.+.+. ..-...+++++.+|+..+-..
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~----~~~~DpRV~vvi~Da~~fL~~- 222 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNK----SAFFDNRVNVHVCDAKEFLSS- 222 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcc----ccCCCCceEEEECcHHHHHHh-
Confidence 3456799999999998888887753 56899999999999999962 111000 001145799999998874321
Q ss_pred ccCCCCCeeEEEEccccccc-CCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797 159 VLADDAPFDICSCQFAMHYS-WSTEARARRALANVSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~-~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 209 (262)
..++||+|++...-... ....-.-..+++.+++.|+|||++++...++
T Consensus 223 ---~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp 271 (374)
T PRK01581 223 ---PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP 271 (374)
T ss_pred ---cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence 35689999988521100 0011223678999999999999998875444
No 140
>PLN02366 spermidine synthase
Probab=99.19 E-value=3e-10 Score=96.01 Aligned_cols=117 Identities=19% Similarity=0.142 Sum_probs=84.5
Q ss_pred ccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
...+.+||+||||.|..+..+++.+ ..+++.+|+++.+++.|++.+...+. ..-..+++++.+|+...-..
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~-----~~~dpRv~vi~~Da~~~l~~--- 160 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV-----GFDDPRVNLHIGDGVEFLKN--- 160 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc-----ccCCCceEEEEChHHHHHhh---
Confidence 3567899999999999998888764 46799999999999999998763211 01145799999998654210
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
.+.++||+|++...-.+.....-.-..+++.+++.|+|||.++.-.
T Consensus 161 ~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 161 APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred ccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 0256899999876443321111124678999999999999998743
No 141
>PHA03412 putative methyltransferase; Provisional
Probab=99.18 E-value=1.6e-10 Score=92.73 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=73.1
Q ss_pred CCCeEEEecCCCCcchHHHHhc----CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797 84 RGDVVLDLACGKGGDLIKWDKA----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (262)
.+.+|||+|||+|.++..+++. ....++++|+++.+++.|+++.. ++.++++|+...+.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--------------~~~~~~~D~~~~~~--- 111 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--------------EATWINADALTTEF--- 111 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--------------CCEEEEcchhcccc---
Confidence 4679999999999998877653 24479999999999999998754 37889999876543
Q ss_pred cCCCCCeeEEEEccccccc--------CCCHHHHHHHHHHHHhccCCCcE
Q 024797 160 LADDAPFDICSCQFAMHYS--------WSTEARARRALANVSALLRPGGT 201 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~--------~~~~~~~~~~l~~~~~~L~~gG~ 201 (262)
+++||+|+++--+.-. .........++..+.+++++|+.
T Consensus 112 ---~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 112 ---DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ---cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 4689999998643311 01223356688888887777775
No 142
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.17 E-value=6e-10 Score=88.42 Aligned_cols=108 Identities=7% Similarity=-0.023 Sum_probs=78.5
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
.++.+|||+|||+|.++..++.....+|+++|+++.+++.+++++...+ ..++.++++|+.+.... .
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~---------~~~v~~~~~D~~~~l~~----~ 118 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLK---------AGNARVVNTNALSFLAQ----P 118 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhC---------CCcEEEEEchHHHHHhh----c
Confidence 3577999999999999986555556689999999999999999876322 12589999998653210 2
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHh--ccCCCcEEEEEeCC
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMPD 208 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~--~L~~gG~li~~~~~ 208 (262)
..+||+|+++--+.. .....++..+.. +|.|+|.++++.+.
T Consensus 119 ~~~fDlV~~DPPy~~-----g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 119 GTPHNVVFVDPPFRK-----GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCCceEEEECCCCCC-----ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 356999998876431 123445555544 48999999998764
No 143
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.4e-09 Score=90.96 Aligned_cols=105 Identities=21% Similarity=0.286 Sum_probs=78.7
Q ss_pred eEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCC
Q 024797 87 VVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165 (262)
Q Consensus 87 ~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 165 (262)
+|||+|||+|..+..++... ...|+|+|+|+.+++.|++++...+ + .++.++++|+..-- .++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~--------l-~~~~~~~~dlf~~~-------~~~ 176 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNG--------L-VRVLVVQSDLFEPL-------RGK 176 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcC--------C-ccEEEEeeeccccc-------CCc
Confidence 79999999999999887643 3489999999999999999987432 2 34666677765532 358
Q ss_pred eeEEEEccccc-----cc----------------CCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 166 FDICSCQFAMH-----YS----------------WSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 166 fD~V~~~~~l~-----~~----------------~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
||+|+++--.. +. .+..+....++.++.+.|+|||.+++...
T Consensus 177 fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 177 FDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred eeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 99999874110 00 01234568889999999999999999876
No 144
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.16 E-value=3.7e-10 Score=92.87 Aligned_cols=98 Identities=20% Similarity=0.232 Sum_probs=79.6
Q ss_pred cCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
.+..+|||||+|.|.++..+++ .+.-+++.+|+ +.+++.+++ . .+++++.+|+. -++
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-~--------------~rv~~~~gd~f-~~~----- 156 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-A--------------DRVEFVPGDFF-DPL----- 156 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-T--------------TTEEEEES-TT-TCC-----
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-c--------------cccccccccHH-hhh-----
Confidence 4556899999999999999887 45668999998 778888887 2 25999999998 444
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCC--cEEEEEe
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG--GTFIGTM 206 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~g--G~li~~~ 206 (262)
|. +|++++..++|++ +.++...+|+++++.|+|| |+|+|..
T Consensus 157 P~--~D~~~l~~vLh~~--~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 157 PV--ADVYLLRHVLHDW--SDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp SS--ESEEEEESSGGGS---HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred cc--ccceeeehhhhhc--chHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 33 9999999999998 8899999999999999999 9988753
No 145
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.16 E-value=2.1e-10 Score=90.86 Aligned_cols=121 Identities=21% Similarity=0.273 Sum_probs=77.7
Q ss_pred CCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCcccccccc------------------------
Q 024797 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK------------------------ 138 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~------------------------ 138 (262)
.+..+|||||..|.++..+++. +...++|+||++..+..|++.+...........
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 5678999999999999999874 555699999999999999998753211100000
Q ss_pred --CCCCCeEEEeCccccccccc-ccCCCCCeeEEEEcccccccC--CCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 139 --KFSFPARLICGDCYEVHLDK-VLADDAPFDICSCQFAMHYSW--STEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 139 --~~~~~v~~~~~d~~~~~~~~-~~~~~~~fD~V~~~~~l~~~~--~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
..+.++.|...+..- .-.+ +......||+|+|..+-.++. -..+-...+++++.+.|.|||+||+.
T Consensus 138 t~~~p~n~~f~~~n~vl-e~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVL-ESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEE-ecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 111111111111000 0000 001357899999987543331 23456899999999999999999986
No 146
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.16 E-value=1.9e-10 Score=96.31 Aligned_cols=117 Identities=17% Similarity=0.186 Sum_probs=88.2
Q ss_pred HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (262)
Q Consensus 72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 151 (262)
+...++..-+.-.+.+|||+|||+|.++.+.++++..+|+++|.|. +++.|.+.... +++...++++++.+
T Consensus 48 Yr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~--------N~~~~ii~vi~gkv 118 (346)
T KOG1499|consen 48 YRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKD--------NGLEDVITVIKGKV 118 (346)
T ss_pred HHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHh--------cCccceEEEeecce
Confidence 3344444444568899999999999999999888888999999987 55888887763 34455689999999
Q ss_pred cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (262)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li 203 (262)
.++.+ |.+++|+|++-+.=..++ -..-+..++-.--++|+|||.++
T Consensus 119 Edi~L-----P~eKVDiIvSEWMGy~Ll-~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 119 EDIEL-----PVEKVDIIVSEWMGYFLL-YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EEEec-----CccceeEEeehhhhHHHH-HhhhhhhhhhhhhhccCCCceEc
Confidence 98876 578999999865322211 12235667777889999999976
No 147
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.16 E-value=4.3e-10 Score=93.81 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=83.7
Q ss_pred CCeEEEecCCCCcchHHH----Hhc-----CCCeEEEEeCChhHHHHHHHHhcc-C---ccc------ccc---------
Q 024797 85 GDVVLDLACGKGGDLIKW----DKA-----KIGYYVGIDIAEGSIEDCRTRYNG-D---ADH------HQR--------- 136 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l----~~~-----~~~~v~gvD~s~~~~~~a~~~~~~-~---~~~------~~~--------- 136 (262)
.-+|+..||++|.-.-.+ ... ..-+|+|+|+|+.+++.|++..-. . +.. .+.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 469999999999843222 121 123699999999999999876311 0 000 000
Q ss_pred ---ccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 137 ---RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 137 ---~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
...+...|.|.+.|+.+.++. +.+.||+|+|.+++.|+ +.+...+++..+++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~----~~~~fD~I~cRNvliyF--~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWA----VPGPFDAIFCRNVMIYF--DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCc----cCCCcceeeHhhHHhcC--CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 012335688999998764431 35789999999999999 88899999999999999999988753
No 148
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=3.1e-10 Score=87.07 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=63.3
Q ss_pred ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
.-.+.+|+|+|||||.++...+..+..+|+|+|+++++++.++++..+ +..++.|+++|+.++.
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~----------l~g~v~f~~~dv~~~~------ 106 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE----------LLGDVEFVVADVSDFR------ 106 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh----------hCCceEEEEcchhhcC------
Confidence 346778999999999999887777777999999999999999999873 3556999999998864
Q ss_pred CCCCeeEEEEccc
Q 024797 162 DDAPFDICSCQFA 174 (262)
Q Consensus 162 ~~~~fD~V~~~~~ 174 (262)
+.+|.|+++--
T Consensus 107 --~~~dtvimNPP 117 (198)
T COG2263 107 --GKFDTVIMNPP 117 (198)
T ss_pred --CccceEEECCC
Confidence 67888888753
No 149
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.14 E-value=6.3e-10 Score=89.71 Aligned_cols=118 Identities=21% Similarity=0.285 Sum_probs=90.1
Q ss_pred CeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797 86 DVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (262)
Q Consensus 86 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (262)
..+||||||.|.++..+|+. +...++|||+....+..|.+++.+.++. |+.+++.|+..+-. .+.+++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~---------Nlri~~~DA~~~l~--~~~~~~ 118 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK---------NLRLLCGDAVEVLD--YLIPDG 118 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC---------cEEEEcCCHHHHHH--hcCCCC
Confidence 58999999999999999874 5557999999999999999988754322 69999999876421 122567
Q ss_pred CeeEEEEcccccccCC----CHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHH
Q 024797 165 PFDICSCQFAMHYSWS----TEARARRALANVSALLRPGGTFIGTMPDANVIIK 214 (262)
Q Consensus 165 ~fD~V~~~~~l~~~~~----~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~ 214 (262)
+.|-|.+++.=-|... -.--...+++.+.++|+|||.|.+.+.+.+++..
T Consensus 119 sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 119 SLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred CeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 9999998884433200 0001257899999999999999999988876655
No 150
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.14 E-value=4.9e-10 Score=95.66 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=76.0
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
++.+|||+|||+|.++..++... ..|+|+|+|+.+++.|++++...+ . .+++++++|+.++... ..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~--------l-~~v~~~~~D~~~~~~~----~~ 238 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELG--------L-TNVQFQALDSTQFATA----QG 238 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcC--------C-CceEEEEcCHHHHHHh----cC
Confidence 56899999999999999887644 589999999999999999886422 2 3599999999775421 23
Q ss_pred CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHh
Q 024797 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (262)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~ 217 (262)
+.||+|+++-.-.-+ ...++ +....++|++.+++++ ++..+.+.+.
T Consensus 239 ~~~D~Vv~dPPr~G~------~~~~~-~~l~~~~~~~ivyvsc-~p~t~~rd~~ 284 (315)
T PRK03522 239 EVPDLVLVNPPRRGI------GKELC-DYLSQMAPRFILYSSC-NAQTMAKDLA 284 (315)
T ss_pred CCCeEEEECCCCCCc------cHHHH-HHHHHcCCCeEEEEEC-CcccchhHHh
Confidence 579999987432111 12222 2333467777666664 3333444433
No 151
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.13 E-value=6e-10 Score=93.76 Aligned_cols=130 Identities=22% Similarity=0.318 Sum_probs=92.5
Q ss_pred cccchhHHHHHHHHHHH-HhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCC
Q 024797 63 IIHLKKLNNWIKSVLVQ-LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS 141 (262)
Q Consensus 63 ~~~~~~~~~~~~~~l~~-~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~ 141 (262)
.+.+..+..-+.+.+.+ ....+|..|||.-||||.++.....-+ .+++|+|++..|++-|+.++...++.
T Consensus 175 f~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G-~~viG~Did~~mv~gak~Nl~~y~i~-------- 245 (347)
T COG1041 175 FFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMG-ARVIGSDIDERMVRGAKINLEYYGIE-------- 245 (347)
T ss_pred ccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcC-ceEeecchHHHHHhhhhhhhhhhCcC--------
Confidence 33334444444444443 446788999999999999988763333 37999999999999999998854321
Q ss_pred CCeEEEeC-cccccccccccCCCCCeeEEEEccccccc----CCC-HHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 142 FPARLICG-DCYEVHLDKVLADDAPFDICSCQFAMHYS----WST-EARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 142 ~~v~~~~~-d~~~~~~~~~~~~~~~fD~V~~~~~l~~~----~~~-~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
...+... |+..+|+ +++++|.|++..-.--. -.. .+...++++.++++|++||++++..|
T Consensus 246 -~~~~~~~~Da~~lpl-----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 246 -DYPVLKVLDATNLPL-----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred -ceeEEEecccccCCC-----CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 2434444 9999987 56689999986522111 001 24578899999999999999999888
No 152
>PRK03612 spermidine synthase; Provisional
Probab=99.13 E-value=4.5e-10 Score=101.96 Aligned_cols=117 Identities=15% Similarity=0.049 Sum_probs=82.8
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCC-CeEEEEeCChhHHHHHHHH--hccCccccccccCCCCCeEEEeCcccccccccc
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTR--YNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (262)
+++.+|||+|||+|..+..+++.+. .+++++|+++++++.++++ +.+.+.. .-...+++++.+|+.+.-..
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~----~~~dprv~vi~~Da~~~l~~-- 369 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGG----ALDDPRVTVVNDDAFNWLRK-- 369 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcc----ccCCCceEEEEChHHHHHHh--
Confidence 4678999999999998888877654 6899999999999999983 3211100 00135689999998764221
Q ss_pred cCCCCCeeEEEEcccccccCC-CHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 160 LADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
.+++||+|+++........ ..-.-.++++.+.+.|+|||.+++...
T Consensus 370 --~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 370 --LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred --CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 3478999999864332100 001125688999999999999998654
No 153
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.12 E-value=4.8e-10 Score=90.53 Aligned_cols=95 Identities=18% Similarity=0.214 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
...++||||+|.|..+..++ ....+|+++|.|+.|....+++- .+ +.+..++.. .+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~kg----------------~~--vl~~~~w~~-----~~ 149 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSKKG----------------FT--VLDIDDWQQ-----TD 149 (265)
T ss_pred cCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHhCC----------------Ce--EEehhhhhc-----cC
Confidence 45689999999999999885 45668999999999987776642 22 223333332 35
Q ss_pred CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
.+||+|.|.+++... .++..+|+.+++.|+|+|++++.+
T Consensus 150 ~~fDvIscLNvLDRc----~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 150 FKFDVISCLNVLDRC----DRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred CceEEEeehhhhhcc----CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 689999999999877 778999999999999999998764
No 154
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.11 E-value=8.3e-10 Score=86.70 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=85.5
Q ss_pred HHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (262)
Q Consensus 76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (262)
+|.+.....+.+|||||||+|.++..+++. +.-...-.|.++..+.-.+....+.+..| +. .-+..|+...
T Consensus 17 vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~N-----v~---~P~~lDv~~~ 88 (204)
T PF06080_consen 17 VLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPN-----VR---PPLALDVSAP 88 (204)
T ss_pred HHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcc-----cC---CCeEeecCCC
Confidence 444443344446999999999999999874 44467889999988766666555433322 11 1345555444
Q ss_pred ccccc---cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 155 HLDKV---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 155 ~~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
+.... ....+.||+|+|.+++|.+ +....+.+|+.+.++|++||.|++.-|
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~--p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINMLHIS--PWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred CCccccccccCCCCcceeeehhHHHhc--CHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 22111 0135689999999999977 888899999999999999999998643
No 155
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.10 E-value=3.8e-10 Score=88.23 Aligned_cols=100 Identities=18% Similarity=0.268 Sum_probs=62.4
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
++...|-|+|||.+.++..+ ...-.|...|+-.. +-.+..+|+...|+ +
T Consensus 71 ~~~~viaD~GCGdA~la~~~--~~~~~V~SfDLva~------------------------n~~Vtacdia~vPL-----~ 119 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAV--PNKHKVHSFDLVAP------------------------NPRVTACDIANVPL-----E 119 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH----S---EEEEESS-S------------------------STTEEES-TTS-S-------
T ss_pred CCCEEEEECCCchHHHHHhc--ccCceEEEeeccCC------------------------CCCEEEecCccCcC-----C
Confidence 34579999999999877554 22236999998541 12367899999998 7
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe-----CChHHHHHHHhh
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM-----PDANVIIKKLRE 218 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~-----~~~~~~~~~~~~ 218 (262)
++++|++++..++.. .+...++.++.|+||+||.|.|.- .+.+.+.+.+..
T Consensus 120 ~~svDv~VfcLSLMG-----Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~ 175 (219)
T PF05148_consen 120 DESVDVAVFCLSLMG-----TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKK 175 (219)
T ss_dssp TT-EEEEEEES---S-----S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHC
T ss_pred CCceeEEEEEhhhhC-----CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHH
Confidence 899999999888864 467889999999999999998764 344555555543
No 156
>PLN02476 O-methyltransferase
Probab=99.09 E-value=2.1e-09 Score=89.05 Aligned_cols=107 Identities=13% Similarity=0.171 Sum_probs=83.8
Q ss_pred cCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
.++.+|||+|+|+|..+..++.. ..++++.+|.+++.++.|++.+... ++..+++++.+|+.+.- ..+.
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a--------Gl~~~I~li~GdA~e~L-~~l~ 187 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA--------GVSHKVNVKHGLAAESL-KSMI 187 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCcEEEEEcCHHHHH-HHHH
Confidence 46789999999999988888763 3568999999999999999999854 33457999999986531 1110
Q ss_pred --CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 161 --ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 161 --~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
...++||+|++... .......+..+.+.|+|||.+++.
T Consensus 188 ~~~~~~~FD~VFIDa~-------K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 188 QNGEGSSYDFAFVDAD-------KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred hcccCCCCCEEEECCC-------HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 01368999998763 356788899999999999999986
No 157
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.07 E-value=3.2e-09 Score=83.14 Aligned_cols=128 Identities=23% Similarity=0.244 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHH-HhccCCCeEEEecCCCCcchHHHHh-cCCC---------eEEEEeCChhHHHHHHHHhccCccccc
Q 024797 67 KKLNNWIKSVLVQ-LYARRGDVVLDLACGKGGDLIKWDK-AKIG---------YYVGIDIAEGSIEDCRTRYNGDADHHQ 135 (262)
Q Consensus 67 ~~~~~~~~~~l~~-~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~---------~v~gvD~s~~~~~~a~~~~~~~~~~~~ 135 (262)
..++..+...+.. ....++..|||..||+|.++.+.+. .... .++|+|+++++++.|++++...
T Consensus 10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a----- 84 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA----- 84 (179)
T ss_dssp TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT-----
T ss_pred CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc-----
Confidence 4444555544443 3456788999999999999887654 2222 2899999999999999998743
Q ss_pred cccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCC----HHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST----EARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 136 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~----~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
+....+.+.++|+..++. .++.+|+|+++.-.-.-... .+-...+++++.++|++ ..++++..+
T Consensus 85 ---g~~~~i~~~~~D~~~l~~-----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~ 152 (179)
T PF01170_consen 85 ---GVEDYIDFIQWDARELPL-----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN 152 (179)
T ss_dssp ---T-CGGEEEEE--GGGGGG-----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC
T ss_pred ---ccCCceEEEecchhhccc-----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC
Confidence 334568999999999985 57899999998644322111 23346678999999999 444444443
No 158
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.06 E-value=1.2e-09 Score=94.44 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=90.7
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
.|.+|||+-|=||.++...+..+..+|++||+|..+++.|++++.-.+.. ..++.|+++|+..+-- ......
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~-------~~~~~~i~~Dvf~~l~-~~~~~g 288 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD-------GDRHRFIVGDVFKWLR-KAERRG 288 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC-------ccceeeehhhHHHHHH-HHHhcC
Confidence 48999999999999999998888889999999999999999998743221 3458899999977532 111134
Q ss_pred CCeeEEEEccc-c----cccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797 164 APFDICSCQFA-M----HYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 164 ~~fD~V~~~~~-l----~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 209 (262)
.+||+|++.-. + ...+....+...++..+.++|+|||.+++++...
T Consensus 289 ~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 289 EKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 58999998531 1 1113345778899999999999999999887643
No 159
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.05 E-value=5.7e-09 Score=91.12 Aligned_cols=115 Identities=14% Similarity=0.103 Sum_probs=80.7
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
.++.+|||+|||+|.++..++.. ...|+|+|+++.+++.|++++...+ . .+++++++|+.+.... .
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~--------~-~~~~~~~~d~~~~~~~----~ 297 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLG--------L-DNLSFAALDSAKFATA----Q 297 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcC--------C-CcEEEEECCHHHHHHh----c
Confidence 35679999999999999988754 3589999999999999999886322 1 3699999998764321 1
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhhh
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREV 219 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~ 219 (262)
..+||+|+++---..+ ...++..+. .++|++.+++++ |+..+.+.+..-
T Consensus 298 ~~~~D~vi~DPPr~G~------~~~~l~~l~-~~~p~~ivyvsc-~p~TlaRDl~~L 346 (374)
T TIGR02085 298 MSAPELVLVNPPRRGI------GKELCDYLS-QMAPKFILYSSC-NAQTMAKDIAEL 346 (374)
T ss_pred CCCCCEEEECCCCCCC------cHHHHHHHH-hcCCCeEEEEEe-CHHHHHHHHHHh
Confidence 2459999987543322 234445454 478988887775 555665555543
No 160
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.04 E-value=3.9e-09 Score=87.05 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=83.6
Q ss_pred CCeEEEecCCCCcchHHH----HhcC------CCeEEEEeCChhHHHHHHHHhcc-----Cccc------cccc------
Q 024797 85 GDVVLDLACGKGGDLIKW----DKAK------IGYYVGIDIAEGSIEDCRTRYNG-----DADH------HQRR------ 137 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l----~~~~------~~~v~gvD~s~~~~~~a~~~~~~-----~~~~------~~~~------ 137 (262)
.-+|+-+||++|.-.-.+ .+.. .-+++|+|+|..+++.|+...-. .+.. .+..
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 569999999999853322 1211 23699999999999999865422 1111 0000
Q ss_pred ---cCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 138 ---KKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 138 ---~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
..+...|.|.+.|+...++ ..+.||+|+|.+++.|+ +.+.+.+++..++..|+|||+|++.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~-----~~~~fD~IfCRNVLIYF--d~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP-----FLGKFDLIFCRNVLIYF--DEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc-----ccCCCCEEEEcceEEee--CHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 1222457888888766552 25789999999999999 8899999999999999999999985
No 161
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.03 E-value=1.1e-09 Score=87.24 Aligned_cols=108 Identities=22% Similarity=0.275 Sum_probs=82.1
Q ss_pred cCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
....+||||||++|.-+..++.. ..++++.+|++++..+.|++.+... ++..+++++.+|+.+.-- .+.
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a--------g~~~~I~~~~gda~~~l~-~l~ 114 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA--------GLDDRIEVIEGDALEVLP-ELA 114 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT--------TGGGGEEEEES-HHHHHH-HHH
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc--------CCCCcEEEEEeccHhhHH-HHH
Confidence 46779999999999988888763 4578999999999999999988743 334579999999865311 110
Q ss_pred --CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 161 --ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 161 --~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
.+.++||+|++...- ......+..+.+.|+|||.+++..
T Consensus 115 ~~~~~~~fD~VFiDa~K-------~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 115 NDGEEGQFDFVFIDADK-------RNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp HTTTTTSEEEEEEESTG-------GGHHHHHHHHHHHEEEEEEEEEET
T ss_pred hccCCCceeEEEEcccc-------cchhhHHHHHhhhccCCeEEEEcc
Confidence 024689999987743 345678888899999999999874
No 162
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.03 E-value=5.7e-10 Score=87.78 Aligned_cols=107 Identities=17% Similarity=0.324 Sum_probs=90.7
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
....++|||||-|.....+.....++++-+|.|-.|++.++..-. ....+...++|-+.+++ .+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-----------p~i~~~~~v~DEE~Ldf-----~e 135 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-----------PSIETSYFVGDEEFLDF-----KE 135 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-----------CceEEEEEecchhcccc-----cc
Confidence 456899999999999988877788899999999999999987532 12336678899888887 78
Q ss_pred CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (262)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~ 210 (262)
+++|+|+++..+|+. .+....+.+++..|||+|.++.++-..+
T Consensus 136 ns~DLiisSlslHW~----NdLPg~m~~ck~~lKPDg~Fiasmlggd 178 (325)
T KOG2940|consen 136 NSVDLIISSLSLHWT----NDLPGSMIQCKLALKPDGLFIASMLGGD 178 (325)
T ss_pred cchhhhhhhhhhhhh----ccCchHHHHHHHhcCCCccchhHHhccc
Confidence 999999999999988 7888999999999999999998765444
No 163
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.02 E-value=2.5e-09 Score=89.08 Aligned_cols=139 Identities=17% Similarity=0.306 Sum_probs=92.5
Q ss_pred ccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCC-C
Q 024797 64 IHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-F 142 (262)
Q Consensus 64 ~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~ 142 (262)
...+..+.|+... ..+.+|||+-|=+|.++...+..+..+|+.||.|+.+++.+++++.-. ++. .
T Consensus 109 lDqR~nR~~v~~~------~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lN--------g~~~~ 174 (286)
T PF10672_consen 109 LDQRENRKWVRKY------AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALN--------GLDLD 174 (286)
T ss_dssp GGGHHHHHHHHHH------CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHT--------T-CCT
T ss_pred HHHHhhHHHHHHH------cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc--------CCCcc
Confidence 3345555555543 468899999999999999888778778999999999999999998732 222 4
Q ss_pred CeEEEeCcccccccccccCCCCCeeEEEEccc-cc-ccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC----hHHHHHHH
Q 024797 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFA-MH-YSWSTEARARRALANVSALLRPGGTFIGTMPD----ANVIIKKL 216 (262)
Q Consensus 143 ~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~-l~-~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~----~~~~~~~~ 216 (262)
+++++++|+.+.-- ... ..++||+|++.-- +. .-+.-..+...++..+.++|+|||.|++++.+ .+.+.+.+
T Consensus 175 ~~~~~~~Dvf~~l~-~~~-~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~ 252 (286)
T PF10672_consen 175 RHRFIQGDVFKFLK-RLK-KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAV 252 (286)
T ss_dssp CEEEEES-HHHHHH-HHH-HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHH
T ss_pred ceEEEecCHHHHHH-HHh-cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHH
Confidence 68999999876421 111 3468999998531 10 00112356788999999999999999887754 34444444
Q ss_pred hh
Q 024797 217 RE 218 (262)
Q Consensus 217 ~~ 218 (262)
..
T Consensus 253 ~~ 254 (286)
T PF10672_consen 253 AE 254 (286)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 164
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.02 E-value=2.1e-09 Score=89.12 Aligned_cols=116 Identities=17% Similarity=0.210 Sum_probs=86.9
Q ss_pred HHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (262)
Q Consensus 74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 153 (262)
+.++.......+..|||+|||+|.++.+.+..+.++|++++-|+ |.+.|++.... +++..++.++.+.+++
T Consensus 167 ~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~--------N~~~~rItVI~GKiEd 237 (517)
T KOG1500|consen 167 RAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVAS--------NNLADRITVIPGKIED 237 (517)
T ss_pred HHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhc--------CCccceEEEccCcccc
Confidence 34444444457889999999999888888788888999999876 99999998773 4567789999999999
Q ss_pred cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
+.+ +++.|+|++-- +.+++.+..-.+.. -.+++.|+|.|.++-++
T Consensus 238 ieL------PEk~DviISEP-MG~mL~NERMLEsY-l~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 238 IEL------PEKVDVIISEP-MGYMLVNERMLESY-LHARKWLKPNGKMFPTV 282 (517)
T ss_pred ccC------chhccEEEecc-chhhhhhHHHHHHH-HHHHhhcCCCCcccCcc
Confidence 886 57899998643 33333344434433 44569999999987654
No 165
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.01 E-value=4.6e-09 Score=83.78 Aligned_cols=107 Identities=21% Similarity=0.226 Sum_probs=84.0
Q ss_pred ccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEe-Cccccccccc
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVHLDK 158 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~ 158 (262)
..++.+|||+|.+.|.-++.++.. ..++++.+|+++++.+.|++++.+.+. ..++..+. +|+.+.-..
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~--------~~~i~~~~~gdal~~l~~- 127 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV--------DDRIELLLGGDALDVLSR- 127 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC--------cceEEEEecCcHHHHHHh-
Confidence 457889999999999888877763 367899999999999999999986544 44577777 576543211
Q ss_pred ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
...++||+|++.. ...+...++..+.+.|+|||.+++..
T Consensus 128 --~~~~~fDliFIDa-------dK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 128 --LLDGSFDLVFIDA-------DKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred --ccCCCccEEEEeC-------ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 1368999999766 34567889999999999999999863
No 166
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.00 E-value=5.5e-09 Score=87.34 Aligned_cols=85 Identities=14% Similarity=0.130 Sum_probs=65.5
Q ss_pred HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (262)
Q Consensus 73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 152 (262)
+..++..+...++.+|||+|||+|.++..+++... +|+|+|++++|++.+++++. ..+++++++|+.
T Consensus 31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~------------~~~v~~i~~D~~ 97 (272)
T PRK00274 31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFA------------EDNLTIIEGDAL 97 (272)
T ss_pred HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhc------------cCceEEEEChhh
Confidence 44455555566788999999999999998887644 89999999999999988764 246999999998
Q ss_pred ccccccccCCCCCeeEEEEcccc
Q 024797 153 EVHLDKVLADDAPFDICSCQFAM 175 (262)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l 175 (262)
++++ ++-.++.|+++...
T Consensus 98 ~~~~-----~~~~~~~vv~NlPY 115 (272)
T PRK00274 98 KVDL-----SELQPLKVVANLPY 115 (272)
T ss_pred cCCH-----HHcCcceEEEeCCc
Confidence 8765 22115788776543
No 167
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.00 E-value=5.3e-09 Score=93.20 Aligned_cols=121 Identities=18% Similarity=0.197 Sum_probs=81.2
Q ss_pred HHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc
Q 024797 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (262)
Q Consensus 77 l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 156 (262)
+..+...++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++...+ ..+++++++|+.+..
T Consensus 285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~---------~~nv~~~~~d~~~~l- 353 (431)
T TIGR00479 285 LEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNG---------IANVEFLAGTLETVL- 353 (431)
T ss_pred HHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhC---------CCceEEEeCCHHHHH-
Confidence 33333456789999999999999988754 4589999999999999999876322 236999999986531
Q ss_pred ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHH
Q 024797 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKL 216 (262)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~ 216 (262)
.......++||+|++.-.-.-+ ...+++.+.+ ++|++.+++++ |+..+...+
T Consensus 354 ~~~~~~~~~~D~vi~dPPr~G~------~~~~l~~l~~-l~~~~ivyvsc-~p~tlard~ 405 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPRKGC------AAEVLRTIIE-LKPERIVYVSC-NPATLARDL 405 (431)
T ss_pred HHHHhcCCCCCEEEECcCCCCC------CHHHHHHHHh-cCCCEEEEEcC-CHHHHHHHH
Confidence 1111134579999976532211 2345555444 78988777764 455554443
No 168
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.98 E-value=6.1e-09 Score=92.37 Aligned_cols=103 Identities=21% Similarity=0.251 Sum_probs=72.4
Q ss_pred CCeEEEecCCCCcchHHHHhcC-----CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797 85 GDVVLDLACGKGGDLIKWDKAK-----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (262)
+..|||+|||+|-++...++.. ..+|++|+-++.++...+++... .++..+|+++++|++++..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~--------n~w~~~V~vi~~d~r~v~l--- 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA--------NGWGDKVTVIHGDMREVEL--- 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH--------TTTTTTEEEEES-TTTSCH---
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh--------cCCCCeEEEEeCcccCCCC---
Confidence 5689999999998877665542 45899999999888777665442 3456779999999999886
Q ss_pred cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li 203 (262)
+.++|+||+=..= .+. ..+.....|..+.+.|+|||.++
T Consensus 256 ---pekvDIIVSElLG-sfg-~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 256 ---PEKVDIIVSELLG-SFG-DNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---SS-EEEEEE---B-TTB-TTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ---CCceeEEEEeccC-Ccc-ccccCHHHHHHHHhhcCCCCEEe
Confidence 4699999963311 111 11344567889999999999876
No 169
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.98 E-value=3.6e-09 Score=87.80 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (262)
Q Consensus 71 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d 150 (262)
.+++.++..+...++.+|||+|||+|.++..+++. ..+++|+|+++.+++.+++++.. ..+++++++|
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~-----------~~~v~ii~~D 83 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA-----------AGNVEIIEGD 83 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc-----------CCCEEEEEec
Confidence 34555665555667889999999999999998876 45899999999999999987752 2469999999
Q ss_pred ccccccccccCCCCCeeEEEEccccc
Q 024797 151 CYEVHLDKVLADDAPFDICSCQFAMH 176 (262)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~ 176 (262)
+..+++ ..||.|+++...+
T Consensus 84 ~~~~~~-------~~~d~Vv~NlPy~ 102 (258)
T PRK14896 84 ALKVDL-------PEFNKVVSNLPYQ 102 (258)
T ss_pred cccCCc-------hhceEEEEcCCcc
Confidence 988765 3479998876654
No 170
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.97 E-value=1e-09 Score=89.30 Aligned_cols=102 Identities=25% Similarity=0.402 Sum_probs=83.7
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
..+..++|+|||.|..+.. .+...++|.|++...+..+++.-. .....+|+..+|. .
T Consensus 44 ~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~~~---------------~~~~~ad~l~~p~-----~ 100 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRSGG---------------DNVCRADALKLPF-----R 100 (293)
T ss_pred CCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccCCC---------------ceeehhhhhcCCC-----C
Confidence 4588999999999976542 344579999999988888876432 2578899999887 6
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
+.+||.++...++||+ .+......+++++.++|+|||...+.+..
T Consensus 101 ~~s~d~~lsiavihhl-sT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 101 EESFDAALSIAVIHHL-STRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred CCccccchhhhhhhhh-hhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 8999999999999997 56667888999999999999998887653
No 171
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.97 E-value=5.9e-09 Score=81.22 Aligned_cols=115 Identities=20% Similarity=0.146 Sum_probs=73.1
Q ss_pred ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
..++.+|||+|||+|..++.++.. +...|+.+|..+ .++..+.++...+. ....++.+...|..+.......
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~------~~~~~v~v~~L~Wg~~~~~~~~ 115 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS------LLDGRVSVRPLDWGDELDSDLL 115 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------------EEEE--TTS-HHHHHH
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc------cccccccCcEEEecCccccccc
Confidence 457889999999999888877765 566899999998 99988888763211 1234577777776442111111
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
+..+||+|++.-++.. .+....+++.+.+.|+++|.+++..+.
T Consensus 116 -~~~~~D~IlasDv~Y~----~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 116 -EPHSFDVILASDVLYD----EELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp -S-SSBSEEEEES--S-----GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred -ccccCCEEEEecccch----HHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 4568999999998874 367888999999999999998777653
No 172
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.97 E-value=7.4e-09 Score=81.77 Aligned_cols=111 Identities=8% Similarity=-0.096 Sum_probs=77.6
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
++.+|||++||+|.++..++..+...|+++|.++.+++.+++++... +...+++++++|+...-. ......
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~--------~~~~~~~~~~~D~~~~l~-~~~~~~ 119 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALL--------KSGEQAEVVRNSALRALK-FLAKKP 119 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh--------CCcccEEEEehhHHHHHH-HhhccC
Confidence 57899999999999999998777778999999999999999987632 223458899999855311 111012
Q ss_pred CCeeEEEEcccccccCCCHHHHHHHHHHH--HhccCCCcEEEEEeCC
Q 024797 164 APFDICSCQFAMHYSWSTEARARRALANV--SALLRPGGTFIGTMPD 208 (262)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~--~~~L~~gG~li~~~~~ 208 (262)
..||+|+..--+.. .....++..+ ..+|+++|.+++..+.
T Consensus 120 ~~~dvv~~DPPy~~-----~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 120 TFDNVIYLDPPFFN-----GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CCceEEEECcCCCC-----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 34788887654432 1123334433 3478999999987654
No 173
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.95 E-value=9.2e-09 Score=77.17 Aligned_cols=119 Identities=16% Similarity=0.155 Sum_probs=95.2
Q ss_pred HHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (262)
Q Consensus 74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 151 (262)
+++...+....+..|||+|.|+|-++..+++. ....++.++.|++.+....+.... +.++.+|+
T Consensus 38 ~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~--------------~~ii~gda 103 (194)
T COG3963 38 RKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG--------------VNIINGDA 103 (194)
T ss_pred HHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC--------------ccccccch
Confidence 44555667778889999999999999999875 344699999999999999998762 66899998
Q ss_pred cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
.++.-.-.......||.|++..-+-.+ +.....++++.+...|.+||.++--...
T Consensus 104 ~~l~~~l~e~~gq~~D~viS~lPll~~--P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 104 FDLRTTLGEHKGQFFDSVISGLPLLNF--PMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hhHHHHHhhcCCCeeeeEEeccccccC--cHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 877621122256789999998877666 6777889999999999999998865544
No 174
>PLN02672 methionine S-methyltransferase
Probab=98.95 E-value=7.1e-09 Score=99.75 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=84.1
Q ss_pred CCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCcccc-------ccccCCCCCeEEEeCccccccc
Q 024797 85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHH-------QRRKKFSFPARLICGDCYEVHL 156 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-------~~~~~~~~~v~~~~~d~~~~~~ 156 (262)
+.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|++++...+... ...+....+++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 468999999999999988764 44689999999999999999886422110 0001223469999999876431
Q ss_pred ccccCCCCCeeEEEEcccc--------------c-------c-----c--------CCCHHHHHHHHHHHHhccCCCcEE
Q 024797 157 DKVLADDAPFDICSCQFAM--------------H-------Y-----S--------WSTEARARRALANVSALLRPGGTF 202 (262)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l--------------~-------~-----~--------~~~~~~~~~~l~~~~~~L~~gG~l 202 (262)
. ...+||+|+++--. . | . -+.....++++.++.++|+|||.+
T Consensus 199 ~----~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l 274 (1082)
T PLN02672 199 D----NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIM 274 (1082)
T ss_pred c----cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEE
Confidence 0 12369999986421 0 0 0 112233478889999999999999
Q ss_pred EEEeCCh
Q 024797 203 IGTMPDA 209 (262)
Q Consensus 203 i~~~~~~ 209 (262)
++.+...
T Consensus 275 ~lEiG~~ 281 (1082)
T PLN02672 275 IFNMGGR 281 (1082)
T ss_pred EEEECcc
Confidence 9998643
No 175
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.94 E-value=3.5e-08 Score=80.90 Aligned_cols=112 Identities=21% Similarity=0.173 Sum_probs=88.3
Q ss_pred CCCeEEEecCCCCcchHHHHhc-C--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 84 RGDVVLDLACGKGGDLIKWDKA-K--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~-~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
.+-+||||+||.|+.....+.. + ...+...|.|+..++..++.+.+.+. ..-++|.++|+++......
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL--------~~i~~f~~~dAfd~~~l~~- 205 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL--------EDIARFEQGDAFDRDSLAA- 205 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC--------ccceEEEecCCCCHhHhhc-
Confidence 5669999999999998887663 2 35799999999999999999886443 4446999999987532111
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
-+...|++++++.++.+ ++.+.....+..+.+.+.|||++|.+.
T Consensus 206 -l~p~P~l~iVsGL~ElF-~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 206 -LDPAPTLAIVSGLYELF-PDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred -cCCCCCEEEEecchhhC-CcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 24557999999988876 444557778999999999999999986
No 176
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.94 E-value=3.9e-09 Score=84.59 Aligned_cols=86 Identities=19% Similarity=0.310 Sum_probs=68.9
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
.....|-|+|||.+.++. .....|+.+|+-+ .+-.++.+|+.+.|+ +
T Consensus 179 ~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a------------------------~~~~V~~cDm~~vPl-----~ 225 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS----SERHKVHSFDLVA------------------------VNERVIACDMRNVPL-----E 225 (325)
T ss_pred cCceEEEecccchhhhhh----ccccceeeeeeec------------------------CCCceeeccccCCcC-----c
Confidence 345689999999987554 3444699999843 124578999999998 7
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
+++.|++++..++.- .++..++.++.|+|++||.++|.-
T Consensus 226 d~svDvaV~CLSLMg-----tn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 226 DESVDVAVFCLSLMG-----TNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred cCcccEEEeeHhhhc-----ccHHHHHHHHHHHhccCceEEEEe
Confidence 999999998877753 578899999999999999998864
No 177
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.90 E-value=1.7e-08 Score=82.64 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=82.7
Q ss_pred cCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
.+..+|||+|++.|.-+..++.. ..++++.+|.+++..+.|++.+... ++..+++++.+|+.+.- ..+.
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a--------g~~~~I~~~~G~a~e~L-~~l~ 148 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA--------GVAHKIDFREGPALPVL-DQMI 148 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC--------CCCCceEEEeccHHHHH-HHHH
Confidence 46779999999999888877653 4568999999999999999998843 34567999999986531 1111
Q ss_pred C---CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 161 A---DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 161 ~---~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
. ..++||+|++... .......+..+.+.|+|||.+++.
T Consensus 149 ~~~~~~~~fD~iFiDad-------K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 149 EDGKYHGTFDFIFVDAD-------KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred hccccCCcccEEEecCC-------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 0 1368999998763 355677888899999999999875
No 178
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.89 E-value=8.3e-09 Score=86.83 Aligned_cols=89 Identities=17% Similarity=0.329 Sum_probs=68.8
Q ss_pred HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (262)
Q Consensus 72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 151 (262)
++..++......++.+|||||||+|.++..++.. ..+++++|+++.+++.+++++... +...+++++++|+
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~--------~~~~~v~ii~~Da 94 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNS--------PLASKLEVIEGDA 94 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhc--------CCCCcEEEEECCH
Confidence 4555666666678899999999999999988764 357999999999999999887521 1234699999999
Q ss_pred cccccccccCCCCCeeEEEEccccc
Q 024797 152 YEVHLDKVLADDAPFDICSCQFAMH 176 (262)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~ 176 (262)
...++ ..||+|+++...+
T Consensus 95 l~~~~-------~~~d~VvaNlPY~ 112 (294)
T PTZ00338 95 LKTEF-------PYFDVCVANVPYQ 112 (294)
T ss_pred hhhcc-------cccCEEEecCCcc
Confidence 87654 3689998766544
No 179
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.87 E-value=1.9e-08 Score=78.93 Aligned_cols=114 Identities=19% Similarity=0.144 Sum_probs=80.1
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
-++.++||+.||+|.++.+.+..+..+|+.||.++.++...++++...+. ..++.++++|+...-.. ....
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~--------~~~~~v~~~d~~~~l~~-~~~~ 111 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL--------EDKIRVIKGDAFKFLLK-LAKK 111 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT---------GGGEEEEESSHHHHHHH-HHHC
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC--------CcceeeeccCHHHHHHh-hccc
Confidence 37899999999999999998888888999999999999999999874332 33578889986543211 1013
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHH--hccCCCcEEEEEeCCh
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMPDA 209 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~--~~L~~gG~li~~~~~~ 209 (262)
..+||+|++.--...- .....++..+. .+|+++|.+++.....
T Consensus 112 ~~~fDiIflDPPY~~~----~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 112 GEKFDIIFLDPPYAKG----LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp TS-EEEEEE--STTSC----HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCceEEEECCCcccc----hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 6789999988755432 11466777776 7999999999987654
No 180
>PLN02823 spermine synthase
Probab=98.87 E-value=7.7e-08 Score=82.32 Aligned_cols=115 Identities=18% Similarity=0.198 Sum_probs=81.2
Q ss_pred cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
..+.+||.+|+|.|..+..+++. ...+++.+|+++++++.|++.+..... .-...+++++.+|+..+-..
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~-----~~~dprv~v~~~Da~~~L~~---- 172 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNRE-----AFCDKRLELIINDARAELEK---- 172 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccc-----cccCCceEEEEChhHHHHhh----
Confidence 35679999999999888888774 456799999999999999998753110 01146799999998775321
Q ss_pred CCCCeeEEEEcccccccCCCH--HHHHHHHH-HHHhccCCCcEEEEEe
Q 024797 162 DDAPFDICSCQFAMHYSWSTE--ARARRALA-NVSALLRPGGTFIGTM 206 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~--~~~~~~l~-~~~~~L~~gG~li~~~ 206 (262)
..++||+|++...-...-.+. -.-..+++ .+.+.|+|||++++..
T Consensus 173 ~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 173 RDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred CCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 357899999874211000000 01246777 8999999999998764
No 181
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.83 E-value=3.4e-07 Score=77.72 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=84.4
Q ss_pred cCCCeEEEecCCCCcchHHHHhc-----CCCeEEEEeCChhHHHHHHHHhccCccccccccCCC-CCeEEEeCccccccc
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHL 156 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~ 156 (262)
.++..|+|+|||+|+-+..++.. ....++++|+|.++++.+.+++... ..+ ..+.-+++|..+...
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~--------~~p~l~v~~l~gdy~~~l~ 146 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG--------NFSHVRCAGLLGTYDDGLA 146 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc--------cCCCeEEEEEEecHHHHHh
Confidence 46678999999999987766552 2346999999999999999887611 111 234458888755311
Q ss_pred --ccccCCCCCeeEEEEcc-cccccCCCHHHHHHHHHHHHh-ccCCCcEEEEEeC---ChHHHHHHHh
Q 024797 157 --DKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSA-LLRPGGTFIGTMP---DANVIIKKLR 217 (262)
Q Consensus 157 --~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~-~L~~gG~li~~~~---~~~~~~~~~~ 217 (262)
.... ......+|+..+ ++.++ ++.....+|+++++ .|+|||.|++.+. +.+.+...+.
T Consensus 147 ~l~~~~-~~~~~r~~~flGSsiGNf--~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~ 211 (319)
T TIGR03439 147 WLKRPE-NRSRPTTILWLGSSIGNF--SRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYN 211 (319)
T ss_pred hccccc-ccCCccEEEEeCccccCC--CHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhc
Confidence 0000 123356666655 77777 77888999999999 9999999999763 3444444443
No 182
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.82 E-value=2.7e-08 Score=89.96 Aligned_cols=122 Identities=11% Similarity=0.118 Sum_probs=89.2
Q ss_pred cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
..+..+||||||.|.++..++.. +...++|+|++...+..+.++....+. .|+.+++.|+..+.. . +
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l---------~N~~~~~~~~~~~~~--~-~ 413 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI---------TNFLLFPNNLDLILN--D-L 413 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC---------CeEEEEcCCHHHHHH--h-c
Confidence 35678999999999999999874 555799999999999888877654332 357788887653321 1 2
Q ss_pred CCCCeeEEEEcccccccCC----CHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHH
Q 024797 162 DDAPFDICSCQFAMHYSWS----TEARARRALANVSALLRPGGTFIGTMPDANVIIKKL 216 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~----~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~ 216 (262)
+++++|.|++++.--|... -.--...++..++++|+|||.+.+.+.+.++....+
T Consensus 414 ~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~ 472 (506)
T PRK01544 414 PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAI 472 (506)
T ss_pred CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 6788999998875433200 001126789999999999999999998887665543
No 183
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.82 E-value=5.8e-08 Score=80.39 Aligned_cols=86 Identities=22% Similarity=0.189 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (262)
Q Consensus 71 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d 150 (262)
.++..++..+...++.+|||+|||+|.++..+++.. ..++++|+++.+++.+++++.. ..+++++++|
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~-----------~~~v~v~~~D 83 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL-----------YERLEVIEGD 83 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc-----------CCcEEEEECc
Confidence 345556666666678899999999999999887654 4699999999999999887641 3458999999
Q ss_pred ccccccccccCCCCCee---EEEEcccc
Q 024797 151 CYEVHLDKVLADDAPFD---ICSCQFAM 175 (262)
Q Consensus 151 ~~~~~~~~~~~~~~~fD---~V~~~~~l 175 (262)
+...++ + .+| +|+++..+
T Consensus 84 ~~~~~~-----~--~~d~~~~vvsNlPy 104 (253)
T TIGR00755 84 ALKVDL-----P--DFPKQLKVVSNLPY 104 (253)
T ss_pred hhcCCh-----h--HcCCcceEEEcCCh
Confidence 988765 2 355 67665543
No 184
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3.1e-08 Score=77.16 Aligned_cols=116 Identities=21% Similarity=0.272 Sum_probs=81.9
Q ss_pred HHHHHh--ccCCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCC-CCCeEEEeC
Q 024797 76 VLVQLY--ARRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICG 149 (262)
Q Consensus 76 ~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~ 149 (262)
++..+. ..|+.+.||+|+|+|.++.-++. ......+|||.-++.++.+++++...-........+ ..++.++.+
T Consensus 72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG 151 (237)
T KOG1661|consen 72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG 151 (237)
T ss_pred HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence 344444 57999999999999998876653 233345999999999999999886432100001111 245788899
Q ss_pred cccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 150 d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
|...... +..+||.|.+..+.. +..+++...|++||.+++-.
T Consensus 152 Dgr~g~~-----e~a~YDaIhvGAaa~----------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 152 DGRKGYA-----EQAPYDAIHVGAAAS----------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CccccCC-----ccCCcceEEEccCcc----------ccHHHHHHhhccCCeEEEee
Confidence 9877654 678999999876543 34466778899999998854
No 185
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.81 E-value=3.7e-08 Score=79.65 Aligned_cols=96 Identities=18% Similarity=0.184 Sum_probs=60.5
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeE-EEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR-LICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~ 161 (262)
.++.+|||+|||+|.++..+++.+..+|+|+|+++.|+....+.- .++. +...|+......+...
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~--------------~~v~~~~~~ni~~~~~~~~~~ 139 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD--------------ERVKVLERTNIRYVTPADIFP 139 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC--------------CCeeEeecCCcccCCHhHcCC
Confidence 367799999999999999998877778999999998887622211 1122 3333444322211110
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
.-..+|+++++.. .++..+.+.|++ |.+++-
T Consensus 140 d~~~~DvsfiS~~------------~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 140 DFATFDVSFISLI------------SILPELDLLLNP-NDLTLL 170 (228)
T ss_pred CceeeeEEEeehH------------hHHHHHHHHhCc-CeEEEE
Confidence 1235665554332 246788899999 776654
No 186
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.81 E-value=6.3e-08 Score=82.13 Aligned_cols=85 Identities=18% Similarity=0.214 Sum_probs=57.8
Q ss_pred CCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEe-CcccccccccccC
Q 024797 84 RGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVHLDKVLA 161 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~ 161 (262)
++.+|||||||+|.....++. ....+++|+|+++.+++.|++++... .++..++.+.+ .|...+. .....
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N-------p~l~~~I~~~~~~~~~~i~-~~i~~ 185 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN-------PGLNGAIRLRLQKDSKAIF-KGIIH 185 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc-------cCCcCcEEEEEccchhhhh-hcccc
Confidence 457999999999976666554 33457999999999999999988731 02445677654 3332221 11111
Q ss_pred CCCCeeEEEEccccc
Q 024797 162 DDAPFDICSCQFAMH 176 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~ 176 (262)
+.+.||+|+|+--++
T Consensus 186 ~~~~fDlivcNPPf~ 200 (321)
T PRK11727 186 KNERFDATLCNPPFH 200 (321)
T ss_pred cCCceEEEEeCCCCc
Confidence 457899999997665
No 187
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.80 E-value=7.9e-08 Score=85.71 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=84.6
Q ss_pred hccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797 81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (262)
.+.++.+|||++||+|.-+..++.. ..+.+++.|+++.-++..++++...+.. ++.+.+.|...+...
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~---------nv~v~~~D~~~~~~~- 179 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS---------NVALTHFDGRVFGAA- 179 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---------eEEEEeCchhhhhhh-
Confidence 4578899999999999998888763 4568999999999999999998855433 378888887765321
Q ss_pred ccCCCCCeeEEEEccc------cccc------CC------CHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 159 VLADDAPFDICSCQFA------MHYS------WS------TEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~------l~~~------~~------~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
..+.||.|++..- +..- |. -...+.++|..+.+.|||||+|+-++..
T Consensus 180 ---~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 180 ---LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred ---chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 2467999995431 1110 00 0123478899999999999999888764
No 188
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.80 E-value=5e-08 Score=77.27 Aligned_cols=100 Identities=23% Similarity=0.301 Sum_probs=70.9
Q ss_pred ccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
..++.+|||+.||-|.++..+++ .....|+++|+++.+++..++++.. +++...+..+++|+..+.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~l--------Nkv~~~i~~~~~D~~~~~----- 165 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRL--------NKVENRIEVINGDAREFL----- 165 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHH--------TT-TTTEEEEES-GGG-------
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHH--------cCCCCeEEEEcCCHHHhc-----
Confidence 46789999999999999999987 3555799999999999999998873 345567899999998875
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li 203 (262)
+.+.+|-|+++..-. ...+|..+.+.+++||++-
T Consensus 166 -~~~~~drvim~lp~~--------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 166 -PEGKFDRVIMNLPES--------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp --TT-EEEEEE--TSS--------GGGGHHHHHHHEEEEEEEE
T ss_pred -CccccCEEEECChHH--------HHHHHHHHHHHhcCCcEEE
Confidence 368899998865322 2357788999999999864
No 189
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=6.1e-09 Score=76.22 Aligned_cols=78 Identities=23% Similarity=0.312 Sum_probs=63.4
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
-.|.+++|+|||.|.+.....-.....|+|+|+++++++.++++..+ ...++.++++|+.++.+ .
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeE----------fEvqidlLqcdildle~-----~ 111 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEE----------FEVQIDLLQCDILDLEL-----K 111 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHH----------hhhhhheeeeeccchhc-----c
Confidence 37889999999999887555445666899999999999999998774 24557899999988766 5
Q ss_pred CCCeeEEEEcccc
Q 024797 163 DAPFDICSCQFAM 175 (262)
Q Consensus 163 ~~~fD~V~~~~~l 175 (262)
.+.||.++.+--+
T Consensus 112 ~g~fDtaviNppF 124 (185)
T KOG3420|consen 112 GGIFDTAVINPPF 124 (185)
T ss_pred CCeEeeEEecCCC
Confidence 6889999987644
No 190
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.76 E-value=1e-07 Score=79.37 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=84.7
Q ss_pred CeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797 86 DVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (262)
Q Consensus 86 ~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (262)
.+||-||.|.|..+..+++.. ..+++.||+++..++.|++.+...... ....+++++..|..++--. ...
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~-----~~dpRv~i~i~Dg~~~v~~----~~~ 148 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG-----ADDPRVEIIIDDGVEFLRD----CEE 148 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc-----cCCCceEEEeccHHHHHHh----CCC
Confidence 699999999999999998854 668999999999999999998743211 1147799999998765321 234
Q ss_pred CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
+||+|++...-.--....-.-..+++.+++.|+++|+++....+
T Consensus 149 ~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 149 KFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred cCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 89999987643200000011367999999999999999987544
No 191
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.75 E-value=7.2e-08 Score=82.32 Aligned_cols=136 Identities=21% Similarity=0.314 Sum_probs=82.1
Q ss_pred CccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHh--------cCCCeEEEEeCChhHHHHHHHHhccCcc
Q 024797 61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK--------AKIGYYVGIDIAEGSIEDCRTRYNGDAD 132 (262)
Q Consensus 61 ~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~--------~~~~~v~gvD~s~~~~~~a~~~~~~~~~ 132 (262)
+..+.+..+...+..++ ...++.+|||.+||+|.++..+.. .....++|+|+++.++..|+.++.-.+.
T Consensus 26 G~~~TP~~i~~l~~~~~---~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~ 102 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLL---NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI 102 (311)
T ss_dssp GGC---HHHHHHHHHHH---TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH
T ss_pred ceeehHHHHHHHHHhhh---hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc
Confidence 34455666655544443 556677899999999999887765 2455799999999999999876542211
Q ss_pred ccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEccccccc-C----------------CCHHHHHHHHHHHHhc
Q 024797 133 HHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS-W----------------STEARARRALANVSAL 195 (262)
Q Consensus 133 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~----------------~~~~~~~~~l~~~~~~ 195 (262)
. .....+.++|....+... ....||+|+++--+... + .....-..++..+.+.
T Consensus 103 ~-------~~~~~i~~~d~l~~~~~~---~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~ 172 (311)
T PF02384_consen 103 D-------NSNINIIQGDSLENDKFI---KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSL 172 (311)
T ss_dssp H-------CBGCEEEES-TTTSHSCT---ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHT
T ss_pred c-------cccccccccccccccccc---cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhh
Confidence 1 112347788865544310 14689999987533211 0 0111223588999999
Q ss_pred cCCCcEEEEEeCCh
Q 024797 196 LRPGGTFIGTMPDA 209 (262)
Q Consensus 196 L~~gG~li~~~~~~ 209 (262)
|++||++++.+|+.
T Consensus 173 Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 173 LKPGGRAAIILPNG 186 (311)
T ss_dssp EEEEEEEEEEEEHH
T ss_pred cccccceeEEecch
Confidence 99999998888754
No 192
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.75 E-value=6.3e-08 Score=84.43 Aligned_cols=106 Identities=15% Similarity=0.157 Sum_probs=79.8
Q ss_pred CCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
+.+|||++||+|..+..++.. +...|+++|+++.+++.+++++...+ ..++.+.++|+..+.. ..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~---------~~~~~v~~~Da~~~l~-----~~ 123 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG---------LENEKVFNKDANALLH-----EE 123 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---------CCceEEEhhhHHHHHh-----hc
Confidence 468999999999999988753 44589999999999999999886322 1236788999866421 14
Q ss_pred CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (262)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~ 212 (262)
+.||+|++.-. .....++..+.+.+++||.++++..|...+
T Consensus 124 ~~fD~V~lDP~--------Gs~~~~l~~al~~~~~~gilyvSAtD~~~L 164 (382)
T PRK04338 124 RKFDVVDIDPF--------GSPAPFLDSAIRSVKRGGLLCVTATDTAPL 164 (382)
T ss_pred CCCCEEEECCC--------CCcHHHHHHHHHHhcCCCEEEEEecCchhh
Confidence 57999998641 113457777778889999999997766555
No 193
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=7.6e-07 Score=67.94 Aligned_cols=111 Identities=16% Similarity=0.214 Sum_probs=78.2
Q ss_pred cCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
.....+||||||+|-.+.++++. +...+.++|+++.+++...+.+.- ...++..++.|+..--
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~----------n~~~~~~V~tdl~~~l----- 106 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC----------NRVHIDVVRTDLLSGL----- 106 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh----------cCCccceeehhHHhhh-----
Confidence 34778999999999988888763 444688999999999998876652 1334678888876543
Q ss_pred CCCCCeeEEEEccccc---------------cc--CCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797 161 ADDAPFDICSCQFAMH---------------YS--WSTEARARRALANVSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~---------------~~--~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 209 (262)
..+++|+++.+-... +. .+..+-..+++..+-.+|.|.|.+++.....
T Consensus 107 -~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~ 171 (209)
T KOG3191|consen 107 -RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA 171 (209)
T ss_pred -ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh
Confidence 248889888654211 00 1123335677788888999999998776543
No 194
>PRK04148 hypothetical protein; Provisional
Probab=98.69 E-value=3.4e-07 Score=67.36 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=65.8
Q ss_pred cCCCeEEEecCCCCc-chHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~-~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
.++.+|||+|||.|. ++..+.+. ...|+++|+++..++.+++.. +.++++|+++..+.
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~~----------------~~~v~dDlf~p~~~---- 73 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKLG----------------LNAFVDDLFNPNLE---- 73 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHhC----------------CeEEECcCCCCCHH----
Confidence 356789999999996 55555543 348999999999999887753 67899999876541
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
--..+|+|++.. ++.+.+..+.++.+.+ |.-+++..
T Consensus 74 ~y~~a~liysir-------pp~el~~~~~~la~~~--~~~~~i~~ 109 (134)
T PRK04148 74 IYKNAKLIYSIR-------PPRDLQPFILELAKKI--NVPLIIKP 109 (134)
T ss_pred HHhcCCEEEEeC-------CCHHHHHHHHHHHHHc--CCCEEEEc
Confidence 135789998654 4455566666666554 34466543
No 195
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.69 E-value=8.4e-08 Score=78.60 Aligned_cols=122 Identities=20% Similarity=0.246 Sum_probs=78.8
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccc----------ccc---------ccCCCCCe
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH----------HQR---------RKKFSFPA 144 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----------~~~---------~~~~~~~v 144 (262)
++.++||||||+-.+-..-+......++..|.++..++..++.+...+.- ..+ ...+...|
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 56789999999954433223345667999999999999888777543110 000 00111224
Q ss_pred E-EEeCcccccccccc-cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 145 R-LICGDCYEVHLDKV-LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 145 ~-~~~~d~~~~~~~~~-~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
+ ++.+|+.+.+.... ..-+.+||+|++.++++.+..+.+....+++++.++|||||.|++.
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3 77788866442111 0012359999999999999999999999999999999999999875
No 196
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.68 E-value=6.5e-08 Score=81.03 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=67.5
Q ss_pred HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcC--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (262)
Q Consensus 73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d 150 (262)
++.++..+.+.++..+||++||.|.++..+++.. .++|+|+|.++.|++.|++++.+ ..++.++++|
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----------~~ri~~i~~~ 76 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----------FGRFTLVHGN 76 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----------CCcEEEEeCC
Confidence 3445666666788899999999999999998753 47899999999999999988752 3468999999
Q ss_pred ccccccccccCCC--CCeeEEEEcc
Q 024797 151 CYEVHLDKVLADD--APFDICSCQF 173 (262)
Q Consensus 151 ~~~~~~~~~~~~~--~~fD~V~~~~ 173 (262)
+.++... . +. .++|.|++..
T Consensus 77 f~~l~~~--l-~~~~~~vDgIl~DL 98 (296)
T PRK00050 77 FSNLKEV--L-AEGLGKVDGILLDL 98 (296)
T ss_pred HHHHHHH--H-HcCCCccCEEEECC
Confidence 8876421 1 11 2799999865
No 197
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.68 E-value=1.4e-07 Score=74.39 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=82.0
Q ss_pred chhHHHHHHHHHHHHhcc-CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCe
Q 024797 66 LKKLNNWIKSVLVQLYAR-RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA 144 (262)
Q Consensus 66 ~~~~~~~~~~~l~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v 144 (262)
-+.+.+|++......... ...++|||||=+......- ...-.|+.||+++. .-
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~--~~~fdvt~IDLns~------------------------~~ 85 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST--SGWFDVTRIDLNSQ------------------------HP 85 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCcccc--cCceeeEEeecCCC------------------------CC
Confidence 356667776665433221 2369999999765433321 22224999999761 13
Q ss_pred EEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcE-----EEEEeCCh
Q 024797 145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT-----FIGTMPDA 209 (262)
Q Consensus 145 ~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~-----li~~~~~~ 209 (262)
.+.++|+.+.|++.. +.++||+|+++.++.++ +++..+-+.+.++++.|+|+|. |++..|.+
T Consensus 86 ~I~qqDFm~rplp~~--~~e~FdvIs~SLVLNfV-P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 86 GILQQDFMERPLPKN--ESEKFDVISLSLVLNFV-PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred CceeeccccCCCCCC--cccceeEEEEEEEEeeC-CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 357888887766321 46799999999999987 6788899999999999999999 88888754
No 198
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.66 E-value=1.1e-07 Score=78.30 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=81.4
Q ss_pred ccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
.+.+.+||-||.|.|..+..+++.. ..+++.||+++.+++.|++.+...... ....+++++.+|+..+-..
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-----~~d~r~~i~~~Dg~~~l~~--- 145 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG-----LDDPRVRIIIGDGRKFLKE--- 145 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT-----GGSTTEEEEESTHHHHHHT---
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc-----cCCCceEEEEhhhHHHHHh---
Confidence 4568899999999999999887755 568999999999999999987631110 1246799999998765321
Q ss_pred CCCC-CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 161 ADDA-PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 161 ~~~~-~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
..+ +||+|++...-.......-.-..+++.+.+.|+|||.+++...
T Consensus 146 -~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 146 -TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp -SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 234 8999998653311100001136789999999999999998753
No 199
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.66 E-value=2e-06 Score=70.92 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=78.1
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccc-------------cc---------------
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH-------------HQ--------------- 135 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-------------~~--------------- 135 (262)
...+||-.|||.|+++..++..+. .+.|.|.|--|+-..+-.+...... |.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 356899999999999999987765 7999999999977665543310000 00
Q ss_pred ---cccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797 136 ---RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (262)
Q Consensus 136 ---~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li 203 (262)
.......+.....||+.+.-..+. ..+.||+|+..+.+. +.++....++.+.++|||||..|
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~--~~~~~d~VvT~FFID----TA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDE--NKGSFDVVVTCFFID----TAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcc--cCCcccEEEEEEEee----chHHHHHHHHHHHHHhccCCEEE
Confidence 001122345666677666543100 137999999886554 66899999999999999999654
No 200
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.66 E-value=6.4e-08 Score=76.03 Aligned_cols=105 Identities=26% Similarity=0.262 Sum_probs=65.1
Q ss_pred CCCeEEEecCCCCcchHHHHhcC--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc----
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD---- 157 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---- 157 (262)
++.+|||+||++|.++..++... ...|+|+|+.+. .. ...+.++++|+.+....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~--------~~------------~~~~~~i~~d~~~~~~~~~i~ 82 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM--------DP------------LQNVSFIQGDITNPENIKDIR 82 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST--------GS-------------TTEEBTTGGGEEEEHSHHGG
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc--------cc------------ccceeeeecccchhhHHHhhh
Confidence 45899999999999999988765 568999999885 00 12366677776543211
Q ss_pred cccC-CCCCeeEEEEccccccc----CC---CHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 158 KVLA-DDAPFDICSCQFAMHYS----WS---TEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 158 ~~~~-~~~~fD~V~~~~~l~~~----~~---~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
.... ....+|+|++..+.... .+ ........+.-+.+.|+|||.+++.+..
T Consensus 83 ~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 83 KLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp GSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred hhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 1110 12689999998832211 00 1133445566667889999999987743
No 201
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.65 E-value=3.5e-07 Score=71.61 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=75.1
Q ss_pred eEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCC
Q 024797 87 VVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165 (262)
Q Consensus 87 ~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 165 (262)
+++|+|+|.|--+..++- .+..+++.+|.+..-+...+....+++.. |++++++.+++ .. ...+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~---------nv~v~~~R~E~-~~-----~~~~ 115 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS---------NVEVINGRAEE-PE-----YRES 115 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S---------SEEEEES-HHH-TT-----TTT-
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC---------CEEEEEeeecc-cc-----cCCC
Confidence 899999999988887764 45668999999999888887776655443 49999999988 22 4689
Q ss_pred eeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 166 FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 166 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
||+|++..+-. ...++.-+...+++||.+++.-
T Consensus 116 fd~v~aRAv~~--------l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 116 FDVVTARAVAP--------LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp EEEEEEESSSS--------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred ccEEEeehhcC--------HHHHHHHHHHhcCCCCEEEEEc
Confidence 99999887653 4577888999999999987754
No 202
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.65 E-value=4.7e-07 Score=70.21 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=83.7
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
-.+.++||+-+|+|.++.+.+..+...++.||.+..++...+++.... +...++.++.+|+... +.... .
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l--------~~~~~~~~~~~da~~~-L~~~~-~ 111 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKAL--------GLEGEARVLRNDALRA-LKQLG-T 111 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh--------CCccceEEEeecHHHH-HHhcC-C
Confidence 468899999999999999998888889999999999999999998743 3346688899998733 11110 2
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHH--HHhccCCCcEEEEEeCCh
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALAN--VSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~--~~~~L~~gG~li~~~~~~ 209 (262)
.+.||+|++.--++. ..-+....+.. -..+|+|+|.+++.....
T Consensus 112 ~~~FDlVflDPPy~~---~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 112 REPFDLVFLDPPYAK---GLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCcccEEEeCCCCcc---chhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 235999998876652 11222233333 568899999999987654
No 203
>PRK00536 speE spermidine synthase; Provisional
Probab=98.64 E-value=4.6e-07 Score=74.67 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=76.8
Q ss_pred hccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
..+.+.+||=+|.|.|..+.++++++. +|+.||+++++++.+++.++.... .--..+++++.. +.+ .
T Consensus 69 ~h~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~-----~~~DpRv~l~~~-~~~--~---- 135 (262)
T PRK00536 69 TKKELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHE-----VKNNKNFTHAKQ-LLD--L---- 135 (262)
T ss_pred hCCCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHH-----hhcCCCEEEeeh-hhh--c----
Confidence 345678999999999999999998764 999999999999999997764221 011345665541 111 0
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
..++||+|++.... ...+.+.+++.|+|||.++.-..
T Consensus 136 -~~~~fDVIIvDs~~---------~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 136 -DIKKYDLIICLQEP---------DIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred -cCCcCCEEEEcCCC---------ChHHHHHHHHhcCCCcEEEECCC
Confidence 24789999987532 24677889999999999998543
No 204
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.63 E-value=2.2e-07 Score=73.96 Aligned_cols=126 Identities=21% Similarity=0.206 Sum_probs=70.4
Q ss_pred HHHHHHHHHhccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (262)
Q Consensus 72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d 150 (262)
.+..++..+...+++..+|+|||.|......+. .+..+.+||++.+...+.|.............-......+.+..+|
T Consensus 30 ~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 30 FVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 355566666778899999999999998776543 5676799999999988887754432110000000113457888999
Q ss_pred ccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (262)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~ 204 (262)
+.+.+..... -...|+|++++... + ++....|.+....||+|-++|-
T Consensus 110 fl~~~~~~~~--~s~AdvVf~Nn~~F----~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 110 FLDPDFVKDI--WSDADVVFVNNTCF----D-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp TTTHHHHHHH--GHC-SEEEE--TTT------HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccccHhHhhh--hcCCCEEEEecccc----C-HHHHHHHHHHHhcCCCCCEEEE
Confidence 8765432110 13469999988653 2 4556666788888988877654
No 205
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.62 E-value=4.3e-07 Score=78.99 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=73.8
Q ss_pred CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC---
Q 024797 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA--- 161 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--- 161 (262)
+.+|||++||+|.++..+++. ..+|+|+|+++.+++.|++++...+ ..+++++++|+.+.- .....
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~---------~~~v~~~~~d~~~~l-~~~~~~~~ 275 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANG---------IDNVQIIRMSAEEFT-QAMNGVRE 275 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhC---------CCcEEEEECCHHHHH-HHHhhccc
Confidence 357999999999999977654 4589999999999999999876322 236899999986642 11100
Q ss_pred ---------CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhh
Q 024797 162 ---------DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218 (262)
Q Consensus 162 ---------~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~ 218 (262)
...+||+|++.---.-+ ...+++.+.+ +++++++++ |+..+.+.+..
T Consensus 276 ~~~~~~~~~~~~~~D~v~lDPPR~G~------~~~~l~~l~~---~~~ivyvSC-~p~tlarDl~~ 331 (362)
T PRK05031 276 FNRLKGIDLKSYNFSTIFVDPPRAGL------DDETLKLVQA---YERILYISC-NPETLCENLET 331 (362)
T ss_pred ccccccccccCCCCCEEEECCCCCCC------cHHHHHHHHc---cCCEEEEEe-CHHHHHHHHHH
Confidence 01258999976532211 2344444443 677777665 44555554444
No 206
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.62 E-value=2e-07 Score=78.41 Aligned_cols=97 Identities=21% Similarity=0.216 Sum_probs=81.0
Q ss_pred CeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCC
Q 024797 86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165 (262)
Q Consensus 86 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 165 (262)
...+|+|.|.|+.+..++. ...++-|+++....+..++..+. ..|+.+-+|+.+- . |.
T Consensus 179 ~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-------------~gV~~v~gdmfq~-~-----P~-- 236 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-------------PGVEHVAGDMFQD-T-----PK-- 236 (342)
T ss_pred ceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-------------CCcceeccccccc-C-----CC--
Confidence 6899999999999999887 66679999999888888777662 1277788888664 3 33
Q ss_pred eeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 166 FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 166 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
-|+|++-+++||+ +.++..++|+++++.|+|||.+++..
T Consensus 237 ~daI~mkWiLhdw--tDedcvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 237 GDAIWMKWILHDW--TDEDCVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred cCeEEEEeecccC--ChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 3699999999999 88999999999999999999988753
No 207
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.62 E-value=8.7e-07 Score=83.49 Aligned_cols=118 Identities=15% Similarity=0.114 Sum_probs=82.1
Q ss_pred cCCCeEEEecCCCCcchHHHHhc-------------------------------------------CCCeEEEEeCChhH
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA-------------------------------------------KIGYYVGIDIAEGS 119 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~-------------------------------------------~~~~v~gvD~s~~~ 119 (262)
.++..++|.+||+|.++++.+.. ....++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 35789999999999998876431 01258999999999
Q ss_pred HHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhcc---
Q 024797 120 IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL--- 196 (262)
Q Consensus 120 ~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L--- 196 (262)
++.|++++... ++...+.+.++|+.+++... ..++||+|+++--...-.....+...+...+.+.+
T Consensus 269 v~~A~~N~~~~--------g~~~~i~~~~~D~~~~~~~~---~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 269 IQAARKNARRA--------GVAELITFEVKDVADLKNPL---PKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred HHHHHHHHHHc--------CCCcceEEEeCChhhccccc---ccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 99999998743 33456899999998875410 23579999998654332223344444544444444
Q ss_pred CCCcEEEEEeCChHH
Q 024797 197 RPGGTFIGTMPDANV 211 (262)
Q Consensus 197 ~~gG~li~~~~~~~~ 211 (262)
.+|+.+++.+++...
T Consensus 338 ~~g~~~~llt~~~~l 352 (702)
T PRK11783 338 FGGWNAALFSSSPEL 352 (702)
T ss_pred CCCCeEEEEeCCHHH
Confidence 489999888887653
No 208
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.61 E-value=4.3e-07 Score=78.69 Aligned_cols=114 Identities=11% Similarity=0.032 Sum_probs=72.9
Q ss_pred CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc---C
Q 024797 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL---A 161 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~ 161 (262)
+.+|||++||+|.++..+++. ...|+|+|+++++++.|++++...+ ..++.++++|+.++...... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~---------~~~v~~~~~d~~~~~~~~~~~~~~ 267 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANN---------IDNVQIIRMSAEEFTQAMNGVREF 267 (353)
T ss_pred CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcC---------CCcEEEEEcCHHHHHHHHhhcccc
Confidence 347999999999999977654 3589999999999999999886322 23589999998764210000 0
Q ss_pred ---C-----CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhh
Q 024797 162 ---D-----DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218 (262)
Q Consensus 162 ---~-----~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~ 218 (262)
. ...||+|++.---.-+ ...++..+. +|++++++++ |+..+.+.+..
T Consensus 268 ~~~~~~~~~~~~~d~v~lDPPR~G~------~~~~l~~l~---~~~~ivYvsC-~p~tlaRDl~~ 322 (353)
T TIGR02143 268 RRLKGIDLKSYNCSTIFVDPPRAGL------DPDTCKLVQ---AYERILYISC-NPETLKANLEQ 322 (353)
T ss_pred ccccccccccCCCCEEEECCCCCCC------cHHHHHHHH---cCCcEEEEEc-CHHHHHHHHHH
Confidence 0 1237999875532111 233444443 3677777664 44555554443
No 209
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.60 E-value=2.7e-07 Score=80.09 Aligned_cols=107 Identities=11% Similarity=0.080 Sum_probs=82.4
Q ss_pred CCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 85 GDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
+.+|||+.||+|..++.++.. +...|+++|+++++++.+++++...+ ..+++++++|+..+... .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~---------~~~~~v~~~Da~~~l~~----~ 111 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS---------VENIEVPNEDAANVLRY----R 111 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC---------CCcEEEEchhHHHHHHH----h
Confidence 358999999999999998875 45689999999999999999886321 12478999998766321 2
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~ 212 (262)
..+||+|.+.- +. .+..++..+.+.+++||.+.++..|...+
T Consensus 112 ~~~fDvIdlDP-fG-------s~~~fld~al~~~~~~glL~vTaTD~~~L 153 (374)
T TIGR00308 112 NRKFHVIDIDP-FG-------TPAPFVDSAIQASAERGLLLVTATDTSAL 153 (374)
T ss_pred CCCCCEEEeCC-CC-------CcHHHHHHHHHhcccCCEEEEEecccHHh
Confidence 35799998765 32 23468889999999999999996655443
No 210
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.59 E-value=5.8e-08 Score=85.18 Aligned_cols=117 Identities=19% Similarity=0.240 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHhc--cCC--CeEEEecCCCCcchHHHHhcCCCeEEEE---eCChhHHHHHHHHhccCccccccccCC
Q 024797 68 KLNNWIKSVLVQLYA--RRG--DVVLDLACGKGGDLIKWDKAKIGYYVGI---DIAEGSIEDCRTRYNGDADHHQRRKKF 140 (262)
Q Consensus 68 ~~~~~~~~~l~~~~~--~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~~~~ 140 (262)
....+++.+...+.. ..+ .++||+|||.|.++..++.... ....+ |..+.+++.|-++.-
T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleRGv------------ 163 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALERGV------------ 163 (506)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhcCc------------
Confidence 444555544443332 222 3799999999999999876443 22222 444556666655421
Q ss_pred CCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 141 SFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 141 ~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
+ ..+-..--..+|+ +++.||+|-|..++.... .+-..+|-++.|+|+|||+++.+.|
T Consensus 164 p--a~~~~~~s~rLPf-----p~~~fDmvHcsrc~i~W~---~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 164 P--AMIGVLGSQRLPF-----PSNAFDMVHCSRCLIPWH---PNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred c--hhhhhhccccccC-----Cccchhhhhcccccccch---hcccceeehhhhhhccCceEEecCC
Confidence 1 1111222356777 899999999998776541 1224688999999999999999876
No 211
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.57 E-value=2e-06 Score=73.72 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=95.2
Q ss_pred chhHHHHHHHHHHHHh-ccCCCeEEEecCCCCcchHHHHhcCC---------------------------------C---
Q 024797 66 LKKLNNWIKSVLVQLY-ARRGDVVLDLACGKGGDLIKWDKAKI---------------------------------G--- 108 (262)
Q Consensus 66 ~~~~~~~~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~---------------------------------~--- 108 (262)
...+.+-+...+..+. -.++..++|.-||+|.+.++.+.-.. .
T Consensus 172 ~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~ 251 (381)
T COG0116 172 PAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRG 251 (381)
T ss_pred CCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhc
Confidence 3444444544444433 34567999999999999887654211 1
Q ss_pred ----eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCH--
Q 024797 109 ----YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE-- 182 (262)
Q Consensus 109 ----~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~-- 182 (262)
.++|+|+++.+++.|+.++... +....|+|.++|+..++. +.+.+|+||++--.---+.+.
T Consensus 252 ~~~~~~~G~Did~r~i~~Ak~NA~~A--------Gv~d~I~f~~~d~~~l~~-----~~~~~gvvI~NPPYGeRlg~~~~ 318 (381)
T COG0116 252 KELPIIYGSDIDPRHIEGAKANARAA--------GVGDLIEFKQADATDLKE-----PLEEYGVVISNPPYGERLGSEAL 318 (381)
T ss_pred CccceEEEecCCHHHHHHHHHHHHhc--------CCCceEEEEEcchhhCCC-----CCCcCCEEEeCCCcchhcCChhh
Confidence 3779999999999999998743 456679999999998874 227899999986322111122
Q ss_pred -H-HHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhhh
Q 024797 183 -A-RARRALANVSALLRPGGTFIGTMPDANVIIKKLREV 219 (262)
Q Consensus 183 -~-~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~ 219 (262)
. ....+.+.+++.++..+.+++++...-.....++..
T Consensus 319 v~~LY~~fg~~lk~~~~~ws~~v~tt~e~~~~~~~~ra~ 357 (381)
T COG0116 319 VAKLYREFGRTLKRLLAGWSRYVFTTSEDLLFCLGLRAD 357 (381)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEccHHHHHHHhhhhc
Confidence 2 345666677788888888888876654444444443
No 212
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.55 E-value=8e-07 Score=72.06 Aligned_cols=85 Identities=24% Similarity=0.349 Sum_probs=67.7
Q ss_pred HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (262)
Q Consensus 73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 152 (262)
+..++......+++.|||+|-|||.++..+++.+ .+|+++++++.|+....++.... ......+++.+|+.
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~-kkVvA~E~Dprmvael~krv~gt--------p~~~kLqV~~gD~l 117 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG-KKVVAVEIDPRMVAELEKRVQGT--------PKSGKLQVLHGDFL 117 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc-CeEEEEecCcHHHHHHHHHhcCC--------CccceeeEEecccc
Confidence 4445555667899999999999999999998654 48999999999999999988732 22356889999988
Q ss_pred ccccccccCCCCCeeEEEEcc
Q 024797 153 EVHLDKVLADDAPFDICSCQF 173 (262)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~ 173 (262)
..++ ..||+++.+.
T Consensus 118 K~d~-------P~fd~cVsNl 131 (315)
T KOG0820|consen 118 KTDL-------PRFDGCVSNL 131 (315)
T ss_pred cCCC-------cccceeeccC
Confidence 7654 5789999854
No 213
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.52 E-value=1.2e-06 Score=74.54 Aligned_cols=103 Identities=24% Similarity=0.188 Sum_probs=83.3
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
.+|.+|||+-||-|.++..++..+...|+++|+++.+++..++++.- ++....+..+++|+..... .
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~L--------N~v~~~v~~i~gD~rev~~-----~ 253 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRL--------NKVEGRVEPILGDAREVAP-----E 253 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHh--------cCccceeeEEeccHHHhhh-----c
Confidence 46999999999999999999887666699999999999999999873 3445558899999988864 2
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
-+.+|-|++...- ....++..+.+.+++||.+.+..
T Consensus 254 ~~~aDrIim~~p~--------~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 254 LGVADRIIMGLPK--------SAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred cccCCEEEeCCCC--------cchhhHHHHHHHhhcCcEEEEEe
Confidence 3789999876532 23567788888888999987654
No 214
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.50 E-value=1.4e-06 Score=79.59 Aligned_cols=117 Identities=14% Similarity=0.054 Sum_probs=72.3
Q ss_pred CCCeEEEecCCCCcchHHHHhcC---------CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAK---------IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (262)
...+|||.|||+|.++..++... ...++|+|+++.++..++.++...+ ...+.+.+.|....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~---------~~~~~i~~~d~l~~ 101 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA---------LLEINVINFNSLSY 101 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC---------CCCceeeecccccc
Confidence 34689999999999998876521 1358999999999999998876321 11233444443321
Q ss_pred ccccccCCCCCeeEEEEcccccccCCCH------------------------------------------HHHHHHH-HH
Q 024797 155 HLDKVLADDAPFDICSCQFAMHYSWSTE------------------------------------------ARARRAL-AN 191 (262)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~------------------------------------------~~~~~~l-~~ 191 (262)
.........+.||+|+++--..-.-... .....++ ..
T Consensus 102 ~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~ 181 (524)
T TIGR02987 102 VLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEI 181 (524)
T ss_pred cccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHH
Confidence 1100000235799999875333110000 0111233 56
Q ss_pred HHhccCCCcEEEEEeCCh
Q 024797 192 VSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 192 ~~~~L~~gG~li~~~~~~ 209 (262)
+.+.|++||++.+.+|+.
T Consensus 182 ~~~lL~~~G~~~~I~P~s 199 (524)
T TIGR02987 182 SLEIANKNGYVSIISPAS 199 (524)
T ss_pred HHHhcCCCCEEEEEEChH
Confidence 889999999999888864
No 215
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=8.2e-07 Score=78.47 Aligned_cols=123 Identities=20% Similarity=0.227 Sum_probs=84.1
Q ss_pred HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (262)
Q Consensus 76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 155 (262)
.+..+...+++++||+-||.|.+++.++ ....+|+|+|+++++++.|++++...+ ..|+.|..++++.+.
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~---------i~N~~f~~~~ae~~~ 354 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANG---------IDNVEFIAGDAEEFT 354 (432)
T ss_pred HHHHHhhcCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcC---------CCcEEEEeCCHHHHh
Confidence 3334444577899999999999999996 355689999999999999999987433 345999999998876
Q ss_pred cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhh
Q 024797 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218 (262)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~ 218 (262)
.... ....+|+|+..---.-+ -..+++.+ ..++|..+++++ .|+..+.+.+..
T Consensus 355 ~~~~--~~~~~d~VvvDPPR~G~------~~~~lk~l-~~~~p~~IvYVS-CNP~TlaRDl~~ 407 (432)
T COG2265 355 PAWW--EGYKPDVVVVDPPRAGA------DREVLKQL-AKLKPKRIVYVS-CNPATLARDLAI 407 (432)
T ss_pred hhcc--ccCCCCEEEECCCCCCC------CHHHHHHH-HhcCCCcEEEEe-CCHHHHHHHHHH
Confidence 4211 23578999976532211 12344444 445777777776 455555544433
No 216
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.48 E-value=3.4e-07 Score=72.57 Aligned_cols=116 Identities=22% Similarity=0.294 Sum_probs=84.6
Q ss_pred ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
++.+.+|||.+.|-|..++..++.+...|+-++.+++.++.|+-+-=. .......++++.+|+.+.-- + +
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwS-------r~l~~~~i~iilGD~~e~V~-~--~ 201 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWS-------RELFEIAIKIILGDAYEVVK-D--F 201 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCC-------ccccccccEEecccHHHHHh-c--C
Confidence 457899999999999999888877777899999999999988753110 01112358999999865421 1 2
Q ss_pred CCCCeeEEEEccc-ccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797 162 DDAPFDICSCQFA-MHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 162 ~~~~fD~V~~~~~-l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 209 (262)
++.+||+|+..-- +.+. ..-.-.++.++++|+|+|||.++=.+.++
T Consensus 202 ~D~sfDaIiHDPPRfS~A--geLYseefY~El~RiLkrgGrlFHYvG~P 248 (287)
T COG2521 202 DDESFDAIIHDPPRFSLA--GELYSEEFYRELYRILKRGGRLFHYVGNP 248 (287)
T ss_pred CccccceEeeCCCccchh--hhHhHHHHHHHHHHHcCcCCcEEEEeCCC
Confidence 6889999996542 1111 23345789999999999999998766554
No 217
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=9.9e-07 Score=72.19 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=70.1
Q ss_pred HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (262)
Q Consensus 72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 151 (262)
.++.++......+++.|||||+|.|.++..+++... +|+++++++.++...++.... ..+++++.+|+
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~-----------~~n~~vi~~Da 85 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP-----------YDNLTVINGDA 85 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc-----------ccceEEEeCch
Confidence 366677777777889999999999999999987554 799999999999999988641 45799999999
Q ss_pred cccccccccCCCCCeeEEEEcccc
Q 024797 152 YEVHLDKVLADDAPFDICSCQFAM 175 (262)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l 175 (262)
...++.... .++.|+++--.
T Consensus 86 Lk~d~~~l~----~~~~vVaNlPY 105 (259)
T COG0030 86 LKFDFPSLA----QPYKVVANLPY 105 (259)
T ss_pred hcCcchhhc----CCCEEEEcCCC
Confidence 988872111 57888876544
No 218
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.47 E-value=3e-07 Score=79.21 Aligned_cols=107 Identities=21% Similarity=0.226 Sum_probs=88.7
Q ss_pred ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
..++..++|+|||-|.....+.......++|+|.++..+..+........+++ ...++.+|+...++
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~--------k~~~~~~~~~~~~f----- 174 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDN--------KCNFVVADFGKMPF----- 174 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhh--------hcceehhhhhcCCC-----
Confidence 34677899999999998888766666689999999999998887765433332 34457888888877
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
+++.||.+.+.-+.+|. .+...++.++.++++|||+++..
T Consensus 175 edn~fd~v~~ld~~~~~----~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 175 EDNTFDGVRFLEVVCHA----PDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred CccccCcEEEEeecccC----CcHHHHHHHHhcccCCCceEEeH
Confidence 79999999999999998 77899999999999999999874
No 219
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=1.8e-06 Score=68.01 Aligned_cols=116 Identities=26% Similarity=0.285 Sum_probs=79.9
Q ss_pred ccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (262)
..++..|+|+||.+|..+..+++. ..+.|+|+|+.+ . ....+|.++++|++.-+....
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p---------~-----------~~~~~V~~iq~d~~~~~~~~~ 102 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP---------M-----------KPIPGVIFLQGDITDEDTLEK 102 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc---------c-----------ccCCCceEEeeeccCccHHHH
Confidence 357899999999999999988763 334599999977 1 113459999999976543211
Q ss_pred ---cCCCCCeeEEEEcccc--------cccCCCHHHHHHHHHHHHhccCCCcEEEEEeC---ChHHHHHHHhh
Q 024797 160 ---LADDAPFDICSCQFAM--------HYSWSTEARARRALANVSALLRPGGTFIGTMP---DANVIIKKLRE 218 (262)
Q Consensus 160 ---~~~~~~fD~V~~~~~l--------~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~---~~~~~~~~~~~ 218 (262)
.....++|+|++.++- .|. ........++.-+..+|+|||.+++.+. +.+.++..++.
T Consensus 103 l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~-r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~ 174 (205)
T COG0293 103 LLEALGGAPVDVVLSDMAPNTSGNRSVDHA-RSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR 174 (205)
T ss_pred HHHHcCCCCcceEEecCCCCcCCCccccHH-HHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH
Confidence 1134568999987643 332 1223346677778889999999998764 55566666554
No 220
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.44 E-value=1.1e-06 Score=69.08 Aligned_cols=131 Identities=21% Similarity=0.297 Sum_probs=88.0
Q ss_pred ccchhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEE
Q 024797 33 DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVG 112 (262)
Q Consensus 33 ~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g 112 (262)
+..-+..|......|.........++...-+.+...+...+...+.... ....|+|..||.|..+..++.... .|++
T Consensus 45 ~p~l~kywk~ryrlfsrfd~gi~md~e~wfsvTpe~ia~~iA~~v~~~~--~~~~iidaf~g~gGntiqfa~~~~-~Vis 121 (263)
T KOG2730|consen 45 NPELFKYWKNRYRLFSRFDSGIYMDREGWFSVTPEKIAEHIANRVVACM--NAEVIVDAFCGVGGNTIQFALQGP-YVIA 121 (263)
T ss_pred ChHHHHHHHHHHHHHHhhccceeecccceEEeccHHHHHHHHHHHHHhc--CcchhhhhhhcCCchHHHHHHhCC-eEEE
Confidence 3455567776666666544444455555555556666666655554443 456899999999888877764443 7999
Q ss_pred EeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccc
Q 024797 113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAM 175 (262)
Q Consensus 113 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l 175 (262)
||+++.-+..|+.+++-.| .+.+|+|+|||+.++- ..+.+....+|+|+.+...
T Consensus 122 IdiDPikIa~AkhNaeiYG--------I~~rItFI~GD~ld~~-~~lq~~K~~~~~vf~sppw 175 (263)
T KOG2730|consen 122 IDIDPVKIACARHNAEVYG--------VPDRITFICGDFLDLA-SKLKADKIKYDCVFLSPPW 175 (263)
T ss_pred EeccHHHHHHHhccceeec--------CCceeEEEechHHHHH-HHHhhhhheeeeeecCCCC
Confidence 9999999999999887544 4568999999987652 1111133457788765533
No 221
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=6.1e-06 Score=71.52 Aligned_cols=118 Identities=18% Similarity=0.232 Sum_probs=84.1
Q ss_pred HhccCCCeEEEecCCCCcchHHHHhcC---CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc
Q 024797 80 LYARRGDVVLDLACGKGGDLIKWDKAK---IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (262)
Q Consensus 80 ~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 156 (262)
+.+.++.+|||+++++|.=+..++... ...|+++|.++.-+...++++...+..| +...+.|...++-
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n---------v~~~~~d~~~~~~ 222 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN---------VIVVNKDARRLAE 222 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc---------eEEEecccccccc
Confidence 456789999999999999888887632 2357999999999999999988665443 7788888765432
Q ss_pred ccccCCCCCeeEEEEcc------ccccc------CC------CHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 157 DKVLADDAPFDICSCQF------AMHYS------WS------TEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 157 ~~~~~~~~~fD~V~~~~------~l~~~------~~------~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
.. ...++||.|++.. ++.-- +. -...+.++|..+.+.|||||.|+-++.+
T Consensus 223 ~~--~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 223 LL--PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred cc--cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 10 0223699999753 22100 00 1123578899999999999999988753
No 222
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.43 E-value=3e-06 Score=67.22 Aligned_cols=105 Identities=20% Similarity=0.218 Sum_probs=71.9
Q ss_pred HHhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhH----HHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797 79 QLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGS----IEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (262)
Q Consensus 79 ~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~----~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 152 (262)
.+...++.+||-+|+++|.....+.. ...+.|++|++|+.. +..|+++ .|+-.+..|+.
T Consensus 68 ~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---------------~NIiPIl~DAr 132 (229)
T PF01269_consen 68 NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---------------PNIIPILEDAR 132 (229)
T ss_dssp --S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---------------TTEEEEES-TT
T ss_pred ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---------------CceeeeeccCC
Confidence 34567899999999999988888765 457799999999965 4444443 35888999987
Q ss_pred ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
....-.. --+.+|+|++.-+.. +..+-++.++...||+||.+++.+
T Consensus 133 ~P~~Y~~--lv~~VDvI~~DVaQp------~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 133 HPEKYRM--LVEMVDVIFQDVAQP------DQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp SGGGGTT--TS--EEEEEEE-SST------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChHHhhc--ccccccEEEecCCCh------HHHHHHHHHHHhhccCCcEEEEEE
Confidence 5332111 135899999876542 456677888889999999999875
No 223
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=3.2e-06 Score=68.63 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=88.7
Q ss_pred HHHHHHHhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (262)
Q Consensus 74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 151 (262)
..++..+...||.+|||-|.|+|.++..+++ .+.++++-+|+-..-.+.|.+.+.+ +..+.++++..-|+
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~--------hgi~~~vt~~hrDV 166 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFRE--------HGIGDNVTVTHRDV 166 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHH--------hCCCcceEEEEeec
Confidence 3455666788999999999999999999887 4678999999999888889888875 34678899999998
Q ss_pred cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcE-EEEEeCChHH
Q 024797 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT-FIGTMPDANV 211 (262)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~-li~~~~~~~~ 211 (262)
...-+.. .+..+|.|++.. +.+..++..+..+||.+|. ++.-.|-.+.
T Consensus 167 c~~GF~~---ks~~aDaVFLDl---------PaPw~AiPha~~~lk~~g~r~csFSPCIEQ 215 (314)
T KOG2915|consen 167 CGSGFLI---KSLKADAVFLDL---------PAPWEAIPHAAKILKDEGGRLCSFSPCIEQ 215 (314)
T ss_pred ccCCccc---cccccceEEEcC---------CChhhhhhhhHHHhhhcCceEEeccHHHHH
Confidence 7655421 367899998755 3344566777788988774 4443444443
No 224
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.38 E-value=3.9e-06 Score=66.94 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=75.6
Q ss_pred CCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 85 GDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
+.+++|||+|.|--+..++- .+..+|+.+|....-+...+....+++.. |++++++.++++.. .
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~---------nv~i~~~RaE~~~~------~ 132 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE---------NVEIVHGRAEEFGQ------E 132 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC---------CeEEehhhHhhccc------c
Confidence 58999999999988887763 45556999999998888887777665544 39999999988763 3
Q ss_pred CC-eeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797 164 AP-FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (262)
Q Consensus 164 ~~-fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~ 204 (262)
.. ||+|++..+-. ...++.-+...+++||.+++
T Consensus 133 ~~~~D~vtsRAva~--------L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 133 KKQYDVVTSRAVAS--------LNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred cccCcEEEeehccc--------hHHHHHHHHHhcccCCcchh
Confidence 34 99999877543 45677778999999988754
No 225
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.34 E-value=7.9e-06 Score=68.37 Aligned_cols=108 Identities=18% Similarity=0.175 Sum_probs=69.0
Q ss_pred cCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 83 RRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
..+.+|||+|||+|.-+-.+.. .....++++|.|+.|++.++........ ...... .........
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--------~~~~~~-~~~~~~~~~---- 98 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--------NRNAEW-RRVLYRDFL---- 98 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--------cccchh-hhhhhcccc----
Confidence 3567999999999964433322 2345799999999999999887653110 000101 111110000
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
+....|+|++.++|..+.+ ..+..+++.+.+.+.+ .||+.-|.
T Consensus 99 -~~~~~DLvi~s~~L~EL~~--~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 99 -PFPPDDLVIASYVLNELPS--AARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred -cCCCCcEEEEehhhhcCCc--hHHHHHHHHHHHhccC--cEEEEcCC
Confidence 1223499999999998833 7788899999888876 76666553
No 226
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.33 E-value=1.4e-05 Score=69.41 Aligned_cols=122 Identities=20% Similarity=0.223 Sum_probs=69.8
Q ss_pred HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (262)
Q Consensus 76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 155 (262)
++..+...++ +|||+-||.|.+++.++. ...+|+|||+++.+++.|++++...+ ..+++|+++++.++.
T Consensus 189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~-~~~~V~gvE~~~~av~~A~~Na~~N~---------i~n~~f~~~~~~~~~ 257 (352)
T PF05958_consen 189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAK-KAKKVIGVEIVEEAVEDARENAKLNG---------IDNVEFIRGDAEDFA 257 (352)
T ss_dssp HHHHCTT-TT-EEEEES-TTTCCHHHHHC-CSSEEEEEES-HHHHHHHHHHHHHTT-----------SEEEEE--SHHCC
T ss_pred HHHHhhcCCC-cEEEEeecCCHHHHHHHh-hCCeEEEeeCCHHHHHHHHHHHHHcC---------CCcceEEEeeccchh
Confidence 3333433344 899999999999999864 55689999999999999999987433 346999988875532
Q ss_pred cc-----------cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhh
Q 024797 156 LD-----------KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218 (262)
Q Consensus 156 ~~-----------~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~ 218 (262)
.. ........+|+|+..-.-.-+ . ..++..+.+ +. .++-...|+..+.+.+..
T Consensus 258 ~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~--~----~~~~~~~~~---~~-~ivYvSCnP~tlaRDl~~ 321 (352)
T PF05958_consen 258 KALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL--D----EKVIELIKK---LK-RIVYVSCNPATLARDLKI 321 (352)
T ss_dssp CHHCCS-GGTTGGGS-GGCTTESEEEE---TT-S--C----HHHHHHHHH---SS-EEEEEES-HHHHHHHHHH
T ss_pred HHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc--h----HHHHHHHhc---CC-eEEEEECCHHHHHHHHHH
Confidence 10 000023468999875422211 1 223333332 23 555555777777666554
No 227
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.33 E-value=9e-06 Score=61.46 Aligned_cols=101 Identities=25% Similarity=0.465 Sum_probs=69.4
Q ss_pred EEEecCCCCcchHHHHhc-CC-CeEEEEeCChhHHHHHHHHhccCccccccccCCCCC-eEEEeCcccc--cccccccCC
Q 024797 88 VLDLACGKGGDLIKWDKA-KI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP-ARLICGDCYE--VHLDKVLAD 162 (262)
Q Consensus 88 vLDiGcG~G~~~~~l~~~-~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-v~~~~~d~~~--~~~~~~~~~ 162 (262)
++|+|||+|... .+... .. ..++|+|+++.++..++..... .... +.+..+|... .++ .
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-----~ 115 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG----------AGLGLVDFVVADALGGVLPF-----E 115 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh----------cCCCceEEEEeccccCCCCC-----C
Confidence 999999999865 22222 22 3789999999999995554321 0111 5677777765 454 3
Q ss_pred C-CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797 163 D-APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 163 ~-~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 209 (262)
. ..||++......++. . ....+.++.+.|+|+|.+++.....
T Consensus 116 ~~~~~d~~~~~~~~~~~--~---~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 116 DSASFDLVISLLVLHLL--P---PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred CCCceeEEeeeeehhcC--C---HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 4 489999444444443 2 7889999999999999998887643
No 228
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.31 E-value=1.2e-06 Score=66.83 Aligned_cols=76 Identities=25% Similarity=0.437 Sum_probs=52.9
Q ss_pred CeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCC
Q 024797 86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165 (262)
Q Consensus 86 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 165 (262)
..|+|+.||.|..+..+++. ..+|+++|+++..++.|+.++...+. ..++.++++|+.++... .. ....
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv--------~~~I~~i~gD~~~~~~~-~~-~~~~ 69 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGV--------ADNIDFICGDFFELLKR-LK-SNKI 69 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT---------GGGEEEEES-HHHHGGG-B------
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCC--------CCcEEEEeCCHHHHHhh-cc-cccc
Confidence 36999999999999999765 55899999999999999999875443 45799999999775321 10 1112
Q ss_pred eeEEEEc
Q 024797 166 FDICSCQ 172 (262)
Q Consensus 166 fD~V~~~ 172 (262)
+|+|+++
T Consensus 70 ~D~vFlS 76 (163)
T PF09445_consen 70 FDVVFLS 76 (163)
T ss_dssp -SEEEE-
T ss_pred ccEEEEC
Confidence 8999975
No 229
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.29 E-value=1.7e-05 Score=63.03 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=80.8
Q ss_pred cCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 83 RRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
-.++++||+|.=+|.-+..++. ...++|+++|++++..+.+.+..... +....++++++++.+.- .++.
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a--------gv~~KI~~i~g~a~esL-d~l~ 142 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA--------GVDHKITFIEGPALESL-DELL 142 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc--------cccceeeeeecchhhhH-HHHH
Confidence 3678999999999877666654 46779999999999999998776643 34557999999875421 1111
Q ss_pred --CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 161 --ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 161 --~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
.+.++||.++... ..........++.+.+|+||+|++..
T Consensus 143 ~~~~~~tfDfaFvDa-------dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 143 ADGESGTFDFAFVDA-------DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred hcCCCCceeEEEEcc-------chHHHHHHHHHHHhhcccccEEEEec
Confidence 1468999998654 22445588999999999999999853
No 230
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.27 E-value=1.7e-05 Score=59.64 Aligned_cols=118 Identities=24% Similarity=0.218 Sum_probs=72.3
Q ss_pred HHHHHHHHHHH-HhccCCCeEEEecCCCCcchHHHHh-----cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCC
Q 024797 69 LNNWIKSVLVQ-LYARRGDVVLDLACGKGGDLIKWDK-----AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF 142 (262)
Q Consensus 69 ~~~~~~~~l~~-~~~~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 142 (262)
+...+..+... ....+..+|+|+|||.|.++..++. ...-.|+|+|.++..++.+.++...... ....
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~ 82 (141)
T PF13679_consen 9 MAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGS------DLEK 82 (141)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcc------hhhc
Confidence 33334444333 2235678999999999999988876 5556899999999999999888764321 1123
Q ss_pred CeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 143 ~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
+..+..++..... .....++++...+.-- --..+++.+.+ ++-.+++.+|
T Consensus 83 ~~~~~~~~~~~~~------~~~~~~~~vgLHaCG~------Ls~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 83 RLSFIQGDIADES------SSDPPDILVGLHACGD------LSDRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred cchhhccchhhhc------ccCCCeEEEEeecccc------hHHHHHHHHHH---cCCCEEEEcC
Confidence 4556666554432 2455677775544431 23344555544 5555555444
No 231
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.25 E-value=7.5e-06 Score=71.88 Aligned_cols=107 Identities=22% Similarity=0.300 Sum_probs=86.9
Q ss_pred cCCC-eEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 83 RRGD-VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~-~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
.+.. ++|-+|||.-.+...+.+.+...++-+|+|+..++.+..+.. .......+...|+..+.+
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~----------~~~~~~~~~~~d~~~l~f----- 110 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA----------KERPEMQMVEMDMDQLVF----- 110 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc----------cCCcceEEEEecchhccC-----
Confidence 3445 999999999988888877788889999999999988877653 114457889999998887
Q ss_pred CCCCeeEEEEcccccccCCCHHH------HHHHHHHHHhccCCCcEEEE
Q 024797 162 DDAPFDICSCQFAMHYSWSTEAR------ARRALANVSALLRPGGTFIG 204 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~------~~~~l~~~~~~L~~gG~li~ 204 (262)
++++||+|+.-+.+++++.+... ....+.+++++|++||+++.
T Consensus 111 edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 111 EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 89999999999999887654433 34678999999999999654
No 232
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.22 E-value=2.8e-05 Score=64.76 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (262)
Q Consensus 71 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d 150 (262)
..++.++..+...++..|||+|+|.|.++..++... .+++++|+++.+++..++++.. ..+++++.+|
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~-----------~~~~~vi~~D 84 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS-----------NPNVEVINGD 84 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT-----------CSSEEEEES-
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh-----------cccceeeecc
Confidence 345566666666789999999999999999998766 6899999999999999987652 4579999999
Q ss_pred ccccccccccCCCCCeeEEEEcccc
Q 024797 151 CYEVHLDKVLADDAPFDICSCQFAM 175 (262)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l 175 (262)
+..+...... .+....|+++...
T Consensus 85 ~l~~~~~~~~--~~~~~~vv~NlPy 107 (262)
T PF00398_consen 85 FLKWDLYDLL--KNQPLLVVGNLPY 107 (262)
T ss_dssp TTTSCGGGHC--SSSEEEEEEEETG
T ss_pred hhccccHHhh--cCCceEEEEEecc
Confidence 9988763211 2345666665444
No 233
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.15 E-value=1.7e-05 Score=66.70 Aligned_cols=116 Identities=22% Similarity=0.313 Sum_probs=83.7
Q ss_pred HhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (262)
Q Consensus 80 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (262)
+.+.++..|||+++|+|.-+..++.. ..+.+++.|+++.-+...+.++...+. .++.....|.......
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~---------~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV---------FNVIVINADARKLDPK 151 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----------SSEEEEESHHHHHHHH
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC---------ceEEEEeecccccccc
Confidence 45678899999999999988887763 457899999999999999988875543 3477777887665211
Q ss_pred cccCCCCCeeEEEEcc------cccccCC------------CHHHHHHHHHHHHhcc----CCCcEEEEEeC
Q 024797 158 KVLADDAPFDICSCQF------AMHYSWS------------TEARARRALANVSALL----RPGGTFIGTMP 207 (262)
Q Consensus 158 ~~~~~~~~fD~V~~~~------~l~~~~~------------~~~~~~~~l~~~~~~L----~~gG~li~~~~ 207 (262)
. ....||.|++.. ++..-.+ -...+.++|+.+.+.+ +|||+++-++.
T Consensus 152 ~---~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 152 K---PESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp H---HTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred c---cccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 0 234699999743 1111100 0123577899999999 99999998875
No 234
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.12 E-value=4.9e-07 Score=70.36 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=69.6
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
.+.++||+|+|.|..+..++ .....|+++++|..|..+.+++-- +| ....+... .+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk~y--------------nV----l~~~ew~~-----t~ 167 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKKNY--------------NV----LTEIEWLQ-----TD 167 (288)
T ss_pred CCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhcCC--------------ce----eeehhhhh-----cC
Confidence 34689999999999888773 345579999999999988876421 11 11112111 34
Q ss_pred CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCC-CcEEEEE
Q 024797 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRP-GGTFIGT 205 (262)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~-gG~li~~ 205 (262)
-++|+|.|.+.+... .++-++++.++.+|+| +|.+|+.
T Consensus 168 ~k~dli~clNlLDRc----~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 168 VKLDLILCLNLLDRC----FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ceeehHHHHHHHHhh----cChHHHHHHHHHHhccCCCcEEEE
Confidence 579999999988755 5677899999999999 8988765
No 235
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.12 E-value=7.4e-05 Score=59.61 Aligned_cols=117 Identities=15% Similarity=0.060 Sum_probs=78.4
Q ss_pred EEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCe
Q 024797 88 VLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF 166 (262)
Q Consensus 88 vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f 166 (262)
|.||||--|.+...+++.+ ..+++++|+++.-++.|++..... ++..++++.++|..+.-. +.+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~--------~l~~~i~~rlgdGL~~l~-----~~e~~ 67 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY--------GLEDRIEVRLGDGLEVLK-----PGEDV 67 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--------T-TTTEEEEE-SGGGG-------GGG--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--------CCcccEEEEECCcccccC-----CCCCC
Confidence 6899999999999998754 446999999999999999998843 445679999999755321 23337
Q ss_pred eEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhhhcCCc
Q 024797 167 DICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLA 223 (262)
Q Consensus 167 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~ 223 (262)
|+|++.+.=- .....++.+....++....|++.-.+....++.+....++.
T Consensus 68 d~ivIAGMGG------~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~ 118 (205)
T PF04816_consen 68 DTIVIAGMGG------ELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFE 118 (205)
T ss_dssp -EEEEEEE-H------HHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEE
T ss_pred CEEEEecCCH------HHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCE
Confidence 8888766332 55778888888888777778886555555555555544433
No 236
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.11 E-value=2.9e-05 Score=65.86 Aligned_cols=94 Identities=14% Similarity=0.185 Sum_probs=68.6
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
.++.++||+||++|.++..+++.+. .|++||..+ |-... .. ..+|....+|...... +
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~~L---~~------------~~~V~h~~~d~fr~~p-----~ 267 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQSL---MD------------TGQVEHLRADGFKFRP-----P 267 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCHhh---hC------------CCCEEEEeccCcccCC-----C
Confidence 5789999999999999999987766 899999655 22211 11 4468888888766542 2
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCC--cEEEEEe
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG--GTFIGTM 206 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~g--G~li~~~ 206 (262)
.+.+|+|+|..+.. +..+..-+.++|..| ...|++.
T Consensus 268 ~~~vDwvVcDmve~--------P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 268 RKNVDWLVCDMVEK--------PARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred CCCCCEEEEecccC--------HHHHHHHHHHHHhcCcccEEEEEE
Confidence 57899999987653 456777788888766 4566654
No 237
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.10 E-value=4.5e-05 Score=62.64 Aligned_cols=130 Identities=14% Similarity=0.115 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHHHHhcc-CCCeEEEecCCC--CcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCC
Q 024797 67 KKLNNWIKSVLVQLYAR-RGDVVLDLACGK--GGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS 141 (262)
Q Consensus 67 ~~~~~~~~~~l~~~~~~-~~~~vLDiGcG~--G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~ 141 (262)
+.-+.|+.+.+..+... .-...||+|||- -...-.+++ .+..+|+-+|.++..+..++..+... ..
T Consensus 50 r~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~---------~~ 120 (267)
T PF04672_consen 50 RANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN---------PR 120 (267)
T ss_dssp HHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT----------TT
T ss_pred HHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC---------CC
Confidence 34445566666655544 335799999994 234555554 46678999999999999999987631 11
Q ss_pred CCeEEEeCccccccc-------ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 142 FPARLICGDCYEVHL-------DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 142 ~~v~~~~~d~~~~~~-------~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
....++++|+.+..- ..++ .-.+-=.|++..++||+ ++.+++..++..++..|.||.+|+++..
T Consensus 121 g~t~~v~aD~r~p~~iL~~p~~~~~l-D~~rPVavll~~vLh~v-~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 121 GRTAYVQADLRDPEAILAHPEVRGLL-DFDRPVAVLLVAVLHFV-PDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp SEEEEEE--TT-HHHHHCSHHHHCC---TTS--EEEECT-GGGS--CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred ccEEEEeCCCCCHHHHhcCHHHHhcC-CCCCCeeeeeeeeeccC-CCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 237899999876431 0111 22333356667788876 4556789999999999999999999853
No 238
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.06 E-value=6.9e-05 Score=64.59 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=83.2
Q ss_pred HhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797 80 LYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (262)
Q Consensus 80 ~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (262)
+.+.++.+|||+++.+|.-+.+++. ...+.+++.|.+..-+...+.++..+|..+ ......|...++..
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n---------tiv~n~D~~ef~~~ 307 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN---------TIVSNYDGREFPEK 307 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc---------eEEEccCccccccc
Confidence 3466899999999999998877765 466789999999999999999887655433 55667777665422
Q ss_pred cccCCCCCeeEEEEcccccc--c---------C-------CCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 158 KVLADDAPFDICSCQFAMHY--S---------W-------STEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~--~---------~-------~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
. ++. +||-|+...-..- + + .-...++++|..+...+++||+|+-++.
T Consensus 308 ~--~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 308 E--FPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred c--cCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 1 133 8999996431111 0 0 0123457889999999999999998764
No 239
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=2.7e-05 Score=59.88 Aligned_cols=106 Identities=24% Similarity=0.249 Sum_probs=69.8
Q ss_pred ccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC-ccccccc--
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHL-- 156 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~-- 156 (262)
..|+.+|||+||.+|..+....+ .+.+.|.|||+-. ..+ ...+.++++ |+.+...
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh--------~~p------------~~Ga~~i~~~dvtdp~~~~ 126 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH--------IEP------------PEGATIIQGNDVTDPETYR 126 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee--------ccC------------CCCcccccccccCCHHHHH
Confidence 45899999999999998887655 4778899999854 111 233666666 6654321
Q ss_pred --ccccCCCCCeeEEEEccccc--------ccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797 157 --DKVLADDAPFDICSCQFAMH--------YSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 157 --~~~~~~~~~fD~V~~~~~l~--------~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 209 (262)
.+.+ ++..+|+|++.+.-. |. ...+....++.-....++|+|.+++.+++.
T Consensus 127 ki~e~l-p~r~VdvVlSDMapnaTGvr~~Dh~-~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 127 KIFEAL-PNRPVDVVLSDMAPNATGVRIRDHY-RSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred HHHHhC-CCCcccEEEeccCCCCcCcchhhHH-HHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 1122 567899999876322 11 012233445555667789999999998753
No 240
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.04 E-value=2.1e-05 Score=66.16 Aligned_cols=91 Identities=18% Similarity=0.147 Sum_probs=67.4
Q ss_pred HHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (262)
Q Consensus 73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 151 (262)
++.++..+.+.++..++|.-||.|.++..++.. +.++|+|+|.++.+++.|++++.. ...++.+++++.
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~----------~~~R~~~i~~nF 78 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD----------FEGRVVLIHDNF 78 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh----------cCCcEEEEeCCH
Confidence 344555566678889999999999999999874 347999999999999999998762 234688999988
Q ss_pred cccccccccCCCCCeeEEEEcc
Q 024797 152 YEVHLDKVLADDAPFDICSCQF 173 (262)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~ 173 (262)
.++...-......++|.|+...
T Consensus 79 ~~l~~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 79 ANFFEHLDELLVTKIDGILVDL 100 (305)
T ss_pred HHHHHHHHhcCCCcccEEEEec
Confidence 7654210001235689998754
No 241
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.02 E-value=9.2e-06 Score=62.45 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=75.5
Q ss_pred CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (262)
.+.+.|+|+|+|.++... .+...+|++++.++.....|.+++.- +...+++++.+|+....+ .
T Consensus 33 ~d~~~DLGaGsGiLs~~A-a~~A~rViAiE~dPk~a~~a~eN~~v---------~g~~n~evv~gDA~~y~f-------e 95 (252)
T COG4076 33 EDTFADLGAGSGILSVVA-AHAAERVIAIEKDPKRARLAEENLHV---------PGDVNWEVVVGDARDYDF-------E 95 (252)
T ss_pred hhceeeccCCcchHHHHH-HhhhceEEEEecCcHHHHHhhhcCCC---------CCCcceEEEecccccccc-------c
Confidence 378999999999766654 44577899999999999999998642 224569999999998875 4
Q ss_pred CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (262)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li 203 (262)
..|+|+|-+.=--+ -.+.+-.++..+.+.|+.++.++
T Consensus 96 ~ADvvicEmlDTaL--i~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 96 NADVVICEMLDTAL--IEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred ccceeHHHHhhHHh--hcccccHHHHHHHHHhhcCCccc
Confidence 56999885521111 12456678888888999999887
No 242
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.02 E-value=0.0001 Score=61.14 Aligned_cols=109 Identities=16% Similarity=0.080 Sum_probs=65.8
Q ss_pred CCeEEEecCCCCcchHHHHhc--C-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 85 GDVVLDLACGKGGDLIKWDKA--K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~--~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
+.+|+=||||+=-++..++.. . ...++++|+++++++.+++..... .++..++.|+++|..+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-------~~L~~~m~f~~~d~~~~~~----- 188 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-------LGLSKRMSFITADVLDVTY----- 188 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----------HH-SSEEEEES-GGGG-G-----
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-------ccccCCeEEEecchhcccc-----
Confidence 359999999986565555442 2 346899999999999999876511 1335679999999877654
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
+-..||+|+...... + +.+...+++.++.+.++||..+++-..+
T Consensus 189 dl~~~DvV~lAalVg-~--~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 189 DLKEYDVVFLAALVG-M--DAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp G----SEEEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred ccccCCEEEEhhhcc-c--ccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 346899998766443 2 4567889999999999999999886443
No 243
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.02 E-value=0.00012 Score=57.69 Aligned_cols=106 Identities=19% Similarity=0.093 Sum_probs=79.8
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
.++.+||++|-|-|....++-+.+...-+-++..++.+...++..- .-..+|..+.+-.++... ++ +
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw----------~ek~nViil~g~WeDvl~-~L--~ 166 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGW----------REKENVIILEGRWEDVLN-TL--P 166 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccc----------ccccceEEEecchHhhhc-cc--c
Confidence 6789999999999966665544566678899999999999887643 113567777776554321 11 5
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
++.||-|+-.-.-.+. ++...+.+.+.+.|||+|++-+.
T Consensus 167 d~~FDGI~yDTy~e~y----Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 167 DKHFDGIYYDTYSELY----EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred ccCcceeEeechhhHH----HHHHHHHHHHhhhcCCCceEEEe
Confidence 7889999866554555 88999999999999999998654
No 244
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=0.00011 Score=57.33 Aligned_cols=109 Identities=14% Similarity=0.108 Sum_probs=76.6
Q ss_pred HHhccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797 79 QLYARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (262)
Q Consensus 79 ~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (262)
.+...++++||=+|+.+|.....+.. .+.+.+++|++|+.+....-..+.+ ..|+-.+.+|+....--
T Consensus 71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-----------R~Ni~PIL~DA~~P~~Y 139 (231)
T COG1889 71 NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-----------RPNIIPILEDARKPEKY 139 (231)
T ss_pred cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-----------CCCceeeecccCCcHHh
Confidence 34567899999999999998888765 3567899999999876655444432 33477788998653211
Q ss_pred cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
.. --+.+|+|+..-+-- ...+-+..++...|++||.+++.+
T Consensus 140 ~~--~Ve~VDviy~DVAQp------~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 140 RH--LVEKVDVIYQDVAQP------NQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred hh--hcccccEEEEecCCc------hHHHHHHHHHHHhcccCCeEEEEE
Confidence 11 135699998765432 445667778899999999776653
No 245
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.89 E-value=0.00012 Score=62.08 Aligned_cols=118 Identities=15% Similarity=0.063 Sum_probs=81.9
Q ss_pred cCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHH--hccCccccccccCCCCCeEEEeCcccccccccc
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTR--YNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (262)
+...+||-+|.|.|--+.++++.+ ..+++-+|++|+|++.++.. +...+. ..-...+++++..|+.++-..
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~----~sf~dpRv~Vv~dDAf~wlr~-- 361 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQ----GSFSDPRVTVVNDDAFQWLRT-- 361 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhcc----CCccCCeeEEEeccHHHHHHh--
Confidence 345689999999998888888765 77899999999999999843 221111 112346799999998776432
Q ss_pred cCCCCCeeEEEEcccccccCC-CHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 160 LADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
..+.||.||....=..-.. ..-.-..+..-+.+.|+++|.+++...+
T Consensus 362 --a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 362 --AADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred --hcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 3568999997652110000 1112356778899999999999986543
No 246
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.86 E-value=1.7e-05 Score=56.45 Aligned_cols=100 Identities=21% Similarity=0.225 Sum_probs=44.7
Q ss_pred EEecCCCCcchHHHHhc--CC--CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797 89 LDLACGKGGDLIKWDKA--KI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (262)
Q Consensus 89 LDiGcG~G~~~~~l~~~--~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (262)
||+|+..|..+..+++. .. .+++++|..+. .+.+++.+.+ ..+..++++++++..+.- ... +.+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~--------~~~~~~~~~~~g~s~~~l-~~~--~~~ 68 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKK--------AGLSDRVEFIQGDSPDFL-PSL--PDG 68 (106)
T ss_dssp --------------------------EEEESS---------------------GGG-BTEEEEES-THHHH-HHH--HH-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhh--------cCCCCeEEEEEcCcHHHH-HHc--CCC
Confidence 68999999887777652 22 37999999995 2222222221 123456999999986541 111 247
Q ss_pred CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
++|+|+....- ..+.....+..+...|+|||.+++.
T Consensus 69 ~~dli~iDg~H-----~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 69 PIDLIFIDGDH-----SYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp -EEEEEEES--------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CEEEEEECCCC-----CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 89999987732 2366778899999999999999874
No 247
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.85 E-value=5.3e-05 Score=58.76 Aligned_cols=107 Identities=21% Similarity=0.175 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
.+++|||+|+|+|-.....++.+...|+..|+.+..+..++-+... ....+.+...|... ++
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~a----------ngv~i~~~~~d~~g--------~~ 140 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAA----------NGVSILFTHADLIG--------SP 140 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhh----------ccceeEEeeccccC--------CC
Confidence 6889999999999888777777777899999998777666655442 23457777777654 25
Q ss_pred CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (262)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~ 212 (262)
..||+|+...++.. .....+++.-..+....|-.+++..|....+
T Consensus 141 ~~~Dl~LagDlfy~----~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 141 PAFDLLLAGDLFYN----HTEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred cceeEEEeeceecC----chHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 78999998876652 3556677774444445555566666655443
No 248
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.85 E-value=0.0001 Score=58.08 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccc---cc-----
Q 024797 67 KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADH---HQ----- 135 (262)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~----- 135 (262)
+.-.+..++.+..+....+-++.|.+||.|.++-.+.- ..-..|+|.|+++++++.|++++.-+... .+
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~ 113 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELR 113 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHH
Confidence 33334444444433334556999999999987665432 23346999999999999999987433211 00
Q ss_pred -------------------------cccCCCCCeEEEeCcccccccccccCCCCCeeEEEEccccccc--CC---CHHHH
Q 024797 136 -------------------------RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS--WS---TEARA 185 (262)
Q Consensus 136 -------------------------~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~--~~---~~~~~ 185 (262)
...+........+.|+++.............|+|+...-.-++ |. +....
T Consensus 114 ~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~ 193 (246)
T PF11599_consen 114 ELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPV 193 (246)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHH
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcH
Confidence 1112234467888888773321111123446999986533322 22 34456
Q ss_pred HHHHHHHHhccCCCcEEEEEeCChHHHHHHHhhhcCCccccc
Q 024797 186 RRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNS 227 (262)
Q Consensus 186 ~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~ 227 (262)
..+|..++.+|..+++++++.-........++..+.+++|..
T Consensus 194 ~~ml~~l~~vLp~~sVV~v~~k~~Ki~~~~~r~~~rlKvGkR 235 (246)
T PF11599_consen 194 AQMLNSLAPVLPERSVVAVSDKGRKIPHDRFRRLERLKVGKR 235 (246)
T ss_dssp HHHHHHHHCCS-TT-EEEEEESSSS---TTS--SEEEEETTE
T ss_pred HHHHHHHHhhCCCCcEEEEecCCcccccchhHHHHHHhccce
Confidence 889999999996667776644333333334444444455544
No 249
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.00014 Score=64.33 Aligned_cols=63 Identities=19% Similarity=0.362 Sum_probs=51.7
Q ss_pred ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (262)
.+.+..+||+.||+|.++..++ .+.+.|+||++++++++-|++++...+ ..|++|+++-++++
T Consensus 381 l~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~Ng---------isNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQING---------ISNATFIVGQAEDL 443 (534)
T ss_pred CCCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchhcC---------ccceeeeecchhhc
Confidence 4567899999999999988875 466789999999999999999887433 45699999955543
No 250
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.00012 Score=58.79 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=72.2
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeE-EEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR-LICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~ 161 (262)
.++..+||+|+.||.++..+++.+...|+++|..-..+.---+. ..++. ....++..+.....
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~--------------d~rV~~~E~tN~r~l~~~~~-- 141 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN--------------DPRVIVLERTNVRYLTPEDF-- 141 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc--------------CCcEEEEecCChhhCCHHHc--
Confidence 36889999999999999999998888999999987655433221 22333 44455555432211
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
.+..|+++|.-++. ....+|..+..+++++|.++.-+
T Consensus 142 -~~~~d~~v~DvSFI-------SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 142 -TEKPDLIVIDVSFI-------SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred -ccCCCeEEEEeehh-------hHHHHHHHHHHhcCCCceEEEEe
Confidence 23679999988775 34778999999999999887643
No 251
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.74 E-value=0.00025 Score=59.46 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHhcc--CCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCe
Q 024797 68 KLNNWIKSVLVQLYAR--RGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA 144 (262)
Q Consensus 68 ~~~~~~~~~l~~~~~~--~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v 144 (262)
.+..|+..+|...... ..-++||||+|..-.-..+.. ...-+++|+|+++.+++.|++..... ..+..+|
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N-------~~L~~~I 156 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERN-------PNLESRI 156 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT--------T-TTTE
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhc-------cccccce
Confidence 4556777776544322 245899999998754333322 23457999999999999999998731 1456678
Q ss_pred EEEeCcccccccccccCCCCCeeEEEEcccccc
Q 024797 145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHY 177 (262)
Q Consensus 145 ~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~ 177 (262)
+++...-...-+.....+.+.||.++|+--++-
T Consensus 157 ~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 157 ELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp EEEE--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred EEEEcCCccccchhhhcccceeeEEecCCcccc
Confidence 876654222112222224578999999887763
No 252
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=9.1e-06 Score=60.46 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=48.5
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhh
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~ 218 (262)
.+++.|+|++-.+++|+ +.+.-..+++++++.|||||+|-+.+|+.......+..
T Consensus 44 ~dns~d~iyaeHvlEHl--t~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~ 98 (185)
T COG4627 44 EDNSVDAIYAEHVLEHL--TYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQH 98 (185)
T ss_pred CCcchHHHHHHHHHHHH--hHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhh
Confidence 78999999999999999 77778899999999999999999999998776555544
No 253
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.67 E-value=0.00043 Score=51.38 Aligned_cols=88 Identities=20% Similarity=0.261 Sum_probs=59.8
Q ss_pred eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccc-----cccCCCHH
Q 024797 109 YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAM-----HYSWSTEA 183 (262)
Q Consensus 109 ~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l-----~~~~~~~~ 183 (262)
+|+|+|+-+++++.+++++.+.+ ...++++++.+-..+... . +.+++|+++.+... +-+....+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~--------~~~~v~li~~sHe~l~~~--i-~~~~v~~~iFNLGYLPggDk~i~T~~~ 69 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG--------LEDRVTLILDSHENLDEY--I-PEGPVDAAIFNLGYLPGGDKSITTKPE 69 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---------GSGEEEEES-GGGGGGT-----S--EEEEEEEESB-CTS-TTSB--HH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC--------CCCcEEEEECCHHHHHhh--C-ccCCcCEEEEECCcCCCCCCCCCcCcH
Confidence 58999999999999999998532 334799999887776531 1 23589999876532 11122345
Q ss_pred HHHHHHHHHHhccCCCcEEEEEeC
Q 024797 184 RARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 184 ~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
.-..+++.+.+.|+|||.+++.+.
T Consensus 70 TTl~Al~~al~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 70 TTLKALEAALELLKPGGIITIVVY 93 (140)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHhhccCCEEEEEEe
Confidence 567889999999999999988774
No 254
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.00013 Score=54.88 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=73.8
Q ss_pred cCCCeEEEecCCC-CcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 83 RRGDVVLDLACGK-GGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 83 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
..+.+|||+|.|- |.-++.++. .....|..+|-++++++-.++...... . ....++..+..+...-.. .
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~-----~-s~~tsc~vlrw~~~~aqs---q 98 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNM-----A-SSLTSCCVLRWLIWGAQS---Q 98 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccc-----c-cccceehhhHHHHhhhHH---H
Confidence 3568899999985 433333332 355579999999999998887654100 0 001112122211111000 0
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV 211 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~ 211 (262)
.....||+|++..++..- +....+++.++..|+|.|..++..|....
T Consensus 99 ~eq~tFDiIlaADClFfd----E~h~sLvdtIk~lL~p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 99 QEQHTFDIILAADCLFFD----EHHESLVDTIKSLLRPSGRALLFSPRRGQ 145 (201)
T ss_pred HhhCcccEEEeccchhHH----HHHHHHHHHHHHHhCcccceeEecCcccc
Confidence 135689999999887643 77888999999999999998888886543
No 255
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.54 E-value=0.00022 Score=53.46 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=36.5
Q ss_pred eEEEecCCCCcchHHHHhcCC-CeEEEEeCChhHHHHHHHHhcc
Q 024797 87 VVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNG 129 (262)
Q Consensus 87 ~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~ 129 (262)
++||+|||.|..+..++.... .+++++|+++.+.+.+++++..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~ 44 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKL 44 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHH
Confidence 489999999999888876443 3799999999999999988763
No 256
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.49 E-value=0.0005 Score=54.46 Aligned_cols=110 Identities=21% Similarity=0.274 Sum_probs=56.5
Q ss_pred CCCeEEEecCCCCcchHHHHh-----cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797 84 RGDVVLDLACGKGGDLIKWDK-----AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (262)
+++.|+|+|.-.|.-+..++. ...++|+|+|+.-......... .+....++++++||..+.....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e----------~hp~~~rI~~i~Gds~d~~~~~ 101 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIE----------SHPMSPRITFIQGDSIDPEIVD 101 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGG----------G----TTEEEEES-SSSTHHHH
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHh----------hccccCceEEEECCCCCHHHHH
Confidence 678999999999987776654 2556899999965433222111 1233467999999987654211
Q ss_pred c---cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 159 V---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 159 ~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
. ......-.+|+... -|. .+...+.|+.....+++|+++|+....
T Consensus 102 ~v~~~~~~~~~vlVilDs-~H~----~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 102 QVRELASPPHPVLVILDS-SHT----HEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp TSGSS----SSEEEEESS---------SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred HHHHhhccCCceEEEECC-Ccc----HHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 1 10123344665444 221 144577888899999999999985433
No 257
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.49 E-value=0.0014 Score=59.46 Aligned_cols=137 Identities=20% Similarity=0.275 Sum_probs=84.5
Q ss_pred CccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHh---cC--CCeEEEEeCChhHHHHHHHHhccCccccc
Q 024797 61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK---AK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQ 135 (262)
Q Consensus 61 ~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~ 135 (262)
+..+.++.+...+..++ .+.+..+|+|..||+|++.....+ .. ...++|.|+++.....|+.++--.+.
T Consensus 166 GEfyTP~~v~~liv~~l---~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi--- 239 (489)
T COG0286 166 GEFYTPREVSELIVELL---DPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI--- 239 (489)
T ss_pred CccCChHHHHHHHHHHc---CCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC---
Confidence 45566676655544443 445677999999999998776544 12 24699999999999999988763222
Q ss_pred cccCCCCCeEEEeCcccccccccccCCCCCeeEEEEccccc-------------------cc-CCC-HHHHHHHHHHHHh
Q 024797 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH-------------------YS-WST-EARARRALANVSA 194 (262)
Q Consensus 136 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~-------------------~~-~~~-~~~~~~~l~~~~~ 194 (262)
...+....+|-..-|...-....+.||.|+++--+. +- +.+ ...-..++..+..
T Consensus 240 -----~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~ 314 (489)
T COG0286 240 -----EGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILY 314 (489)
T ss_pred -----CccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHH
Confidence 112344444433332210001236799888764221 00 111 1122788999999
Q ss_pred ccCCCcEEEEEeCC
Q 024797 195 LLRPGGTFIGTMPD 208 (262)
Q Consensus 195 ~L~~gG~li~~~~~ 208 (262)
.|+|||+..+.+|+
T Consensus 315 ~l~~~g~aaivl~~ 328 (489)
T COG0286 315 KLKPGGRAAIVLPD 328 (489)
T ss_pred hcCCCceEEEEecC
Confidence 99999987776664
No 258
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.44 E-value=0.0086 Score=47.67 Aligned_cols=117 Identities=14% Similarity=0.048 Sum_probs=83.1
Q ss_pred cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
+.+.++.|+||--|.+...+.+. ....+++.|+++..++.|.+.+.. .++...++..++|....-.
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~--------~~l~~~i~vr~~dgl~~l~----- 81 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKK--------NNLSERIDVRLGDGLAVLE----- 81 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHh--------cCCcceEEEeccCCccccC-----
Confidence 45667999999999999998874 556799999999999999998873 4556678888888743221
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhh
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~ 218 (262)
.+..+|+|+..+.=- .....++.+-.+.|+.=-++++.-.+....++.+..
T Consensus 82 ~~d~~d~ivIAGMGG------~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~ 132 (226)
T COG2384 82 LEDEIDVIVIAGMGG------TLIREILEEGKEKLKGVERLILQPNIHTYELREWLS 132 (226)
T ss_pred ccCCcCEEEEeCCcH------HHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHH
Confidence 455789998766332 457788888888887544566542222333444333
No 259
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.40 E-value=0.00073 Score=57.00 Aligned_cols=91 Identities=22% Similarity=0.245 Sum_probs=61.4
Q ss_pred HHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (262)
Q Consensus 73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 151 (262)
++.++..+.+.++..++|.--|.|.++..+++. +.++++|+|-++.+++.|++++. ....++.++.+++
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~----------~~~~r~~~~~~~F 78 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK----------KFDDRFIFIHGNF 78 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC----------CCCTTEEEEES-G
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh----------hccceEEEEeccH
Confidence 344555666788899999999999999999874 45799999999999999998876 2356789999988
Q ss_pred cccccccccC-CCCCeeEEEEcc
Q 024797 152 YEVHLDKVLA-DDAPFDICSCQF 173 (262)
Q Consensus 152 ~~~~~~~~~~-~~~~fD~V~~~~ 173 (262)
.++...-... ....+|.|+...
T Consensus 79 ~~l~~~l~~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 79 SNLDEYLKELNGINKVDGILFDL 101 (310)
T ss_dssp GGHHHHHHHTTTTS-EEEEEEE-
T ss_pred HHHHHHHHHccCCCccCEEEEcc
Confidence 7664211111 235799998753
No 260
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.0019 Score=47.96 Aligned_cols=122 Identities=14% Similarity=0.124 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEE
Q 024797 67 KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL 146 (262)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~ 146 (262)
..-.+.+...+..+..++..+.+|+|+|.|+.....++.+....+|+++++-.+.+++-+.-. .+......|
T Consensus 55 pAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R--------~g~~k~trf 126 (199)
T KOG4058|consen 55 PATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWR--------AGCAKSTRF 126 (199)
T ss_pred CccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHH--------Hhcccchhh
Confidence 333444555666666677789999999999999888776655789999999999888766442 244556778
Q ss_pred EeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE-eCChH
Q 024797 147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT-MPDAN 210 (262)
Q Consensus 147 ~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~-~~~~~ 210 (262)
...|+-..++ ..|.-|++..+-..+ ..+-.++..-+..+..++.+ +|-+.
T Consensus 127 ~RkdlwK~dl-------~dy~~vviFgaes~m-------~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 127 RRKDLWKVDL-------RDYRNVVIFGAESVM-------PDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred hhhhhhhccc-------cccceEEEeehHHHH-------hhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 8888776665 234444444433222 33334566566777776644 45444
No 261
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.36 E-value=0.002 Score=53.71 Aligned_cols=112 Identities=16% Similarity=0.130 Sum_probs=65.4
Q ss_pred CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCcccc---------c-----------------c--
Q 024797 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH---------Q-----------------R-- 136 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---------~-----------------~-- 136 (262)
..+||-.|||.|+++..++..+. .+-|=++|--|+-...=.+.--..+| . .
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 46899999999999999876544 45666777766554432221000000 0 0
Q ss_pred ---ccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797 137 ---RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (262)
Q Consensus 137 ---~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li 203 (262)
..+.......-.||+.+.--. ....+.||+|+..+.+. +..+....++.+.++|+|||+.+
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~--s~~~~~~d~VvTcfFID----Ta~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGT--SSGAGSYDVVVTCFFID----TAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred ccccCCCCCCccccccceeEEecC--cCCCCccceEEEEEEee----chHHHHHHHHHHHHhccCCcEEE
Confidence 000000111122343322100 00235799999876554 66889999999999999999866
No 262
>PRK10742 putative methyltransferase; Provisional
Probab=97.35 E-value=0.0009 Score=54.52 Aligned_cols=96 Identities=9% Similarity=-0.064 Sum_probs=65.9
Q ss_pred HHHHHhccCCC--eEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccC-CCCCeEEEeCccc
Q 024797 76 VLVQLYARRGD--VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FSFPARLICGDCY 152 (262)
Q Consensus 76 ~l~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~ 152 (262)
++....++++. +|||+-+|.|+.+..++..++ .|+++|-++.+....+..+....... .... ...+++++++|..
T Consensus 78 l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~-~~~~~~~~ri~l~~~da~ 155 (250)
T PRK10742 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADA-EIGGWLQERLQLIHASSL 155 (250)
T ss_pred HHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhcc-ccchhhhceEEEEeCcHH
Confidence 33444456666 899999999999999887665 59999999999988888776321100 0001 1245888899976
Q ss_pred ccccccccCCCCCeeEEEEcccccc
Q 024797 153 EVHLDKVLADDAPFDICSCQFAMHY 177 (262)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~ 177 (262)
++-.. ....||+|++.-.+.|
T Consensus 156 ~~L~~----~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 156 TALTD----ITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHhh----CCCCCcEEEECCCCCC
Confidence 65321 2347999998776654
No 263
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.27 E-value=0.0018 Score=51.97 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=72.9
Q ss_pred HHHHhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhH----HHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797 77 LVQLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGS----IEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (262)
Q Consensus 77 l~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~----~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d 150 (262)
+.+++.+|+.+||-+|+++|........ .+.+.|++++.|... +..|+++ .|+..+.-|
T Consensus 149 vdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---------------tNiiPIiED 213 (317)
T KOG1596|consen 149 VDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---------------TNIIPIIED 213 (317)
T ss_pred ccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---------------CCceeeecc
Confidence 3456778999999999999988777654 456679999999764 4444443 246667777
Q ss_pred ccccc-cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 151 CYEVH-LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 151 ~~~~~-~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
+.... ++. .-+-+|+|++.-.- ++..+.+.-+++..|++||.+++++
T Consensus 214 ArhP~KYRm---lVgmVDvIFaDvaq------pdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 214 ARHPAKYRM---LVGMVDVIFADVAQ------PDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred CCCchheee---eeeeEEEEeccCCC------chhhhhhhhhhhhhhccCCeEEEEE
Confidence 75421 111 12467888765432 2445566677899999999999986
No 264
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00088 Score=56.68 Aligned_cols=113 Identities=14% Similarity=0.158 Sum_probs=63.5
Q ss_pred CCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 84 RGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
...+|||+|.|+|.-+..+-. .....++.++.|+..-+........... .....+..-++.|-..++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-----~~td~r~s~vt~dRl~lp------ 181 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-----EKTDWRASDVTEDRLSLP------ 181 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-----ccCCCCCCccchhccCCC------
Confidence 456799999999954433311 1233577778887554444433321100 001111111222222222
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
....|++|++..-+-+. ..+..+...++.++..+.|||.|++..+.
T Consensus 182 ~ad~ytl~i~~~eLl~d-~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 182 AADLYTLAIVLDELLPD-GNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred ccceeehhhhhhhhccc-cCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 35667877776655444 23334556889999999999999988653
No 265
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.23 E-value=0.0015 Score=51.20 Aligned_cols=119 Identities=13% Similarity=0.155 Sum_probs=68.8
Q ss_pred CCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
..-.+.|||||-|.++..++.. +..-++|.+|-...-++.++++.-+... .+.+...++.+...++..+- ++. +.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~--~a~~~~~ni~vlr~namk~l-pn~-f~ 135 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRT--SAEGQYPNISVLRTNAMKFL-PNF-FE 135 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcc--ccccccccceeeeccchhhc-cch-hh
Confidence 3457999999999999998754 3435899999999988888887532211 11222344556555543321 111 12
Q ss_pred CCCeeEEEEcccccccCCCH----HHHHHHHHHHHhccCCCcEEEEEe
Q 024797 163 DAPFDICSCQFAMHYSWSTE----ARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~----~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
.++.+-.+..+---|++... --....+.+..-+|++||.++..+
T Consensus 136 kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 136 KGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred hcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 23333333222222221000 001456788889999999987654
No 266
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.18 E-value=0.0027 Score=52.86 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=68.2
Q ss_pred HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcC--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (262)
Q Consensus 73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d 150 (262)
+...+..+.+.++...+|.--|.|.++..++... .++++|+|-++.+++.|++++. ....++.+++.+
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~----------~~~~r~~~v~~~ 81 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLK----------EFDGRVTLVHGN 81 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhh----------ccCCcEEEEeCc
Confidence 4556666778889999999999999999998743 4679999999999999999886 234578899988
Q ss_pred ccccccccccCCCCCeeEEEEc
Q 024797 151 CYEVHLDKVLADDAPFDICSCQ 172 (262)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~ 172 (262)
+.++...-.....+++|-|+..
T Consensus 82 F~~l~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 82 FANLAEALKELGIGKVDGILLD 103 (314)
T ss_pred HHHHHHHHHhcCCCceeEEEEe
Confidence 7665431111124578888864
No 267
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.16 E-value=0.0024 Score=51.97 Aligned_cols=79 Identities=19% Similarity=0.194 Sum_probs=55.4
Q ss_pred CCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
++.+|+|||||.--++..+... ....|+|+|++..+++.....+..+ ..+..+...|...-+ +
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l----------~~~~~~~v~Dl~~~~------~ 168 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL----------GVPHDARVRDLLSDP------P 168 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT----------T-CEEEEEE-TTTSH------T
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh----------CCCcceeEeeeeccC------C
Confidence 5789999999987777766553 3347999999999999999887643 344667777876654 4
Q ss_pred CCCeeEEEEccccccc
Q 024797 163 DAPFDICSCQFAMHYS 178 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~ 178 (262)
....|+.++.=+++.+
T Consensus 169 ~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 169 KEPADLALLLKTLPCL 184 (251)
T ss_dssp TSEESEEEEET-HHHH
T ss_pred CCCcchhhHHHHHHHH
Confidence 6779999987777654
No 268
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.08 E-value=0.0018 Score=56.53 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=76.1
Q ss_pred CCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCC-CeEEEeCccccccccccc
Q 024797 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF-PARLICGDCYEVHLDKVL 160 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~ 160 (262)
.+.+|||.-+|+|.=++.++.. ....|+.-|+|+++++.+++++.- ++... .+++.+.|+..+-..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~--------N~~~~~~~~v~~~DAn~ll~~--- 117 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLEL--------NGLEDERIEVSNMDANVLLYS--- 117 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHH--------CT-SGCCEEEEES-HHHHHCH---
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhh--------ccccCceEEEehhhHHHHhhh---
Confidence 3568999999999888877764 455799999999999999999763 23333 588889998765321
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~ 212 (262)
....||+|=+.- --.+..++..+.+.++.||.|.++..|...+
T Consensus 118 -~~~~fD~IDlDP--------fGSp~pfldsA~~~v~~gGll~vTaTD~a~L 160 (377)
T PF02005_consen 118 -RQERFDVIDLDP--------FGSPAPFLDSALQAVKDGGLLCVTATDTAVL 160 (377)
T ss_dssp -STT-EEEEEE----------SS--HHHHHHHHHHEEEEEEEEEEE--HHHH
T ss_pred -ccccCCEEEeCC--------CCCccHhHHHHHHHhhcCCEEEEeccccccc
Confidence 367899996432 2345678999999999999999998776654
No 269
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.02 E-value=0.031 Score=45.35 Aligned_cols=108 Identities=14% Similarity=0.049 Sum_probs=63.4
Q ss_pred cCCCeEEEecCCCCcchHHHH-hcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGKGGDLIKWD-KAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
-.+.+||-+|=.-- .++.++ .....+++.+|+++.+++..++...+. +.+++....|+.+- +++.
T Consensus 43 L~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~----------gl~i~~~~~DlR~~-LP~~-- 108 (243)
T PF01861_consen 43 LEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEE----------GLPIEAVHYDLRDP-LPEE-- 108 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH----------T--EEEE---TTS----TT--
T ss_pred ccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc----------CCceEEEEeccccc-CCHH--
Confidence 36889999996543 222222 245668999999999999999887643 33488899998653 2110
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCc-EEEEEeCCh
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGG-TFIGTMPDA 209 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG-~li~~~~~~ 209 (262)
-.++||++++.-.. +.+-...++.+....|+..| ..++...+.
T Consensus 109 ~~~~fD~f~TDPPy-----T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 109 LRGKFDVFFTDPPY-----TPEGLKLFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp TSS-BSEEEE---S-----SHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred HhcCCCEEEeCCCC-----CHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence 13899999987633 56788999999999998866 566665443
No 270
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.00 E-value=0.0014 Score=58.15 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=62.2
Q ss_pred CCeEEEecCCCCcchHHHHhcCCC--eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc-cccccccccC
Q 024797 85 GDVVLDLACGKGGDLIKWDKAKIG--YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVHLDKVLA 161 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~ 161 (262)
-..|+|+.+|.|.++..+...+.- .|+-+ ..+..+.....+-- +- ...|. +.++.
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGL---------------IG-~yhDWCE~fsT----- 423 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGL---------------IG-VYHDWCEAFST----- 423 (506)
T ss_pred eeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhccc---------------ch-hccchhhccCC-----
Confidence 347999999999999998654421 23333 23334444333311 11 12232 22332
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
=+.+||+|-+...+... ...-+...+|-++-|+|+|||.+++-
T Consensus 424 YPRTYDLlHA~~lfs~~-~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 424 YPRTYDLLHADGLFSLY-KDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred CCcchhheehhhhhhhh-cccccHHHHHHHhHhhcCCCceEEEe
Confidence 25789999998877654 23345788999999999999999984
No 271
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.98 E-value=0.0019 Score=54.54 Aligned_cols=121 Identities=21% Similarity=0.209 Sum_probs=77.7
Q ss_pred hccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccC-CCCCeEEEeCcccccccccc
Q 024797 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FSFPARLICGDCYEVHLDKV 159 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~ 159 (262)
...+|+.|+|.-.|||.++...+. -.+.|+|.||+-.++...+... +.-..|.++.+ ...-+.++.+|..+-+++
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~-~si~aNFkQYg~~~~fldvl~~D~sn~~~r-- 280 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGED-ESIKANFKQYGSSSQFLDVLTADFSNPPLR-- 280 (421)
T ss_pred ccCCCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCC-cchhHhHHHhCCcchhhheeeecccCcchh--
Confidence 457999999999999998877643 3337999999988877432111 01111222222 233467888998887775
Q ss_pred cCCCCCeeEEEEcc------------------------cccccCCC-----HHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 160 LADDAPFDICSCQF------------------------AMHYSWST-----EARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 160 ~~~~~~fD~V~~~~------------------------~l~~~~~~-----~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
....||+|+|.- ...|.... ..-....+.-..++|..||++++=.|
T Consensus 281 --sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 281 --SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred --hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 467899999852 11122000 11234567778899999999998665
No 272
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.01 Score=50.81 Aligned_cols=121 Identities=21% Similarity=0.205 Sum_probs=74.1
Q ss_pred HhccCCCeEEEecCCCCcchHHHHhc---C--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797 80 LYARRGDVVLDLACGKGGDLIKWDKA---K--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (262)
Q Consensus 80 ~~~~~~~~vLDiGcG~G~~~~~l~~~---~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (262)
+...|+.+|||+++.+|.-+..+++. . .+.|++=|.+..-+........... ..+..+...|+..+
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~---------~~~~~v~~~~~~~~ 221 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP---------SPNLLVTNHDASLF 221 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC---------Ccceeeecccceec
Confidence 34579999999999999998887763 1 3479999999875555444332111 22344444444433
Q ss_pred cccc---c-cCCCCCeeEEEEcc------ccccc---CCC----------HHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797 155 HLDK---V-LADDAPFDICSCQF------AMHYS---WST----------EARARRALANVSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 155 ~~~~---~-~~~~~~fD~V~~~~------~l~~~---~~~----------~~~~~~~l~~~~~~L~~gG~li~~~~~~ 209 (262)
+-.. . ......||-|+|.- .+.+. |.. ..-+..++.+..+.||+||.++-++.+.
T Consensus 222 p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 222 PNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred cccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 3210 0 00235789998742 11100 000 1235678999999999999999988643
No 273
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.92 E-value=0.0069 Score=50.27 Aligned_cols=120 Identities=18% Similarity=0.113 Sum_probs=83.6
Q ss_pred ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
+..++++|-||-|.|......+++ ..+.+.-+|+.+..++..++..+...... -..+|.+.-||...+-- ..
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy-----~~~~v~l~iGDG~~fl~-~~- 191 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGY-----EGKKVKLLIGDGFLFLE-DL- 191 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhccc-----CCCceEEEeccHHHHHH-Hh-
Confidence 346789999999999998887765 45579999999999999998877543321 13568888888655421 11
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 209 (262)
..++||+|+....=.-........+..+.-+.+.||++|+++..-.+.
T Consensus 192 -~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~ 239 (337)
T KOG1562|consen 192 -KENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECM 239 (337)
T ss_pred -ccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence 468999999765322211111235667888999999999987755333
No 274
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.87 E-value=0.0058 Score=52.28 Aligned_cols=94 Identities=18% Similarity=0.154 Sum_probs=64.5
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc-cccccccc
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD-CYEVHLDK 158 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d-~~~~~~~~ 158 (262)
...|+++|+-+|+|. |.++..+++....+|+++|.|++-++.|++.-. ..++... ......
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA---------------d~~i~~~~~~~~~~-- 225 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA---------------DHVINSSDSDALEA-- 225 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC---------------cEEEEcCCchhhHH--
Confidence 457899999999982 455666666445789999999999999998654 2333332 111111
Q ss_pred ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
-.+.||+|+..-. . ..+....+.|++||.+++.
T Consensus 226 ---~~~~~d~ii~tv~-~----------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 226 ---VKEIADAIIDTVG-P----------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred ---hHhhCcEEEECCC-h----------hhHHHHHHHHhcCCEEEEE
Confidence 1234999987554 3 3457788899999998764
No 275
>PRK11524 putative methyltransferase; Provisional
Probab=96.85 E-value=0.0034 Score=52.91 Aligned_cols=49 Identities=24% Similarity=0.212 Sum_probs=40.3
Q ss_pred HHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhc
Q 024797 79 QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (262)
Q Consensus 79 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~ 128 (262)
.....+|+.|||.-||+|..+.... ....+++|+|++++-++.|++++.
T Consensus 203 ~~~S~~GD~VLDPF~GSGTT~~AA~-~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 203 LASSNPGDIVLDPFAGSFTTGAVAK-ASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHhCCCCCEEEECCCCCcHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHH
Confidence 3445799999999999997666543 445579999999999999999975
No 276
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.82 E-value=0.0034 Score=50.64 Aligned_cols=51 Identities=27% Similarity=0.423 Sum_probs=35.8
Q ss_pred HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHH
Q 024797 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125 (262)
Q Consensus 73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~ 125 (262)
++.++ .....+++.|||.-||+|..+.... ....+++|+|++++.++.|++
T Consensus 181 ~~~lI-~~~t~~gdiVlDpF~GSGTT~~aa~-~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 181 IERLI-KASTNPGDIVLDPFAGSGTTAVAAE-ELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHH-HHHS-TT-EEEETT-TTTHHHHHHH-HTT-EEEEEESSHHHHHHHHH
T ss_pred HHHHH-HhhhccceeeehhhhccChHHHHHH-HcCCeEEEEeCCHHHHHHhcC
Confidence 33343 3446789999999999997666554 444579999999999999874
No 277
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.68 E-value=0.02 Score=49.33 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=59.5
Q ss_pred cCCCeEEEecCCCCcchHHHHhc----------CCC-------eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeE
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA----------KIG-------YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR 145 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~----------~~~-------~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~ 145 (262)
...-+|+|+||..|..+..++.. ... .|+--|+-..=....-+.+........ .....-+.
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~--~~~~~f~~ 92 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLK--KFRNYFVS 92 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHH--HTTSEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccC--CCceEEEE
Confidence 34558999999999988765431 111 466667543322211111110000000 00001122
Q ss_pred EEeCcccccccccccCCCCCeeEEEEcccccccCC------C-----------------------------HHHHHHHHH
Q 024797 146 LICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS------T-----------------------------EARARRALA 190 (262)
Q Consensus 146 ~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~------~-----------------------------~~~~~~~l~ 190 (262)
-+-+.+..- ++|+++.|++++..++||+-. + ..|...+|+
T Consensus 93 gvpgSFy~r-----LfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~ 167 (334)
T PF03492_consen 93 GVPGSFYGR-----LFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLK 167 (334)
T ss_dssp EEES-TTS-------S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhc-----cCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 233444332 238999999999999988721 0 135567788
Q ss_pred HHHhccCCCcEEEEEeC
Q 024797 191 NVSALLRPGGTFIGTMP 207 (262)
Q Consensus 191 ~~~~~L~~gG~li~~~~ 207 (262)
.-.+=|+|||++++++.
T Consensus 168 ~Ra~ELv~GG~mvl~~~ 184 (334)
T PF03492_consen 168 ARAEELVPGGRMVLTFL 184 (334)
T ss_dssp HHHHHEEEEEEEEEEEE
T ss_pred HhhheeccCcEEEEEEe
Confidence 88888999999998864
No 278
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.66 E-value=0.0049 Score=51.68 Aligned_cols=72 Identities=22% Similarity=0.333 Sum_probs=54.5
Q ss_pred eEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCe
Q 024797 87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF 166 (262)
Q Consensus 87 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f 166 (262)
+++|+.||.|.+...+...+...+.++|+++.+++..+.++.. ..+++|+.++...+. .+.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~---------------~~~~~Di~~~~~~~~---~~~~ 63 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN---------------KLIEGDITKIDEKDF---IPDI 63 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC---------------CCccCccccCchhhc---CCCC
Confidence 6999999999998888666776789999999999998887651 256778777654211 3569
Q ss_pred eEEEEccccc
Q 024797 167 DICSCQFAMH 176 (262)
Q Consensus 167 D~V~~~~~l~ 176 (262)
|+++.....+
T Consensus 64 D~l~~gpPCq 73 (275)
T cd00315 64 DLLTGGFPCQ 73 (275)
T ss_pred CEEEeCCCCh
Confidence 9999876443
No 279
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.65 E-value=0.012 Score=48.21 Aligned_cols=115 Identities=15% Similarity=-0.057 Sum_probs=67.5
Q ss_pred CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (262)
..+||++|+|+|-.++.++......|+..|+..........+... + .....++..+.....+....+..... .+.
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~-~---~~l~~~g~~v~v~~L~Wg~~~~~~~~-~~~ 161 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKN-N---IALNQLGGSVIVAILVWGNALDVSFR-LPN 161 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhh-h---hhhhhcCCceeEEEEecCCcccHhhc-cCC
Confidence 457999999999666655555666888888866443333221110 0 00112222344444443332221111 122
Q ss_pred CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
.||+|++.-++.+- .....++..++..|..+|.+++..+-
T Consensus 162 ~~DlilasDvvy~~----~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 162 PFDLILASDVVYEE----ESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred cccEEEEeeeeecC----CcchhHHHHHHHHHhcCCeEEEEEec
Confidence 29999998887643 55677788888889899977666653
No 280
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.59 E-value=0.047 Score=45.37 Aligned_cols=114 Identities=14% Similarity=-0.003 Sum_probs=73.7
Q ss_pred CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc----
Q 024797 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL---- 160 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---- 160 (262)
...|+.+|||-=.-...+.......++=+|. +++++.-++.+.+.+. ....+..++.+|+. ..+...+
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~------~~~~~~~~v~~Dl~-~~w~~~L~~~g 153 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGA------EPPAHRRAVPVDLR-QDWPAALAAAG 153 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCC------CCCCceEEeccCch-hhHHHHHHhCC
Confidence 4579999998743333331112234666665 3355555555653221 12456788888886 2221111
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
+....--++++-+++.|+ +.+...++++.+.+...||+.+++...+
T Consensus 154 fd~~~ptl~i~EGvl~YL--~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 154 FDPTAPTAWLWEGLLMYL--TEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CCCCCCeeeeecchhhcC--CHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 123445688888899998 8889999999999999999999998654
No 281
>PHA01634 hypothetical protein
Probab=96.50 E-value=0.017 Score=41.87 Aligned_cols=45 Identities=7% Similarity=-0.000 Sum_probs=40.8
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhc
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~ 128 (262)
.+.+|+|||++-|..++.++..+.+.|++++.++...+..++...
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhh
Confidence 688999999999998888887888899999999999999988765
No 282
>PRK13699 putative methylase; Provisional
Probab=96.42 E-value=0.011 Score=48.12 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=39.3
Q ss_pred hccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhcc
Q 024797 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG 129 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~ 129 (262)
...+++.|||.-||+|..+....+ ...+++|+|++++..+.+.+++..
T Consensus 160 ~s~~g~~vlDpf~Gsgtt~~aa~~-~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 160 FTHPNAIVLDPFAGSGSTCVAALQ-SGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred hCCCCCEEEeCCCCCCHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHH
Confidence 356899999999999977665543 344799999999999999998763
No 283
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.41 E-value=0.0049 Score=53.79 Aligned_cols=61 Identities=18% Similarity=0.137 Sum_probs=47.7
Q ss_pred eEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797 87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (262)
Q Consensus 87 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 155 (262)
.|||+|.|+|.++...++.+...|++++.=..|++.|++...+ ++..+++.++..--.+..
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~k--------ng~SdkI~vInkrStev~ 129 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHK--------NGMSDKINVINKRSTEVK 129 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhc--------CCCccceeeeccccceee
Confidence 6999999999888877777777899999999999999998763 344566666665444443
No 284
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.27 Score=40.06 Aligned_cols=111 Identities=17% Similarity=0.194 Sum_probs=73.8
Q ss_pred CCCeEEEecCCCCcchHHHHhc-----CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797 84 RGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (262)
.+.+.+|+|+|+..-+..++.. ...+++.+|+|...++...+.+.. .-....+.-+++|.+. ++..
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~--------~y~~l~v~~l~~~~~~-~La~ 148 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILR--------EYPGLEVNALCGDYEL-ALAE 148 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHH--------hCCCCeEeehhhhHHH-HHhc
Confidence 4679999999998777766552 234799999999988876554431 1112335566777532 1111
Q ss_pred ccCCCCCeeE-EEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 159 VLADDAPFDI-CSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 159 ~~~~~~~fD~-V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
+ +...--+ ++...++-.+ ++.+...++..+...|+||-.+++.+.
T Consensus 149 ~--~~~~~Rl~~flGStlGN~--tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 149 L--PRGGRRLFVFLGSTLGNL--TPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred c--cCCCeEEEEEecccccCC--ChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 1 2222233 3334466666 788899999999999999999998764
No 285
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.36 E-value=0.072 Score=46.60 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=36.1
Q ss_pred CCCCCeeEEEEcccccccCCC----------------------------------HHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 161 ADDAPFDICSCQFAMHYSWST----------------------------------EARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~----------------------------------~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
+|.++.+++++..++||+-.- ..|...+|+.-++-|.|||.+++++
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 488999999999999887210 1235567777788899999999986
Q ss_pred C
Q 024797 207 P 207 (262)
Q Consensus 207 ~ 207 (262)
.
T Consensus 238 ~ 238 (386)
T PLN02668 238 L 238 (386)
T ss_pred e
Confidence 3
No 286
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.28 E-value=0.0044 Score=50.19 Aligned_cols=96 Identities=17% Similarity=0.126 Sum_probs=50.8
Q ss_pred HHHHhccCC--CeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797 77 LVQLYARRG--DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (262)
Q Consensus 77 l~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (262)
+.....+++ .+|||+-+|-|+.+..++..+. +|++++-|+-+....+..+.............-.+++++.+|..++
T Consensus 66 ~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~ 144 (234)
T PF04445_consen 66 AKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY 144 (234)
T ss_dssp HHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH
T ss_pred HHHhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH
Confidence 333334554 4899999999999988775544 7999999998777666544321100000001124689999998775
Q ss_pred ccccccCCCCCeeEEEEcccccc
Q 024797 155 HLDKVLADDAPFDICSCQFAMHY 177 (262)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~ 177 (262)
-. .++++||+|++.-.+.+
T Consensus 145 L~----~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 145 LR----QPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CC----CHSS--SEEEE--S---
T ss_pred Hh----hcCCCCCEEEECCCCCC
Confidence 32 15789999998765543
No 287
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.26 E-value=0.029 Score=43.85 Aligned_cols=111 Identities=19% Similarity=0.126 Sum_probs=62.7
Q ss_pred ccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHH----H--HHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSI----E--DCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~----~--~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 153 (262)
.+++.+|+|+=-|.|.++.-+.. ...+.|+++=..+... + ..+....+ ....|++.+-.+...
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e---------~~~aN~e~~~~~~~A 116 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE---------PVYANVEVIGKPLVA 116 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh---------hhhhhhhhhCCcccc
Confidence 47899999999999998887754 3555777764443211 0 00111110 112234444444443
Q ss_pred cccccccCCCCCeeEEEEccccccc---CCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 154 VHLDKVLADDAPFDICSCQFAMHYS---WSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~---~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
+. +....|++......|-+ .-......++...+++.|||||.+++..+
T Consensus 117 ~~------~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 117 LG------APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cC------CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 33 23444555442211111 00134568899999999999999988653
No 288
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.21 E-value=0.0026 Score=44.91 Aligned_cols=42 Identities=24% Similarity=0.418 Sum_probs=31.8
Q ss_pred CeeEEEEccccccc--CCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 165 PFDICSCQFAMHYS--WSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 165 ~fD~V~~~~~l~~~--~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
+||+|+|..+..++ --.++-...+++.+++.|+|||.||+.-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999998875433 1244567889999999999999999974
No 289
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.20 E-value=0.036 Score=44.53 Aligned_cols=86 Identities=14% Similarity=0.226 Sum_probs=51.4
Q ss_pred CCCeEEEecCCCCcchHHHHhcCC-CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
+..++||||.|.--.-..+-.+.. -+++|.|+++.+++.|+..+... .++...++.....-..--+....-.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N-------~~l~~~I~lr~qk~~~~if~giig~ 150 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISAN-------PGLERAIRLRRQKDSDAIFNGIIGK 150 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcC-------cchhhheeEEeccCccccccccccc
Confidence 456899999886422111111222 25899999999999999887521 1233345544332222112222224
Q ss_pred CCCeeEEEEccccc
Q 024797 163 DAPFDICSCQFAMH 176 (262)
Q Consensus 163 ~~~fD~V~~~~~l~ 176 (262)
.+.||.++|+--+|
T Consensus 151 nE~yd~tlCNPPFh 164 (292)
T COG3129 151 NERYDATLCNPPFH 164 (292)
T ss_pred cceeeeEecCCCcc
Confidence 68899999998887
No 290
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.20 E-value=0.0038 Score=47.10 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=35.4
Q ss_pred CCCeeEEEEcccccccC-------CCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 163 DAPFDICSCQFAMHYSW-------STEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~-------~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
.++||.+.|..+++|+- -++.--.+.+.++.++||+||.|++.+|
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 57899999999998871 1122235677899999999999999987
No 291
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.10 E-value=0.024 Score=48.61 Aligned_cols=107 Identities=19% Similarity=0.123 Sum_probs=76.5
Q ss_pred CCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
..+|||.-||+|.=++.++.. +..+++.-|+|+++++.++++... +.+.+...+..|+..+-.. ..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~---------N~~~~~~v~n~DAN~lm~~----~~ 119 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRL---------NSGEDAEVINKDANALLHE----LH 119 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHh---------cCcccceeecchHHHHHHh----cC
Confidence 679999999999888777653 343899999999999999998863 1133355555777665331 23
Q ss_pred CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (262)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~ 212 (262)
..||+|=+.- --.+.-++..+.+.++.||++.++..|...+
T Consensus 120 ~~fd~IDiDP--------FGSPaPFlDaA~~s~~~~G~l~vTATD~a~L 160 (380)
T COG1867 120 RAFDVIDIDP--------FGSPAPFLDAALRSVRRGGLLCVTATDTAPL 160 (380)
T ss_pred CCccEEecCC--------CCCCchHHHHHHHHhhcCCEEEEEecccccc
Confidence 7789885322 1234567888888889999999987655433
No 292
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.0036 Score=55.41 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=81.2
Q ss_pred CCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
++.+|||.=|++|.-++.++.. +...+++-|.++.+++..+++..- .+....++....|+..+-.....
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~--------N~v~~ive~~~~DA~~lM~~~~~- 179 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVEL--------NGVEDIVEPHHSDANVLMYEHPM- 179 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhh--------cCchhhcccccchHHHHHHhccc-
Confidence 5678999999999988888763 556799999999999998887762 22334466677776554332111
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~ 212 (262)
....||+|=+.- -.....+|+.+.+.++.||.|.++..|...+
T Consensus 180 ~~~~FDvIDLDP--------yGs~s~FLDsAvqav~~gGLL~vT~TD~aVL 222 (525)
T KOG1253|consen 180 VAKFFDVIDLDP--------YGSPSPFLDSAVQAVRDGGLLCVTCTDMAVL 222 (525)
T ss_pred cccccceEecCC--------CCCccHHHHHHHHHhhcCCEEEEEecchHhh
Confidence 347899985432 2334668899999999999999998766544
No 293
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.04 E-value=0.044 Score=47.65 Aligned_cols=98 Identities=19% Similarity=0.205 Sum_probs=62.4
Q ss_pred cCCCeEEEecCCC-CcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc-cccccc
Q 024797 83 RRGDVVLDLACGK-GGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLDKV 159 (262)
Q Consensus 83 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~ 159 (262)
.++.+|+-+|||+ |.++..+++ .+...|+.+|.+++-++.|++... .........+ ......
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g---------------~~~~~~~~~~~~~~~~~ 231 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG---------------ADVVVNPSEDDAGAEIL 231 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC---------------CeEeecCccccHHHHHH
Confidence 3455899999998 655555555 466789999999999999998654 1111111110 000000
Q ss_pred cCCC-CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 160 LADD-APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 160 ~~~~-~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
.... ..+|+++-.... ...+..+.+.+++||.+++.
T Consensus 232 ~~t~g~g~D~vie~~G~----------~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 232 ELTGGRGADVVIEAVGS----------PPALDQALEALRPGGTVVVV 268 (350)
T ss_pred HHhCCCCCCEEEECCCC----------HHHHHHHHHHhcCCCEEEEE
Confidence 0012 369999865542 23778899999999998654
No 294
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.01 E-value=0.036 Score=50.41 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=62.8
Q ss_pred cCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc--------
Q 024797 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-------- 153 (262)
Q Consensus 83 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-------- 153 (262)
.++.+|+-+|||. |......++.....|+++|.+++.++.+++.-. ++...|..+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA----------------~~v~i~~~e~~~~~~gy 226 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA----------------EFLELDFEEEGGSGDGY 226 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC----------------eEEEeccccccccccch
Confidence 3689999999997 555555555433479999999999999887322 211111100
Q ss_pred ---ccc------ccccCC-CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 154 ---VHL------DKVLAD-DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 154 ---~~~------~~~~~~-~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
+.- .....+ -..+|+|+....... ...+..+.++..+.+||||.++..
T Consensus 227 a~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg----~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 227 AKVMSEEFIKAEMALFAEQAKEVDIIITTALIPG----KPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred hhhcchhHHHHHHHHHHhccCCCCEEEECCCCCc----ccCcchHHHHHHHhcCCCCEEEEE
Confidence 000 000001 146899997665431 122333458999999999997654
No 295
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.85 E-value=0.052 Score=46.98 Aligned_cols=129 Identities=14% Similarity=0.092 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhcc--CccccccccCCCCCeE
Q 024797 69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNG--DADHHQRRKKFSFPAR 145 (262)
Q Consensus 69 ~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~~~~~~~v~ 145 (262)
.-+.+.++..++...+++...|+|+|-|......+. .+...-+|+++....-+.|...... ...++.- +-...+.
T Consensus 177 ~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fG--k~~~~~~ 254 (419)
T KOG3924|consen 177 QLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFG--KKPNKIE 254 (419)
T ss_pred hHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhC--CCcCcee
Confidence 334566777888889999999999999998887765 4555678888876655554432211 0000000 0023366
Q ss_pred EEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 146 LICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 146 ~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
.+++++........+ ....++|+++++.. +++. ..-+.++..-+++|-+++-.-
T Consensus 255 ~i~gsf~~~~~v~eI--~~eatvi~vNN~~F----dp~L-~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 255 TIHGSFLDPKRVTEI--QTEATVIFVNNVAF----DPEL-KLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred ecccccCCHHHHHHH--hhcceEEEEecccC----CHHH-HHhhHHHHhhCCCcceEeccc
Confidence 778877654432222 34568888887664 3333 333458999999999988653
No 296
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.74 E-value=0.023 Score=39.93 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCCh
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE 117 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~ 117 (262)
+....+|+|||+|-+.--|...+. .=.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence 456799999999955554433333 467888744
No 297
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.68 E-value=0.067 Score=47.10 Aligned_cols=109 Identities=23% Similarity=0.211 Sum_probs=65.7
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhcCC-CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc-cc--
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VH-- 155 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~-- 155 (262)
...++.+||..|||. |..+..+++... ..++++|.+++.++.+++... +.++...-.+ +.
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~---------------~~vi~~~~~~~~~~~ 245 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG---------------AETINFEEVDDVVEA 245 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC---------------cEEEcCCcchHHHHH
Confidence 345788999999987 777777766433 369999999999998887532 1111111110 00
Q ss_pred cccccCCCCCeeEEEEcccc-----------cccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 156 LDKVLADDAPFDICSCQFAM-----------HYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l-----------~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
..... ....+|+|+-.-.- .|.+....+....+.++.+.|+++|.++..
T Consensus 246 l~~~~-~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 246 LRELT-GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred HHHHc-CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 00011 23468988764311 111112233456788899999999998764
No 298
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.68 E-value=0.0079 Score=49.74 Aligned_cols=115 Identities=14% Similarity=0.023 Sum_probs=60.9
Q ss_pred ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccc-cccccCCCCCeEEEeCccccccccccc
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH-HQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
...+++|||+|||.|.........+...+...|.|.+.++.-.--....... .........-......+..+..+.
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~--- 190 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFN--- 190 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhh---
Confidence 4578999999999998888776666567889999887763211100000000 000000000011112211111110
Q ss_pred CCCC--CeeEEEEcccccccCCCHHHHHHH-HHHHHhccCCCcEEEE
Q 024797 161 ADDA--PFDICSCQFAMHYSWSTEARARRA-LANVSALLRPGGTFIG 204 (262)
Q Consensus 161 ~~~~--~fD~V~~~~~l~~~~~~~~~~~~~-l~~~~~~L~~gG~li~ 204 (262)
..+ .||+|.+.-.+... .....+ .......++++|.+++
T Consensus 191 -~t~~~~ydlIlsSetiy~~----~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 191 -HTERTHYDLILSSETIYSI----DSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred -hccccchhhhhhhhhhhCc----chhhhhHhhhhhhcCCccchhhh
Confidence 123 78888877766432 333444 6677778888998765
No 299
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.51 E-value=0.1 Score=44.11 Aligned_cols=101 Identities=18% Similarity=0.118 Sum_probs=62.9
Q ss_pred hccCCCeEEEecCCC-CcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc---ccccc
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD---CYEVH 155 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d---~~~~~ 155 (262)
..+.+.+||-+|+|+ |..+..+++ -+..+|+.+|+++.-++.|++ +.- .+...... ...+.
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga-------------~~~~~~~~~~~~~~~~ 231 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA-------------TVTDPSSHKSSPQELA 231 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC-------------eEEeeccccccHHHHH
Confidence 346899999999998 555555555 366789999999999999998 431 11111111 01100
Q ss_pred --cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 156 --LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 156 --~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
..... ....+|+.+-...++ ..++.....++.||.+++..
T Consensus 232 ~~v~~~~-g~~~~d~~~dCsG~~----------~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 232 ELVEKAL-GKKQPDVTFDCSGAE----------VTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred HHHHhhc-cccCCCeEEEccCch----------HHHHHHHHHhccCCEEEEec
Confidence 00111 234588887655443 34566678899999977654
No 300
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.42 E-value=0.09 Score=45.41 Aligned_cols=97 Identities=14% Similarity=0.092 Sum_probs=57.0
Q ss_pred ccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797 82 ARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (262)
Q Consensus 82 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (262)
..++++||-.|||. |..+..+++. +...++++|.+++.++.+++.-.. .-+.....++.+...
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~------------~vi~~~~~~~~~~~~--- 231 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD------------KLVNPQNDDLDHYKA--- 231 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc------------EEecCCcccHHHHhc---
Confidence 34688999999864 4455555554 344699999999999888763220 000000111111111
Q ss_pred cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
..+.+|+|+-...- ...+..+.+.|++||.++..
T Consensus 232 --~~g~~D~vid~~G~----------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 232 --EKGYFDVSFEVSGH----------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred --cCCCCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 22458988754321 13456778889999998764
No 301
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.38 E-value=0.081 Score=47.52 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=71.7
Q ss_pred CeEEEecCCCCcchHHHHhc-----CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 86 DVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 86 ~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
..|+-+|+|.|-+....++. ..-++++++-++.++-....+-- .....+|+++.+|+..+..
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~---------~~W~~~Vtii~~DMR~w~a---- 435 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF---------ECWDNRVTIISSDMRKWNA---- 435 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch---------hhhcCeeEEEeccccccCC----
Confidence 46888899999876655441 23368999999998877765321 2345679999999999873
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~ 204 (262)
+..+.|++++-. +..+ .+.+.-.+-|.-+.+.|||+|+.|=
T Consensus 436 -p~eq~DI~VSEL-LGSF-GDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 436 -PREQADIIVSEL-LGSF-GDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred -chhhccchHHHh-hccc-cCccCCHHHHHHHHhhcCCCceEcc
Confidence 357889987522 1111 1223445678899999999998763
No 302
>PRK11524 putative methyltransferase; Provisional
Probab=95.08 E-value=0.092 Score=44.26 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=39.7
Q ss_pred eEEEeCcccccccccccCCCCCeeEEEEccccc----c--c---CCC---HHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMH----Y--S---WST---EARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 144 v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~----~--~---~~~---~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
..++++|+.+..- . .++++||+|+++--.. + . +.. ..-...++.++.++|||||.+++...
T Consensus 9 ~~i~~gD~~~~l~--~-l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 9 KTIIHGDALTELK--K-IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CEEEeccHHHHHH--h-cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 5678899876421 0 1578999999854221 0 0 000 01235789999999999999988644
No 303
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.98 E-value=0.043 Score=44.01 Aligned_cols=102 Identities=19% Similarity=0.196 Sum_probs=66.8
Q ss_pred CCeEEEecCCCCcchHHHHhc-----C-----CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797 85 GDVVLDLACGKGGDLIKWDKA-----K-----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~-----~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (262)
-.+++|+.+.+|..+..+.+. . ...+++||+-+ | .+ ...|.-+++|+...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M-------aP------------I~GV~qlq~DIT~~ 101 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M-------AP------------IEGVIQLQGDITSA 101 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C-------Cc------------cCceEEeecccCCH
Confidence 468999999999988877552 1 11399999865 1 11 33477889998764
Q ss_pred ccccc---cCCCCCeeEEEEccc-----ccccCC---CHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 155 HLDKV---LADDAPFDICSCQFA-----MHYSWS---TEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 155 ~~~~~---~~~~~~fD~V~~~~~-----l~~~~~---~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
.-.+. .+...+.|+|+|.++ +|-+ + -.+.+..+|.-...+|+|||.++..+.
T Consensus 102 stae~Ii~hfggekAdlVvcDGAPDvTGlHd~-DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 102 STAEAIIEHFGGEKADLVVCDGAPDVTGLHDL-DEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred hHHHHHHHHhCCCCccEEEeCCCCCccccccH-HHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 32110 124568999999873 4432 0 112234556677889999999987653
No 304
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.95 E-value=0.018 Score=47.97 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=66.0
Q ss_pred CCCeEEEecCCCCcchH-HHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 84 RGDVVLDLACGKGGDLI-KWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~-~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
.+..|+|+-+|-|.++. ++...+.+.|+++|.++.+++..++.+.. ++..++...+.+|-.... +
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~--------N~V~~r~~i~~gd~R~~~------~ 259 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEA--------NNVMDRCRITEGDNRNPK------P 259 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHh--------cchHHHHHhhhccccccC------c
Confidence 56899999999999999 67677888899999999999999987762 222344455566654443 3
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcE
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT 201 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~ 201 (262)
....|-|.... + +..++-+..+-++|+|.|-
T Consensus 260 ~~~AdrVnLGL----l----PSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 260 RLRADRVNLGL----L----PSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred cccchheeecc----c----cccccchHHHHHHhhhcCC
Confidence 56667765432 1 2234455566777887544
No 305
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.14 Score=44.10 Aligned_cols=64 Identities=9% Similarity=0.026 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc---------CCCeEEEEeCChhHHHHHHHHhccC
Q 024797 67 KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA---------KIGYYVGIDIAEGSIEDCRTRYNGD 130 (262)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~ 130 (262)
..+..|+..++.+...+.+..++|+|.|.|.+...+++. ...++.-|++|++..+.-++.+...
T Consensus 60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 455667777777776666778999999999988877652 2457999999999999988888743
No 306
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.77 E-value=0.068 Score=44.18 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHh-ccCCCeEEEecCCCCcchHHHHhc---------CCCeEEEEeCChhHHHHHHHHhcc
Q 024797 70 NNWIKSVLVQLY-ARRGDVVLDLACGKGGDLIKWDKA---------KIGYYVGIDIAEGSIEDCRTRYNG 129 (262)
Q Consensus 70 ~~~~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~---------~~~~v~gvD~s~~~~~~a~~~~~~ 129 (262)
..|+...+.... +..+.+|+|+|+|+|.++..++.. ...+++.||+|+.+.+..++++..
T Consensus 3 a~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 3 ARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred HHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 345555555553 223469999999999998877652 124799999999999999998874
No 307
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=94.39 E-value=0.18 Score=44.78 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=65.8
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC-ccc--ccccc
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCY--EVHLD 157 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~--~~~~~ 157 (262)
..+.++|+|.|.|.-.-.+.. .....++.||.|..|.......... +.. ...+ ++.. -+. .+|.
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~-------~g~~-~v~~~~~~r~~~pi- 269 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSH-------IGEP-IVRKLVFHRQRLPI- 269 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhh-------cCch-hccccchhcccCCC-
Confidence 456899999987753322211 2344699999999999998877652 000 0000 1111 011 1111
Q ss_pred cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHH-hccCCCcEEEEEeC
Q 024797 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVS-ALLRPGGTFIGTMP 207 (262)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~-~~L~~gG~li~~~~ 207 (262)
...+.||+|++.+.++++.... .+..+.+..+ +..++||.+++.-.
T Consensus 270 ---~~~~~yDlvi~ah~l~~~~s~~-~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 270 ---DIKNGYDLVICAHKLHELGSKF-SRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred ---CcccceeeEEeeeeeeccCCch-hhhhhhHHHHHhccCCCceEEEEec
Confidence 1346699999999999874444 5555666654 45578888877643
No 308
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.36 E-value=0.11 Score=47.21 Aligned_cols=100 Identities=14% Similarity=0.097 Sum_probs=59.1
Q ss_pred CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc---------
Q 024797 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE--------- 153 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~--------- 153 (262)
++.+||-+|||. |.....+++.....|+.+|.++..++.++. +. .+++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lG---------------a~~v~v~~~e~g~~~~gYa 226 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MG---------------AEFLELDFKEEGGSGDGYA 226 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC---------------CeEEeccccccccccccce
Confidence 568999999997 555555555444469999999998887776 32 1221211100
Q ss_pred --c--ccc-----cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797 154 --V--HLD-----KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (262)
Q Consensus 154 --~--~~~-----~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li 203 (262)
+ ++. .....-..+|+|+....+.- .+.+.-+.++..+.+|||+.++
T Consensus 227 ~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG----~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 227 KVMSEEFIAAEMELFAAQAKEVDIIITTALIPG----KPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred eecCHHHHHHHHHHHHHHhCCCCEEEECcccCC----CCCCeeehHHHHhhCCCCCEEE
Confidence 0 000 00001256899986654432 1233446677888999998866
No 309
>PRK13699 putative methylase; Provisional
Probab=94.31 E-value=0.22 Score=40.52 Aligned_cols=82 Identities=13% Similarity=0.260 Sum_probs=48.2
Q ss_pred eEEEeCccccc--ccccccCCCCCeeEEEEccccc----ccCC-------CHHHHHHHHHHHHhccCCCcEEEEEeC-C-
Q 024797 144 ARLICGDCYEV--HLDKVLADDAPFDICSCQFAMH----YSWS-------TEARARRALANVSALLRPGGTFIGTMP-D- 208 (262)
Q Consensus 144 v~~~~~d~~~~--~~~~~~~~~~~fD~V~~~~~l~----~~~~-------~~~~~~~~l~~~~~~L~~gG~li~~~~-~- 208 (262)
++++++|+.+. .+ +++++|+|+..--.. .... ..+-...++.++.|+|||||.+++... +
T Consensus 2 ~~l~~gD~le~l~~l-----pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~ 76 (227)
T PRK13699 2 SRFILGNCIDVMARF-----PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNR 76 (227)
T ss_pred CeEEechHHHHHHhC-----CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecccc
Confidence 35678887654 23 688899999863221 0000 012346789999999999999876433 2
Q ss_pred hHHHHHHHhhhcCCccccceEEE
Q 024797 209 ANVIIKKLREVEGLAIGNSVYWI 231 (262)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~ 231 (262)
...+...+ ...++.+.+.+.|.
T Consensus 77 ~~~~~~al-~~~GF~l~~~IiW~ 98 (227)
T PRK13699 77 VDRFMAAW-KNAGFSVVGHLVFT 98 (227)
T ss_pred HHHHHHHH-HHCCCEEeeEEEEE
Confidence 23333333 33455555555555
No 310
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.26 E-value=0.48 Score=33.74 Aligned_cols=95 Identities=17% Similarity=0.074 Sum_probs=60.7
Q ss_pred CCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEE
Q 024797 93 CGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDIC 169 (262)
Q Consensus 93 cG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V 169 (262)
||.|.++..+++ .....|+.+|.+++.++.+++.. +.++.+|..+....... .-...+.|
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~----------------~~~i~gd~~~~~~l~~a-~i~~a~~v 66 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG----------------VEVIYGDATDPEVLERA-GIEKADAV 66 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT----------------SEEEES-TTSHHHHHHT-TGGCESEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc----------------cccccccchhhhHHhhc-CccccCEE
Confidence 455666666654 33337999999999988887642 66889998765432111 22567877
Q ss_pred EEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797 170 SCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV 211 (262)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~ 211 (262)
++... .+.....+....+.+.|...+++.+.+.+.
T Consensus 67 v~~~~-------~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~ 101 (116)
T PF02254_consen 67 VILTD-------DDEENLLIALLARELNPDIRIIARVNDPEN 101 (116)
T ss_dssp EEESS-------SHHHHHHHHHHHHHHTTTSEEEEEESSHHH
T ss_pred EEccC-------CHHHHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence 76442 133444555566777888899988887754
No 311
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=94.22 E-value=0.47 Score=37.17 Aligned_cols=108 Identities=13% Similarity=0.141 Sum_probs=73.3
Q ss_pred cCCCeEEEecCCCCcchHHHHhc-----CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (262)
.++..|+|+|.-.|..+..++.. ...+|+++|++-..++-+.... ..+.|+.++-.+....
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~--------------p~i~f~egss~dpai~ 133 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV--------------PDILFIEGSSTDPAIA 133 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC--------------CCeEEEeCCCCCHHHH
Confidence 36778999999999877776541 2247999999876655544332 2489999987664321
Q ss_pred cc--cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 158 KV--LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 158 ~~--~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
.. ....+.--+.+|..+-|++ +...+.|+.+..+|..|-++++...+
T Consensus 134 eqi~~~~~~y~kIfvilDsdHs~----~hvLAel~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 134 EQIRRLKNEYPKIFVILDSDHSM----EHVLAELKLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred HHHHHHhcCCCcEEEEecCCchH----HHHHHHHHHhhhHhhcCceEEEeccc
Confidence 10 0022333455556667765 77788888899999999999987543
No 312
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.14 E-value=1 Score=38.22 Aligned_cols=114 Identities=20% Similarity=0.148 Sum_probs=77.8
Q ss_pred CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC---
Q 024797 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA--- 161 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--- 161 (262)
-..|+-+|||-=.-.-.+-....-.|+-+|. |+.++.=++.+.+.+. ..+..++++..|+.+..+...+.
T Consensus 93 ~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~------~~~~~~~~Va~Dl~~~dw~~~L~~~G 165 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGA------TPPAHRRLVAVDLREDDWPQALAAAG 165 (297)
T ss_pred ccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCC------CCCceEEEEeccccccchHHHHHhcC
Confidence 4689999998632222221112235778887 5566666666664321 12335889999998555433221
Q ss_pred -CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 162 -DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 162 -~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
....--++++-+++.|+ +++...++|..+...+.||-.+++...
T Consensus 166 ~d~~~pt~~iaEGLl~YL--~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 166 FDRSRPTLWIAEGLLMYL--PEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCcCCCeEEEeccccccC--CHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 24455788888999999 888999999999999999999888765
No 313
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.14 E-value=0.29 Score=41.88 Aligned_cols=68 Identities=19% Similarity=0.318 Sum_probs=50.1
Q ss_pred EEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCee
Q 024797 88 VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFD 167 (262)
Q Consensus 88 vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 167 (262)
|+|+.||.|.+..-+...+...+.++|+++.+++..+.++.. .+.++|+.++...+ -..+|
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~---------------~~~~~Di~~~~~~~----~~~~d 61 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN---------------KVPFGDITKISPSD----IPDFD 61 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC---------------CCCccChhhhhhhh----CCCcC
Confidence 689999999999888666766688999999999988887651 34567777665321 23579
Q ss_pred EEEEccc
Q 024797 168 ICSCQFA 174 (262)
Q Consensus 168 ~V~~~~~ 174 (262)
+++...-
T Consensus 62 vl~gg~P 68 (315)
T TIGR00675 62 ILLGGFP 68 (315)
T ss_pred EEEecCC
Confidence 9987653
No 314
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=93.90 E-value=0.63 Score=40.87 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=71.1
Q ss_pred HHHHHHhccCCCeEEEecCCCCcchHHHHh----c----CCCeEEEEeC----ChhHHHHHHHHhccCccccccccCCCC
Q 024797 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDK----A----KIGYYVGIDI----AEGSIEDCRTRYNGDADHHQRRKKFSF 142 (262)
Q Consensus 75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~----~----~~~~v~gvD~----s~~~~~~a~~~~~~~~~~~~~~~~~~~ 142 (262)
.+++.....+.-+|+|+|.|.|.-...+++ . +.-++|||+. +...++.+.+++.+.. ..++.
T Consensus 101 aIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA------~~lgv 174 (374)
T PF03514_consen 101 AILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFA------RSLGV 174 (374)
T ss_pred HHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHH------HHcCc
Confidence 345555555667999999999986666554 1 2226999999 7778888877765321 12222
Q ss_pred CeEEEe---CcccccccccccCCCCCeeEEEEcccccccCCC---HHHHHHHHHHHHhccCCCcEEEEE
Q 024797 143 PARLIC---GDCYEVHLDKVLADDAPFDICSCQFAMHYSWST---EARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 143 ~v~~~~---~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~---~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
..+|.. .++.++....+...++..=+|-+.+.+||+... .+++...+-...+.|+|.-++++.
T Consensus 175 ~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 175 PFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred cEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 233333 233333222221133444455566677887421 122344455566688998666654
No 315
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.57 E-value=1.3 Score=36.43 Aligned_cols=109 Identities=18% Similarity=0.151 Sum_probs=59.4
Q ss_pred CCCeEEEecCCCCcchHHHH---hc---CCCeEEEEeCChh--------------------------HHHHHHHHhccCc
Q 024797 84 RGDVVLDLACGKGGDLIKWD---KA---KIGYYVGIDIAEG--------------------------SIEDCRTRYNGDA 131 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~---~~---~~~~v~gvD~s~~--------------------------~~~~a~~~~~~~~ 131 (262)
-+..|+|+||-.|..+..+. +. ...++++.|.=+. .++..++++...+
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 34579999999997655432 21 2345888774221 2223333332111
Q ss_pred cccccccCCCCCeEEEeCcccc-cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797 132 DHHQRRKKFSFPARLICGDCYE-VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 132 ~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 209 (262)
....++.++.|.+.+ ++- .+..++-++.+..-+. +.-...|..++..|.|||++++...+.
T Consensus 154 -------l~~~~v~~vkG~F~dTLp~----~p~~~IAll~lD~DlY------esT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 154 -------LLDDNVRFVKGWFPDTLPD----APIERIALLHLDCDLY------ESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp -------TSSTTEEEEES-HHHHCCC-----TT--EEEEEE---SH------HHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred -------CCcccEEEECCcchhhhcc----CCCccEEEEEEeccch------HHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 123579999998744 221 1334555555444332 567889999999999999999987665
No 316
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=93.44 E-value=1.5 Score=40.23 Aligned_cols=68 Identities=21% Similarity=0.357 Sum_probs=43.8
Q ss_pred cCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-----CCCeEEEEeCChhHHHHHHHHhc
Q 024797 60 ASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYN 128 (262)
Q Consensus 60 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~~~~a~~~~~ 128 (262)
.+..+.++.+...+..++... ..++..|.|..||+|.++...... ....++|.+....+...++.++.
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~-~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~ 266 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGK-KDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMI 266 (501)
T ss_pred CceeeCcHHHHHHHHHHhccC-CCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHH
Confidence 344445555544433332211 125578999999999988754331 12358999999999999988753
No 317
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.28 E-value=0.73 Score=39.26 Aligned_cols=98 Identities=19% Similarity=0.276 Sum_probs=58.9
Q ss_pred ccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc-c
Q 024797 82 ARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK-V 159 (262)
Q Consensus 82 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~ 159 (262)
..++.+||..|+|. |..+..+++....++++++.+++..+.+++. . +..+..+-....... .
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~-g---------------~~~~~~~~~~~~~~~~~ 226 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL-G---------------ADEVLNSLDDSPKDKKA 226 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh-C---------------CCEEEcCCCcCHHHHHH
Confidence 45778899988763 6666666665555799999999888887552 1 111111110000000 0
Q ss_pred cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
......+|+|+..... ...+.++.+.|+++|.++..
T Consensus 227 ~~~~~~~D~vid~~g~----------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 227 AGLGGGFDVIFDFVGT----------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HhcCCCceEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 0134578988743221 23567788999999998864
No 318
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.06 E-value=0.16 Score=43.41 Aligned_cols=69 Identities=22% Similarity=0.364 Sum_probs=50.7
Q ss_pred eEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCe
Q 024797 87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF 166 (262)
Q Consensus 87 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f 166 (262)
+++|+-||.|.+...+...+...+.++|+++.+++.-+.++. ....+|+..+....+ +. .+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~----------------~~~~~Di~~~~~~~l--~~-~~ 62 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP----------------EVICGDITEIDPSDL--PK-DV 62 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT----------------EEEESHGGGCHHHHH--HH-T-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc----------------ccccccccccccccc--cc-cc
Confidence 689999999999988877777679999999999888887753 567888877764311 22 59
Q ss_pred eEEEEccc
Q 024797 167 DICSCQFA 174 (262)
Q Consensus 167 D~V~~~~~ 174 (262)
|+++...-
T Consensus 63 D~l~ggpP 70 (335)
T PF00145_consen 63 DLLIGGPP 70 (335)
T ss_dssp SEEEEE--
T ss_pred eEEEeccC
Confidence 99997653
No 319
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=93.03 E-value=0.59 Score=36.57 Aligned_cols=100 Identities=14% Similarity=0.114 Sum_probs=57.4
Q ss_pred CCC-eEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc-
Q 024797 84 RGD-VVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL- 160 (262)
Q Consensus 84 ~~~-~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~- 160 (262)
++. .|+.+|||-=.....+... +...++-+|+ +++++.-++.+.+.+... ..+.+++.+|+.+..+...+
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~------~~~~~~v~~Dl~~~~~~~~L~ 149 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARP------PANYRYVPADLRDDSWIDALP 149 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHH------HEESSEEES-TTSHHHHHHHH
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccC------CcceeEEeccccchhhHHHHH
Confidence 444 8999999975444444332 2446788887 446666666655321110 12356789998864432211
Q ss_pred ---CCCCCeeEEEEcccccccCCCHHHHHHHHHHH
Q 024797 161 ---ADDAPFDICSCQFAMHYSWSTEARARRALANV 192 (262)
Q Consensus 161 ---~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~ 192 (262)
+..+.--++++-+++.|+ +.+....+++.+
T Consensus 150 ~~g~~~~~ptl~i~Egvl~Yl--~~~~~~~ll~~i 182 (183)
T PF04072_consen 150 KAGFDPDRPTLFIAEGVLMYL--SPEQVDALLRAI 182 (183)
T ss_dssp HCTT-TTSEEEEEEESSGGGS---HHHHHHHHHHH
T ss_pred HhCCCCCCCeEEEEcchhhcC--CHHHHHHHHHHh
Confidence 134566788888999999 777777777765
No 320
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=92.88 E-value=0.47 Score=40.14 Aligned_cols=120 Identities=16% Similarity=0.203 Sum_probs=75.4
Q ss_pred CeEEEecCCCCcchHHHHhcC------------C---------CeEEEEeCCh--hHHHHHHHHhccCcccc--------
Q 024797 86 DVVLDLACGKGGDLIKWDKAK------------I---------GYYVGIDIAE--GSIEDCRTRYNGDADHH-------- 134 (262)
Q Consensus 86 ~~vLDiGcG~G~~~~~l~~~~------------~---------~~v~gvD~s~--~~~~~a~~~~~~~~~~~-------- 134 (262)
.+||-||.|.|.-+..++..- . ..++.||+.+ ..++.....+....+..
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 599999999988666554310 1 2688999874 34444444443220000
Q ss_pred ccccCCCCCeEEEeCcccccccccc--cCCCCCeeEEEEcccccccC-CCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 135 QRRKKFSFPARLICGDCYEVHLDKV--LADDAPFDICSCQFAMHYSW-STEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 135 ~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~fD~V~~~~~l~~~~-~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
........++.|.+.|+..+....+ .......++|...++++-++ .+...-.++|..+...++||..|+|.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 0011223568999999987765321 11223578888888776443 23456688999999999999998764
No 321
>PTZ00357 methyltransferase; Provisional
Probab=92.83 E-value=0.49 Score=44.27 Aligned_cols=110 Identities=16% Similarity=0.117 Sum_probs=62.5
Q ss_pred eEEEecCCCCcchHHHHhc----C-CCeEEEEeCChhHHHHHHHHhc-cCccccccccCCCCCeEEEeCccccccccc--
Q 024797 87 VVLDLACGKGGDLIKWDKA----K-IGYYVGIDIAEGSIEDCRTRYN-GDADHHQRRKKFSFPARLICGDCYEVHLDK-- 158 (262)
Q Consensus 87 ~vLDiGcG~G~~~~~l~~~----~-~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-- 158 (262)
.|+-+|+|.|-+....++. + .-++++|+-++..+.....+.. .....+ ...-.+..|+++..|+..+....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n-~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQ-LAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhccccccc-ccccCCCeEEEEeCccccccccccc
Confidence 5899999999887765542 2 2269999999765544444321 000100 00011345999999999875421
Q ss_pred --c--cCCCCCeeEEEE--cccccccCCCHHHHHHHHHHHHhccCC----CcE
Q 024797 159 --V--LADDAPFDICSC--QFAMHYSWSTEARARRALANVSALLRP----GGT 201 (262)
Q Consensus 159 --~--~~~~~~fD~V~~--~~~l~~~~~~~~~~~~~l~~~~~~L~~----gG~ 201 (262)
. ...-+++|+||+ .+.+- +.+.-.+-|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFG----DNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLG----DNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccc----cccCCHHHHHHHHHhhhhhcccccc
Confidence 0 001147999986 22221 223334556666666665 675
No 322
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.83 E-value=0.61 Score=40.27 Aligned_cols=92 Identities=14% Similarity=0.062 Sum_probs=55.5
Q ss_pred ccCCCeEEEecCCC-CcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797 82 ARRGDVVLDLACGK-GGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (262)
Q Consensus 82 ~~~~~~vLDiGcG~-G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (262)
..++++||-+|||. |..+..+++. +..+++++|.+++-++.+++ +. ... ..+ ++.
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~---------------~~~-~~~--~~~--- 218 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD---------------ETY-LID--DIP--- 218 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC---------------cee-ehh--hhh---
Confidence 35789999999875 4444444443 34579999999888877764 22 111 001 111
Q ss_pred ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
....+|+|+-.-.-. .....+....+.|++||++++.
T Consensus 219 ---~~~g~d~viD~~G~~-------~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 219 ---EDLAVDHAFECVGGR-------GSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred ---hccCCcEEEECCCCC-------ccHHHHHHHHHhCcCCcEEEEE
Confidence 122478887433210 0134677788999999998753
No 323
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.59 E-value=0.38 Score=41.63 Aligned_cols=42 Identities=17% Similarity=0.042 Sum_probs=33.7
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHH
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~ 125 (262)
+-..|+|+|.|.|.++..+.-...-.|.+||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 556899999999988887755545579999999877777764
No 324
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.24 E-value=0.89 Score=38.01 Aligned_cols=98 Identities=16% Similarity=0.045 Sum_probs=55.1
Q ss_pred ccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797 82 ARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (262)
Q Consensus 82 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (262)
..++.+||-+|+|+ |..+..+++. +...++++|.+++-++.+++.-.. .++..+-........
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~---------------~~i~~~~~~~~~~~~ 182 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT---------------ALAEPEVLAERQGGL 182 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc---------------EecCchhhHHHHHHH
Confidence 34788999998864 4444455553 333588999998888777663210 011100000000000
Q ss_pred cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
. ....+|+|+-...- ...+..+.+.|+++|.++..
T Consensus 183 ~-~~~g~d~vid~~G~----------~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 183 Q-NGRGVDVALEFSGA----------TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred h-CCCCCCEEEECCCC----------hHHHHHHHHHhcCCCEEEEe
Confidence 0 23458988743211 23566778899999998753
No 325
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.22 E-value=1.9 Score=37.04 Aligned_cols=91 Identities=10% Similarity=-0.045 Sum_probs=55.3
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (262)
...++.+||-.|+|. |..+..+++....++++++.+++-++.+++.-.. .++ +..+.
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~---------------~vi--~~~~~----- 219 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAA---------------SAG--GAYDT----- 219 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCc---------------eec--ccccc-----
Confidence 456788999999864 4344445554444699999999888887764220 111 11111
Q ss_pred cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
..+.+|+++..-.. ...+....+.|++||++++.
T Consensus 220 --~~~~~d~~i~~~~~----------~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 220 --PPEPLDAAILFAPA----------GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred --CcccceEEEECCCc----------HHHHHHHHHhhCCCcEEEEE
Confidence 12357876532211 13577788999999998763
No 326
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=92.06 E-value=0.69 Score=43.90 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=63.7
Q ss_pred CCCeEEEecCCCCcchHHHHhc--------C-----CCeEEEEeCCh---hHHHHHHHHhccC----------------c
Q 024797 84 RGDVVLDLACGKGGDLIKWDKA--------K-----IGYYVGIDIAE---GSIEDCRTRYNGD----------------A 131 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~--------~-----~~~v~gvD~s~---~~~~~a~~~~~~~----------------~ 131 (262)
+.-+|||+|-|+|......++. + .-+++++|..+ +.+..+.+.+.+. +
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 4468999999999865544321 1 12588999643 3333333222110 0
Q ss_pred cccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHH-HHHHHHHHHhccCCCcEEEEE
Q 024797 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR-ARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 132 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~-~~~~l~~~~~~L~~gG~li~~ 205 (262)
.....-......+++..+|+.+.-- . -...||+++....--.- +++. -..++..+.+.++|||.++-.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~-~---~~~~~d~~~lD~FsP~~--np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLP-Q---LDARADAWFLDGFAPAK--NPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHH-h---ccccccEEEeCCCCCcc--ChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 0000000111245567778754311 0 13569999987632211 1121 267899999999999988744
No 327
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=92.00 E-value=0.38 Score=42.20 Aligned_cols=60 Identities=15% Similarity=0.126 Sum_probs=50.9
Q ss_pred CCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 142 ~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
.+++++++++.+..-. .+++++|.++....+.++ +++...+.++++.+.++|||+++.-.
T Consensus 275 drv~i~t~si~~~L~~---~~~~s~~~~vL~D~~Dwm--~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRR---LPPGSFDRFVLSDHMDWM--DPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHHHHHh---CCCCCeeEEEecchhhhC--CHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 6789999998765321 157999999999999999 88999999999999999999999854
No 328
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.71 E-value=1.1 Score=39.14 Aligned_cols=98 Identities=17% Similarity=0.127 Sum_probs=55.9
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--c
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L 156 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~ 156 (262)
...++.+||=.|+|. |..+..+++. +...|+++|.+++-++.+++.-. ..++...-.++. .
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga---------------~~~i~~~~~~~~~~i 252 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA---------------TATVNAGDPNAVEQV 252 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC---------------ceEeCCCchhHHHHH
Confidence 346788999999764 4444555553 33369999999998888865321 111111101100 0
Q ss_pred ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
... ..+.+|+|+-...- ...+....+.|+++|.++..
T Consensus 253 ~~~--~~~g~d~vid~~G~----------~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 253 REL--TGGGVDYAFEMAGS----------VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred HHH--hCCCCCEEEECCCC----------hHHHHHHHHHHhcCCEEEEE
Confidence 001 12368988743211 13456677889999998753
No 329
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=91.47 E-value=1.6 Score=35.60 Aligned_cols=98 Identities=22% Similarity=0.213 Sum_probs=57.4
Q ss_pred cCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 83 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
.++.+||..|+|+ |..+..+++....++++++.+++..+.+++... ..++...-......-...
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~---------------~~~~~~~~~~~~~~~~~~ 197 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA---------------DHVIDYKEEDLEEELRLT 197 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC---------------ceeccCCcCCHHHHHHHh
Confidence 5788999999986 555555655555689999999887777754321 001100000000000001
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
....+|+|+....- . ..+..+.+.|+++|.++..
T Consensus 198 ~~~~~d~vi~~~~~-------~---~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 198 GGGGADVVIDAVGG-------P---ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred cCCCCCEEEECCCC-------H---HHHHHHHHhcccCCEEEEE
Confidence 24579999854321 0 3456677888999998764
No 330
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=91.41 E-value=0.39 Score=44.13 Aligned_cols=104 Identities=27% Similarity=0.345 Sum_probs=62.5
Q ss_pred ccCCCeEEEecCCCCcchHHHHhc-CCC-eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc----c
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKA-KIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV----H 155 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~----~ 155 (262)
+.++..|||+||.+|..+....+. +.+ -|+|+|+-+- ....++..++.|+..- +
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi--------------------kp~~~c~t~v~dIttd~cr~~ 101 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI--------------------KPIPNCDTLVEDITTDECRSK 101 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec--------------------ccCCccchhhhhhhHHHHHHH
Confidence 467889999999999988766552 333 5999999761 1134455566665432 2
Q ss_pred cccccCCCCCeeEEEEccccccc--CC-----CHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 156 LDKVLADDAPFDICSCQFAMHYS--WS-----TEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~--~~-----~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
+...+ ...+.|+|+..++-.-- |. ....-...++-+...|+.||.++-.+
T Consensus 102 l~k~l-~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkv 158 (780)
T KOG1098|consen 102 LRKIL-KTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKV 158 (780)
T ss_pred HHHHH-HhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccc
Confidence 21111 34556999876532211 00 01112345666778899999976544
No 331
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=91.31 E-value=0.66 Score=39.96 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=55.6
Q ss_pred CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (262)
..+++|+-||.|.+..-+...+...+.++|+++.+++.-+.+... ..++..|+......... ..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~--------------~~~~~~di~~~~~~~~~--~~ 66 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH--------------GDIILGDIKELDGEALR--KS 66 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC--------------CceeechHhhcChhhcc--cc
Confidence 357999999999998888666776799999999999998887651 44566777655432111 11
Q ss_pred CeeEEEEcccccc
Q 024797 165 PFDICSCQFAMHY 177 (262)
Q Consensus 165 ~fD~V~~~~~l~~ 177 (262)
.+|+++...-.+.
T Consensus 67 ~~DvligGpPCQ~ 79 (328)
T COG0270 67 DVDVLIGGPPCQD 79 (328)
T ss_pred CCCEEEeCCCCcc
Confidence 7899997664443
No 332
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.08 E-value=0.61 Score=33.84 Aligned_cols=85 Identities=19% Similarity=0.152 Sum_probs=53.4
Q ss_pred CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--cccccCCCCCeeEEEEcc
Q 024797 96 GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDKVLADDAPFDICSCQF 173 (262)
Q Consensus 96 G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~fD~V~~~~ 173 (262)
|..+..+++....+++++|.++.-++.+++.-. -.++..+-.++. .... .....+|+|+-.-
T Consensus 3 G~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga---------------~~~~~~~~~~~~~~i~~~-~~~~~~d~vid~~ 66 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDRSEEKLELAKELGA---------------DHVIDYSDDDFVEQIREL-TGGRGVDVVIDCV 66 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTE---------------SEEEETTTSSHHHHHHHH-TTTSSEEEEEESS
T ss_pred HHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcc---------------cccccccccccccccccc-cccccceEEEEec
Confidence 556666766544789999999999999887532 122222211110 1111 1335799998543
Q ss_pred cccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 174 AMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
.- ...+.....+|+++|.+++.-
T Consensus 67 g~----------~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 67 GS----------GDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp SS----------HHHHHHHHHHEEEEEEEEEES
T ss_pred Cc----------HHHHHHHHHHhccCCEEEEEE
Confidence 31 346788889999999998753
No 333
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.04 E-value=0.91 Score=40.34 Aligned_cols=86 Identities=9% Similarity=0.034 Sum_probs=53.8
Q ss_pred CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
++++|+-+|||. |......++....+|+.+|.++.-+..|++.- .... +..+.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G----------------~~~~--~~~e~-------- 254 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG----------------YEVM--TMEEA-------- 254 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC----------------CEEc--cHHHH--------
Confidence 688999999997 65555555543347999999988777776521 1111 11111
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHH-HHhccCCCcEEEEE
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALAN-VSALLRPGGTFIGT 205 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~-~~~~L~~gG~li~~ 205 (262)
-...|+|+..-.. ..++.. ..+.+++||+++..
T Consensus 255 v~~aDVVI~atG~----------~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 255 VKEGDIFVTTTGN----------KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred HcCCCEEEECCCC----------HHHHHHHHHhcCCCCcEEEEe
Confidence 1346999864322 123443 57899999998654
No 334
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.89 E-value=1.2 Score=38.48 Aligned_cols=94 Identities=12% Similarity=-0.011 Sum_probs=54.4
Q ss_pred cCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeC---ChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDI---AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (262)
Q Consensus 83 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~---s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (262)
.++.+||-+|+|. |.++..+++....++++++. ++.-++.+++.-. ..+ +..+.....
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga----------------~~v--~~~~~~~~~ 232 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGA----------------TYV--NSSKTPVAE 232 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC----------------EEe--cCCccchhh
Confidence 4788999999875 55555566544347999986 5666666654211 111 111100000
Q ss_pred ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
. ...+.+|+|+-...- ...+....+.|++||.+++.
T Consensus 233 ~-~~~~~~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 233 V-KLVGEFDLIIEATGV----------PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred h-hhcCCCCEEEECcCC----------HHHHHHHHHHccCCcEEEEE
Confidence 0 012468988754321 12567788999999998653
No 335
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.67 E-value=0.93 Score=38.38 Aligned_cols=98 Identities=9% Similarity=0.063 Sum_probs=69.4
Q ss_pred CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
++.+|.-+|.|. |.....++......|+-+|+|.+-+.+....+. .++........++.. .
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-------------~rv~~~~st~~~iee-----~ 228 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-------------GRVHTLYSTPSNIEE-----A 228 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-------------ceeEEEEcCHHHHHH-----H
Confidence 446788888885 767777766666689999999888877776654 235666555544432 2
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li 203 (262)
-.+.|+|+..-.+- ....+.-+.+++.+.+|||+.++
T Consensus 229 v~~aDlvIgaVLIp----gakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 229 VKKADLVIGAVLIP----GAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred hhhccEEEEEEEec----CCCCceehhHHHHHhcCCCcEEE
Confidence 35789988544332 34567788899999999999886
No 336
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=90.46 E-value=2 Score=36.83 Aligned_cols=100 Identities=17% Similarity=0.124 Sum_probs=55.2
Q ss_pred HhccCCCeEEEecCCC-CcchHHHHhcCCCe-EEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-cc
Q 024797 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HL 156 (262)
Q Consensus 80 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~ 156 (262)
....++.+||=.|+|. |..+..+++....+ ++++|.+++..+.+++.-. -.++...-.+. ..
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga---------------~~~i~~~~~~~~~~ 223 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA---------------DFVINSGQDDVQEI 223 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC---------------CEEEcCCcchHHHH
Confidence 3446788999998764 43444455543334 9999999988887765321 01111110000 00
Q ss_pred ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
.... ....+|+|+-...- ...+....+.|+++|.+++.
T Consensus 224 ~~~~-~~~~~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 224 RELT-SGAGADVAIECSGN----------TAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred HHHh-CCCCCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 0000 23468999743221 12345667889999998753
No 337
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.39 E-value=2.4 Score=39.38 Aligned_cols=101 Identities=13% Similarity=0.047 Sum_probs=60.1
Q ss_pred CeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797 86 DVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (262)
Q Consensus 86 ~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (262)
.+|+=+|||. |+.....+......++.+|.+++.++.+++ .. ...+.+|+.+....... .-+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-~g---------------~~~i~GD~~~~~~L~~a-~i~ 480 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-RG---------------IRAVLGNAANEEIMQLA-HLD 480 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-CC---------------CeEEEcCCCCHHHHHhc-Ccc
Confidence 5788888876 444333333344479999999999888875 22 67899998775421111 224
Q ss_pred CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (262)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~ 210 (262)
+.|.+++.-. +..+ ...+-...+...|...++..+.+.+
T Consensus 481 ~a~~viv~~~------~~~~-~~~iv~~~~~~~~~~~iiar~~~~~ 519 (558)
T PRK10669 481 CARWLLLTIP------NGYE-AGEIVASAREKRPDIEIIARAHYDD 519 (558)
T ss_pred ccCEEEEEcC------ChHH-HHHHHHHHHHHCCCCeEEEEECCHH
Confidence 6786654321 1111 2223333455577888888776654
No 338
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=90.36 E-value=2.2 Score=35.52 Aligned_cols=107 Identities=16% Similarity=0.003 Sum_probs=71.6
Q ss_pred CCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
.+..|+-+|- .-..+..++. ....++..+|+++..+...++...+.+..| ++.+..|+.+. ++.- -
T Consensus 152 ~gK~I~vvGD-DDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~---------ie~~~~Dlr~p-lpe~--~ 218 (354)
T COG1568 152 EGKEIFVVGD-DDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN---------IEAFVFDLRNP-LPED--L 218 (354)
T ss_pred CCCeEEEEcC-chhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc---------hhheeehhccc-ChHH--H
Confidence 5677999982 2223333333 345579999999999999999888665543 77888887653 2110 1
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCC---cEEEEEeCC
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG---GTFIGTMPD 208 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~g---G~li~~~~~ 208 (262)
..+||+.+..-.- +......++.+-...|+.. |++-++.-.
T Consensus 219 ~~kFDvfiTDPpe-----Ti~alk~FlgRGI~tLkg~~~aGyfgiT~re 262 (354)
T COG1568 219 KRKFDVFITDPPE-----TIKALKLFLGRGIATLKGEGCAGYFGITRRE 262 (354)
T ss_pred HhhCCeeecCchh-----hHHHHHHHHhccHHHhcCCCccceEeeeecc
Confidence 3689999854321 2355677888877888776 777777643
No 339
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.08 E-value=3.1 Score=39.28 Aligned_cols=103 Identities=15% Similarity=0.077 Sum_probs=63.9
Q ss_pred CCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 85 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
..+|+=+|||. |......+....-.++.+|.+++.++.+++. . ...+.+|..+....... .-
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-g---------------~~v~~GDat~~~~L~~a-gi 462 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-G---------------MKVFYGDATRMDLLESA-GA 462 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-C---------------CeEEEEeCCCHHHHHhc-CC
Confidence 35788899886 5544444444444799999999999988652 2 56789998876532111 22
Q ss_pred CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV 211 (262)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~ 211 (262)
++.|++++... +.+ ....+-...+.+.|.-.++....|.+.
T Consensus 463 ~~A~~vvv~~~------d~~-~n~~i~~~ar~~~p~~~iiaRa~d~~~ 503 (621)
T PRK03562 463 AKAEVLINAID------DPQ-TSLQLVELVKEHFPHLQIIARARDVDH 503 (621)
T ss_pred CcCCEEEEEeC------CHH-HHHHHHHHHHHhCCCCeEEEEECCHHH
Confidence 46777775431 222 233334455556777777776666543
No 340
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=89.79 E-value=2.7 Score=32.38 Aligned_cols=62 Identities=21% Similarity=0.178 Sum_probs=39.9
Q ss_pred EeCcccccccccccCCCCCeeEEEEcccccc---------cCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797 147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHY---------SWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 147 ~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~---------~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 209 (262)
.-.|+..+..... .....||.|+-++--.- +.....-...++..+.++|+++|.+.++..+.
T Consensus 58 ~~VDat~l~~~~~-~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 58 HGVDATKLHKHFR-LKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred cCCCCCccccccc-ccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3446666543211 14578999997763221 00123456788999999999999999987543
No 341
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=89.71 E-value=3.3 Score=38.88 Aligned_cols=102 Identities=9% Similarity=0.037 Sum_probs=62.4
Q ss_pred CeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797 86 DVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (262)
Q Consensus 86 ~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (262)
.+|+=+|+|. |......+......++.+|.+++.++.+++. . ...+.+|+.+....... .-.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-g---------------~~v~~GDat~~~~L~~a-gi~ 463 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-G---------------YKVYYGDATQLELLRAA-GAE 463 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-C---------------CeEEEeeCCCHHHHHhc-CCc
Confidence 4677777765 4333333333444799999999999988752 2 56789998875532111 224
Q ss_pred CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV 211 (262)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~ 211 (262)
+.|++++... +.+. ...+-...|.+.|...++....|...
T Consensus 464 ~A~~vv~~~~------d~~~-n~~i~~~~r~~~p~~~IiaRa~~~~~ 503 (601)
T PRK03659 464 KAEAIVITCN------EPED-TMKIVELCQQHFPHLHILARARGRVE 503 (601)
T ss_pred cCCEEEEEeC------CHHH-HHHHHHHHHHHCCCCeEEEEeCCHHH
Confidence 6777765331 2222 22333445567888888888776643
No 342
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.35 E-value=4.1 Score=35.33 Aligned_cols=99 Identities=15% Similarity=0.140 Sum_probs=55.8
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--c
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L 156 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~ 156 (262)
...++.+||-.|||. |..+..+++. +..+|+++|.+++..+.+++.-. -.++...-.+.. .
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga---------------~~~i~~~~~~~~~~i 237 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA---------------THTVNSSGTDPVEAI 237 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC---------------ceEEcCCCcCHHHHH
Confidence 346788999998764 4444555554 33359999999988888865311 111111100100 0
Q ss_pred ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
.... ....+|+|+-.-.- ...+....+.+++||++++.
T Consensus 238 ~~~~-~~~g~d~vid~~g~----------~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 238 RALT-GGFGADVVIDAVGR----------PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred HHHh-CCCCCCEEEECCCC----------HHHHHHHHHHhccCCEEEEE
Confidence 0000 22358988743221 12456677889999998753
No 343
>PRK10458 DNA cytosine methylase; Provisional
Probab=89.34 E-value=1.6 Score=39.46 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=36.0
Q ss_pred CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 024797 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY 127 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~ 127 (262)
.-+++|+-||.|.+...+-..+...|.++|+++.+.+.-+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 4589999999999988886666656889999999888887765
No 344
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=88.67 E-value=2.1 Score=36.34 Aligned_cols=86 Identities=12% Similarity=-0.019 Sum_probs=51.6
Q ss_pred cCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 83 RRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 83 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
.++.+||=+|||. |.++..+++. +...++++|.+++.++.+.... ++ |..+.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~------------------~i--~~~~~------ 196 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE------------------VL--DPEKD------ 196 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc------------------cc--Chhhc------
Confidence 3567899999875 5555666654 4445778888877666554310 00 11000
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
....+|+|+-.-.- ...+..+.+.|+++|++++.
T Consensus 197 -~~~g~Dvvid~~G~----------~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 197 -PRRDYRAIYDASGD----------PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred -cCCCCCEEEECCCC----------HHHHHHHHHhhhcCcEEEEE
Confidence 12458988754322 12456778899999998754
No 345
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=88.59 E-value=3.3 Score=35.44 Aligned_cols=95 Identities=23% Similarity=0.257 Sum_probs=54.7
Q ss_pred CCCeEEEecCCC-CcchHHHHhcCC-CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 84 RGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
++.+||-.|||. |..+..+++... ..+++++.+++..+.+++.-. -.++..+-.. ......
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~---------------~~vi~~~~~~--~~~~~~ 227 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGA---------------DETVNLARDP--LAAYAA 227 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC---------------CEEEcCCchh--hhhhhc
Confidence 678899988765 555555655433 368999999888876655311 0111111000 100000
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
..+.+|+|+..... ...+..+.+.|+++|.++..
T Consensus 228 ~~~~vd~vld~~g~----------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 228 DKGDFDVVFEASGA----------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred cCCCccEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence 12458999854321 12457788999999998754
No 346
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=88.46 E-value=1.2 Score=39.21 Aligned_cols=49 Identities=14% Similarity=-0.007 Sum_probs=36.9
Q ss_pred HHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 024797 78 VQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY 127 (262)
Q Consensus 78 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~ 127 (262)
..+.+.++++||-|++|....+.. +.....+|++||+|+..+...+-+.
T Consensus 29 ~aL~i~~~d~vl~ItSaG~N~L~y-L~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 29 EALNIGPDDRVLTITSAGCNALDY-LLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred HHhCCCCCCeEEEEccCCchHHHH-HhcCCceEEEEeCCHHHHHHHHHHH
Confidence 344567899999999887755555 4456669999999999877766444
No 347
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=88.43 E-value=0.45 Score=41.80 Aligned_cols=62 Identities=19% Similarity=0.165 Sum_probs=48.2
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCC-CCeEEEeCcccc
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYE 153 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~ 153 (262)
++|..|.|+.||.|-+...++... ..|++-|+++++++..+.++... ... .+++.+.+|+..
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lN--------kv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLN--------KVDPSAIEIFNMDAKD 310 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhcccc--------ccchhheeeecccHHH
Confidence 688999999999999998886655 58999999999999999887632 222 236666666543
No 348
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=88.29 E-value=3.1 Score=35.84 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=30.1
Q ss_pred ccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 024797 82 ARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRT 125 (262)
Q Consensus 82 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~ 125 (262)
..++.+||=.|+|+ |..+..+++. +...+++++.+++-.+.+++
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 203 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS 203 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 45788999998765 4444445543 33347899999988887754
No 349
>PLN02740 Alcohol dehydrogenase-like
Probab=87.82 E-value=3.7 Score=36.01 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=32.6
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhcCC-CeEEEEeCChhHHHHHHH
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRT 125 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~ 125 (262)
...++++||-+|||. |..+..+++... ..|+++|.+++.++.+++
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 356788999999864 444455555433 369999999998888865
No 350
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=87.16 E-value=4.5 Score=31.52 Aligned_cols=107 Identities=13% Similarity=0.045 Sum_probs=57.7
Q ss_pred eEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccc--------cCCCCCeEEEeCcccccccc
Q 024797 87 VVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR--------KKFSFPARLICGDCYEVHLD 157 (262)
Q Consensus 87 ~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~--------~~~~~~v~~~~~d~~~~~~~ 157 (262)
+|.-+|+|+ |.-+..++....-.|+.+|.+++.++.+.+++...-....+. .....++. ...|+...
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~--- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA--- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG---
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH---
Confidence 356678875 433333333344489999999999999887765310000000 00011222 23333221
Q ss_pred cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
...|+|+-. +.++.+-.+.++.++.+.+.|+-.|.-.+..
T Consensus 77 ------~~adlViEa-----i~E~l~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 77 ------VDADLVIEA-----IPEDLELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp ------CTESEEEE------S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred ------hhhheehhh-----ccccHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence 256887632 2345688899999999999999887766543
No 351
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=87.12 E-value=2.3 Score=35.79 Aligned_cols=55 Identities=29% Similarity=0.400 Sum_probs=42.6
Q ss_pred HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhcc
Q 024797 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG 129 (262)
Q Consensus 73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~ 129 (262)
..+.+.. ...+++.|||.-+|+|..+... ......++|+|++++-++.+.+++..
T Consensus 212 ~~r~i~~-~s~~~diVlDpf~GsGtt~~aa-~~~~r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 212 IERLIRD-YSFPGDIVLDPFAGSGTTGIAA-KNLGRRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred HHHHHHh-cCCCCCEEeecCCCCChHHHHH-HHcCCceEEEecCHHHHHHHHHHHHh
Confidence 3444444 5678999999999999766654 34444799999999999999999873
No 352
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.00 E-value=4.3 Score=33.64 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=58.6
Q ss_pred cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
.++...+|+|+.+|..+-.+.+... .|++||.-+-+-.. .. ...|+....|...+.. .
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL----~d------------tg~v~h~r~DGfk~~P-----~ 267 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSL----MD------------TGQVTHLREDGFKFRP-----T 267 (358)
T ss_pred cCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhh----hc------------ccceeeeeccCccccc-----C
Confidence 6899999999999999998876555 89999976522111 11 2347777777766542 2
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCC
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG 199 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~g 199 (262)
..+.|-.+|..+= .+..+-..+..+|..|
T Consensus 268 r~~idWmVCDmVE--------kP~rv~~li~~Wl~nG 296 (358)
T COG2933 268 RSNIDWMVCDMVE--------KPARVAALIAKWLVNG 296 (358)
T ss_pred CCCCceEEeehhc--------CcHHHHHHHHHHHHcc
Confidence 4678888876643 3445555566666654
No 353
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=86.16 E-value=9.4 Score=32.38 Aligned_cols=96 Identities=18% Similarity=0.075 Sum_probs=56.1
Q ss_pred hccCCCeEEEecCC-CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797 81 YARRGDVVLDLACG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (262)
Q Consensus 81 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (262)
...++.+||-.||| .|..+..+++.....+++++.+++..+.+++.-. ..++...-......
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~---------------~~~~~~~~~~~~~~-- 221 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGA---------------DEVVDSGAELDEQA-- 221 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCC---------------cEEeccCCcchHHh--
Confidence 44677889999887 4555555555544479999999988877754211 11111110000000
Q ss_pred cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
..+.+|+++....- ...+..+.+.|+++|.++..
T Consensus 222 --~~~~~d~vi~~~~~----------~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 222 --AAGGADVILVTVVS----------GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred --ccCCCCEEEECCCc----------HHHHHHHHHhcccCCEEEEE
Confidence 12458988753211 12456778899999988764
No 354
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=86.01 E-value=14 Score=28.39 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=61.6
Q ss_pred cCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc-cccc
Q 024797 83 RRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-LDKV 159 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~ 159 (262)
.++.+|+-|||=+- -..+.+ .....++..|++...... +.+ .|..-|..... +...
T Consensus 24 ~~~~~iaclstPsl--~~~l~~~~~~~~~~~Lle~D~RF~~~------------------~~~-~F~fyD~~~p~~~~~~ 82 (162)
T PF10237_consen 24 LDDTRIACLSTPSL--YEALKKESKPRIQSFLLEYDRRFEQF------------------GGD-EFVFYDYNEPEELPEE 82 (162)
T ss_pred CCCCEEEEEeCcHH--HHHHHhhcCCCccEEEEeecchHHhc------------------CCc-ceEECCCCChhhhhhh
Confidence 35679999999663 222322 244579999998743221 112 35555654321 1111
Q ss_pred cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 209 (262)
-.++||+|++.--+- +.+-..+....+..++++++.++++++..
T Consensus 83 --l~~~~d~vv~DPPFl----~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 83 --LKGKFDVVVIDPPFL----SEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred --cCCCceEEEECCCCC----CHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 147999999987662 44555666677777778899999887654
No 355
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=85.84 E-value=2 Score=38.50 Aligned_cols=114 Identities=20% Similarity=0.146 Sum_probs=69.8
Q ss_pred CCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc--cccc
Q 024797 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL--DKVL 160 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~ 160 (262)
.+..+|-+|-|.|.+...+... +...++++++.+.|++.|+..+...- ..+..+.-.|....-. .+..
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---------~~r~~V~i~dGl~~~~~~~k~~ 365 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---------SDRNKVHIADGLDFLQRTAKSQ 365 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---------hhhhhhhHhhchHHHHHHhhcc
Confidence 4567899999999887776443 44579999999999999998875210 0112222222222111 0111
Q ss_pred CCCCCeeEEEEcc---ccccc-CCCHHH-HHHHHHHHHhccCCCcEEEEEe
Q 024797 161 ADDAPFDICSCQF---AMHYS-WSTEAR-ARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 161 ~~~~~fD~V~~~~---~l~~~-~~~~~~-~~~~l~~~~~~L~~gG~li~~~ 206 (262)
..+..||+++..- -.|-+ ++++.- ...++..+..+|.|.|.+++..
T Consensus 366 ~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 366 QEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred ccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 1456789888532 01111 222222 3668889999999999998865
No 356
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=85.22 E-value=5.4 Score=34.51 Aligned_cols=97 Identities=18% Similarity=0.136 Sum_probs=57.7
Q ss_pred hccCCCeEEEecC-C-CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC----ccccc
Q 024797 81 YARRGDVVLDLAC-G-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG----DCYEV 154 (262)
Q Consensus 81 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~----d~~~~ 154 (262)
...++.+||=.|+ | .|..+..+++....++++++.+++..+.+++.+. . -.++.. +...
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lG-------------a-~~vi~~~~~~~~~~- 219 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLG-------------F-DEAFNYKEEPDLDA- 219 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcC-------------C-CEEEECCCcccHHH-
Confidence 3567899999998 3 4666666766544579999999888777764332 0 011111 1110
Q ss_pred ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
..... ..+.+|+|+-... ...+....+.|+++|.+++.
T Consensus 220 ~i~~~--~~~gvD~v~d~vG-----------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 220 ALKRY--FPEGIDIYFDNVG-----------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred HHHHH--CCCCcEEEEECCC-----------HHHHHHHHHHhccCCEEEEE
Confidence 01001 1246898874321 12557788899999998753
No 357
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.20 E-value=7.7 Score=34.82 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=52.9
Q ss_pred eEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 87 VVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 87 ~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
+|+=+||| ..+..+++ .....|+++|.+++.++.+++... +.++.+|..+....... .-
T Consensus 2 ~viIiG~G--~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~---------------~~~~~gd~~~~~~l~~~-~~ 63 (453)
T PRK09496 2 KIIIVGAG--QVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLD---------------VRTVVGNGSSPDVLREA-GA 63 (453)
T ss_pred EEEEECCC--HHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcC---------------EEEEEeCCCCHHHHHHc-CC
Confidence 56777775 45554443 334479999999988777765332 67788887653221100 13
Q ss_pred CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
..+|.|++...- ......+....+.+.|.-.+++.+
T Consensus 64 ~~a~~vi~~~~~-------~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 64 EDADLLIAVTDS-------DETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred CcCCEEEEecCC-------hHHHHHHHHHHHHhcCCCeEEEEE
Confidence 467877764321 222333444455554554555544
No 358
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=85.01 E-value=2.3 Score=30.99 Aligned_cols=91 Identities=11% Similarity=0.103 Sum_probs=44.3
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (262)
+..+|+|+|-|.=-.....++...-.|+++|+.+. .+. ..+.++.-|+++..+. . -
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~-----------------~g~~~v~DDif~P~l~-i---Y 68 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP-----------------EGVNFVVDDIFNPNLE-I---Y 68 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S------------------------STTEE---SSS--HH-H---H
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc-----------------cCcceeeecccCCCHH-H---h
Confidence 45599999999755444444433247999999986 221 1267888888774321 1 1
Q ss_pred CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
...|+|++.. ++.+.+..+.++++.+ |.-+++..-
T Consensus 69 ~~a~lIYSiR-------PP~El~~~il~lA~~v--~adlii~pL 103 (127)
T PF03686_consen 69 EGADLIYSIR-------PPPELQPPILELAKKV--GADLIIRPL 103 (127)
T ss_dssp TTEEEEEEES---------TTSHHHHHHHHHHH--T-EEEEE-B
T ss_pred cCCcEEEEeC-------CChHHhHHHHHHHHHh--CCCEEEECC
Confidence 4679998755 3333444555555443 455666543
No 359
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=84.95 E-value=7.4 Score=33.07 Aligned_cols=98 Identities=13% Similarity=0.019 Sum_probs=56.5
Q ss_pred hccCCCeEEEecC--CCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc-cccc-c
Q 024797 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVH-L 156 (262)
Q Consensus 81 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~-~~~~-~ 156 (262)
...++.+||=.|+ |.|..+..+++....++++++.+++..+.+++ +. . -.++..+- .... .
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~-lG-------------a-~~vi~~~~~~~~~~~ 199 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK-LG-------------F-DVAFNYKTVKSLEET 199 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cC-------------C-CEEEeccccccHHHH
Confidence 3567889998885 34666666666544579999999888777754 22 0 01111110 0100 0
Q ss_pred ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
.... ..+.+|+|+-...- ..+....+.|+++|.++..
T Consensus 200 ~~~~-~~~gvdvv~d~~G~-----------~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 200 LKKA-SPDGYDCYFDNVGG-----------EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred HHHh-CCCCeEEEEECCCH-----------HHHHHHHHHhCcCcEEEEe
Confidence 0000 22468988742211 1346788899999999853
No 360
>PLN02827 Alcohol dehydrogenase-like
Probab=84.92 E-value=6.5 Score=34.48 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=30.8
Q ss_pred ccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 024797 82 ARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRT 125 (262)
Q Consensus 82 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~ 125 (262)
..++.+||-.|+|. |..+..+++. +...++++|.+++..+.+++
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 46788999998764 4444445543 33358899999988887754
No 361
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=84.89 E-value=5.6 Score=34.60 Aligned_cols=94 Identities=17% Similarity=0.118 Sum_probs=50.6
Q ss_pred cCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEe-Cccccccccccc
Q 024797 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVHLDKVL 160 (262)
Q Consensus 83 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~ 160 (262)
.++.+||-.|+|. |..+..+++.....+++++.+++....+.+.+. . ..++. .+... ...
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~G---a-----------~~vi~~~~~~~--~~~-- 243 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLG---A-----------DSFLVSTDPEK--MKA-- 243 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCC---C-----------cEEEcCCCHHH--HHh--
Confidence 4688899898875 545555555444468888877654433322221 0 01111 11001 110
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
..+.+|+|+-...- ...+....+.|++||.++..
T Consensus 244 -~~~~~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 244 -AIGTMDYIIDTVSA----------VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred -hcCCCCEEEECCCC----------HHHHHHHHHHhcCCcEEEEe
Confidence 11247888743221 12466788899999998754
No 362
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.81 E-value=6.9 Score=33.26 Aligned_cols=99 Identities=18% Similarity=0.123 Sum_probs=55.7
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhcCCCe-EEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (262)
...++.+||-.|+|. |..+..+++....+ ++.++.+++..+.+++... -.++..+-.......
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~---------------~~~~~~~~~~~~~~~ 220 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA---------------TETVDPSREDPEAQK 220 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC---------------eEEecCCCCCHHHHH
Confidence 345788999998653 44555555543334 8899999888877754321 011111111110000
Q ss_pred ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
......+|+|+....- ...+..+.+.|+++|.++..
T Consensus 221 -~~~~~~vd~v~~~~~~----------~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 221 -EDNPYGFDVVIEATGV----------PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred -HhcCCCCcEEEECCCC----------hHHHHHHHHHHhcCCEEEEE
Confidence 0134568999853211 23566778889999998753
No 363
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.64 E-value=4.2 Score=34.25 Aligned_cols=81 Identities=20% Similarity=0.063 Sum_probs=55.2
Q ss_pred CCCeEEEecCCCCcchHHHH----hcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc--
Q 024797 84 RGDVVLDLACGKGGDLIKWD----KAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-- 157 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-- 157 (262)
.+..||=-|.|.| ++..++ +.+. +++..|++++..+...+..... + .+....+|+.+...-
T Consensus 37 ~g~~vLITGgg~G-lGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~----------g-~~~~y~cdis~~eei~~ 103 (300)
T KOG1201|consen 37 SGEIVLITGGGSG-LGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKI----------G-EAKAYTCDISDREEIYR 103 (300)
T ss_pred cCCEEEEeCCCch-HHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhc----------C-ceeEEEecCCCHHHHHH
Confidence 5788999999987 555443 3333 7889999999888877766521 1 588889998764321
Q ss_pred ---cccCCCCCeeEEEEcccccc
Q 024797 158 ---KVLADDAPFDICSCQFAMHY 177 (262)
Q Consensus 158 ---~~~~~~~~fD~V~~~~~l~~ 177 (262)
....+-+..|+++.+.++.+
T Consensus 104 ~a~~Vk~e~G~V~ILVNNAGI~~ 126 (300)
T KOG1201|consen 104 LAKKVKKEVGDVDILVNNAGIVT 126 (300)
T ss_pred HHHHHHHhcCCceEEEecccccc
Confidence 11114578999998875543
No 364
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=84.61 E-value=4.2 Score=37.38 Aligned_cols=94 Identities=14% Similarity=-0.002 Sum_probs=65.3
Q ss_pred CCCeEEEecCCCCcchHHHHh----cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797 84 RGDVVLDLACGKGGDLIKWDK----AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (262)
.+++||--|.| |.++..+.+ ...++++.+|.++..+......+.+.. ...++.+.-+|+.+...-..
T Consensus 249 ~gK~vLVTGag-GSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~--------~~~~~~~~igdVrD~~~~~~ 319 (588)
T COG1086 249 TGKTVLVTGGG-GSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKF--------PELKLRFYIGDVRDRDRVER 319 (588)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhC--------CCcceEEEecccccHHHHHH
Confidence 57788877755 667666544 466789999999999888887776311 12457889999987653222
Q ss_pred cCCCCCeeEEEEcccccccCCCHHHHH
Q 024797 160 LADDAPFDICSCQFAMHYSWSTEARAR 186 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~ 186 (262)
....-+.|+|+...++.|++-...++.
T Consensus 320 ~~~~~kvd~VfHAAA~KHVPl~E~nP~ 346 (588)
T COG1086 320 AMEGHKVDIVFHAAALKHVPLVEYNPE 346 (588)
T ss_pred HHhcCCCceEEEhhhhccCcchhcCHH
Confidence 224567999999999998844333343
No 365
>PLN02494 adenosylhomocysteinase
Probab=84.12 E-value=3.6 Score=37.15 Aligned_cols=88 Identities=11% Similarity=-0.015 Sum_probs=53.1
Q ss_pred CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
.+.+|+-+|+|. |......++....+|+++|.++.....+...- ..+ .++.+. +
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G----------------~~v--v~leEa-l------ 307 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG----------------YQV--LTLEDV-V------ 307 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC----------------Cee--ccHHHH-H------
Confidence 688999999997 55555555443347999999886544443321 111 122111 1
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
...|+|++.-.-.+ .+..+..+.+|+||+++..-
T Consensus 308 -~~ADVVI~tTGt~~---------vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 308 -SEADIFVTTTGNKD---------IIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred -hhCCEEEECCCCcc---------chHHHHHhcCCCCCEEEEcC
Confidence 34699987433222 23366788899999987654
No 366
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=83.71 E-value=11 Score=32.49 Aligned_cols=53 Identities=25% Similarity=0.242 Sum_probs=37.9
Q ss_pred HHHHHhccCCCeEEEecCCC-CcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhc
Q 024797 76 VLVQLYARRGDVVLDLACGK-GGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYN 128 (262)
Q Consensus 76 ~l~~~~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~ 128 (262)
.+......++++|.-+|||. |.....-++ .+.++++++|+++.-++.|++.-.
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGA 231 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGA 231 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCC
Confidence 33444567899999999986 322222222 467789999999999999998644
No 367
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=83.37 E-value=7.2 Score=27.95 Aligned_cols=88 Identities=14% Similarity=0.039 Sum_probs=51.5
Q ss_pred CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (262)
Q Consensus 85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (262)
..+|+|+|.|-=......++...-.++++|+.+. .|. ..+.+..-|+++.... --.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~-----------------~g~~~v~DDitnP~~~----iY~ 69 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP-----------------EGLRFVVDDITNPNIS----IYE 69 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc-----------------ccceEEEccCCCccHH----Hhh
Confidence 3489999998654444433333347999999885 221 2377888888774431 113
Q ss_pred CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
..|+|.+.- ++++....+-.+.+.+. -.+++.
T Consensus 70 ~A~lIYSiR-------pppEl~~~ildva~aVg--a~l~I~ 101 (129)
T COG1255 70 GADLIYSIR-------PPPELQSAILDVAKAVG--APLYIK 101 (129)
T ss_pred CccceeecC-------CCHHHHHHHHHHHHhhC--CCEEEE
Confidence 457776533 44555555555655544 334443
No 368
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=83.26 E-value=9.2 Score=31.51 Aligned_cols=94 Identities=19% Similarity=0.112 Sum_probs=54.8
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhcCCCe-EEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (262)
...++.+||-.|||. |..+..+++..... +++++.+++..+.+++.-. . -.+.... ... .
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~------------~--~~~~~~~-~~~-~-- 155 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGP------------A--DPVAADT-ADE-I-- 155 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCC------------C--ccccccc-hhh-h--
Confidence 346788899888765 54555555543335 9999999888877665320 0 0000000 000 1
Q ss_pred ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
....+|+|+..... ...+....+.|+++|.++..
T Consensus 156 ---~~~~~d~vl~~~~~----------~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 156 ---GGRGADVVIEASGS----------PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred ---cCCCCCEEEEccCC----------hHHHHHHHHHhcCCcEEEEE
Confidence 23468988743211 12456778889999998753
No 369
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=83.12 E-value=3.8 Score=33.21 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=43.6
Q ss_pred eEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHH-HhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797 87 VVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRT-RYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (262)
Q Consensus 87 ~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (262)
+++=+|||. |..+...+......|+.+|.+++.++.... ... +..+++|..+.....-. .-.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~---------------~~~v~gd~t~~~~L~~a-gi~ 65 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELD---------------THVVIGDATDEDVLEEA-GID 65 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcc---------------eEEEEecCCCHHHHHhc-CCC
Confidence 567788876 433333333343479999999998887433 333 77888988765431111 235
Q ss_pred CeeEEEEc
Q 024797 165 PFDICSCQ 172 (262)
Q Consensus 165 ~fD~V~~~ 172 (262)
.+|++++.
T Consensus 66 ~aD~vva~ 73 (225)
T COG0569 66 DADAVVAA 73 (225)
T ss_pred cCCEEEEe
Confidence 68888864
No 370
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=83.00 E-value=3.8 Score=36.10 Aligned_cols=72 Identities=13% Similarity=0.050 Sum_probs=48.3
Q ss_pred CeEEEecCCC-CcchHHH-HhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc-ccccCC
Q 024797 86 DVVLDLACGK-GGDLIKW-DKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKVLAD 162 (262)
Q Consensus 86 ~~vLDiGcG~-G~~~~~l-~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~ 162 (262)
.+||-+|||. |+..... ++.....|+..|-|.+.++.+..... .+++.++.|+.+.+- ..++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-------------~~v~~~~vD~~d~~al~~li-- 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-------------GKVEALQVDAADVDALVALI-- 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-------------ccceeEEecccChHHHHHHH--
Confidence 4799999975 4444433 33454689999999988888876543 258889999877632 1222
Q ss_pred CCCeeEEEEcc
Q 024797 163 DAPFDICSCQF 173 (262)
Q Consensus 163 ~~~fD~V~~~~ 173 (262)
..+|+|+...
T Consensus 67 -~~~d~VIn~~ 76 (389)
T COG1748 67 -KDFDLVINAA 76 (389)
T ss_pred -hcCCEEEEeC
Confidence 3458888654
No 371
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.98 E-value=12 Score=33.55 Aligned_cols=72 Identities=13% Similarity=-0.072 Sum_probs=45.5
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
...+|+=+|+|. ++..+++ .....++.+|.+++.++..++... .+.++.+|..+.......
T Consensus 230 ~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~--------------~~~~i~gd~~~~~~L~~~ 293 (453)
T PRK09496 230 PVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEELP--------------NTLVLHGDGTDQELLEEE 293 (453)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC--------------CCeEEECCCCCHHHHHhc
Confidence 356788888864 4444433 334479999999998888776542 266788888654321111
Q ss_pred CCCCCeeEEEEc
Q 024797 161 ADDAPFDICSCQ 172 (262)
Q Consensus 161 ~~~~~fD~V~~~ 172 (262)
.-..+|.|++.
T Consensus 294 -~~~~a~~vi~~ 304 (453)
T PRK09496 294 -GIDEADAFIAL 304 (453)
T ss_pred -CCccCCEEEEC
Confidence 23567887753
No 372
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=82.56 E-value=7.7 Score=32.85 Aligned_cols=95 Identities=12% Similarity=0.062 Sum_probs=55.6
Q ss_pred ccCCCeEEEecCC--CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--cc
Q 024797 82 ARRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LD 157 (262)
Q Consensus 82 ~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~ 157 (262)
..++.+||=.|++ .|..+..+++....++++++.+++..+.+++ +. . -.++...-.++. ..
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~G-------------a-~~vi~~~~~~~~~~v~ 205 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-LG-------------F-DAVFNYKTVSLEEALK 205 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cC-------------C-CEEEeCCCccHHHHHH
Confidence 4678899888743 3556666666544479999998888888766 22 0 111111101110 00
Q ss_pred cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (262)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~ 204 (262)
.. ....+|+|+-... ...+....+.|+++|.++.
T Consensus 206 ~~--~~~gvd~vld~~g-----------~~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 206 EA--APDGIDCYFDNVG-----------GEFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred HH--CCCCcEEEEECCC-----------HHHHHHHHHhhccCCEEEE
Confidence 01 1246898874221 1345778889999999875
No 373
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=82.44 E-value=6.1 Score=35.13 Aligned_cols=41 Identities=10% Similarity=0.056 Sum_probs=29.0
Q ss_pred cCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHH
Q 024797 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDC 123 (262)
Q Consensus 83 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a 123 (262)
..+.+|+-+|+|. |......++....+|+++|.++.....+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A 234 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA 234 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH
Confidence 3688999999997 5555555554445799999888644333
No 374
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=82.39 E-value=11 Score=31.33 Aligned_cols=110 Identities=14% Similarity=0.064 Sum_probs=59.4
Q ss_pred cCCCeEEEecCCCCcchHHHHhc------CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc
Q 024797 83 RRGDVVLDLACGKGGDLIKWDKA------KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~~------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 156 (262)
.+...++|+|||.|.++..++.. ....++.||-...-. .+-.++... .....++=+..|+.++.+
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~--------~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKD--------ESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhcc--------CCCCceEEEEEEeeccch
Confidence 56779999999999988887652 234689999755322 222222210 001346667888888776
Q ss_pred ccccCCC-CCeeEEEEcccccccCCCHHHHHHHHHHHHhcc-------CCCcEEEEEe
Q 024797 157 DKVLADD-APFDICSCQFAMHYSWSTEARARRALANVSALL-------RPGGTFIGTM 206 (262)
Q Consensus 157 ~~~~~~~-~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L-------~~gG~li~~~ 206 (262)
..+.... ..-.+|. .--|++-...| ..|+-+.+.. +..|.++..+
T Consensus 88 ~~~~~~~~~~~~vv~---isKHLCG~ATD--laLRcl~~~~~~~~~~~~~~gi~iA~C 140 (259)
T PF05206_consen 88 SKLPELQNDEKPVVA---ISKHLCGAATD--LALRCLLNSQKLSEGNGSVRGIVIAPC 140 (259)
T ss_pred hhcccccCCCCcEEE---EEccccccchh--HHHHhhccCccccccCCccCeEEEEeC
Confidence 4433211 1112222 12344333333 3444444444 3578777665
No 375
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=82.36 E-value=2.2 Score=35.08 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhc
Q 024797 68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (262)
Q Consensus 68 ~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~ 128 (262)
++..|+...+... +..+++|+-||+|..+..+.. ....++.-|+++..+...+..+.
T Consensus 7 ~l~~~I~~~ip~~---~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 7 KLAKWIIELIPKN---KHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp GGHHHHHHHS-S----S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC---CCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHHHHHh
Confidence 4445544443211 678999999999987776643 55679999999988877774443
No 376
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=82.21 E-value=16 Score=30.84 Aligned_cols=91 Identities=19% Similarity=0.078 Sum_probs=54.0
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (262)
...++.+||=.|+|. |..+..+++....++++++.+++..+.+++ +. +... .+.... .
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g---------------~~~~-~~~~~~-~--- 210 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LG---------------VETV-LPDEAE-S--- 210 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cC---------------CcEE-eCcccc-c---
Confidence 446788898887643 333334444444468999999988888876 32 1110 111111 1
Q ss_pred cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~ 204 (262)
....+|+|+-...- ...+..+.+.|+++|.++.
T Consensus 211 --~~~~~d~vid~~g~----------~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 211 --EGGGFDVVVEATGS----------PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred --cCCCCCEEEECCCC----------hHHHHHHHHHhhcCCEEEE
Confidence 34568999753211 2245667788899999886
No 377
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=81.87 E-value=4.9 Score=35.96 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=51.3
Q ss_pred CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
.+.+|+-+|+|. |......++....+|+.+|.++.....+... + .. ..++.+.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~--------------G--~~--v~~l~ea-------- 264 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD--------------G--FR--VMTMEEA-------- 264 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc--------------C--CE--ecCHHHH--------
Confidence 688999999996 5444444444444899999988655444321 1 11 1122211
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHH-HHHhccCCCcEEEEE
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALA-NVSALLRPGGTFIGT 205 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~-~~~~~L~~gG~li~~ 205 (262)
-...|+|+..-.- ..++. ...+.+|+|++++..
T Consensus 265 l~~aDVVI~aTG~----------~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 265 AELGDIFVTATGN----------KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred HhCCCEEEECCCC----------HHHHHHHHHhcCCCCCEEEEc
Confidence 1357999764321 12343 577889999987654
No 378
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=81.39 E-value=2.7 Score=36.94 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=29.1
Q ss_pred CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 024797 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY 127 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~ 127 (262)
++.+|+=+|+|. |..+...+......|+.+|.+++.++.+...+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~ 210 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF 210 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc
Confidence 456799999984 54555544433337999999987766655443
No 379
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=81.03 E-value=8.4 Score=32.90 Aligned_cols=101 Identities=13% Similarity=0.007 Sum_probs=53.8
Q ss_pred CCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 84 RGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
++.+|+-+|+|. |......+.. +...++.+|.+++......+.+. ......+ ++..
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g---------------~~~~~~~--~~~~----- 234 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELG---------------GNAVPLD--ELLE----- 234 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcC---------------CeEEeHH--HHHH-----
Confidence 678999999975 5444444333 44579999998765433333332 1111111 1110
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHH
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~ 213 (262)
.-...|+|+..-.-.+ +...+..+.+....+|.+++....+..+-
T Consensus 235 ~l~~aDvVi~at~~~~-------~~~~~~~~~~~~~~~~~~viDlavPrdi~ 279 (311)
T cd05213 235 LLNEADVVISATGAPH-------YAKIVERAMKKRSGKPRLIVDLAVPRDIE 279 (311)
T ss_pred HHhcCCEEEECCCCCc-------hHHHHHHHHhhCCCCCeEEEEeCCCCCCc
Confidence 1134799987654432 12333333333334678888876654433
No 380
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=80.75 E-value=14 Score=32.22 Aligned_cols=45 Identities=27% Similarity=0.322 Sum_probs=31.6
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRT 125 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~ 125 (262)
...++.+||=.|+|. |..+..+++. +...++++|.+++.++.+++
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~ 229 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK 229 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 346788999998764 4444445543 33369999999998888764
No 381
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.59 E-value=3.4 Score=35.16 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=34.9
Q ss_pred HhccCCCeEEEecCCCCcchH-HHHh-cCCCeEEEEeCChhHHHHHHHHhc
Q 024797 80 LYARRGDVVLDLACGKGGDLI-KWDK-AKIGYYVGIDIAEGSIEDCRTRYN 128 (262)
Q Consensus 80 ~~~~~~~~vLDiGcG~G~~~~-~l~~-~~~~~v~gvD~s~~~~~~a~~~~~ 128 (262)
....++++|.-+|+|.=.++. .-++ .+..+++|||++++-.+.|++.-.
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGa 238 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGA 238 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCc
Confidence 345688889889888622322 2222 467789999999999999987543
No 382
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=80.41 E-value=18 Score=30.24 Aligned_cols=88 Identities=11% Similarity=0.002 Sum_probs=49.3
Q ss_pred eEEEecCCC-C-cchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797 87 VVLDLACGK-G-GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (262)
Q Consensus 87 ~vLDiGcG~-G-~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (262)
+|.=||+|. | .++..+.+.+ ..|+++|.+++.++.+.+... +.....+. + .-.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~d~~~~~~~~a~~~g~---------------~~~~~~~~-~--------~~~ 56 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG-HTVYGVSRRESTCERAIERGL---------------VDEASTDL-S--------LLK 56 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCC---------------cccccCCH-h--------Hhc
Confidence 466678775 2 2333333333 379999999988877765311 11111111 1 113
Q ss_pred CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
..|+|+..- +......+++++...++++. ++..+.
T Consensus 57 ~aDlVilav-------p~~~~~~~~~~l~~~l~~~~-ii~d~~ 91 (279)
T PRK07417 57 DCDLVILAL-------PIGLLLPPSEQLIPALPPEA-IVTDVG 91 (279)
T ss_pred CCCEEEEcC-------CHHHHHHHHHHHHHhCCCCc-EEEeCc
Confidence 468888654 33445667888888887764 444433
No 383
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=80.39 E-value=5 Score=34.17 Aligned_cols=97 Identities=15% Similarity=0.292 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHhccCCCe--EEEecCCCCcchHHHHhc---CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCC
Q 024797 68 KLNNWIKSVLVQLYARRGDV--VLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF 142 (262)
Q Consensus 68 ~~~~~~~~~l~~~~~~~~~~--vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 142 (262)
..-.|+..+|..-...++.. =+|||.|. ..++.+.. ..-..+++|+.+..+..|+.+..+.+ +..
T Consensus 84 nYihwI~DLLss~q~~k~~i~~GiDIgtga--sci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~--------lss 153 (419)
T KOG2912|consen 84 NYIHWIEDLLSSQQSDKSTIRRGIDIGTGA--SCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNN--------LSS 153 (419)
T ss_pred hhHHHHHHHhhcccCCCcceeeeeeccCch--hhhHHhhhchhccceeeeeeccccccchhhccccccc--------ccc
Confidence 45567777766543223333 26777665 34443321 23358899999999999999887432 333
Q ss_pred CeEEEeCccccccccccc--CCCCCeeEEEEccc
Q 024797 143 PARLICGDCYEVHLDKVL--ADDAPFDICSCQFA 174 (262)
Q Consensus 143 ~v~~~~~d~~~~~~~~~~--~~~~~fD~V~~~~~ 174 (262)
.+.+++-....-.+.+.. .++..||.+.|+--
T Consensus 154 ~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPP 187 (419)
T KOG2912|consen 154 LIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPP 187 (419)
T ss_pred ceeeEEecchhhcchhhhccCccceeeEEecCCc
Confidence 444444322111111100 02445888887653
No 384
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=79.92 E-value=17 Score=31.17 Aligned_cols=101 Identities=20% Similarity=0.159 Sum_probs=56.4
Q ss_pred HHhccCCCeEEEecCCC-CcchHHHHhcCCCe-EEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc--
Q 024797 79 QLYARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-- 154 (262)
Q Consensus 79 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-- 154 (262)
.....++.+||-.|+|. |..+..+++..... ++.++.+++..+.+++. . . -.++..+-...
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g---~-----------~~vi~~~~~~~~~ 221 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-G---A-----------THTVNVRTEDTPE 221 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-C---C-----------cEEeccccccchh
Confidence 33456788888887654 54555555543334 88998888877777542 2 0 01111110110
Q ss_pred ---ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 155 ---HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 155 ---~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
.+.... ....+|+|+-.... ...+....+.|+++|.++..
T Consensus 222 ~~~~~~~~~-~~~~~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 222 SAEKIAELL-GGKGPDVVIECTGA----------ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred HHHHHHHHh-CCCCCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 000111 33559999854321 12567788899999998754
No 385
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=79.48 E-value=17 Score=31.02 Aligned_cols=98 Identities=12% Similarity=0.173 Sum_probs=54.0
Q ss_pred ccCCCeEEEecCCC-CcchHHHHhcCC-CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--cc
Q 024797 82 ARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LD 157 (262)
Q Consensus 82 ~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~ 157 (262)
..++.+||..|+|. |..+..+++... ..+++++.++...+.+++.-. ..++...-.++. +.
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~---------------~~vi~~~~~~~~~~i~ 229 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGA---------------TDIINPKNGDIVEQIL 229 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCC---------------cEEEcCCcchHHHHHH
Confidence 45778888877653 545555555433 468888888877776654311 111111100000 00
Q ss_pred cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
... +.+.+|+|+-...- ...+....+.|+++|.++..
T Consensus 230 ~~~-~~~~~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 230 ELT-GGRGVDCVIEAVGF----------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred HHc-CCCCCcEEEEccCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 011 33568988743211 13567778899999998753
No 386
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=79.33 E-value=31 Score=27.74 Aligned_cols=101 Identities=16% Similarity=0.159 Sum_probs=60.3
Q ss_pred cCCCeEEEecCCCCc--chHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797 83 RRGDVVLDLACGKGG--DLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~--~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (262)
.....|+++.|+.|. .+..|+. .-.++++.|-..+..+...++.+.+.+. ...++|+.++..+.-+.
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~--------~~~vEfvvg~~~e~~~~ 111 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL--------SDVVEFVVGEAPEEVMP 111 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc--------cccceEEecCCHHHHHh
Confidence 455679999776543 2444432 4567899999998888888887764322 33478888885332111
Q ss_pred cccCCCCCeeEEEEcccccccCCCHHHHH-HHHHHHHhccCCCcEEEE
Q 024797 158 KVLADDAPFDICSCQFAMHYSWSTEARAR-RALANVSALLRPGGTFIG 204 (262)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~-~~l~~~~~~L~~gG~li~ 204 (262)
.-...|.++...-. ++.. .+|+.+. +.|.|-+++
T Consensus 112 ----~~~~iDF~vVDc~~-------~d~~~~vl~~~~--~~~~GaVVV 146 (218)
T PF07279_consen 112 ----GLKGIDFVVVDCKR-------EDFAARVLRAAK--LSPRGAVVV 146 (218)
T ss_pred ----hccCCCEEEEeCCc-------hhHHHHHHHHhc--cCCCceEEE
Confidence 22467888876643 3334 5555433 444555444
No 387
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=79.32 E-value=14 Score=32.58 Aligned_cols=107 Identities=12% Similarity=0.092 Sum_probs=57.0
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC---cccccc
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG---DCYEVH 155 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~---d~~~~~ 155 (262)
...++++||=.|+|. |..+..+++. +...++.+|.+++-++.+++.-. . .+... +... .
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga--------------~-~v~~~~~~~~~~-~ 245 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC--------------E-TVDLSKDATLPE-Q 245 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC--------------e-EEecCCcccHHH-H
Confidence 346788888888764 4444455543 44446777888888888876321 1 11110 1100 0
Q ss_pred cccccCCCCCeeEEEEcccccc---cCC-CHHHHHHHHHHHHhccCCCcEEEE
Q 024797 156 LDKVLADDAPFDICSCQFAMHY---SWS-TEARARRALANVSALLRPGGTFIG 204 (262)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~---~~~-~~~~~~~~l~~~~~~L~~gG~li~ 204 (262)
..... ....+|+|+-.-...- ..+ ........+....+.+++||.+++
T Consensus 246 v~~~~-~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 246 IEQIL-GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred HHHHc-CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 11111 2345899885433210 000 001123467888899999999865
No 388
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.89 E-value=21 Score=30.61 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=55.3
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--c
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L 156 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~ 156 (262)
...++.+||-.|+|. |..+..+++. +...++++|.+++..+.+++.-. ..++...-.++. .
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~---------------~~~v~~~~~~~~~~i 227 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGA---------------TDIVDYKNGDVVEQI 227 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC---------------ceEecCCCCCHHHHH
Confidence 345788899988763 4444445543 34369999999888777765211 011111101100 0
Q ss_pred ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (262)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~ 204 (262)
.... ....+|+|+-...- ...+..+.+.|+++|.++.
T Consensus 228 ~~~~-~~~~~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 228 LKLT-GGKGVDAVIIAGGG----------QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred HHHh-CCCCCcEEEECCCC----------HHHHHHHHHHhhcCCEEEE
Confidence 0011 23468988743211 1356788889999999874
No 389
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=78.66 E-value=17 Score=31.60 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=54.7
Q ss_pred ccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--cc
Q 024797 82 ARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LD 157 (262)
Q Consensus 82 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~ 157 (262)
..++.+||-.|+|. |..+..+++. +...++++|.++...+.+++.-. ..++..+-.++. ..
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~---------------~~~i~~~~~~~~~~v~ 248 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA---------------THVINPKEEDLVAAIR 248 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC---------------cEEecCCCcCHHHHHH
Confidence 45678899888754 4444455543 44469999999888777754211 111111111110 11
Q ss_pred cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
.. ....+|+|+-...- ...+..+.+.|+++|.++..
T Consensus 249 ~~--~~~~~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 249 EI--TGGGVDYALDTTGV----------PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred HH--hCCCCcEEEECCCC----------cHHHHHHHHHhccCCEEEEe
Confidence 11 13458988743211 12457788889999998754
No 390
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=78.63 E-value=6.2 Score=33.26 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=35.2
Q ss_pred ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhc
Q 024797 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (262)
Q Consensus 82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~ 128 (262)
...+.+|.-+|+|....+..+.+ ....+.+||+++..+...+-++.
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr-~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSR-APARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhc-CCceeEEEeCCHHHHHHHHHHHH
Confidence 45788999999997756665544 44589999999998887766553
No 391
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=78.62 E-value=23 Score=30.04 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=49.3
Q ss_pred CeEEEecCCC-Ccc-hHHHHhcCC-CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 86 DVVLDLACGK-GGD-LIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 86 ~~vLDiGcG~-G~~-~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
.+|.=||+|. |.. +..+...+. ..|+++|.+++.++.+++.-. ......+..+ .
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~---------------~~~~~~~~~~--------~ 63 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL---------------GDRVTTSAAE--------A 63 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC---------------CceecCCHHH--------H
Confidence 5788899886 332 223332332 379999999987776654210 0011111111 1
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li 203 (262)
-...|+|+..-.. .....++..+...+++|+.++
T Consensus 64 ~~~aDvViiavp~-------~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 64 VKGADLVILCVPV-------GASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred hcCCCEEEECCCH-------HHHHHHHHHHHhhCCCCCEEE
Confidence 1346888765422 334566777777888887554
No 392
>PRK12939 short chain dehydrogenase; Provisional
Probab=77.78 E-value=21 Score=28.76 Aligned_cols=81 Identities=11% Similarity=-0.035 Sum_probs=46.6
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc-c
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK-V 159 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~ 159 (262)
++.++|=.|++. ..+..+++ ....++++++.+++.+....+.+.. ...++.++++|+.+..... .
T Consensus 6 ~~~~vlItGa~g-~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----------~~~~~~~~~~Dl~~~~~~~~~ 74 (250)
T PRK12939 6 AGKRALVTGAAR-GLGAAFAEALAEAGATVAFNDGLAAEARELAAALEA----------AGGRAHAIAADLADPASVQRF 74 (250)
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh----------cCCcEEEEEccCCCHHHHHHH
Confidence 457788777644 35555543 2333688888887766655544431 1234788889987643210 0
Q ss_pred c----CCCCCeeEEEEcccc
Q 024797 160 L----ADDAPFDICSCQFAM 175 (262)
Q Consensus 160 ~----~~~~~fD~V~~~~~l 175 (262)
. ..-+..|+|+.+...
T Consensus 75 ~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 75 FDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 0 011568998876643
No 393
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.77 E-value=37 Score=27.74 Aligned_cols=111 Identities=10% Similarity=-0.042 Sum_probs=57.4
Q ss_pred CCCeEEEecCCCC-cchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc--
Q 024797 84 RGDVVLDLACGKG-GDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-- 157 (262)
Q Consensus 84 ~~~~vLDiGcG~G-~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-- 157 (262)
.+.++|-.|+++| ..+..+++ ....+|+.++.+++..+...+...+. ..+.++.+|+.+..-.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-----------~~~~~~~~D~~~~~~v~~ 77 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL-----------DAPIFLPLDVREPGQLEA 77 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh-----------ccceEEecCcCCHHHHHH
Confidence 4678999998752 45554443 23336888888765433233222210 1144677887654311
Q ss_pred ---cccCCCCCeeEEEEcccccc-------cC-CCHHHHHHH-----------HHHHHhccCCCcEEEEE
Q 024797 158 ---KVLADDAPFDICSCQFAMHY-------SW-STEARARRA-----------LANVSALLRPGGTFIGT 205 (262)
Q Consensus 158 ---~~~~~~~~fD~V~~~~~l~~-------~~-~~~~~~~~~-----------l~~~~~~L~~gG~li~~ 205 (262)
......+..|+++.+..+.. +. .+.++.... .+.+...++.+|.++..
T Consensus 78 ~~~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~i 147 (258)
T PRK07533 78 VFARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTM 147 (258)
T ss_pred HHHHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEE
Confidence 01112267899998765431 10 123333333 35566666777876543
No 394
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=77.66 E-value=20 Score=30.59 Aligned_cols=99 Identities=21% Similarity=0.219 Sum_probs=57.0
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc--ccc
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HLD 157 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~ 157 (262)
...++.+||-.|+|. |..+..+++....+++++..+++..+.+++... ..++...-..+ .+.
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~---------------~~v~~~~~~~~~~~l~ 220 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGA---------------DDTINVGDEDVAARLR 220 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCC---------------CEEecCcccCHHHHHH
Confidence 446788999998764 555666666555578888888887777754321 11111110010 000
Q ss_pred cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
.. .+...+|+++....- ...+..+.+.|+++|.++..
T Consensus 221 ~~-~~~~~vd~vld~~g~----------~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 221 EL-TDGEGADVVIDATGN----------PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred HH-hCCCCCCEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence 01 133458999854211 23457788899999998753
No 395
>PRK06701 short chain dehydrogenase; Provisional
Probab=77.43 E-value=24 Score=29.51 Aligned_cols=111 Identities=17% Similarity=0.120 Sum_probs=57.3
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChh-HHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc-c
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEG-SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-K 158 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 158 (262)
++.+||-.|++.| ++..+++ ....+|+.++.++. ..+.....+.. ...++.++.+|+.+.... .
T Consensus 45 ~~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~----------~~~~~~~~~~Dl~~~~~~~~ 113 (290)
T PRK06701 45 KGKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEK----------EGVKCLLIPGDVSDEAFCKD 113 (290)
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHh----------cCCeEEEEEccCCCHHHHHH
Confidence 4678999987665 4544433 23346888877642 23333332221 123477888888654321 0
Q ss_pred c----cCCCCCeeEEEEcccccccC-----CCHH-----------HHHHHHHHHHhccCCCcEEEEE
Q 024797 159 V----LADDAPFDICSCQFAMHYSW-----STEA-----------RARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 159 ~----~~~~~~fD~V~~~~~l~~~~-----~~~~-----------~~~~~l~~~~~~L~~gG~li~~ 205 (262)
. ...-+.+|+|+.+....... .+.+ -...+++.+.+.++++|.+++.
T Consensus 114 ~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~i 180 (290)
T PRK06701 114 AVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINT 180 (290)
T ss_pred HHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 0 00124689988765432110 0111 2234455566666677777654
No 396
>PRK08265 short chain dehydrogenase; Provisional
Probab=77.33 E-value=26 Score=28.71 Aligned_cols=78 Identities=17% Similarity=0.008 Sum_probs=45.2
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc-c-
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-K- 158 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~- 158 (262)
.+.++|-.|++.| ++..+++ ....+|+.+|.+++.++...+.. ..++.++.+|+.+.... .
T Consensus 5 ~~k~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~~~ 70 (261)
T PRK08265 5 AGKVAIVTGGATL-IGAAVARALVAAGARVAIVDIDADNGAAVAASL-------------GERARFIATDITDDAAIERA 70 (261)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------------CCeeEEEEecCCCHHHHHHH
Confidence 4568888887654 5554443 23337999998876555443332 12377888898764311 0
Q ss_pred ---ccCCCCCeeEEEEcccc
Q 024797 159 ---VLADDAPFDICSCQFAM 175 (262)
Q Consensus 159 ---~~~~~~~fD~V~~~~~l 175 (262)
....-+..|+++.+...
T Consensus 71 ~~~~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 71 VATVVARFGRVDILVNLACT 90 (261)
T ss_pred HHHHHHHhCCCCEEEECCCC
Confidence 00012568998877543
No 397
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=77.31 E-value=19 Score=30.78 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=54.7
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhcCCCe-EEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc-cccc
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLD 157 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~ 157 (262)
...++.+||-.|+|. |..+..+++..... +++++-+++..+.+++.-. ..++...-.. -.+.
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~---------------~~~~~~~~~~~~~~~ 220 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGA---------------DDTINPKEEDVEKVR 220 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC---------------CEEecCccccHHHHH
Confidence 346788899998654 55555555543334 8999888877776643211 1111111000 0000
Q ss_pred cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
... ....+|+|+....- ...+..+.+.|+++|.++..
T Consensus 221 ~~~-~~~~~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 221 ELT-EGRGADLVIEAAGS----------PATIEQALALARPGGKVVLV 257 (343)
T ss_pred HHh-CCCCCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 011 23458999743211 23557788899999998754
No 398
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=76.52 E-value=17 Score=31.00 Aligned_cols=92 Identities=12% Similarity=0.006 Sum_probs=52.8
Q ss_pred CeEEEecC--CCCcchHHHHhcCCC-eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--ccccc
Q 024797 86 DVVLDLAC--GKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDKVL 160 (262)
Q Consensus 86 ~~vLDiGc--G~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 160 (262)
.+||=.|+ |.|..+..+++.... ++++++.+++..+.+++.+. . -.++...-.++. ....
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lG-------------a-~~vi~~~~~~~~~~i~~~- 220 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELG-------------F-DAAINYKTDNVAERLREL- 220 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcC-------------C-cEEEECCCCCHHHHHHHH-
Confidence 78998886 346566666665443 79999999887777765432 0 011111101110 1111
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~ 204 (262)
....+|+|+-...- . .+....+.|+++|.++.
T Consensus 221 -~~~gvd~vid~~g~-------~----~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 221 -CPEGVDVYFDNVGG-------E----ISDTVISQMNENSHIIL 252 (345)
T ss_pred -CCCCceEEEECCCc-------H----HHHHHHHHhccCCEEEE
Confidence 12468999743211 1 24667889999999875
No 399
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=76.49 E-value=27 Score=30.09 Aligned_cols=42 Identities=24% Similarity=0.170 Sum_probs=27.7
Q ss_pred CCCeEEEecCCC-CcchHHHHhcCCC-eEEEEeCChhHHHHHHH
Q 024797 84 RGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRT 125 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~ 125 (262)
++.+||=.|+|. |..+..+++.... ++++++.+++..+.+++
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~ 220 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE 220 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 677888888653 3344445544333 79999988877766653
No 400
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=76.39 E-value=11 Score=33.47 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=32.4
Q ss_pred ccCCCeEEEec-CCC-CcchHHHHhc---CCCeEEEEeCChhHHHHHHHH
Q 024797 82 ARRGDVVLDLA-CGK-GGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTR 126 (262)
Q Consensus 82 ~~~~~~vLDiG-cG~-G~~~~~l~~~---~~~~v~gvD~s~~~~~~a~~~ 126 (262)
..++.+||=+| +|. |..+..+++. +..+++++|.+++-++.+++.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 45778999887 453 5555555553 224799999999999988875
No 401
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=75.94 E-value=18 Score=31.45 Aligned_cols=45 Identities=16% Similarity=0.317 Sum_probs=31.4
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRT 125 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~ 125 (262)
...++.+||=.|+|. |..+..+++. +..+++++|.+++.++.+++
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 346788999998753 4344445543 33379999999988888865
No 402
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=75.74 E-value=20 Score=30.63 Aligned_cols=96 Identities=17% Similarity=0.132 Sum_probs=57.1
Q ss_pred hccCCCeEEEecCC--CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEe-C---ccccc
Q 024797 81 YARRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-G---DCYEV 154 (262)
Q Consensus 81 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~-~---d~~~~ 154 (262)
...++.+||=.|++ .|..+..+++....++++++.+++..+.+++.+. . -.++. . +..+
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lG------------a--~~vi~~~~~~~~~~- 212 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLG------------F--DDAFNYKEEPDLDA- 212 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC------------C--ceeEEcCCcccHHH-
Confidence 35678899998873 3656666666544478999988888887776332 0 01111 1 1110
Q ss_pred ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (262)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~ 204 (262)
..... ..+.+|+|+-... ...+....+.|+++|.++.
T Consensus 213 ~i~~~--~~~gvd~v~d~~g-----------~~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 213 ALKRY--FPNGIDIYFDNVG-----------GKMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred HHHHh--CCCCcEEEEECCC-----------HHHHHHHHHHhccCcEEEE
Confidence 01111 1246898874221 1346778899999999875
No 403
>PRK08324 short chain dehydrogenase; Validated
Probab=75.60 E-value=14 Score=35.30 Aligned_cols=110 Identities=16% Similarity=0.099 Sum_probs=61.6
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc---
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD--- 157 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--- 157 (262)
++.+||-.|++.| ++..+++ ....+|+++|.++..++.+.+.+.. ...+.++.+|+.+....
T Consensus 421 ~gk~vLVTGasgg-IG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-----------~~~v~~v~~Dvtd~~~v~~~ 488 (681)
T PRK08324 421 AGKVALVTGAAGG-IGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-----------PDRALGVACDVTDEAAVQAA 488 (681)
T ss_pred CCCEEEEecCCCH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-----------cCcEEEEEecCCCHHHHHHH
Confidence 4578898887544 4443332 2334799999998777666554431 12477888887654311
Q ss_pred --cccCCCCCeeEEEEcccccccC----CCHHH-----------HHHHHHHHHhccCC---CcEEEEE
Q 024797 158 --KVLADDAPFDICSCQFAMHYSW----STEAR-----------ARRALANVSALLRP---GGTFIGT 205 (262)
Q Consensus 158 --~~~~~~~~fD~V~~~~~l~~~~----~~~~~-----------~~~~l~~~~~~L~~---gG~li~~ 205 (262)
......+.+|+|+.+......- .+.+. ...+++.+.+.+++ +|.+++.
T Consensus 489 ~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~v 556 (681)
T PRK08324 489 FEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFI 556 (681)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 0000125689999876532210 01111 23455666666665 5777654
No 404
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=75.35 E-value=21 Score=30.87 Aligned_cols=44 Identities=20% Similarity=0.009 Sum_probs=27.9
Q ss_pred cCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 024797 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTR 126 (262)
Q Consensus 83 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~ 126 (262)
.++.+||-.|+|. |..+..+++.....++.++.+++....+.+.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~ 223 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH 223 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh
Confidence 4678888887754 4444555554444688888777665555443
No 405
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=75.17 E-value=25 Score=30.15 Aligned_cols=101 Identities=20% Similarity=0.098 Sum_probs=54.0
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhcCC-CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (262)
...++.+||=.|+|. |..+..+++... ..+++++.+++..+.+++.-. ..-+.....+..+ .+..
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga------------~~~i~~~~~~~~~-~l~~ 235 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGA------------TIVLDPTEVDVVA-EVRK 235 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC------------CEEECCCccCHHH-HHHH
Confidence 345778888888643 333444444333 378999999888887754211 0000001111100 0000
Q ss_pred ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
.. ....+|+|+-.... ...+..+.+.|+++|.++..
T Consensus 236 ~~-~~~~~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 236 LT-GGGGVDVSFDCAGV----------QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred Hh-CCCCCCEEEECCCC----------HHHHHHHHHhccCCCEEEEE
Confidence 00 23458999853321 12456778889999997753
No 406
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.15 E-value=40 Score=26.84 Aligned_cols=111 Identities=10% Similarity=-0.022 Sum_probs=59.0
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc-cc
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-KV 159 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 159 (262)
++.+||-.|++.| .+..+++ .....|++++-+++.+....+.... ..++.++.+|+.+.... ..
T Consensus 4 ~~~~vlItGa~g~-iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------~~~~~~~~~Dl~~~~~~~~~ 71 (238)
T PRK05786 4 KGKKVAIIGVSEG-LGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK-----------YGNIHYVVGDVSSTESARNV 71 (238)
T ss_pred CCcEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------cCCeEEEECCCCCHHHHHHH
Confidence 4578999998754 5444443 2333799999888766555443321 12477888888753310 00
Q ss_pred ----cCCCCCeeEEEEccccccc--CCCHH-----------HHHHHHHHHHhccCCCcEEEEEe
Q 024797 160 ----LADDAPFDICSCQFAMHYS--WSTEA-----------RARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 160 ----~~~~~~fD~V~~~~~l~~~--~~~~~-----------~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
...-+.+|.++........ +...+ -...+++.+...++++|.+++..
T Consensus 72 ~~~~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 72 IEKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHHHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 0012456887766542210 00011 11233555566667788776543
No 407
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=75.06 E-value=16 Score=31.94 Aligned_cols=41 Identities=20% Similarity=-0.031 Sum_probs=26.5
Q ss_pred cCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhH-HHHH
Q 024797 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGS-IEDC 123 (262)
Q Consensus 83 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~-~~~a 123 (262)
.++.+||-.|+|. |..+..+++....++++++.+++. .+.+
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a 219 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAI 219 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHH
Confidence 4688899888864 444555555444468889877544 4444
No 408
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=75.03 E-value=5.5 Score=33.68 Aligned_cols=81 Identities=12% Similarity=0.026 Sum_probs=42.0
Q ss_pred CCCcchHHHHh----cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEE
Q 024797 94 GKGGDLIKWDK----AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDIC 169 (262)
Q Consensus 94 G~G~~~~~l~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V 169 (262)
|+|..+..+.+ .....++.+|.++..+-..++.+..... ..++...+..+.+|+.+.......+.....|+|
T Consensus 6 a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~----~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiV 81 (293)
T PF02719_consen 6 AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFP----DPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIV 81 (293)
T ss_dssp TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC------TTCEEEEE--CTSCCHHHHHHHHTT--T-SEE
T ss_pred cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhccc----ccCcccccCceeecccCHHHHHHHHhhcCCCEE
Confidence 55667776654 3556899999999998888877631100 001111233458898776543333355689999
Q ss_pred EEccccccc
Q 024797 170 SCQFAMHYS 178 (262)
Q Consensus 170 ~~~~~l~~~ 178 (262)
+...++.|+
T Consensus 82 fHaAA~KhV 90 (293)
T PF02719_consen 82 FHAAALKHV 90 (293)
T ss_dssp EE------H
T ss_pred EEChhcCCC
Confidence 999988887
No 409
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=74.99 E-value=5.2 Score=35.98 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=26.2
Q ss_pred CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
...|+|++.. +.+....+..++...||||..|.++
T Consensus 96 ~~ADvVviLl-------PDt~q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 96 PQADLVINLT-------PDKQHSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred HhCCEEEEcC-------ChHHHHHHHHHHHhhCCCCCEEEec
Confidence 4568887533 2234677779999999999999875
No 410
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=74.90 E-value=17 Score=30.13 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=41.0
Q ss_pred CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHH
Q 024797 107 IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARAR 186 (262)
Q Consensus 107 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~ 186 (262)
...|+|+|.++..++.|.+.-. +.-...+... -..+|+|+..- +.....
T Consensus 11 ~~~v~g~d~~~~~~~~a~~~g~---------------~~~~~~~~~~---------~~~~Dlvvlav-------P~~~~~ 59 (258)
T PF02153_consen 11 DVEVYGYDRDPETLEAALELGI---------------IDEASTDIEA---------VEDADLVVLAV-------PVSAIE 59 (258)
T ss_dssp TSEEEEE-SSHHHHHHHHHTTS---------------SSEEESHHHH---------GGCCSEEEE-S--------HHHHH
T ss_pred CeEEEEEeCCHHHHHHHHHCCC---------------eeeccCCHhH---------hcCCCEEEEcC-------CHHHHH
Confidence 4589999999999988865422 1112222111 13469998654 446678
Q ss_pred HHHHHHHhccCCCcEEE
Q 024797 187 RALANVSALLRPGGTFI 203 (262)
Q Consensus 187 ~~l~~~~~~L~~gG~li 203 (262)
.++.++...+++|+.++
T Consensus 60 ~~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 60 DVLEEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHCGS-TTSEEE
T ss_pred HHHHHhhhhcCCCcEEE
Confidence 89999999898876554
No 411
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=74.67 E-value=20 Score=28.46 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=24.2
Q ss_pred CCCeEEEecCCC-CcchH-HHHhcCCCeEEEEeCC
Q 024797 84 RGDVVLDLACGK-GGDLI-KWDKAKIGYYVGIDIA 116 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~-~l~~~~~~~v~gvD~s 116 (262)
...+||=+|||. |.... .++..+.++++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 567899999995 54433 3444677889999977
No 412
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=74.55 E-value=18 Score=30.92 Aligned_cols=98 Identities=15% Similarity=0.110 Sum_probs=54.0
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (262)
...++.+||=.|+|. |..+..+++....+++.++.+++.++.+++ +. . ..++...-.++. ...
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~-~g-------------~-~~~i~~~~~~~~-~~~ 223 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK-LG-------------A-HHYIDTSKEDVA-EAL 223 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-cC-------------C-cEEecCCCccHH-HHH
Confidence 445778999999653 444444555444478999998887777754 22 0 111111100110 000
Q ss_pred cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
. ....+|+++....- ...+..+.+.|+++|.++..
T Consensus 224 ~-~~~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 224 Q-ELGGAKLILATAPN----------AKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred H-hcCCCCEEEECCCc----------hHHHHHHHHHcccCCEEEEE
Confidence 0 11347888742111 23567778899999998753
No 413
>PRK07576 short chain dehydrogenase; Provisional
Probab=74.44 E-value=24 Score=29.01 Aligned_cols=80 Identities=9% Similarity=0.032 Sum_probs=45.4
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc---
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD--- 157 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--- 157 (262)
++.+||-.|.+.| .+..+++ .....|++++.+++.++...+.+.. ...++.++.+|+.+....
T Consensus 8 ~~k~ilItGasgg-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~i~~~ 76 (264)
T PRK07576 8 AGKNVVVVGGTSG-INLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQ----------AGPEGLGVSADVRDYAAVEAA 76 (264)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH----------hCCceEEEECCCCCHHHHHHH
Confidence 4678888886543 5554433 2333699999887766555443331 122467788888653310
Q ss_pred --cccCCCCCeeEEEEccc
Q 024797 158 --KVLADDAPFDICSCQFA 174 (262)
Q Consensus 158 --~~~~~~~~fD~V~~~~~ 174 (262)
......+.+|+++++..
T Consensus 77 ~~~~~~~~~~iD~vi~~ag 95 (264)
T PRK07576 77 FAQIADEFGPIDVLVSGAA 95 (264)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 00001246899987653
No 414
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=73.83 E-value=44 Score=28.20 Aligned_cols=91 Identities=12% Similarity=0.095 Sum_probs=52.7
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (262)
...++.+||=.|||. |..+..+++....+++.++.+++..+.+++ +. +... .+....
T Consensus 164 ~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~g---------------~~~~-~~~~~~----- 221 (329)
T cd08298 164 GLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE-LG---------------ADWA-GDSDDL----- 221 (329)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-hC---------------CcEE-eccCcc-----
Confidence 345777888887764 333334444444578899888877777643 22 1110 011111
Q ss_pred cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
+...+|+++..... ...+..+.+.|+++|.++..
T Consensus 222 --~~~~vD~vi~~~~~----------~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 222 --PPEPLDAAIIFAPV----------GALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred --CCCcccEEEEcCCc----------HHHHHHHHHHhhcCCEEEEE
Confidence 13457887643211 13577889999999998863
No 415
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=73.56 E-value=22 Score=29.50 Aligned_cols=102 Identities=19% Similarity=0.121 Sum_probs=49.3
Q ss_pred hccCCCeEEEecCCCCc-c--hHHHHh--cC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797 81 YARRGDVVLDLACGKGG-D--LIKWDK--AK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~G~-~--~~~l~~--~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (262)
..+...+||-+|+|+-. . +...++ .+ ...++-.|+.+ .. .+.-..+.+|...+
T Consensus 58 aVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d--------~v-------------SDa~~~~~~Dc~t~ 116 (299)
T PF06460_consen 58 AVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRD--------YV-------------SDADQSIVGDCRTY 116 (299)
T ss_dssp ---TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS----------B--------------SSSEEEES-GGGE
T ss_pred eeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhh--------hc-------------cccCCceecccccc
Confidence 34578899999999732 1 112222 12 22466667654 11 12244678888877
Q ss_pred ccccccCCCCCeeEEEEccc---cccc----CCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797 155 HLDKVLADDAPFDICSCQFA---MHYS----WSTEARARRALANVSALLRPGGTFIGTMPDA 209 (262)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~---l~~~----~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 209 (262)
. ++.++|+|++..- ..++ .....-..-+..-+...|+=||.+++.+...
T Consensus 117 ~------~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~ 172 (299)
T PF06460_consen 117 M------PPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEH 172 (299)
T ss_dssp E------ESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SS
T ss_pred C------CCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecc
Confidence 6 4789999998764 1111 0011123344556778899999999987543
No 416
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=73.43 E-value=12 Score=30.34 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=33.6
Q ss_pred CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHH
Q 024797 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCR 124 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~ 124 (262)
..+-|.+||-|.|..+..++.....+...++++...+.-.+
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ 90 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQ 90 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHH
Confidence 56789999999999999998877778888888877655443
No 417
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=73.17 E-value=47 Score=28.17 Aligned_cols=100 Identities=11% Similarity=-0.106 Sum_probs=52.6
Q ss_pred CeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797 86 DVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (262)
Q Consensus 86 ~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (262)
.+|+=+|+|. |.+....+......|+.++-+++.++..++.-. .... .......+ ...... +. +.+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~G---l~i~---~~g~~~~~-~~~~~~-~~-----~~~ 69 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGG---LTLV---EQGQASLY-AIPAET-AD-----AAE 69 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCC---eEEe---eCCcceee-ccCCCC-cc-----ccc
Confidence 4689999996 444433333333369999988766665554210 0000 00000111 000000 00 235
Q ss_pred CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
.||+|++.-=- .+...++..+...+.++..++..
T Consensus 70 ~~D~viv~vK~-------~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 70 PIHRLLLACKA-------YDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred ccCEEEEECCH-------HhHHHHHHHHHhhCCCCCEEEEE
Confidence 78998864422 33567788899999998865543
No 418
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=73.10 E-value=5.9 Score=29.72 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=23.8
Q ss_pred EecCCCC--cchHHHH--h-cCCCeEEEEeCChhHHHHHHHH
Q 024797 90 DLACGKG--GDLIKWD--K-AKIGYYVGIDIAEGSIEDCRTR 126 (262)
Q Consensus 90 DiGcG~G--~~~~~l~--~-~~~~~v~gvD~s~~~~~~a~~~ 126 (262)
|||++.| .....++ . ....+++++|+++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 1 3456799999999999988887
No 419
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.90 E-value=12 Score=32.19 Aligned_cols=103 Identities=16% Similarity=0.054 Sum_probs=55.8
Q ss_pred CeEEEecCCC-Cc-chHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCC-----CCCeEEEeCccccccccc
Q 024797 86 DVVLDLACGK-GG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-----SFPARLICGDCYEVHLDK 158 (262)
Q Consensus 86 ~~vLDiGcG~-G~-~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-----~~~v~~~~~d~~~~~~~~ 158 (262)
.+|--||+|+ |. .+..++ ...-.|+..|.+++.++.++..+..... .....+. ..++.+. .++.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a-~aG~~V~l~D~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~i~~~-~~l~~----- 79 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARAL-AHGLDVVAWDPAPGAEAALRANVANAWP-ALERQGLAPGASPARLRFV-ATIEA----- 79 (321)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHH-HHHHcCCChhhHHhhceec-CCHHH-----
Confidence 5788889985 33 222333 3334799999999988877664431100 0000000 0111211 11111
Q ss_pred ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~ 204 (262)
.-...|+|+-. +.++.+-...++.++-+.++|+.+|.-
T Consensus 80 ---av~~aDlViEa-----vpE~l~vK~~lf~~l~~~~~~~aIlaS 117 (321)
T PRK07066 80 ---CVADADFIQES-----APEREALKLELHERISRAAKPDAIIAS 117 (321)
T ss_pred ---HhcCCCEEEEC-----CcCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 11345777643 234557778899999999999874433
No 420
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=72.57 E-value=11 Score=34.12 Aligned_cols=98 Identities=11% Similarity=0.015 Sum_probs=56.1
Q ss_pred CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
.+.+|+-+|+|. |+.....++....+|+.+|.++.....+... . +.+ .++.+.
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~-G---------------~~~--~~leel-------- 306 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAME-G---------------YQV--VTLEDV-------- 306 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhc-C---------------cee--ccHHHH--------
Confidence 688999999997 5544444444334799998887654333221 1 111 122221
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHH-HHHHhccCCCcEEEEEeC-ChHHHHHHHh
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRAL-ANVSALLRPGGTFIGTMP-DANVIIKKLR 217 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l-~~~~~~L~~gG~li~~~~-~~~~~~~~~~ 217 (262)
-...|+|++.-.-.+ ++ .+....+|||++++-.-. +.+.....+.
T Consensus 307 l~~ADIVI~atGt~~----------iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~ 353 (476)
T PTZ00075 307 VETADIFVTATGNKD----------IITLEHMRRMKNNAIVGNIGHFDNEIQVAELE 353 (476)
T ss_pred HhcCCEEEECCCccc----------ccCHHHHhccCCCcEEEEcCCCchHHhHHHHH
Confidence 135799987532222 23 467788999998876543 3334444443
No 421
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=72.33 E-value=4.2 Score=32.36 Aligned_cols=51 Identities=20% Similarity=0.403 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEeCChHH---HHHHHhhhcC-CccccceEEEEc
Q 024797 183 ARARRALANVSALLRPGGTFIGTMPDANV---IIKKLREVEG-LAIGNSVYWIRL 233 (262)
Q Consensus 183 ~~~~~~l~~~~~~L~~gG~li~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~f 233 (262)
......+.++.|+|+|||.+++.+.+... +...+.+..+ ..+.+.+.|..-
T Consensus 33 ~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~iiW~K~ 87 (231)
T PF01555_consen 33 EWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFGGFFLRNEIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHTT-EEEEEEEEE-S
T ss_pred HHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhhhhheeccceeEec
Confidence 34678899999999999999988765432 3333334334 555565555543
No 422
>PRK05867 short chain dehydrogenase; Provisional
Probab=71.92 E-value=19 Score=29.24 Aligned_cols=81 Identities=14% Similarity=0.058 Sum_probs=48.5
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc-c-
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-K- 158 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~- 158 (262)
.+.++|-.|++.| .+..+++ ....+|+.++.+++.++...+.+... ..++.++.+|+.+.... .
T Consensus 8 ~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----------~~~~~~~~~D~~~~~~~~~~ 76 (253)
T PRK05867 8 HGKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS----------GGKVVPVCCDVSQHQQVTSM 76 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc----------CCeEEEEEccCCCHHHHHHH
Confidence 4678999998765 4444433 23337889998887766665544311 23467788887654311 0
Q ss_pred ---ccCCCCCeeEEEEcccc
Q 024797 159 ---VLADDAPFDICSCQFAM 175 (262)
Q Consensus 159 ---~~~~~~~fD~V~~~~~l 175 (262)
....-++.|+++.+...
T Consensus 77 ~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 77 LDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHHHHHhCCCCEEEECCCC
Confidence 00012578999977654
No 423
>PRK07806 short chain dehydrogenase; Provisional
Probab=71.57 E-value=38 Score=27.22 Aligned_cols=111 Identities=10% Similarity=-0.051 Sum_probs=56.2
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCCh-hHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc-c
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAE-GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-K 158 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~-~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 158 (262)
.+.++|-.|++.| ++..+++ ....+|++++.+. ...+.....+.. ...++.++.+|+.+.... .
T Consensus 5 ~~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~----------~~~~~~~~~~D~~~~~~~~~ 73 (248)
T PRK07806 5 PGKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEA----------AGGRASAVGADLTDEESVAA 73 (248)
T ss_pred CCcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHh----------cCCceEEEEcCCCCHHHHHH
Confidence 3568998887544 5554443 2333687777653 233333332221 123467788888764321 0
Q ss_pred c----cCCCCCeeEEEEcccccccC---------CCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 159 V----LADDAPFDICSCQFAMHYSW---------STEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 159 ~----~~~~~~fD~V~~~~~l~~~~---------~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
. ...-+..|+|+.+....... .+..-...+++.+...++.+|.+++.
T Consensus 74 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 74 LMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred HHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 0 00114678887665332110 01122345667777776666766543
No 424
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=71.50 E-value=23 Score=29.82 Aligned_cols=89 Identities=16% Similarity=0.072 Sum_probs=51.8
Q ss_pred CeEEEecCCC-CcchHHHHh-cC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 86 DVVLDLACGK-GGDLIKWDK-AK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 86 ~~vLDiGcG~-G~~~~~l~~-~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
.+|+=+|.|- |+.....++ .+ ...++|.|.+...++.+.+.- +.....+..... .
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg----------------v~d~~~~~~~~~------~ 61 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG----------------VIDELTVAGLAE------A 61 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC----------------cccccccchhhh------h
Confidence 4677788774 333333333 33 334789999988877776432 111111111000 2
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li 203 (262)
....|+|+..-- ......+++++...|++|..+.
T Consensus 62 ~~~aD~VivavP-------i~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 62 AAEADLVIVAVP-------IEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred cccCCEEEEecc-------HHHHHHHHHHhcccCCCCCEEE
Confidence 355799986543 3556788888888888877554
No 425
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=71.12 E-value=38 Score=28.45 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=27.7
Q ss_pred CeEEEecCCC-Ccch-HHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 024797 86 DVVLDLACGK-GGDL-IKWDKAKIGYYVGIDIAEGSIEDCRTRY 127 (262)
Q Consensus 86 ~~vLDiGcG~-G~~~-~~l~~~~~~~v~gvD~s~~~~~~a~~~~ 127 (262)
.+|.=+|+|. |.-+ ..++..+ -.|+.+|.+++.++.+.+.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~i 46 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG-YDVTIVDVSEEILKNAMELI 46 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHH
Confidence 4688889985 4333 3333333 37999999999998776544
No 426
>PRK08267 short chain dehydrogenase; Provisional
Probab=70.86 E-value=15 Score=29.88 Aligned_cols=77 Identities=12% Similarity=-0.075 Sum_probs=46.5
Q ss_pred CeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc-c---
Q 024797 86 DVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-K--- 158 (262)
Q Consensus 86 ~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~--- 158 (262)
.++|-.|++.| ++..+++ .....|+.++.+++.++....... ..++.++++|+.+.... .
T Consensus 2 k~vlItGasg~-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~------------~~~~~~~~~D~~~~~~v~~~~~ 68 (260)
T PRK08267 2 KSIFITGAASG-IGRATALLFAAEGWRVGAYDINEAGLAALAAELG------------AGNAWTGALDVTDRAAWDAALA 68 (260)
T ss_pred cEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc------------CCceEEEEecCCCHHHHHHHHH
Confidence 35788887654 4444433 233479999988877666655432 23478889998764311 0
Q ss_pred -ccCC-CCCeeEEEEcccc
Q 024797 159 -VLAD-DAPFDICSCQFAM 175 (262)
Q Consensus 159 -~~~~-~~~fD~V~~~~~l 175 (262)
.... .+++|+|+.+...
T Consensus 69 ~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 69 DFAAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHHHcCCCCCEEEECCCC
Confidence 0001 4578999987654
No 427
>PRK06940 short chain dehydrogenase; Provisional
Probab=70.27 E-value=39 Score=27.96 Aligned_cols=78 Identities=13% Similarity=0.003 Sum_probs=43.8
Q ss_pred eEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc-cc---c
Q 024797 87 VVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-KV---L 160 (262)
Q Consensus 87 ~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~---~ 160 (262)
.+|=.|+| | ++..+++ ....+|+.+|.++..++...+.+.. ...++.++.+|+.+...- .. .
T Consensus 4 ~~lItGa~-g-IG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~----------~~~~~~~~~~Dv~d~~~i~~~~~~~ 71 (275)
T PRK06940 4 VVVVIGAG-G-IGQAIARRVGAGKKVLLADYNEENLEAAAKTLRE----------AGFDVSTQEVDVSSRESVKALAATA 71 (275)
T ss_pred EEEEECCC-h-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh----------cCCeEEEEEeecCCHHHHHHHHHHH
Confidence 45655653 3 5555543 2334799999887666555444331 123467788888654311 00 0
Q ss_pred CCCCCeeEEEEccccc
Q 024797 161 ADDAPFDICSCQFAMH 176 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~ 176 (262)
...+..|+++.+....
T Consensus 72 ~~~g~id~li~nAG~~ 87 (275)
T PRK06940 72 QTLGPVTGLVHTAGVS 87 (275)
T ss_pred HhcCCCCEEEECCCcC
Confidence 1235789999877653
No 428
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=70.20 E-value=20 Score=30.78 Aligned_cols=99 Identities=18% Similarity=0.166 Sum_probs=57.3
Q ss_pred ccCCCeEEEecCCC--CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797 82 ARRGDVVLDLACGK--GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (262)
Q Consensus 82 ~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (262)
.+++++||-.|+.. |.++..+++.....++++--+++-.+.+++... ..-+.+...|+.+- ....
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGA------------d~vi~y~~~~~~~~-v~~~ 206 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGA------------DHVINYREEDFVEQ-VREL 206 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCC------------CEEEcCCcccHHHH-HHHH
Confidence 46789999998544 556667766443367777777766666665433 11122223332111 1111
Q ss_pred cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
. ....+|+|+-.-.- ..+.+..+.|+++|.++..
T Consensus 207 t-~g~gvDvv~D~vG~-----------~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 207 T-GGKGVDVVLDTVGG-----------DTFAASLAALAPGGRLVSI 240 (326)
T ss_pred c-CCCCceEEEECCCH-----------HHHHHHHHHhccCCEEEEE
Confidence 1 23469999864433 3456688889999998764
No 429
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=70.04 E-value=18 Score=30.63 Aligned_cols=41 Identities=22% Similarity=0.102 Sum_probs=28.1
Q ss_pred CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHH
Q 024797 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCR 124 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~ 124 (262)
.+.+|+=+|+|. |..+...++.....|+.+|.++...+.++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~ 192 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT 192 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 578999999986 43344444433348999999987655554
No 430
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=70.01 E-value=25 Score=30.73 Aligned_cols=102 Identities=15% Similarity=0.043 Sum_probs=53.1
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhcCCC-eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC---cccccc
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG---DCYEVH 155 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~---d~~~~~ 155 (262)
...++.+||=.|+|. |..+..+++.... .+++++.+++..+.+++.-. ..-+..... +... .
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~------------~~~v~~~~~~~~~~~~-~ 266 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGA------------DYVFNPTKMRDCLSGE-K 266 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC------------CEEEcccccccccHHH-H
Confidence 345778888887753 3333344443333 69999988876666554211 000000000 1000 0
Q ss_pred cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
..... ....+|+|+....- ....+..+.+.|+++|.++..
T Consensus 267 v~~~~-~g~gvDvvld~~g~---------~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 267 VMEVT-KGWGADIQVEAAGA---------PPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred HHHhc-CCCCCCEEEECCCC---------cHHHHHHHHHHHHcCCEEEEE
Confidence 11111 33468988854221 123466778888999998753
No 431
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.63 E-value=27 Score=29.28 Aligned_cols=104 Identities=14% Similarity=0.026 Sum_probs=54.2
Q ss_pred CeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCC---------CCCeEEEeCcccccc
Q 024797 86 DVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF---------SFPARLICGDCYEVH 155 (262)
Q Consensus 86 ~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~---------~~~v~~~~~d~~~~~ 155 (262)
.+|.=+|+|. |.-+...+......|+.+|.+++.++.+++...+......+.... ..++.+ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~-- 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE-- 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH--
Confidence 3678889885 322222222233379999999999888876542110000000000 011221 222211
Q ss_pred cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (262)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li 203 (262)
.-...|+|+..-. +..+....++.++...++++-.++
T Consensus 81 ------a~~~aDlVieavp-----e~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 81 ------AVKDADLVIEAVP-----EDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred ------HhcCCCEEEEecc-----CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 1134688876432 133556788888888887776553
No 432
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=69.50 E-value=3.7 Score=31.88 Aligned_cols=104 Identities=20% Similarity=0.225 Sum_probs=57.4
Q ss_pred CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
.+.+|.=+|+|. |......++.-..+|+++|.+.......... .+...++.++-
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~------------------~~~~~~l~ell------- 89 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEF------------------GVEYVSLDELL------- 89 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHT------------------TEEESSHHHHH-------
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccc------------------cceeeehhhhc-------
Confidence 688999999986 5555555554444899999998766522221 11223433321
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE----eCChHHHHHHHhh
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT----MPDANVIIKKLRE 218 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~----~~~~~~~~~~~~~ 218 (262)
...|+|++...+. ++...-+=.+..+.+|+|.+||=. +.+.+.+.+.+.+
T Consensus 90 -~~aDiv~~~~plt-----~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 90 -AQADIVSLHLPLT-----PETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp -HH-SEEEE-SSSS-----TTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred -chhhhhhhhhccc-----cccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence 3468888765431 011111224467788887765543 2355667777665
No 433
>PRK10083 putative oxidoreductase; Provisional
Probab=69.13 E-value=29 Score=29.50 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=30.9
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhc--CCCeEEEEeCChhHHHHHHHH
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTR 126 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~ 126 (262)
...++.+||=.|+|. |..+..+++. +...++++|.+++..+.+++.
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~ 205 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES 205 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh
Confidence 456788999999653 3334444442 444688999988888777653
No 434
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=69.11 E-value=36 Score=26.01 Aligned_cols=93 Identities=15% Similarity=0.225 Sum_probs=40.7
Q ss_pred cCCCeEEEecCCCCcchH-HHHhcCCC-eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 83 RRGDVVLDLACGKGGDLI-KWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~-~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
..+.+|.=.|+|....+. .++..... -...+|.++. +... ...+..+.++.-+ .+
T Consensus 66 ~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~-------K~G~--------~~PGt~ipI~~p~--~l------ 122 (160)
T PF08484_consen 66 AEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPL-------KQGK--------YLPGTHIPIVSPE--EL------ 122 (160)
T ss_dssp HTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GG-------GTTE--------E-TTT--EEEEGG--G-------
T ss_pred HcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChh-------hcCc--------ccCCCCCeECCHH--HH------
Confidence 467889999999865443 22222222 3567888762 1110 0001122222222 11
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
.....|+|+. ...+| ...+++.+.+.++.||.+++-+|
T Consensus 123 -~~~~pd~viv-law~y-------~~EI~~~~~~~~~~gg~fi~plP 160 (160)
T PF08484_consen 123 -KERKPDYVIV-LAWNY-------KDEIIEKLREYLERGGKFIVPLP 160 (160)
T ss_dssp --SS--SEEEE-S-GGG-------HHHHHHHTHHHHHTT-EEEE-SS
T ss_pred -hhCCCCEEEE-cChhh-------HHHHHHHHHHHHhcCCEEEEeCC
Confidence 2345688765 33443 46778888888899999998654
No 435
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=69.01 E-value=45 Score=28.40 Aligned_cols=44 Identities=20% Similarity=0.129 Sum_probs=29.2
Q ss_pred ccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHH
Q 024797 82 ARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125 (262)
Q Consensus 82 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~ 125 (262)
..++.+||=.|||. |..+..+++....+++.++.+++..+.+++
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~ 211 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK 211 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 45677787777753 444444544444478999998888777754
No 436
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.73 E-value=20 Score=30.81 Aligned_cols=48 Identities=17% Similarity=0.031 Sum_probs=34.3
Q ss_pred hccCCCeEEEecCC-CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhc
Q 024797 81 YARRGDVVLDLACG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (262)
Q Consensus 81 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~ 128 (262)
...|+.+|--+|.| -|.++..++++-.-+|+++|-+..--+.+-+.+.
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LG 226 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLG 226 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcC
Confidence 34588887777766 4777777876655589999999866666655543
No 437
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=68.64 E-value=30 Score=29.09 Aligned_cols=105 Identities=15% Similarity=0.069 Sum_probs=56.9
Q ss_pred CeEEEecCCC-Cc-chHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccC--------CCCCeEEEeCcccccc
Q 024797 86 DVVLDLACGK-GG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK--------FSFPARLICGDCYEVH 155 (262)
Q Consensus 86 ~~vLDiGcG~-G~-~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~--------~~~~v~~~~~d~~~~~ 155 (262)
.+|--||+|+ |. ....++.. .-.|+..|.+++.++.+.+++...-....+... ...+++ ...|...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~-- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD-- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH--
Confidence 4688889985 33 23333333 337999999999999877664421000000000 001111 1222211
Q ss_pred cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhcc-CCCcEEEEEe
Q 024797 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL-RPGGTFIGTM 206 (262)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L-~~gG~li~~~ 206 (262)
-...|+|+-. +.++.+-...++..+-+.+ +|+..++-++
T Consensus 82 -------~~~~d~ViEa-----v~E~~~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 82 -------FADRQLVIEA-----VVEDEAVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred -------hCCCCEEEEe-----cccCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 1346877643 2345577788889899888 6666555443
No 438
>PLN02256 arogenate dehydrogenase
Probab=68.49 E-value=37 Score=28.92 Aligned_cols=96 Identities=9% Similarity=-0.006 Sum_probs=50.0
Q ss_pred HHhccCCCeEEEecCCC-Cc-chHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc
Q 024797 79 QLYARRGDVVLDLACGK-GG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (262)
Q Consensus 79 ~~~~~~~~~vLDiGcG~-G~-~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 156 (262)
+.......+|.=||+|. |. ++..+.+.+ ..++++|.++. .+.+.+ .. +.. ..+..+.
T Consensus 30 ~~~~~~~~kI~IIG~G~mG~slA~~L~~~G-~~V~~~d~~~~-~~~a~~-~g---------------v~~-~~~~~e~-- 88 (304)
T PLN02256 30 ELEKSRKLKIGIVGFGNFGQFLAKTFVKQG-HTVLATSRSDY-SDIAAE-LG---------------VSF-FRDPDDF-- 88 (304)
T ss_pred hhccCCCCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEECccH-HHHHHH-cC---------------Cee-eCCHHHH--
Confidence 34444567899999875 33 333332222 37999998863 222321 11 221 1222211
Q ss_pred ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHH-HhccCCCcEEEEEeCC
Q 024797 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANV-SALLRPGGTFIGTMPD 208 (262)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~-~~~L~~gG~li~~~~~ 208 (262)
.....|+|+..- +......++.++ ...++++. +++++.+
T Consensus 89 -----~~~~aDvVilav-------p~~~~~~vl~~l~~~~l~~~~-iviDv~S 128 (304)
T PLN02256 89 -----CEEHPDVVLLCT-------SILSTEAVLRSLPLQRLKRST-LFVDVLS 128 (304)
T ss_pred -----hhCCCCEEEEec-------CHHHHHHHHHhhhhhccCCCC-EEEecCC
Confidence 013468887633 234456677777 45566664 6666655
No 439
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=68.21 E-value=28 Score=33.69 Aligned_cols=108 Identities=13% Similarity=0.075 Sum_probs=62.2
Q ss_pred CeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCC--------CCCeEEEeCccccccc
Q 024797 86 DVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF--------SFPARLICGDCYEVHL 156 (262)
Q Consensus 86 ~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~--------~~~v~~~~~d~~~~~~ 156 (262)
.+|--||+|+ |.-+..+.....-.|+.+|.+++.++.+.+++.+.-....+.... ..++++. .|...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--- 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG--- 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH---
Confidence 4688999986 333332222233379999999999999877664211100000000 0112211 12111
Q ss_pred ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (262)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 208 (262)
-...|+|+ +-++++.+-..+++.++-++++|+.+|.-.+..
T Consensus 412 ------~~~aDlVi-----EAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs 452 (737)
T TIGR02441 412 ------FKNADMVI-----EAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA 452 (737)
T ss_pred ------hccCCeeh-----hhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 13457775 333446688899999999999999887765543
No 440
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=68.05 E-value=58 Score=26.08 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=24.3
Q ss_pred CCCeEEEecCCC-CcchH-HHHhcCCCeEEEEeCC
Q 024797 84 RGDVVLDLACGK-GGDLI-KWDKAKIGYYVGIDIA 116 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~-~l~~~~~~~v~gvD~s 116 (262)
...+|+=+|||. |.... .+++.+.++++.+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467899999995 54433 4445678889999887
No 441
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.75 E-value=47 Score=27.81 Aligned_cols=105 Identities=10% Similarity=0.001 Sum_probs=53.5
Q ss_pred eEEEecCCC-Ccc-hHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccC--------CCCCeEEEeCccccccc
Q 024797 87 VVLDLACGK-GGD-LIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK--------FSFPARLICGDCYEVHL 156 (262)
Q Consensus 87 ~vLDiGcG~-G~~-~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~--------~~~~v~~~~~d~~~~~~ 156 (262)
+|.=||+|. |.- ...++..+ ..|+.+|.+++.++.+.++.........+... ...++.+ ..+..+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--- 77 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSG-FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA--- 77 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH---
Confidence 577788875 322 22232233 36999999999999887643210000000000 0001111 112111
Q ss_pred ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
.-...|+|+..-. ++..-...++.++.+.++++..++..+
T Consensus 78 -----~~~~aD~Vi~avp-----e~~~~k~~~~~~l~~~~~~~~il~~~t 117 (288)
T PRK09260 78 -----AVADADLVIEAVP-----EKLELKKAVFETADAHAPAECYIATNT 117 (288)
T ss_pred -----hhcCCCEEEEecc-----CCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 1234688875432 233445677888888888887665543
No 442
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=67.35 E-value=46 Score=25.66 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=22.0
Q ss_pred eEEEecCCC-CcchH-HHHhcCCCeEEEEeCCh
Q 024797 87 VVLDLACGK-GGDLI-KWDKAKIGYYVGIDIAE 117 (262)
Q Consensus 87 ~vLDiGcG~-G~~~~-~l~~~~~~~v~gvD~s~ 117 (262)
+|+=+|||. |.... .+++.+.++++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 478899985 55444 34456787899998875
No 443
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=67.18 E-value=38 Score=28.88 Aligned_cols=97 Identities=22% Similarity=0.158 Sum_probs=51.8
Q ss_pred cCCCeEEEecCCC-CcchHHHHhcCCC-eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-ccccc
Q 024797 83 RRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKV 159 (262)
Q Consensus 83 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~ 159 (262)
.++.+||-.|+|. |..+..+++.... .+++++-+++-.+.+++.-. ..++...-.+. .....
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~---------------~~~~~~~~~~~~~~~~~ 226 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGA---------------DVVINPREEDVVEVKSV 226 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCc---------------ceeeCcccccHHHHHHH
Confidence 4677888877653 4455555554433 68888777766665554211 01111110011 11111
Q ss_pred cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
. +.+.+|+|+..-.- ...+..+.+.|+++|.++..
T Consensus 227 ~-~~~~vd~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 227 T-DGTGVDVVLEMSGN----------PKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred c-CCCCCCEEEECCCC----------HHHHHHHHHHhccCCEEEEE
Confidence 1 33568999853211 12456678889999998754
No 444
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.13 E-value=47 Score=26.97 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=23.5
Q ss_pred CCCeEEEecCCCCcchHHHHhc--CCC-eEEEEeCC
Q 024797 84 RGDVVLDLACGKGGDLIKWDKA--KIG-YYVGIDIA 116 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~~--~~~-~v~gvD~s 116 (262)
....||-.||..|..+..+++. ..+ .|+++--+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~ 41 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARR 41 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccc
Confidence 4568999999999998888762 222 57766443
No 445
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=67.09 E-value=9.8 Score=28.27 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=50.6
Q ss_pred EEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEe-CcccccccccccCCCCC
Q 024797 88 VLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVHLDKVLADDAP 165 (262)
Q Consensus 88 vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~ 165 (262)
|+=+|+|. |.+....+......|+.++-++ .++..++.--.. . .......+.. ........ ....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~--~-----~~~~~~~~~~~~~~~~~~~-----~~~~ 67 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTI--T-----GPDGDETVQPPIVISAPSA-----DAGP 67 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEE--E-----ETTEEEEEEEEEEESSHGH-----HHST
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEE--E-----ecccceecccccccCcchh-----ccCC
Confidence 45577775 4444444434444799999877 555544321100 0 0000000000 00000001 2478
Q ss_pred eeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 166 FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 166 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
+|+|++.--- .+...++..+...+.++..+++..
T Consensus 68 ~D~viv~vKa-------~~~~~~l~~l~~~~~~~t~iv~~q 101 (151)
T PF02558_consen 68 YDLVIVAVKA-------YQLEQALQSLKPYLDPNTTIVSLQ 101 (151)
T ss_dssp ESEEEE-SSG-------GGHHHHHHHHCTGEETTEEEEEES
T ss_pred CcEEEEEecc-------cchHHHHHHHhhccCCCcEEEEEe
Confidence 9999875422 234668888999999997666543
No 446
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=66.68 E-value=37 Score=29.06 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=51.9
Q ss_pred CCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc--ccccc
Q 024797 84 RGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HLDKV 159 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~ 159 (262)
++.+||-.|+|. |..+..+++. +...++.++.+++..+.+.+ +. . ..++...-... .....
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g-------------~-~~~~~~~~~~~~~~~~~~ 239 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA-AG-------------A-DVVVNGSDPDAAKRIIKA 239 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hC-------------C-cEEecCCCccHHHHHHHH
Confidence 677888887653 4444445543 34478899988887777754 22 0 01111110010 00000
Q ss_pred cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~ 204 (262)
..+.+|+|+....- ...+....+.|+++|.++.
T Consensus 240 --~~~~~d~vid~~g~----------~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 240 --AGGGVDAVIDFVNN----------SATASLAFDILAKGGKLVL 272 (350)
T ss_pred --hCCCCcEEEECCCC----------HHHHHHHHHHhhcCCeEEE
Confidence 12268888743221 1346778889999999875
No 447
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=66.50 E-value=15 Score=31.81 Aligned_cols=34 Identities=26% Similarity=0.203 Sum_probs=24.4
Q ss_pred CCCeEEEecCCC-CcchH-HHHhcCCCeEEEEeCCh
Q 024797 84 RGDVVLDLACGK-GGDLI-KWDKAKIGYYVGIDIAE 117 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~-~l~~~~~~~v~gvD~s~ 117 (262)
...+||=+|||. |.... .|++.+.++++.+|.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 467899999995 44333 34456778899999874
No 448
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=66.28 E-value=27 Score=28.61 Aligned_cols=81 Identities=15% Similarity=0.077 Sum_probs=48.6
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc---
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD--- 157 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--- 157 (262)
.+.++|-.|++.| ++..+++ ....+++.++-+++.++...+.+.. .+.++.++.+|+.+....
T Consensus 9 ~~k~~lItGa~~~-iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dl~~~~~~~~~ 77 (265)
T PRK07097 9 KGKIALITGASYG-IGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRE----------LGIEAHGYVCDVTDEDGVQAM 77 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh----------cCCceEEEEcCCCCHHHHHHH
Confidence 5678999998875 4444332 2334688888888766665554431 123477888998654311
Q ss_pred --cccCCCCCeeEEEEcccc
Q 024797 158 --KVLADDAPFDICSCQFAM 175 (262)
Q Consensus 158 --~~~~~~~~fD~V~~~~~l 175 (262)
.....-++.|+++.+...
T Consensus 78 ~~~~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 78 VSQIEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHHHHhCCCCCEEEECCCC
Confidence 000012568999987754
No 449
>PRK07063 short chain dehydrogenase; Provisional
Probab=66.08 E-value=34 Score=27.79 Aligned_cols=83 Identities=12% Similarity=0.030 Sum_probs=49.6
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc-cc
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-KV 159 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 159 (262)
.+.++|-.|++.| .+..+++ ....+|+.++.+++.++...+.+... ....++.++.+|+.+.... ..
T Consensus 6 ~~k~vlVtGas~g-IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~--------~~~~~~~~~~~Dl~~~~~~~~~ 76 (260)
T PRK07063 6 AGKVALVTGAAQG-IGAAIARAFAREGAAVALADLDAALAERAAAAIARD--------VAGARVLAVPADVTDAASVAAA 76 (260)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------cCCceEEEEEccCCCHHHHHHH
Confidence 4678998888765 5554433 23347999998887777666555310 0133477888888664311 00
Q ss_pred ----cCCCCCeeEEEEcccc
Q 024797 160 ----LADDAPFDICSCQFAM 175 (262)
Q Consensus 160 ----~~~~~~fD~V~~~~~l 175 (262)
....+..|+++.+...
T Consensus 77 ~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 77 VAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHHHHhCCCcEEEECCCc
Confidence 0012578999877654
No 450
>PRK12742 oxidoreductase; Provisional
Probab=65.83 E-value=66 Score=25.54 Aligned_cols=106 Identities=15% Similarity=0.067 Sum_probs=52.1
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeC-ChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc-cc
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDI-AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DK 158 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~-s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~ 158 (262)
++.+||=.|++.| .+..+++ ....+++.+.. +++.++...+.. .+.++.+|+.+... ..
T Consensus 5 ~~k~vlItGasgg-IG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~---------------~~~~~~~D~~~~~~~~~ 68 (237)
T PRK12742 5 TGKKVLVLGGSRG-IGAAIVRRFVTDGANVRFTYAGSKDAAERLAQET---------------GATAVQTDSADRDAVID 68 (237)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHh---------------CCeEEecCCCCHHHHHH
Confidence 4678998887654 5554443 23335666644 333333322221 14556677654321 11
Q ss_pred ccCCCCCeeEEEEccccccc---C-CCHHHHHH-----------HHHHHHhccCCCcEEEEE
Q 024797 159 VLADDAPFDICSCQFAMHYS---W-STEARARR-----------ALANVSALLRPGGTFIGT 205 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~---~-~~~~~~~~-----------~l~~~~~~L~~gG~li~~ 205 (262)
.....+.+|+++.+...... . .+.++... ++.++.+.++++|.+++.
T Consensus 69 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i 130 (237)
T PRK12742 69 VVRKSGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIII 130 (237)
T ss_pred HHHHhCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 11123568999877644321 0 12222222 234555666777777653
No 451
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=65.71 E-value=30 Score=25.68 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=27.2
Q ss_pred cCCCeEEEecCCC-Ccc-hHHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 024797 83 RRGDVVLDLACGK-GGD-LIKWDKAKIGYYVGIDIAEGSIEDCRTRY 127 (262)
Q Consensus 83 ~~~~~vLDiGcG~-G~~-~~~l~~~~~~~v~gvD~s~~~~~~a~~~~ 127 (262)
..+.+|+-+|||. |.. ...+...+...++.+|.+++..+...+..
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~ 63 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERF 63 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence 3467899999974 222 22222223357999999887666654443
No 452
>PRK06128 oxidoreductase; Provisional
Probab=65.41 E-value=52 Score=27.60 Aligned_cols=111 Identities=14% Similarity=-0.000 Sum_probs=56.9
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChh--HHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc-
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEG--SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD- 157 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~- 157 (262)
.+.+||-.|++.| ++..+++ .....|+.+..+.+ ..+...+.+.. ...++.++.+|+.+....
T Consensus 54 ~~k~vlITGas~g-IG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dl~~~~~v~ 122 (300)
T PRK06128 54 QGRKALITGADSG-IGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQA----------EGRKAVALPGDLKDEAFCR 122 (300)
T ss_pred CCCEEEEecCCCc-HHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHH----------cCCeEEEEecCCCCHHHHH
Confidence 4678999987654 5555443 22335666655432 22222222221 123467788888764311
Q ss_pred c----ccCCCCCeeEEEEcccccccCC-----CHHHH-----------HHHHHHHHhccCCCcEEEEE
Q 024797 158 K----VLADDAPFDICSCQFAMHYSWS-----TEARA-----------RRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 158 ~----~~~~~~~fD~V~~~~~l~~~~~-----~~~~~-----------~~~l~~~~~~L~~gG~li~~ 205 (262)
. ....-+..|+++.+........ +.++. -.+++.+...++++|.++..
T Consensus 123 ~~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 123 QLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred HHHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 0 0001256899998775432111 12222 23455666667778887664
No 453
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=65.18 E-value=45 Score=28.89 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=29.2
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRT 125 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~ 125 (262)
...++.+||=.|+|. |..+..+++. +...+++++.+++..+.+++
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~ 226 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ 226 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 345788888887753 3333344443 33358899988888887754
No 454
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=64.53 E-value=49 Score=27.68 Aligned_cols=97 Identities=11% Similarity=-0.019 Sum_probs=49.1
Q ss_pred eEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCC
Q 024797 87 VVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165 (262)
Q Consensus 87 ~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 165 (262)
+|+=+|+|. |......+......|+.++.+++.++..++.... .. .........-..+.. +...
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~--~~-------~~~~~~~~~~~~~~~------~~~~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLR--LE-------DGEITVPVLAADDPA------ELGP 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCc--cc-------CCceeecccCCCChh------HcCC
Confidence 578889886 3333322222333699999877666655542110 00 000000000000110 1256
Q ss_pred eeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 166 FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 166 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
+|+|++.--- .+...++..+...+.++..+++.
T Consensus 67 ~d~vila~k~-------~~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 67 QDLVILAVKA-------YQLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred CCEEEEeccc-------ccHHHHHHHHhhhcCCCCEEEEe
Confidence 8988865432 23466788888888777666543
No 455
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=64.49 E-value=70 Score=27.59 Aligned_cols=101 Identities=12% Similarity=0.043 Sum_probs=57.7
Q ss_pred CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (262)
.+.+|.=+|+|. |.-....+.....+|++.|.++..... . +. ...++.+.
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~---~-----------------~~-~~~~l~el-------- 195 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD---F-----------------LT-YKDSVKEA-------- 195 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh---h-----------------hh-ccCCHHHH--------
Confidence 566899999987 443333333334479999988643110 0 11 11122221
Q ss_pred CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE----eCChHHHHHHHhh
Q 024797 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT----MPDANVIIKKLRE 218 (262)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~----~~~~~~~~~~~~~ 218 (262)
-...|+|++.... +.+....+..++...+++|..+|-+ +.|.+.+.+.+..
T Consensus 196 l~~aDiVil~lP~-----t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 196 IKDADIISLHVPA-----NKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred HhcCCEEEEeCCC-----cHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHc
Confidence 1346888765433 2333455667788889988765543 2466777777765
No 456
>PRK05876 short chain dehydrogenase; Provisional
Probab=64.07 E-value=31 Score=28.61 Aligned_cols=81 Identities=9% Similarity=-0.025 Sum_probs=48.0
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc---
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD--- 157 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--- 157 (262)
.+.++|-.|+++| ++..+++ ....+|+.+|.++..++...+.+.. ...++.++.+|+.+....
T Consensus 5 ~~k~vlVTGas~g-IG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~----------~~~~~~~~~~Dv~d~~~v~~~ 73 (275)
T PRK05876 5 PGRGAVITGGASG-IGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRA----------EGFDVHGVMCDVRHREEVTHL 73 (275)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----------cCCeEEEEeCCCCCHHHHHHH
Confidence 4567888887765 5555443 2333688899887766655444431 123477788898664311
Q ss_pred --cccCCCCCeeEEEEcccc
Q 024797 158 --KVLADDAPFDICSCQFAM 175 (262)
Q Consensus 158 --~~~~~~~~fD~V~~~~~l 175 (262)
......+..|+++.+..+
T Consensus 74 ~~~~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 74 ADEAFRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHHHHHcCCCCEEEECCCc
Confidence 000012568999987754
No 457
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.07 E-value=43 Score=27.92 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=54.2
Q ss_pred eEEEecCCC-C-cchHHHHhcCCCeEEEEeCChhHHHHHHHHhcc-------Ccc-ccccccCCCCCeEEEeCccccccc
Q 024797 87 VVLDLACGK-G-GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG-------DAD-HHQRRKKFSFPARLICGDCYEVHL 156 (262)
Q Consensus 87 ~vLDiGcG~-G-~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~~-~~~~~~~~~~~v~~~~~d~~~~~~ 156 (262)
+|-=||+|. | .+...++..+ -.|+++|.+++.++.+.+++.. .+. ..........++.+ ..|..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~---- 78 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAG-YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD---- 78 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH----
Confidence 577788875 2 2333333333 3799999999998766543321 000 00000000001211 22211
Q ss_pred ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
.-...|+|+..- . ++..-...++.++.+.++++..++-.+
T Consensus 79 -----~~~~aDlVi~av-~----e~~~~k~~~~~~l~~~~~~~~il~s~t 118 (282)
T PRK05808 79 -----DLKDADLVIEAA-T----ENMDLKKKIFAQLDEIAKPEAILATNT 118 (282)
T ss_pred -----HhccCCeeeecc-c----ccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 124468887542 1 233455789999999999887764433
No 458
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=64.05 E-value=12 Score=25.40 Aligned_cols=83 Identities=11% Similarity=0.057 Sum_probs=45.1
Q ss_pred EEEecCCCCcchHHHHh----cC--CCeEE-EEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797 88 VLDLACGKGGDLIKWDK----AK--IGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (262)
Q Consensus 88 vLDiGcG~G~~~~~l~~----~~--~~~v~-gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (262)
|-=||||. ++..+++ .+ ..+++ +.+.+++.++...+... +.+...+..+.-
T Consensus 2 I~iIG~G~--mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~---------------~~~~~~~~~~~~----- 59 (96)
T PF03807_consen 2 IGIIGAGN--MGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG---------------VQATADDNEEAA----- 59 (96)
T ss_dssp EEEESTSH--HHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT---------------TEEESEEHHHHH-----
T ss_pred EEEECCCH--HHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc---------------cccccCChHHhh-----
Confidence 33455554 5444443 22 14666 55999998888877654 333332322221
Q ss_pred CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (262)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li 203 (262)
...|+|++.--. .....++.++ ..+.++..++
T Consensus 60 ---~~advvilav~p-------~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 60 ---QEADVVILAVKP-------QQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp ---HHTSEEEE-S-G-------GGHHHHHHHH-HHHHTTSEEE
T ss_pred ---ccCCEEEEEECH-------HHHHHHHHHH-hhccCCCEEE
Confidence 245888865533 3456677777 5555555443
No 459
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=63.85 E-value=52 Score=28.48 Aligned_cols=97 Identities=13% Similarity=0.245 Sum_probs=52.1
Q ss_pred cCCCeEEEecCCC-CcchHHHHhcCCCe-EEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--ccc
Q 024797 83 RRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDK 158 (262)
Q Consensus 83 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~ 158 (262)
.++.+||-.|+|. |..+..+++..... +++++.+++..+.+++ +. . ..++..+-.... +..
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~-~g---~-----------~~v~~~~~~~~~~~l~~ 250 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE-LG---A-----------THTVNAAKEDAVAAIRE 250 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hC---C-----------ceEecCCcccHHHHHHH
Confidence 5677888776542 44444455433334 8999988887777654 22 0 111111111110 000
Q ss_pred ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
.. +...+|+|+....- . ..+..+.+.|+++|.++..
T Consensus 251 ~~-~~~~~d~vld~vg~-------~---~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 251 IT-GGRGVDVVVEALGK-------P---ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred Hh-CCCCCCEEEEeCCC-------H---HHHHHHHHHHhcCCEEEEE
Confidence 11 34568999743211 1 2457778899999998754
No 460
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.79 E-value=23 Score=28.45 Aligned_cols=80 Identities=10% Similarity=0.030 Sum_probs=46.3
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc-c-
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-K- 158 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~- 158 (262)
++.++|-.|++.| ++..+++ ....+|+.+|.++..++.+.+.+.+ ...++.++++|+.+.... .
T Consensus 4 ~~~~~lItG~~g~-iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~----------~~~~~~~~~~D~~~~~~~~~~ 72 (253)
T PRK08217 4 KDKVIVITGGAQG-LGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGA----------LGTEVRGYAANVTDEEDVEAT 72 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----------cCCceEEEEcCCCCHHHHHHH
Confidence 4678998887544 4444433 2333799999988766655554431 133477788887653210 0
Q ss_pred ---ccCCCCCeeEEEEccc
Q 024797 159 ---VLADDAPFDICSCQFA 174 (262)
Q Consensus 159 ---~~~~~~~fD~V~~~~~ 174 (262)
.....+..|.|+.+..
T Consensus 73 ~~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 73 FAQIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 0001256899987754
No 461
>PRK07890 short chain dehydrogenase; Provisional
Probab=63.20 E-value=26 Score=28.39 Aligned_cols=81 Identities=12% Similarity=-0.019 Sum_probs=47.8
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc---
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD--- 157 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--- 157 (262)
.+.+||=.|++.| ++..+++ ....+|++++.++..++...+.+.. ...++.++.+|+.+....
T Consensus 4 ~~k~vlItGa~~~-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------~~~~~~~~~~D~~~~~~~~~~ 72 (258)
T PRK07890 4 KGKVVVVSGVGPG-LGRTLAVRAARAGADVVLAARTAERLDEVAAEIDD----------LGRRALAVPTDITDEDQCANL 72 (258)
T ss_pred CCCEEEEECCCCc-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH----------hCCceEEEecCCCCHHHHHHH
Confidence 4567888887654 5554443 2334799999888766555544331 123477888888654311
Q ss_pred --cccCCCCCeeEEEEcccc
Q 024797 158 --KVLADDAPFDICSCQFAM 175 (262)
Q Consensus 158 --~~~~~~~~fD~V~~~~~l 175 (262)
.....-+..|+|+.+...
T Consensus 73 ~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 73 VALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHcCCccEEEECCcc
Confidence 000012568999887654
No 462
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=63.19 E-value=63 Score=26.77 Aligned_cols=88 Identities=24% Similarity=0.221 Sum_probs=52.3
Q ss_pred CCCeEEEecCC--CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 84 RGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 84 ~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
++.+||=.|++ .|..+..+++.....+++++.+++..+.+++ +. +.....+... .
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g---------------~~~~~~~~~~--~----- 188 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE-LG---------------AAEVVVGGSE--L----- 188 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cC---------------CcEEEecccc--c-----
Confidence 57888888884 3444555555444578999888887777765 32 1100001111 1
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
..+.+|+++-...- ..+....+.|+++|.++..
T Consensus 189 ~~~~~d~vl~~~g~-----------~~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 189 SGAPVDLVVDSVGG-----------PQLARALELLAPGGTVVSV 221 (305)
T ss_pred cCCCceEEEECCCc-----------HHHHHHHHHhcCCCEEEEE
Confidence 22468888743211 1357788899999998753
No 463
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=63.02 E-value=46 Score=26.38 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=24.1
Q ss_pred CCCeEEEecCCC-CcchH-HHHhcCCCeEEEEeCC
Q 024797 84 RGDVVLDLACGK-GGDLI-KWDKAKIGYYVGIDIA 116 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~-~l~~~~~~~v~gvD~s 116 (262)
...+|+-+|||. |.... .+++.+.++++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 467899999985 44333 3445677789999988
No 464
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=63.02 E-value=60 Score=27.65 Aligned_cols=100 Identities=16% Similarity=0.224 Sum_probs=52.2
Q ss_pred ccCCCeEEEecCCC-CcchHHHHhcCC-CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797 82 ARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (262)
Q Consensus 82 ~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (262)
..++.+||=.|+|. |..+..+++... ..+++++.++.....+++.-. ..-+.....+... .....
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~------------~~~v~~~~~~~~~-~i~~~ 230 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGA------------THTVNSAKGDAIE-QVLEL 230 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC------------CceeccccccHHH-HHHHH
Confidence 35677887777643 333334444333 578889988877776654211 0001111111100 00011
Q ss_pred cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
. ....+|+|+-... . ...+..+.+.|+++|.++..
T Consensus 231 ~-~~~~~d~vld~~g------~----~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 231 T-DGRGVDVVIEAVG------I----PATFELCQELVAPGGHIANV 265 (345)
T ss_pred h-CCCCCCEEEECCC------C----HHHHHHHHHhccCCcEEEEe
Confidence 1 3346898874321 1 12467778999999998753
No 465
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=62.59 E-value=72 Score=27.15 Aligned_cols=97 Identities=21% Similarity=0.136 Sum_probs=51.5
Q ss_pred cCCCeEEEecCCC-CcchHHHHhcCCCe-EEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc--cccc
Q 024797 83 RRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HLDK 158 (262)
Q Consensus 83 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~ 158 (262)
.++.+||-.|+|. |..+..+++....+ +++++-++...+.+++.-. ..++...-.++ .+..
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~---------------~~~v~~~~~~~~~~l~~ 224 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGA---------------TYVVNPFKEDVVKEVAD 224 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC---------------cEEEcccccCHHHHHHH
Confidence 4677887776642 43444455544434 8888888777666654211 01111110110 0000
Q ss_pred ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
. .....+|+|+-...- ...+..+.+.|+++|.++..
T Consensus 225 ~-~~~~~~d~vld~~g~----------~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 225 L-TDGEGVDVFLEMSGA----------PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred h-cCCCCCCEEEECCCC----------HHHHHHHHHhhcCCCEEEEE
Confidence 1 133568999753211 13467788889999998664
No 466
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=62.14 E-value=21 Score=30.22 Aligned_cols=59 Identities=14% Similarity=0.076 Sum_probs=48.2
Q ss_pred CeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 143 ~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
+|.+..+|+.++--. .+.+.+|-++...+-.++ +......++.++.+.+.+|..+|+-+
T Consensus 308 RV~ihha~~iE~l~~---k~ag~Vdr~iLlDaqdwm--td~qln~lws~isrta~~gA~VifRt 366 (414)
T COG5379 308 RVAIHHADIIELLAG---KPAGNVDRYILLDAQDWM--TDGQLNSLWSEISRTAEAGARVIFRT 366 (414)
T ss_pred heeeecccHHHHhcc---CCCCCcceEEEecchhhc--ccchHHHHHHHHhhccCCCcEEEEec
Confidence 488889998765321 146889999999998888 66678999999999999999999865
No 467
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=61.70 E-value=56 Score=31.57 Aligned_cols=107 Identities=15% Similarity=0.037 Sum_probs=61.5
Q ss_pred CeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccc--------cCCCCCeEEEeCccccccc
Q 024797 86 DVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR--------KKFSFPARLICGDCYEVHL 156 (262)
Q Consensus 86 ~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~--------~~~~~~v~~~~~d~~~~~~ 156 (262)
.+|.-||+|+ |.-+..++....-.|+.+|.+++.++.+.+++........+. .....++++. .|..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~---- 388 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYA---- 388 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHH----
Confidence 4788999997 443333333333379999999999988776653210000000 0000122221 1211
Q ss_pred ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
.-...|+|+- -+.++.+-.++++.++-++++|+..|.-.+.
T Consensus 389 -----~~~~aDlViE-----av~E~l~~K~~vf~~l~~~~~~~~ilasNTS 429 (715)
T PRK11730 389 -----GFERVDVVVE-----AVVENPKVKAAVLAEVEQKVREDTILASNTS 429 (715)
T ss_pred -----HhcCCCEEEe-----cccCcHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 1234677763 2334668889999999999999977765443
No 468
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=61.34 E-value=86 Score=26.33 Aligned_cols=104 Identities=11% Similarity=0.065 Sum_probs=53.9
Q ss_pred CeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCC--------CCCeEEEeCccccccc
Q 024797 86 DVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF--------SFPARLICGDCYEVHL 156 (262)
Q Consensus 86 ~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~--------~~~v~~~~~d~~~~~~ 156 (262)
.+|-=||+|. |.-+...+......|+++|.+++.++.+++++.+......+.... ...+. ...+...
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~--- 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLEE--- 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHHH---
Confidence 4677788885 332222222233479999999999887665432100000000000 00011 1111111
Q ss_pred ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (262)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~ 204 (262)
-...|+|+..- .++.+....++.++...++++..++.
T Consensus 81 ------~~~aD~Vieav-----~e~~~~k~~v~~~l~~~~~~~~il~s 117 (295)
T PLN02545 81 ------LRDADFIIEAI-----VESEDLKKKLFSELDRICKPSAILAS 117 (295)
T ss_pred ------hCCCCEEEEcC-----ccCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 13458887532 23456677888899988888876653
No 469
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=60.90 E-value=44 Score=28.08 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=21.8
Q ss_pred CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (262)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~ 204 (262)
..+|+|++.--- .....++..+...+.++..++.
T Consensus 67 ~~~d~vilavk~-------~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 67 GPFDLVILAVKA-------YQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred CCCCEEEEEecc-------cCHHHHHHHHHhhcCCCCEEEE
Confidence 568988764422 2346677888888877765443
No 470
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=60.84 E-value=14 Score=31.38 Aligned_cols=42 Identities=12% Similarity=0.022 Sum_probs=29.1
Q ss_pred eEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHH
Q 024797 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARA 185 (262)
Q Consensus 144 v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~ 185 (262)
+.|+++|+.+-......+...++|.|+...++..+-++..++
T Consensus 46 ~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~~VgESv~~P 87 (329)
T COG1087 46 FKFYEGDLLDRALLTAVFEENKIDAVVHFAASISVGESVQNP 87 (329)
T ss_pred CceEEeccccHHHHHHHHHhcCCCEEEECccccccchhhhCH
Confidence 578999998765544344678999999887666554444444
No 471
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=60.74 E-value=74 Score=26.95 Aligned_cols=45 Identities=13% Similarity=0.227 Sum_probs=31.4
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRT 125 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~ 125 (262)
...++.+||=.|+|. |..+..+++. ...++++++-+++..+.+++
T Consensus 159 ~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~ 205 (338)
T PRK09422 159 GIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKE 205 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Confidence 346788999998653 4444455554 24579999999988888854
No 472
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.71 E-value=81 Score=26.44 Aligned_cols=105 Identities=16% Similarity=0.121 Sum_probs=54.2
Q ss_pred CeEEEecCCC-Ccc-hHHHHhcCCCeEEEEeCChhHHHHHHHHhccC-------cccc-ccccCCCCCeEEEeCcccccc
Q 024797 86 DVVLDLACGK-GGD-LIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGD-------ADHH-QRRKKFSFPARLICGDCYEVH 155 (262)
Q Consensus 86 ~~vLDiGcG~-G~~-~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~~~~-~~~~~~~~~v~~~~~d~~~~~ 155 (262)
.+|.=||+|. |.- ...++..+ ..|+.+|.+++.++.+.+...+. +... ........++.+ ..|...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG-YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED-- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH--
Confidence 4688889885 322 22233233 37999999999888765543210 0000 000000011221 122211
Q ss_pred cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (262)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~ 206 (262)
-...|+|+..- .++..-...+++.+...++++..++..+
T Consensus 81 -------~~~aD~Vieav-----pe~~~~k~~~~~~l~~~~~~~~ii~s~t 119 (292)
T PRK07530 81 -------LADCDLVIEAA-----TEDETVKRKIFAQLCPVLKPEAILATNT 119 (292)
T ss_pred -------hcCCCEEEEcC-----cCCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 13568887543 1133445678888999999988766333
No 473
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=60.23 E-value=65 Score=26.90 Aligned_cols=89 Identities=10% Similarity=0.147 Sum_probs=49.7
Q ss_pred eEEEecCCC--CcchHHHHhcC---CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797 87 VVLDLACGK--GGDLIKWDKAK---IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (262)
Q Consensus 87 ~vLDiGcG~--G~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (262)
+|.=||||. +.+...+.+.+ ...+++.|.+++.++.+.+... +.. ..+..+.
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g---------------~~~-~~~~~e~------- 60 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYG---------------ITI-TTNNNEV------- 60 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcC---------------cEE-eCCcHHH-------
Confidence 577789886 22333333332 2359999999877666554322 221 2232221
Q ss_pred CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
-...|+|++.- .+.....++.++...++++ .+++++-
T Consensus 61 -~~~aDiIiLav-------kP~~~~~vl~~l~~~~~~~-~lvISi~ 97 (272)
T PRK12491 61 -ANSADILILSI-------KPDLYSSVINQIKDQIKND-VIVVTIA 97 (272)
T ss_pred -HhhCCEEEEEe-------ChHHHHHHHHHHHHhhcCC-cEEEEeC
Confidence 12348887533 2355677778877777654 5666653
No 474
>PRK07478 short chain dehydrogenase; Provisional
Probab=59.80 E-value=44 Score=27.01 Aligned_cols=81 Identities=12% Similarity=0.023 Sum_probs=48.1
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc---
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD--- 157 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--- 157 (262)
++.++|=.|++.| ++..+++ ....+|+.++-+++.++...+.+... ..++.++.+|+.+....
T Consensus 5 ~~k~~lItGas~g-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~~~~~ 73 (254)
T PRK07478 5 NGKVAIITGASSG-IGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE----------GGEAVALAGDVRDEAYAKAL 73 (254)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------CCcEEEEEcCCCCHHHHHHH
Confidence 3567888887765 5554433 23337899998887766665544311 23477788888664311
Q ss_pred --cccCCCCCeeEEEEcccc
Q 024797 158 --KVLADDAPFDICSCQFAM 175 (262)
Q Consensus 158 --~~~~~~~~fD~V~~~~~l 175 (262)
.....-+..|+++.+...
T Consensus 74 ~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 74 VALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHHHHhcCCCCEEEECCCC
Confidence 111112578999887654
No 475
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=59.53 E-value=25 Score=30.53 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=24.3
Q ss_pred CCCeEEEecCCC-CcchH-HHHhcCCCeEEEEeCC
Q 024797 84 RGDVVLDLACGK-GGDLI-KWDKAKIGYYVGIDIA 116 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~-~l~~~~~~~v~gvD~s 116 (262)
...+||=+|||. |.... .|+..+.++++.+|.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467899999995 44433 4445688899999986
No 476
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=59.47 E-value=66 Score=26.62 Aligned_cols=44 Identities=20% Similarity=0.208 Sum_probs=29.8
Q ss_pred ccCCCeEEEecCC--CCcchHHHHhcCCCeEEEEeCChhHHHHHHH
Q 024797 82 ARRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125 (262)
Q Consensus 82 ~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~ 125 (262)
..++.+||-.||. .|..+..+++.....+++++.+++..+.+++
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 182 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARA 182 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHH
Confidence 4567899999983 3444444554444468999988877777654
No 477
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=59.32 E-value=74 Score=27.11 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=29.7
Q ss_pred ccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHH
Q 024797 82 ARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125 (262)
Q Consensus 82 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~ 125 (262)
..++.+||=.|+|. |..+..+++.....+++++-+++..+.+++
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~ 207 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE 207 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 35677888888653 434444555444578999988888777754
No 478
>PRK07904 short chain dehydrogenase; Provisional
Probab=59.19 E-value=42 Score=27.38 Aligned_cols=82 Identities=10% Similarity=0.055 Sum_probs=48.1
Q ss_pred cCCCeEEEecCCCCcchHHHHh----cCCCeEEEEeCChhH-HHHHHHHhccCccccccccCCCCCeEEEeCccccccc-
Q 024797 83 RRGDVVLDLACGKGGDLIKWDK----AKIGYYVGIDIAEGS-IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL- 156 (262)
Q Consensus 83 ~~~~~vLDiGcG~G~~~~~l~~----~~~~~v~gvD~s~~~-~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~- 156 (262)
..+.+||-.|++.| ++..+++ .+..+|+.++-+++. ++.+.+.+... ...++.++++|+.+...
T Consensus 6 ~~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~---------~~~~v~~~~~D~~~~~~~ 75 (253)
T PRK07904 6 GNPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAA---------GASSVEVIDFDALDTDSH 75 (253)
T ss_pred CCCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhc---------CCCceEEEEecCCChHHH
Confidence 35668999998765 6665554 222478888887664 55444433311 12258888999865431
Q ss_pred ----ccccCCCCCeeEEEEcccc
Q 024797 157 ----DKVLADDAPFDICSCQFAM 175 (262)
Q Consensus 157 ----~~~~~~~~~fD~V~~~~~l 175 (262)
.... ..+..|+++++...
T Consensus 76 ~~~~~~~~-~~g~id~li~~ag~ 97 (253)
T PRK07904 76 PKVIDAAF-AGGDVDVAIVAFGL 97 (253)
T ss_pred HHHHHHHH-hcCCCCEEEEeeec
Confidence 1111 22578988865543
No 479
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=59.00 E-value=76 Score=28.36 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=26.3
Q ss_pred cCCCeEEEecCCC-CcchHHHHh-cCCCeEEEEeCChhHHH
Q 024797 83 RRGDVVLDLACGK-GGDLIKWDK-AKIGYYVGIDIAEGSIE 121 (262)
Q Consensus 83 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~~~ 121 (262)
.++.+|+-+|||. |......+. .+...++.++.+.+...
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~ 218 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAE 218 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence 4678999999975 444444333 34457999999876544
No 480
>PRK05872 short chain dehydrogenase; Provisional
Probab=58.81 E-value=39 Score=28.33 Aligned_cols=80 Identities=13% Similarity=0.161 Sum_probs=47.1
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc---
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD--- 157 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--- 157 (262)
++.+||-.|++.| ++..+++ ....+|+.++.+++.++...+.+.. ...+..+.+|+.+..-.
T Consensus 8 ~gk~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-----------~~~~~~~~~Dv~d~~~v~~~ 75 (296)
T PRK05872 8 AGKVVVVTGAARG-IGAELARRLHARGAKLALVDLEEAELAALAAELGG-----------DDRVLTVVADVTDLAAMQAA 75 (296)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-----------CCcEEEEEecCCCHHHHHHH
Confidence 4678998887765 5554433 2334789999888776665544321 12345556887654210
Q ss_pred --cccCCCCCeeEEEEcccc
Q 024797 158 --KVLADDAPFDICSCQFAM 175 (262)
Q Consensus 158 --~~~~~~~~fD~V~~~~~l 175 (262)
......+..|+|+.+...
T Consensus 76 ~~~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 76 AEEAVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHHHHcCCCCEEEECCCc
Confidence 000012578999987765
No 481
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=58.64 E-value=79 Score=27.29 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=53.7
Q ss_pred ccCCCeEEEecCCC-CcchHHHHhcCCC-eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc--ccc
Q 024797 82 ARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HLD 157 (262)
Q Consensus 82 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~ 157 (262)
..++.+||-.|+|. |..+..+++.... .+++++.++...+.+++ +. . ..++...-... .+.
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~-~g-------------~-~~vv~~~~~~~~~~l~ 244 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR-FG-------------A-THTVNASEDDAVEAVR 244 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-hC-------------C-eEEeCCCCccHHHHHH
Confidence 45778888887753 4444555554333 48999888887776643 22 0 11111111010 000
Q ss_pred cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
.. .+...+|+++....- ...+..+.+.|+++|.++..
T Consensus 245 ~~-~~~~~vd~vld~~~~----------~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 245 DL-TDGRGADYAFEAVGR----------AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred HH-cCCCCCCEEEEcCCC----------hHHHHHHHHHhhcCCeEEEE
Confidence 01 124568988743211 13467788889999998754
No 482
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=58.54 E-value=51 Score=26.72 Aligned_cols=81 Identities=14% Similarity=0.053 Sum_probs=48.6
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc---
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD--- 157 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--- 157 (262)
++.++|=.|+.. ..+..+++ ....+|+.++-+...++...+.+.. ...++.++.+|+.+....
T Consensus 11 ~~k~ilItGa~g-~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~----------~~~~~~~~~~Dl~d~~~i~~~ 79 (259)
T PRK08213 11 SGKTALVTGGSR-GLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA----------LGIDALWIAADVADEADIERL 79 (259)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh----------cCCeEEEEEccCCCHHHHHHH
Confidence 567899998654 35555543 2333799999888776666554431 123477889998764321
Q ss_pred --cccCCCCCeeEEEEcccc
Q 024797 158 --KVLADDAPFDICSCQFAM 175 (262)
Q Consensus 158 --~~~~~~~~fD~V~~~~~l 175 (262)
......+..|.|+.+...
T Consensus 80 ~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 80 AEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHHhCCCCEEEECCCC
Confidence 000012568999887654
No 483
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=58.53 E-value=4 Score=27.93 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=12.1
Q ss_pred EEEecCCCCcchHHHHh
Q 024797 88 VLDLACGKGGDLIKWDK 104 (262)
Q Consensus 88 vLDiGcG~G~~~~~l~~ 104 (262)
-+|||||.|.......+
T Consensus 6 NIDIGcG~GNTmda~fR 22 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFR 22 (124)
T ss_pred ccccccCCCcchhhhhh
Confidence 57999999975554433
No 484
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=58.42 E-value=53 Score=26.54 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=23.2
Q ss_pred CCCeEEEecCCC-CcchH-HHHhcCCCeEEEEeCCh
Q 024797 84 RGDVVLDLACGK-GGDLI-KWDKAKIGYYVGIDIAE 117 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~-~l~~~~~~~v~gvD~s~ 117 (262)
...+|+=+|||. |.... .|+..+.++++.+|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 467899999995 44433 34456788888886543
No 485
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=58.37 E-value=23 Score=30.80 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=33.1
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhcCC-CeEEEEeCChhHHHHHHHH
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTR 126 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~ 126 (262)
...++.+||=.|||. |..+..+++... .+|+++|.+++.++.+++.
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~ 229 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL 229 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh
Confidence 346788999999864 445555555433 3799999999988888653
No 486
>PLN02702 L-idonate 5-dehydrogenase
Probab=58.34 E-value=94 Score=26.81 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=29.3
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRT 125 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~ 125 (262)
...++.+||-.|+|. |..+..+++. +...++.+|.++...+.+++
T Consensus 178 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 224 (364)
T PLN02702 178 NIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ 224 (364)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 345778888887652 4444445443 34458899988877776665
No 487
>PRK05866 short chain dehydrogenase; Provisional
Probab=58.17 E-value=39 Score=28.35 Aligned_cols=81 Identities=12% Similarity=0.001 Sum_probs=48.1
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc-cc
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-KV 159 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 159 (262)
.+.+||=.|++.| ++..+++ ....+|+.++.+.+.++...+.+.+ ....+.++.+|+.+.... ..
T Consensus 39 ~~k~vlItGasgg-IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~----------~~~~~~~~~~Dl~d~~~v~~~ 107 (293)
T PRK05866 39 TGKRILLTGASSG-IGEAAAEQFARRGATVVAVARREDLLDAVADRITR----------AGGDAMAVPCDLSDLDAVDAL 107 (293)
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh----------cCCcEEEEEccCCCHHHHHHH
Confidence 3467888887665 5555443 2334799999988776665554431 122467788888764311 00
Q ss_pred c----CCCCCeeEEEEcccc
Q 024797 160 L----ADDAPFDICSCQFAM 175 (262)
Q Consensus 160 ~----~~~~~fD~V~~~~~l 175 (262)
. ..-+..|+++.+...
T Consensus 108 ~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 108 VADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 0 012578999987644
No 488
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=58.01 E-value=21 Score=30.69 Aligned_cols=45 Identities=29% Similarity=0.416 Sum_probs=33.3
Q ss_pred hccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHH
Q 024797 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~ 125 (262)
...++.+||-.|||. |..+..+++.....++++|.+++.++.+++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 456788999999965 555555555444479999999998888865
No 489
>PRK06196 oxidoreductase; Provisional
Probab=57.86 E-value=47 Score=28.10 Aligned_cols=77 Identities=8% Similarity=-0.006 Sum_probs=46.5
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc---
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD--- 157 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--- 157 (262)
.+.+||=.|++.| ++..+++ ....+|++++-+++.++.+.+.+. .+.++.+|+.+....
T Consensus 25 ~~k~vlITGasgg-IG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~--------------~v~~~~~Dl~d~~~v~~~ 89 (315)
T PRK06196 25 SGKTAIVTGGYSG-LGLETTRALAQAGAHVIVPARRPDVAREALAGID--------------GVEVVMLDLADLESVRAF 89 (315)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh--------------hCeEEEccCCCHHHHHHH
Confidence 4568888887654 5555543 233378899988766555443332 267788888765321
Q ss_pred --cccCCCCCeeEEEEcccc
Q 024797 158 --KVLADDAPFDICSCQFAM 175 (262)
Q Consensus 158 --~~~~~~~~fD~V~~~~~l 175 (262)
......+..|+++.+...
T Consensus 90 ~~~~~~~~~~iD~li~nAg~ 109 (315)
T PRK06196 90 AERFLDSGRRIDILINNAGV 109 (315)
T ss_pred HHHHHhcCCCCCEEEECCCC
Confidence 001012578999987654
No 490
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=57.60 E-value=50 Score=29.56 Aligned_cols=39 Identities=18% Similarity=0.113 Sum_probs=26.6
Q ss_pred cCCCeEEEecCCC-CcchHHHHh-cCCCeEEEEeCChhHHH
Q 024797 83 RRGDVVLDLACGK-GGDLIKWDK-AKIGYYVGIDIAEGSIE 121 (262)
Q Consensus 83 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~~~ 121 (262)
.++.+|+-+|+|. |......+. .+...++.++.+++...
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~ 220 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAE 220 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHH
Confidence 4678999999986 444444333 34457899999876544
No 491
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=57.48 E-value=78 Score=30.57 Aligned_cols=107 Identities=17% Similarity=0.021 Sum_probs=61.9
Q ss_pred CeEEEecCCC-CcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCcccccccc--------CCCCCeEEEeCcccccc
Q 024797 86 DVVLDLACGK-GGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK--------KFSFPARLICGDCYEVH 155 (262)
Q Consensus 86 ~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~--------~~~~~v~~~~~d~~~~~ 155 (262)
.+|.-||+|+ |.-+..+.. ...-.|+.+|.+++.++.+.+++.+.-....+.. ....++++. .|..
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~--- 385 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYR--- 385 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChH---
Confidence 5799999997 433333322 3334799999999999888766542110000000 000122221 1111
Q ss_pred cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (262)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~ 207 (262)
.-...|+|+-. ++++.+-.++++.++-++++|+.+|.-.+.
T Consensus 386 ------~~~~aDlViEa-----v~E~~~~K~~v~~~le~~~~~~~ilasnTS 426 (708)
T PRK11154 386 ------GFKHADVVIEA-----VFEDLALKQQMVAEVEQNCAPHTIFASNTS 426 (708)
T ss_pred ------HhccCCEEeec-----ccccHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 12346777632 334567889999999999999987775543
No 492
>PRK06139 short chain dehydrogenase; Provisional
Probab=57.37 E-value=38 Score=29.13 Aligned_cols=81 Identities=10% Similarity=0.033 Sum_probs=48.1
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc-c-
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-K- 158 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~- 158 (262)
.+.+||=.|++.| ++..+++ ....+|+.++-+++.++...+.+.. .+..+.++.+|+.+...- .
T Consensus 6 ~~k~vlITGAs~G-IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~----------~g~~~~~~~~Dv~d~~~v~~~ 74 (330)
T PRK06139 6 HGAVVVITGASSG-IGQATAEAFARRGARLVLAARDEEALQAVAEECRA----------LGAEVLVVPTDVTDADQVKAL 74 (330)
T ss_pred CCCEEEEcCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh----------cCCcEEEEEeeCCCHHHHHHH
Confidence 4568888888665 4444433 2334789999888877766554431 123466778887653211 0
Q ss_pred ---ccCCCCCeeEEEEcccc
Q 024797 159 ---VLADDAPFDICSCQFAM 175 (262)
Q Consensus 159 ---~~~~~~~fD~V~~~~~l 175 (262)
.....+.+|+++.+...
T Consensus 75 ~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 75 ATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHHHHhcCCCCEEEECCCc
Confidence 00012678999987643
No 493
>PRK06194 hypothetical protein; Provisional
Probab=57.03 E-value=35 Score=28.21 Aligned_cols=81 Identities=9% Similarity=0.008 Sum_probs=46.7
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc-cc
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-KV 159 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 159 (262)
.+.+||=.|++.| .+..+++ ....+|+.+|.+.+.++...+.+.. ...++.++.+|+.+.... ..
T Consensus 5 ~~k~vlVtGasgg-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------~~~~~~~~~~D~~d~~~~~~~ 73 (287)
T PRK06194 5 AGKVAVITGAASG-FGLAFARIGAALGMKLVLADVQQDALDRAVAELRA----------QGAEVLGVRTDVSDAAQVEAL 73 (287)
T ss_pred CCCEEEEeCCccH-HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh----------cCCeEEEEECCCCCHHHHHHH
Confidence 3567887776544 5554433 2334789999887766655444331 023477788998664211 00
Q ss_pred c----CCCCCeeEEEEcccc
Q 024797 160 L----ADDAPFDICSCQFAM 175 (262)
Q Consensus 160 ~----~~~~~fD~V~~~~~l 175 (262)
. ...+..|+|+.+...
T Consensus 74 ~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 74 ADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 0 012468999987755
No 494
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=57.01 E-value=72 Score=25.99 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=24.6
Q ss_pred CCCeEEEecCCC-CcchH-HHHhcCCCeEEEEeCCh
Q 024797 84 RGDVVLDLACGK-GGDLI-KWDKAKIGYYVGIDIAE 117 (262)
Q Consensus 84 ~~~~vLDiGcG~-G~~~~-~l~~~~~~~v~gvD~s~ 117 (262)
...+||=+|||. |.... .|++.+.++++.+|.+.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 467899999984 55444 34457888899888664
No 495
>PRK05854 short chain dehydrogenase; Provisional
Probab=56.96 E-value=57 Score=27.65 Aligned_cols=83 Identities=10% Similarity=-0.053 Sum_probs=49.2
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc---
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD--- 157 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--- 157 (262)
.+.++|-.|++.| ++..+++ ....+|+.++-+.+..+.+.+.+... ....++.++.+|+.+....
T Consensus 13 ~gk~~lITGas~G-IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~--------~~~~~v~~~~~Dl~d~~sv~~~ 83 (313)
T PRK05854 13 SGKRAVVTGASDG-LGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTA--------VPDAKLSLRALDLSSLASVAAL 83 (313)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--------CCCCceEEEEecCCCHHHHHHH
Confidence 4678888888765 5555443 23347888888877666555444310 1123478889998764321
Q ss_pred --cccCCCCCeeEEEEcccc
Q 024797 158 --KVLADDAPFDICSCQFAM 175 (262)
Q Consensus 158 --~~~~~~~~fD~V~~~~~l 175 (262)
......+..|+++.+...
T Consensus 84 ~~~~~~~~~~iD~li~nAG~ 103 (313)
T PRK05854 84 GEQLRAEGRPIHLLINNAGV 103 (313)
T ss_pred HHHHHHhCCCccEEEECCcc
Confidence 011123578999987654
No 496
>PRK06484 short chain dehydrogenase; Validated
Probab=56.89 E-value=94 Score=28.38 Aligned_cols=108 Identities=11% Similarity=0.017 Sum_probs=59.5
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc---
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD--- 157 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--- 157 (262)
.+.++|-.|++.| ++..+++ ....+|+.++.+++.++...+... ..+..+.+|+.+....
T Consensus 268 ~~k~~lItGas~g-IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~~~~~ 333 (520)
T PRK06484 268 SPRVVAITGGARG-IGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG-------------DEHLSVQADITDEAAVESA 333 (520)
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-------------CceeEEEccCCCHHHHHHH
Confidence 4567888887765 5555443 233479999988776666554332 1255677887654311
Q ss_pred --cccCCCCCeeEEEEcccccccC-----CCHHHHH-----------HHHHHHHhccCCCcEEEEE
Q 024797 158 --KVLADDAPFDICSCQFAMHYSW-----STEARAR-----------RALANVSALLRPGGTFIGT 205 (262)
Q Consensus 158 --~~~~~~~~fD~V~~~~~l~~~~-----~~~~~~~-----------~~l~~~~~~L~~gG~li~~ 205 (262)
.....-+..|+++.+....... .+.++.. .+.+.+...++.+|.+++.
T Consensus 334 ~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~i 399 (520)
T PRK06484 334 FAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNL 399 (520)
T ss_pred HHHHHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEE
Confidence 0111126789999876542110 1222222 2244555566677887654
No 497
>PRK06484 short chain dehydrogenase; Validated
Probab=56.73 E-value=1e+02 Score=28.16 Aligned_cols=78 Identities=10% Similarity=-0.068 Sum_probs=46.5
Q ss_pred CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc-c-
Q 024797 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-K- 158 (262)
Q Consensus 84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~- 158 (262)
++.++|=.|++.| .+..+++ ....+|+.++.+.+.++...+... .++.++.+|+.+.... .
T Consensus 4 ~~k~~lITGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~~~~~ 69 (520)
T PRK06484 4 QSRVVLVTGAAGG-IGRAACQRFARAGDQVVVADRNVERARERADSLG-------------PDHHALAMDVSDEAQIREG 69 (520)
T ss_pred CCeEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-------------CceeEEEeccCCHHHHHHH
Confidence 4668888888876 5555443 233478999988776665544332 2356778887654210 0
Q ss_pred ---ccCCCCCeeEEEEcccc
Q 024797 159 ---VLADDAPFDICSCQFAM 175 (262)
Q Consensus 159 ---~~~~~~~fD~V~~~~~l 175 (262)
.....+..|+++.+...
T Consensus 70 ~~~~~~~~g~iD~li~nag~ 89 (520)
T PRK06484 70 FEQLHREFGRIDVLVNNAGV 89 (520)
T ss_pred HHHHHHHhCCCCEEEECCCc
Confidence 00012578999887654
No 498
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=56.50 E-value=16 Score=31.97 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=47.8
Q ss_pred hccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797 81 YARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (262)
Q Consensus 81 ~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (262)
.+.++.+|+|..|-.|.-+..++. ...+++.|+|.+++-++..++.+...+. ..++...+|+...
T Consensus 210 ~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~---------~~~~~~~~df~~t 276 (413)
T KOG2360|consen 210 DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV---------SIVESVEGDFLNT 276 (413)
T ss_pred CCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC---------CccccccccccCC
Confidence 456789999999999998887765 3567899999999888887776653332 2255557776653
No 499
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=55.99 E-value=85 Score=26.59 Aligned_cols=98 Identities=14% Similarity=0.162 Sum_probs=51.7
Q ss_pred ccCCCeEEEecCCC-CcchHHHHhcCC-CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc-cccccc
Q 024797 82 ARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY-EVHLDK 158 (262)
Q Consensus 82 ~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~~~~ 158 (262)
..++.+||=.|+|. |..+..+++... .++++++-+++..+.+++ +. . ..++..+-. ...+..
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~-~g---~-----------~~~~~~~~~~~~~i~~ 229 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER-LG---A-----------DHVLNASDDVVEEVRE 229 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH-hC---C-----------cEEEcCCccHHHHHHH
Confidence 35678899988653 323333444333 578889888877766643 21 0 011111100 000100
Q ss_pred ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (262)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~ 205 (262)
.. +...+|+|+..-.- ...+..+.+.|+++|.++..
T Consensus 230 ~~-~~~~~dvvld~~g~----------~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 230 LT-GGRGADAVIDFVGS----------DETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred Hh-CCCCCCEEEEcCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 10 23468999743211 13457778888999998753
No 500
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=55.90 E-value=72 Score=26.96 Aligned_cols=42 Identities=17% Similarity=0.103 Sum_probs=26.3
Q ss_pred CCCeEEEe--cCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHH
Q 024797 84 RGDVVLDL--ACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125 (262)
Q Consensus 84 ~~~~vLDi--GcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~ 125 (262)
++.++|=+ |+|. |..+..+++....++++++.+++..+.+++
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~ 186 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK 186 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 34455544 4443 445555555444479999999888877765
Done!