Query 024799
Match_columns 262
No_of_seqs 132 out of 174
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 14:37:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tqz_A Necap1; endocytosis, st 100.0 9E-71 3.1E-75 458.1 6.4 131 5-136 3-133 (133)
2 1qc6_A EVH1 domain from ENA/VA 94.4 0.086 2.9E-06 42.6 6.5 102 10-132 3-111 (130)
3 1rrp_B Nuclear pore complex pr 91.4 1.3 4.3E-05 35.8 9.2 107 9-129 20-131 (134)
4 3n7c_A ABR034WP; nuclear pore 90.8 2.6 8.9E-05 34.1 10.6 109 10-132 10-121 (130)
5 1k5d_B RAN-specific GTPase-act 90.8 1.6 5.4E-05 38.1 9.8 116 10-137 45-166 (201)
6 1xke_A RAN-binding protein 2; 84.3 14 0.00049 29.4 11.2 108 10-131 7-119 (130)
7 2cay_A VPS36 PH domain, vacuol 79.3 12 0.00042 30.7 9.1 104 10-137 29-139 (145)
8 2crf_A RAN binding protein 3; 78.8 26 0.00088 28.8 11.1 109 10-135 26-141 (150)
9 1i2h_A PSD-ZIP45(homer-1C/VESL 78.5 17 0.00059 30.9 10.0 112 10-139 8-121 (168)
10 2y8g_A Ranbp3-B, RAN-binding p 77.0 24 0.00082 28.5 10.2 113 10-139 14-133 (138)
11 3m1i_B RAN-specific GTPase-act 74.9 41 0.0014 29.1 11.6 110 10-133 73-188 (191)
12 1ddw_A GLGF-domain protein hom 73.0 26 0.0009 27.9 9.3 111 10-138 3-115 (120)
13 1egx_A VAsp, vasodilator-stimu 64.1 48 0.0016 26.0 8.9 103 10-133 3-113 (115)
14 1mke_A WIP - N-WAsp, fusion pr 63.0 17 0.00059 30.3 6.5 81 36-129 57-139 (152)
15 4hat_B RAN-specific GTPase-act 62.0 63 0.0021 26.3 11.2 111 9-133 21-137 (140)
16 1nkw_Y 50S ribosomal protein L 61.8 4.9 0.00017 30.0 2.6 49 8-58 8-56 (73)
17 2lyd_A Decapping protein 1; DC 59.5 48 0.0016 26.9 8.4 102 6-128 25-129 (134)
18 2ifs_A N-WAsp, wiskott-aldrich 56.4 15 0.00052 31.1 5.1 81 36-129 74-156 (169)
19 3f1f_4 50S ribosomal protein L 51.4 12 0.00042 29.4 3.4 50 8-59 34-83 (97)
20 2ec1_A Nucleoporin 50 kDa; ran 49.0 71 0.0024 25.3 7.7 81 46-130 35-123 (125)
21 2qkl_A DCP1 protein, SPBC3B9.2 48.2 1.1E+02 0.0036 24.7 10.3 95 6-121 20-116 (127)
22 2jp2_A Spred-2, sprouty-relate 47.4 41 0.0014 27.0 6.1 69 55-133 56-124 (126)
23 1wia_A Hypothetical ubiquitin- 37.0 42 0.0014 24.3 4.3 18 157-174 62-79 (95)
24 3v2d_4 50S ribosomal protein L 36.5 17 0.00059 27.0 2.0 50 8-59 8-57 (71)
25 1p3r_A Disabled homolog 2; PTB 33.5 1.6E+02 0.0053 23.8 7.6 76 46-131 61-136 (160)
26 3efy_A CIF (cell cycle inhibit 33.5 27 0.00092 30.3 3.0 22 88-109 48-69 (195)
27 1xod_A Spred1; sprouty, EVH1, 31.0 95 0.0032 24.4 5.7 67 55-131 47-113 (118)
28 1evh_A WH1 domain, protein (ME 30.3 86 0.0029 24.4 5.3 104 10-132 3-110 (112)
29 4fbj_A CIF, hypothetical prote 29.8 33 0.0011 31.0 3.1 23 87-109 115-137 (261)
30 1n7v_A Adsorption protein P2; 29.2 24 0.00082 33.8 2.1 64 46-113 296-373 (555)
31 4f8c_A Cycle inhibiting factor 28.1 36 0.0012 30.9 3.0 22 88-109 142-163 (275)
32 3eir_A Putative ATP/GTP bindin 26.7 39 0.0013 30.6 3.0 29 88-116 146-175 (281)
33 1gcq_C VAV proto-oncogene; SH3 26.0 30 0.001 23.5 1.7 15 158-172 26-40 (70)
34 2a28_A BZZ1 protein; SH3 domai 24.6 49 0.0017 21.3 2.5 16 158-173 16-31 (54)
35 2g6f_X RHO guanine nucleotide 23.3 37 0.0013 22.3 1.7 15 158-172 20-34 (59)
36 2lx7_A GAS-7, growth arrest-sp 23.3 47 0.0016 23.0 2.3 13 158-170 20-32 (60)
37 2bz8_A SH3-domain kinase bindi 22.8 39 0.0013 22.1 1.7 15 158-172 17-31 (58)
38 1k1z_A VAV; SH3, proto-oncogen 22.7 38 0.0013 23.6 1.8 16 157-172 33-48 (78)
39 2lj0_A Sorbin and SH3 domain-c 22.6 38 0.0013 23.6 1.7 14 158-171 22-35 (65)
40 1g2b_A Spectrin alpha chain; c 22.2 55 0.0019 21.8 2.4 15 158-172 37-51 (62)
41 2jte_A CD2-associated protein; 22.2 40 0.0014 22.5 1.7 15 158-172 22-36 (64)
42 1jo8_A ABP1P, actin binding pr 22.1 58 0.002 21.3 2.5 15 158-172 16-30 (58)
43 4e6r_A Cytoplasmic protein NCK 21.7 60 0.0021 20.9 2.5 15 158-172 17-31 (58)
44 3f0w_A NUMB-R, NUMB-like prote 21.7 3.2E+02 0.011 22.0 7.5 71 59-133 88-159 (168)
45 2xmf_A Myosin 1E SH3; motor pr 21.6 42 0.0015 22.1 1.7 15 158-172 21-35 (60)
46 2wtp_A ORF131 protein, CZCE; m 21.5 22 0.00076 29.3 0.3 18 159-176 73-90 (131)
47 2x3w_D Syndapin I, protein kin 21.5 60 0.0021 21.2 2.5 14 158-171 19-32 (60)
48 1uti_A GRB2-related adaptor pr 21.5 61 0.0021 21.1 2.5 15 158-172 17-31 (58)
49 1tuc_A Alpha-spectrin; capping 21.4 43 0.0015 22.5 1.8 16 158-173 5-20 (63)
50 1tg0_A BBC1 protein, myosin ta 21.2 43 0.0015 22.7 1.7 14 158-171 23-36 (68)
51 2kxd_A 11-MER peptide, SH3 dom 21.2 43 0.0015 23.1 1.8 15 158-172 15-29 (73)
52 1oot_A Hypothetical 40.4 kDa p 21.1 62 0.0021 21.2 2.5 15 158-172 19-33 (60)
53 2gnc_A SLIT-ROBO RHO GTPase-ac 21.1 44 0.0015 22.1 1.7 15 158-172 22-36 (60)
54 1k4u_S Phagocyte NADPH oxidase 21.0 44 0.0015 22.2 1.7 15 158-172 21-35 (62)
55 1zuy_A Myosin-5 isoform; SH3 d 20.4 47 0.0016 21.5 1.7 15 158-172 17-31 (58)
56 2bzy_A CRK-like protein, CRKL 20.2 46 0.0016 22.6 1.7 15 158-172 19-33 (67)
57 2kxc_A Brain-specific angiogen 20.2 47 0.0016 22.4 1.7 14 158-171 23-36 (67)
58 2j6f_A CD2-associated protein; 20.2 47 0.0016 22.1 1.7 15 158-172 17-31 (62)
59 2drm_A Acanthamoeba myosin IB; 20.1 68 0.0023 20.8 2.5 15 158-172 19-33 (58)
60 1wyx_A CRK-associated substrat 20.1 47 0.0016 22.5 1.7 15 158-172 19-33 (69)
61 3rnj_A Brain-specific angiogen 20.0 47 0.0016 22.4 1.7 14 158-171 24-37 (67)
No 1
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=100.00 E-value=9e-71 Score=458.14 Aligned_cols=131 Identities=51% Similarity=0.859 Sum_probs=123.6
Q ss_pred cccceeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeCCeEEEEEecCCCCceeeeeeccCCCCCCc
Q 024799 5 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENS 84 (262)
Q Consensus 5 ~~~~iE~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~~~iwtGRLrVv~~g~~~~I~LeD~~tGeLFA~cpv~pg~~~~a 84 (262)
.+++||+|||++++||||+|||++|++||||+||++++|||||||||+++|++|.|+|||++||+|||+|||.. ....+
T Consensus 3 ~~~~~E~vL~v~~ev~VY~IPP~~s~~GyrA~dW~~~~~~wtGrlrv~~~g~~~~I~LeD~~tGeLFA~cPv~~-~~~~~ 81 (133)
T 1tqz_A 3 AELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQ-YPGIA 81 (133)
T ss_dssp CSCCCSCCCBCCSSEEEEECCSCCSSSSCCHHHHCCSSSCEEEEEEEECCSSSEEEEEECSSCCSSCEEEEECS-SCCCC
T ss_pred cccceeEEEEEcCcEEEEecCCCCCCCCcccccCCCCCceeEEEEEEEEeCCEEEEEEEeCCCCcEEEeCcccC-CCCcc
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999932 12379
Q ss_pred eeEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHHHHHh
Q 024799 85 VETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRE 136 (262)
Q Consensus 85 VE~V~DSSRYFVLRV~D~~Gr~AfIGiGF~eRsdAFDFnvaLqD~~K~l~r~ 136 (262)
||+|+||||||||||+|++||||||||||+||+||||||||||||+||++++
T Consensus 82 VE~v~DSSRYFVlRv~d~~gr~AfiGiGF~eR~dAFDF~vaLqd~~k~~~~~ 133 (133)
T 1tqz_A 82 VETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQE 133 (133)
T ss_dssp EEECTTCCSCEEEEEEETTTEEEEEEEECSCHHHHHHHHHHHHHHHSCSSCC
T ss_pred eEEeecCcCeEEEEEECCCCcEEEEeeeecccccccchHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999763
No 2
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=94.43 E-value=0.086 Score=42.61 Aligned_cols=102 Identities=15% Similarity=0.246 Sum_probs=71.4
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeE-----EEEEEEeCCeEEEEEecC--CCCceeeeeeccCCCCC
Q 024799 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTG-----RLRVVSCKDRCEIRLEDP--NSGELFAACFVQPGQRE 82 (262)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~~~iwtG-----RLrVv~~g~~~~I~LeD~--~tGeLFA~cpv~pg~~~ 82 (262)
|.+|+.. .++||.+=|.+ + .|. +.-+| ++.|......-.+||.|- .++.+=..|.++++
T Consensus 3 E~~i~~~-~A~V~~~d~~~--~-----~W~---~~g~G~~~l~~V~i~~~~~~~~~Riv~~~~~~~~vi~n~~i~~~--- 68 (130)
T 1qc6_A 3 EQSICQA-RASVMVYDDTS--K-----KWV---PIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQQVVINYSIVKG--- 68 (130)
T ss_dssp CEEEEEE-EEEEEEEETTT--T-----EEE---ECC-----CEEEEEEEETTTTEEEEEEECTTTCCEEEEEECCTT---
T ss_pred ceeEEEE-EEEEEEECCCC--C-----cee---ECCCCceeeeEEEEEecCCCcEEEEEEEeCCCCeEEEeeEEeCC---
Confidence 5566654 45666664532 2 274 33466 788888777888999986 57788889988876
Q ss_pred CceeEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHH
Q 024799 83 NSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKY 132 (262)
Q Consensus 83 ~aVE~V~DSSRYFVLRV~D~~Gr~AfIGiGF~eRsdAFDFnvaLqD~~K~ 132 (262)
.+-.-++.+|..-+.. ...+||.|.+-.||=-|.-++++..+.
T Consensus 69 --~~y~~~~~~Fh~w~~~-----~~~~GL~F~se~eA~~F~~~~~~al~~ 111 (130)
T 1qc6_A 69 --LKYNQATPTFHQWRDA-----RQVYGLNFASKEEATTFSNAMLFALNI 111 (130)
T ss_dssp --CEEEEEETTEEEEECS-----SCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred --cEEeccCCeeEEEEcC-----CEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 3444488888888633 369999999999999999888876443
No 3
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=91.38 E-value=1.3 Score=35.79 Aligned_cols=107 Identities=16% Similarity=0.284 Sum_probs=78.4
Q ss_pred eeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEe--CCeEEEEEecCCCCceeeeeeccCCCCCCcee
Q 024799 9 LEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSC--KDRCEIRLEDPNSGELFAACFVQPGQRENSVE 86 (262)
Q Consensus 9 iE~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~~~iwtGRLrVv~~--g~~~~I~LeD~~tGeLFA~cpv~pg~~~~aVE 86 (262)
=|.+||-.+ |-+|+.=.- ..+|. .-=+|.|||... ..++-|.+-...+|.|-+.+++.|+- .+.
T Consensus 20 ~E~~lf~~r-aKL~~~~~~-------~~~Wk---erG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m---~~~ 85 (134)
T 1rrp_B 20 DEEEFFCNR-AKLFRFDVE-------SKEWK---ERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDM---KLT 85 (134)
T ss_dssp SEEEEEEEE-EEEEEECSS-------SSCEE---EEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCSSC---CCB
T ss_pred CeEEEEEEE-EEEEEEccc-------CCCcc---cCcEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecCCc---eEe
Confidence 356777755 677776321 13463 233799999874 45777777776799999999998873 567
Q ss_pred EeccccceEEEEEec---CCCCeEEEeeeecccCcccchhhhhhhH
Q 024799 87 TVLDSSRYFVLKIED---GTGKHAFIGLGFNERNEAFDFNVALSDH 129 (262)
Q Consensus 87 ~V~DSSRYFVLRV~D---~~Gr~AfIGiGF~eRsdAFDFnvaLqD~ 129 (262)
+...|.+.++.-..| +.++...+.|=|..-.+|=.|..++.++
T Consensus 86 ~~~~s~~~~~~~~~d~~d~~~k~~~~~irfk~~e~A~~f~~~~~e~ 131 (134)
T 1rrp_B 86 PNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEA 131 (134)
T ss_dssp CSTTCTTEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHT
T ss_pred ecCCCCeEEEEEcccccCCCCceEEEEEEECCHHHHHHHHHHHHHH
Confidence 777788988887775 3456778899999888888888888765
No 4
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=90.85 E-value=2.6 Score=34.09 Aligned_cols=109 Identities=10% Similarity=0.103 Sum_probs=73.5
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC---CeEEEEEecCCCCceeeeeeccCCCCCCcee
Q 024799 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK---DRCEIRLEDPNSGELFAACFVQPGQRENSVE 86 (262)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~~~iwtGRLrVv~~g---~~~~I~LeD~~tGeLFA~cpv~pg~~~~aVE 86 (262)
|.+||..+ |-+|+.=+- + ..|. .-=+|-|||.... .++-|.+-...+|.|-+.++|.|+ -.+.
T Consensus 10 E~~lf~~r-aKL~~f~~~--~-----~~Wk---erG~G~lkil~~k~~~~k~RllmR~d~~~kv~lN~~i~~~---m~~~ 75 (130)
T 3n7c_A 10 EEVLFCEK-AKLLIFDSD--T-----KGYT---SRGVGELKLLRKKDDKGKVRVLCRSEGMGHVLLNTSVVKS---FKYQ 75 (130)
T ss_dssp CEEEEEEE-EEEEEECC----------CEE---EEEEEEEEEEEETTEEEEEEEEEEC-CCCCEEEEEECCTT---BCCE
T ss_pred eeEEEEEE-EEEEEEeCC--C-----CCch---hcceEEEEEEEecCCCCEEEEEEEecCCceEEeeccccCC---cEEe
Confidence 56777755 677776321 2 2453 2227999998754 356666666668999999999887 3567
Q ss_pred EeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHH
Q 024799 87 TVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKY 132 (262)
Q Consensus 87 ~V~DSSRYFVLRV~D~~Gr~AfIGiGF~eRsdAFDFnvaLqD~~K~ 132 (262)
+...|.+-||--....+|.-....|=|..=.+|=.|.-+++++.+-
T Consensus 76 ~~~~~~~~~v~~~~~~dgk~~~~~lrfks~e~A~~f~~~iee~~~~ 121 (130)
T 3n7c_A 76 PIDADNENLIKWPIITDGKLETFIIKVKQKADGRRLVGAVADAQQA 121 (130)
T ss_dssp ESCTTCTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCccEEEEEecCCCceEEEEEEECCHHHHHHHHHHHHHHHhh
Confidence 7765555554322113467778899999999999999999988654
No 5
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=90.78 E-value=1.6 Score=38.10 Aligned_cols=116 Identities=16% Similarity=0.309 Sum_probs=83.4
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC--CeEEEEEecCCCCceeeeeeccCCCCCCceeE
Q 024799 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK--DRCEIRLEDPNSGELFAACFVQPGQRENSVET 87 (262)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~~~iwtGRLrVv~~g--~~~~I~LeD~~tGeLFA~cpv~pg~~~~aVE~ 87 (262)
|.+||-++ |-+|+.-+-..+ ..|. .-=+|-|||.... .++.|.+--..++.|-+.++|.|+- .+.+
T Consensus 45 Ee~lf~~R-aKLf~f~~d~~~-----~~WK---ERGvG~lkIlk~k~t~k~RlvMR~d~~~kV~LN~~I~~~m---~~~~ 112 (201)
T 1k5d_B 45 EEELFKMR-AKLFRFASENDL-----PEWK---ERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMM---ELKP 112 (201)
T ss_dssp CCCSEEEE-EEEEEECCTTSS-----CCEE---EEEEEEEEEEECSSSCCEEEEEEETTTCCEEEEEECCSSC---CCCB
T ss_pred ceEEEEEe-eeEEEecccccC-----CCcc---ccceEEEEEEEcCCCCcEEEEEEECCcceEEEeeEecCCc---eeee
Confidence 56777765 788887443222 2463 2236899999653 5777777766789999999998873 5666
Q ss_pred eccccceEEEEE-ec---CCCCeEEEeeeecccCcccchhhhhhhHHHHHHHhh
Q 024799 88 VLDSSRYFVLKI-ED---GTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRREL 137 (262)
Q Consensus 88 V~DSSRYFVLRV-~D---~~Gr~AfIGiGF~eRsdAFDFnvaLqD~~K~l~r~~ 137 (262)
..-|.|.||.-+ .| +.++--.+-|=|..=.+|=.|..+++++.+-++...
T Consensus 113 ~~~s~ks~v~~~~~d~ad~~~k~e~~~iRfks~e~A~~f~~~~ee~k~~~~~~~ 166 (201)
T 1k5d_B 113 NAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEERE 166 (201)
T ss_dssp CSSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCceEEEEeccccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHHHhhh
Confidence 667788888865 55 233556788889888889999999999988776543
No 6
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=84.27 E-value=14 Score=29.43 Aligned_cols=108 Identities=15% Similarity=0.294 Sum_probs=77.1
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC--CeEEEEEecCCCCceeeeeeccCCCCCCceeE
Q 024799 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK--DRCEIRLEDPNSGELFAACFVQPGQRENSVET 87 (262)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~~~iwtGRLrVv~~g--~~~~I~LeD~~tGeLFA~cpv~pg~~~~aVE~ 87 (262)
|.+||.++ |-+|+.=.- + .+|. .-=+|-|||.... .++-|.+-...++.|-+.++|.|+ -.+.+
T Consensus 7 E~~l~~~r-aKL~~~~~~--~-----~~Wk---ERG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~---m~~~~ 72 (130)
T 1xke_A 7 EKVLYSQR-VKLFRFDAE--V-----SQWK---ERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTT---MNLKP 72 (130)
T ss_dssp EEEEEEEE-EEEEEEETT--T-----TEEE---EEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCTT---SCEEE
T ss_pred eEEEEEEE-EEEEEEcCC--C-----CCcc---cCcEEEEEEEEcCCCCeEEEEEEEcCCCeEEEecEeCCC---cEEee
Confidence 56777765 566665221 1 2463 2336899999663 567777776668999999999887 35777
Q ss_pred eccccceEEEEEec---CCCCeEEEeeeecccCcccchhhhhhhHHH
Q 024799 88 VLDSSRYFVLKIED---GTGKHAFIGLGFNERNEAFDFNVALSDHEK 131 (262)
Q Consensus 88 V~DSSRYFVLRV~D---~~Gr~AfIGiGF~eRsdAFDFnvaLqD~~K 131 (262)
..-|.+.|+....| +.++-....|=|..=.+|=.|..++.++.+
T Consensus 73 ~~~s~~~~~~~~~d~~d~~~~~~~~~irfks~e~a~~f~~~~ee~k~ 119 (130)
T 1xke_A 73 LSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQR 119 (130)
T ss_dssp CTTCSSCEEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEecccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 76677777776554 345678889999888889999999888754
No 7
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=79.28 E-value=12 Score=30.69 Aligned_cols=104 Identities=19% Similarity=0.194 Sum_probs=60.8
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeCCeEEEEEecCCCCc-eeeeeeccCCCCCCceeEe
Q 024799 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGE-LFAACFVQPGQRENSVETV 88 (262)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~~~iwtGRLrVv~~g~~~~I~LeD~~tGe-LFA~cpv~pg~~~~aVE~V 88 (262)
|++|++.+.|.+|.=. ++...++ .|+|-++.. ++ -..|....+ .--..|+. .|..|
T Consensus 29 E~il~~~d~V~Ly~g~-------~k~~~~k------~G~lyLTsh--RI--Iyv~~~~~~~~SfslPL~------~v~~~ 85 (145)
T 2cay_A 29 EKDIFIDQSVGLYHGK-------SKILQRQ------RGRIFLTSQ--RI--IYIDDAKPTQNSLGLELD------DLAYV 85 (145)
T ss_dssp CCEEEEEEEEEEEETT-------EECTTCS------SEEEEEESS--EE--EEEESSCHHHHCEEEEGG------GEEEE
T ss_pred CEEEEEcCCcceecCC-------CCCcCCC------ccEEEEEcC--eE--EEecCCCCcceEEEeEhH------heeee
Confidence 7899999999999722 2222333 677766543 21 222333333 11233542 23333
Q ss_pred ccccceE------EEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHHHHHhh
Q 024799 89 LDSSRYF------VLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRREL 137 (262)
Q Consensus 89 ~DSSRYF------VLRV~D~~Gr~AfIGiGF~eRsdAFDFnvaLqD~~K~l~r~~ 137 (262)
-=++.+| +|+++-+.-..+++-|-|.+-+. +||.-+|++..+-..+|+
T Consensus 86 e~~~~~fg~s~Ki~l~~~p~~~~~~~~KLsFk~GGa-~eF~~~l~~al~~~~~~~ 139 (145)
T 2cay_A 86 NYSSGFLTRSPRLILFFKDPSSSTEFVQLSFRKSDG-VLFSQATERALENILTEK 139 (145)
T ss_dssp EEECSSSSSSCEEEEEESSCSSTTCCEEEEESSSCC-HHHHHHHHHHHHHHHHC-
T ss_pred eEEcCccccCceEEEEecCCCCCceEEEEEEcCCCc-hHHHHHHHHHHHHHHHhh
Confidence 3333333 45555444467999999999776 999999998765554443
No 8
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=78.76 E-value=26 Score=28.76 Aligned_cols=109 Identities=13% Similarity=0.158 Sum_probs=71.6
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC------CeEEEEEecCCCCceeeeeeccCCCCCC
Q 024799 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK------DRCEIRLEDPNSGELFAACFVQPGQREN 83 (262)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~~~iwtGRLrVv~~g------~~~~I~LeD~~tGeLFA~cpv~pg~~~~ 83 (262)
|.+||-++ |-+|+.=. . ..+|. .-=+|-|||.... .++-|.+-...++.|-+.++|.|+-
T Consensus 26 E~~l~~~r-aKL~~fd~--~-----~~~Wk---ERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m--- 91 (150)
T 2crf_A 26 ESNVLQMQ-CKLFVFDK--T-----SQSWV---ERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQM--- 91 (150)
T ss_dssp CEEEEEEE-EEEEEEET--T-----TTEEE---EEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEECCTTC---
T ss_pred eEEEEEEE-eEEEEEcC--C-----CCCcc---cceeEEEEEEeccccCCCCccEEEEEEEcCcceEEeeeeccCCc---
Confidence 56777764 66666521 1 22453 2237999999753 3566666666689999999998873
Q ss_pred ceeEeccccceEEEEEecC-CCCeEEEeeeecccCcccchhhhhhhHHHHHHH
Q 024799 84 SVETVLDSSRYFVLKIEDG-TGKHAFIGLGFNERNEAFDFNVALSDHEKYVRR 135 (262)
Q Consensus 84 aVE~V~DSSRYFVLRV~D~-~Gr~AfIGiGF~eRsdAFDFnvaLqD~~K~l~r 135 (262)
.++. -|.+++++...|. .|.-....|=|..=.+|=-|. ++.++...++.
T Consensus 92 ~~~~--~~~k~~~~~~~d~~d~~~~~~lirfk~~e~a~lf~-~~~e~i~~l~~ 141 (150)
T 2crf_A 92 QIDK--ASEKSIHITAMDTEDQGVKVFLISASSKDTGQLYA-ALHHRILALRS 141 (150)
T ss_dssp CEEC--CSSSEEEEEEEBSSSCCEEEEEEECCHHHHHHHHH-HHHHHHHHHHH
T ss_pred eeec--CCCCEEEEEeecCCCCceEEEEEEECCHHHHHHHH-HHHHHHHHHHh
Confidence 3443 3578899888885 345567889999888885554 56665555543
No 9
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=78.49 E-value=17 Score=30.90 Aligned_cols=112 Identities=17% Similarity=0.328 Sum_probs=72.5
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCC-CceeeEEEEEEEeCCeEEEEEecCCCCceeeeeeccCCCCCCceeEe
Q 024799 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQS-DKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENSVETV 88 (262)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~-~~iwtGRLrVv~~g~~~~I~LeD~~tGeLFA~cpv~pg~~~~aVE~V 88 (262)
|+.|+. -.++||.+-|.+- ++ |... .. .+++-|+--..+-.+++.+-..+++--.|.++++- ..-+
T Consensus 8 E~~I~s-~rA~Vm~~D~~tk-~~-----WvP~g~~--~~~V~i~~d~~rnsyRIvg~~d~kvvinc~I~~~l---~Y~k- 74 (168)
T 1i2h_A 8 EQPIFS-TRAHVFQIDPNTK-KN-----WVPTSKH--AVTVSYFYDSTRNVYRIISLDGSKAIINSTITPNM---TFTK- 74 (168)
T ss_dssp SCCSEE-EEEEEEEECTTSS-CC-----SEESCSS--CEEEEEEEETTTTEEEEEEEETTEEEEEEECCTTC---CEEE-
T ss_pred ceeEEE-EEEEEEEECCCCC-Cc-----eeecCCC--CeEEEEEEcCCCCEEEEEEccCCEEEEecEecCCc---EEee-
Confidence 444544 4578999877432 23 7431 22 35666776655444666666667888889888762 1112
Q ss_pred ccccceEEEEEecCCCC-eEEEeeeecccCcccchhhhhhhHHHHHHHhhhh
Q 024799 89 LDSSRYFVLKIEDGTGK-HAFIGLGFNERNEAFDFNVALSDHEKYVRRELEK 139 (262)
Q Consensus 89 ~DSSRYFVLRV~D~~Gr-~AfIGiGF~eRsdAFDFnvaLqD~~K~l~r~~e~ 139 (262)
-+--|..-| | ++ .-..||+|..-.||-.|.-++++....|+...+.
T Consensus 75 -asp~FHqW~--d--~~~~~v~GLnF~Se~eA~~F~~~~~~ale~l~~~~~~ 121 (168)
T 1i2h_A 75 -TSQKFGQWA--D--SRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEK 121 (168)
T ss_dssp -EETTEEEEE--E--TTTTEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcccceee--c--CCCcEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222233334 3 13 4789999999999999999999999888877665
No 10
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=77.01 E-value=24 Score=28.51 Aligned_cols=113 Identities=14% Similarity=0.193 Sum_probs=72.1
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC------CeEEEEEecCCCCceeeeeeccCCCCCC
Q 024799 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK------DRCEIRLEDPNSGELFAACFVQPGQREN 83 (262)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~~~iwtGRLrVv~~g------~~~~I~LeD~~tGeLFA~cpv~pg~~~~ 83 (262)
|.+||.++ |-+|+.=. .+ .+|. .-=+|-|||.... .++-|.+-...++.|-+.+++.|+-
T Consensus 14 E~~~~~~r-aKL~~f~~--~~-----~~Wk---ERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m--- 79 (138)
T 2y8g_A 14 ESNVLQMQ-CKLFVFDK--TS-----QSWV---AVGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQM--- 79 (138)
T ss_dssp CEEEEEEE-EEEEEEET--TT-----TEEE---EEEEEEEEEEEEECTTTCCEEEEEEEEETTTCCEEEEEECCTTC---
T ss_pred cEEEEEEE-eEEEEEec--CC-----CCch---hceEEEEEEEEeccCCCCCccEEEEEEEcCcceEEEeeEecCCc---
Confidence 45666654 55555421 11 2463 2236899999753 4677777766789999999998873
Q ss_pred ceeEeccccceEEEEEecCC-CCeEEEeeeecccCcccchhhhhhhHHHHHHHhhhh
Q 024799 84 SVETVLDSSRYFVLKIEDGT-GKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEK 139 (262)
Q Consensus 84 aVE~V~DSSRYFVLRV~D~~-Gr~AfIGiGF~eRsdAFDFnvaLqD~~K~l~r~~e~ 139 (262)
.+... |.|++++...|.. |.-....|=|..=.+|=-|. ++.++...++...+.
T Consensus 80 ~~~~~--~~k~~~~~~~d~~d~~~~~~lirfk~~e~a~lf~-~~~~~i~~lk~~~~~ 133 (138)
T 2y8g_A 80 QIDKA--SEKSIRITAMDTEDQGVKVFLISASSKDTGQLYA-ALHHRILALRSRVEQ 133 (138)
T ss_dssp CEEEE--ETTEEEEECCC--CCCCCEEEEECCHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred eeecC--CCCEEEEEEecCCCCceEEEEEEECCHHHHHHHH-HHHHHHHHhhccccc
Confidence 45543 5688888888853 34447788887777775554 666666666654443
No 11
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=74.85 E-value=41 Score=29.08 Aligned_cols=110 Identities=18% Similarity=0.335 Sum_probs=76.9
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC--CeEEEEEecCCCCceeeeeeccCCCCCCceeE
Q 024799 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK--DRCEIRLEDPNSGELFAACFVQPGQRENSVET 87 (262)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~~~iwtGRLrVv~~g--~~~~I~LeD~~tGeLFA~cpv~pg~~~~aVE~ 87 (262)
|.+||..+ |-+|+.=.- . ..|. --=+|-|||.... .++.|.+-...+|.|.+..+|.|+- .+.+
T Consensus 73 Ee~lf~~R-aKLf~f~~~--~-----~~WK---ERGvG~lkilk~ket~k~RllMR~d~~~kV~LN~~I~~~m---~~~~ 138 (191)
T 3m1i_B 73 EEVLYKVR-AKLFRFDAD--A-----KEWK---ERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEY---TLKP 138 (191)
T ss_dssp EEEEEEEE-EEEEEEETT--T-----TEEE---EEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCTTC---CCBC
T ss_pred eeeeeEEe-eEEEEEecC--C-----CCcc---ceeEEEEEEEEcCCCCeEEEEEEecCcceEEEeeecCCCc---EEeE
Confidence 56777754 777776331 1 2352 2226889998764 4677777766789999999998873 5666
Q ss_pred eccccceEEEEE-ec-CCC--CeEEEeeeecccCcccchhhhhhhHHHHH
Q 024799 88 VLDSSRYFVLKI-ED-GTG--KHAFIGLGFNERNEAFDFNVALSDHEKYV 133 (262)
Q Consensus 88 V~DSSRYFVLRV-~D-~~G--r~AfIGiGF~eRsdAFDFnvaLqD~~K~l 133 (262)
..-|-|.||.-+ .| ..| .--.+-|=|..=.+|=.|.-+++++++.+
T Consensus 139 ~~~sdks~v~~~~~D~sdge~k~e~~aIRFk~~E~A~eF~~~~eeaq~~n 188 (191)
T 3m1i_B 139 NVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEIN 188 (191)
T ss_dssp CTTCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEecCcCCCCCcceEEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence 666668887765 45 234 35677888988888999999999886644
No 12
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=73.05 E-value=26 Score=27.86 Aligned_cols=111 Identities=17% Similarity=0.324 Sum_probs=68.0
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCC-CceeeEEEEEEEeCCeEEEEEecCCCCceeeeeeccCCCCCCceeEe
Q 024799 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQS-DKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENSVETV 88 (262)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~-~~iwtGRLrVv~~g~~~~I~LeD~~tGeLFA~cpv~pg~~~~aVE~V 88 (262)
|+.|+. -.++||.+-|.+ .++ |... .. .+++-++--..+-..++.+-..+++--.|.++++- ..-+
T Consensus 3 E~~i~~-~rA~V~~~D~~t-k~~-----W~p~g~~--~~~V~~~~d~~~~~yRIv~~~~~~vv~n~~i~~~l---~y~~- 69 (120)
T 1ddw_A 3 EQPIFS-TRAHVFQIDPNT-KKN-----WVPTSKH--AVTVSYFYDSTRNVYRIISLDGSKAIINSTITPNM---TFTK- 69 (120)
T ss_dssp EEEEEE-EEEEEEEECTTT-SCS-----EEESCSS--CEEEEEEEETTTTEEEEEEEETTEEEEEEECCTTC---CCEE-
T ss_pred ceEEEE-EEEEEEEEcCCC-CCc-----eEeCCCC--ceEEEEEEcCCCCEEEEEEccCCEEEEeCEecCCc---EEee-
Confidence 566665 468899987743 223 6431 11 26666666554444666665567888889888772 2222
Q ss_pred ccccceE-EEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHHHHHhhh
Q 024799 89 LDSSRYF-VLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELE 138 (262)
Q Consensus 89 ~DSSRYF-VLRV~D~~Gr~AfIGiGF~eRsdAFDFnvaLqD~~K~l~r~~e 138 (262)
.+-+| .-| |+ .-.-..||+|..-.||=.|.-++++...-|++..+
T Consensus 70 --a~p~FhqW~--d~-~~~~~~GLnF~s~~eA~~F~~~~~~~~~~l~~~~~ 115 (120)
T 1ddw_A 70 --TSQKFGQWA--DS-RANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKE 115 (120)
T ss_dssp --CSSSEEEEE--ET-TTTEEEEEECSSHHHHHHHHHHHHHHHHHHC----
T ss_pred --CCccccEEE--cC-CCcEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333 334 32 11478999999999999999998887776665443
No 13
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=64.09 E-value=48 Score=26.01 Aligned_cols=103 Identities=15% Similarity=0.264 Sum_probs=66.3
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceee---E--EEEEEEe--CCeEEEEEecCC-CCceeeeeeccCCCC
Q 024799 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWT---G--RLRVVSC--KDRCEIRLEDPN-SGELFAACFVQPGQR 81 (262)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~~~iwt---G--RLrVv~~--g~~~~I~LeD~~-tGeLFA~cpv~pg~~ 81 (262)
|+.|+. -.++||.+-|.+. + |.. .-. | ++.++-. .....|++.|-. ++++=-.|.++++-
T Consensus 3 e~~i~~-~~A~V~~~d~~~~--~-----W~p---~~~g~~gvs~V~~~~d~~~~~yrI~~~~l~~~~~vv~~~~l~~~l- 70 (115)
T 1egx_A 3 ETVICS-SRATVMLYDDGNK--R-----WLP---AGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAIVRGV- 70 (115)
T ss_dssp SCEEEE-EEEECBEECTTTS--S-----CCB---SSCSCCCCEEEEEEEETTTTEEEEEEEESSTTCCEEEEEEECSSC-
T ss_pred ceeEEE-EEEEEEEEcCCCC--c-----eeE---CCCCCCCccEEEEEEeCCCCEEEEEEEEcCCCCEEEEeeEEcCCc-
Confidence 455555 4578888866432 2 742 222 3 4566654 467888898876 77777889887762
Q ss_pred CCceeEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHHH
Q 024799 82 ENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYV 133 (262)
Q Consensus 82 ~~aVE~V~DSSRYFVLRV~D~~Gr~AfIGiGF~eRsdAFDFnvaLqD~~K~l 133 (262)
+-.-.+- || ..-.|+ | -.+|++|.+-.||=.|.-++++..+.|
T Consensus 71 ----~y~~~~p-~F-H~w~~~--~-~~~GLnF~se~eA~~F~~~v~~al~~l 113 (115)
T 1egx_A 71 ----KYNQATP-NF-HQWRDA--R-QVWGLNFGSKEDAAQFAAGMASALEAL 113 (115)
T ss_dssp ----CCCCSST-TE-EEEESS--S-CEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ----eEEecCc-cc-eEEecC--C-EEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 1111222 33 344453 3 699999999999999998888766554
No 14
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=62.99 E-value=17 Score=30.34 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=55.3
Q ss_pred CCCCCCCceeeEEEEEEEe--CCeEEEEEecCCCCceeeeeeccCCCCCCceeEeccccceEEEEEecCCCCeEEEeeee
Q 024799 36 GEWLQSDKIWTGRLRVVSC--KDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGF 113 (262)
Q Consensus 36 ~dW~~~~~iwtGRLrVv~~--g~~~~I~LeD~~tGeLFA~cpv~pg~~~~aVE~V~DSSRYFVLRV~D~~Gr~AfIGiGF 113 (262)
..|. ...+|-|-++.- +....|+|.|..++.+-=.+.++-+ .+-.-|-. |=+..+ |-..++|+-|
T Consensus 57 ~~W~---~~~~Gal~~VkD~~~rsyf~RlvDl~~~~viweqELY~~-----f~Y~~~r~--~FHtFe---~d~c~~GLnF 123 (152)
T 1mke_A 57 CMWS---KKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNN-----FVYNSPRG--YFHTFA---GDTCQVALNF 123 (152)
T ss_dssp TEEE---EEEEEEEEEEEETTTTEEEEEEECSSSCSEEEEEECCSS-----CCCBCSSS--SEEEEE---CSSSEEEEEE
T ss_pred CceE---ecCceEEEEEEECCCCeEEEEEEEccCCeEEEEeecccc-----eeeccCCC--eEEEEe---cCCcEEEEee
Confidence 3585 347898888776 5677899999987765445555443 22222333 333344 3466799999
Q ss_pred cccCcccchhhhhhhH
Q 024799 114 NERNEAFDFNVALSDH 129 (262)
Q Consensus 114 ~eRsdAFDFnvaLqD~ 129 (262)
.+..||-.|.-.+++.
T Consensus 124 ade~EA~~F~~~V~~~ 139 (152)
T 1mke_A 124 ANEEEAKKFRKAVTDL 139 (152)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999888864
No 15
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=62.01 E-value=63 Score=26.25 Aligned_cols=111 Identities=18% Similarity=0.318 Sum_probs=77.2
Q ss_pred eeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeC--CeEEEEEecCCCCceeeeeeccCCCCCCcee
Q 024799 9 LEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCK--DRCEIRLEDPNSGELFAACFVQPGQRENSVE 86 (262)
Q Consensus 9 iE~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~~~iwtGRLrVv~~g--~~~~I~LeD~~tGeLFA~cpv~pg~~~~aVE 86 (262)
=|.+||..+ |-+|+.=+- + .+|. .-=+|-|||.... .++-|.+-...+|.+-+..++.|+- .+.
T Consensus 21 ~E~~lf~~r-aKLf~f~~~--~-----~~Wk---erG~G~lkilk~k~~~k~RllmR~d~~~kv~lN~~i~~~m---~~~ 86 (140)
T 4hat_B 21 DEEVLYKVR-AKLFRFDKD--A-----KEWK---ERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEY---TLK 86 (140)
T ss_dssp TEEEEEEEE-EEEEEEETT--T-----TEEE---EEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCTTC---CCB
T ss_pred CeeEEEEEe-EEEEEEcCC--C-----CCcc---cccEEEEEEEEcCCCCeEEEEEEecCcceEEEEeEecCCe---EEe
Confidence 366788766 788876331 1 2463 1226889998753 5677777766789999999998873 566
Q ss_pred EeccccceEEEEE-ec---CCCCeEEEeeeecccCcccchhhhhhhHHHHH
Q 024799 87 TVLDSSRYFVLKI-ED---GTGKHAFIGLGFNERNEAFDFNVALSDHEKYV 133 (262)
Q Consensus 87 ~V~DSSRYFVLRV-~D---~~Gr~AfIGiGF~eRsdAFDFnvaLqD~~K~l 133 (262)
+..-|-|-||.-+ .| +.+.-..+-|=|..=.+|=.|.-+++++++..
T Consensus 87 ~~~~s~k~~v~~~~~D~sdg~~~~~~~~iRfk~~e~A~~f~~~~ee~~~~n 137 (140)
T 4hat_B 87 PNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEIN 137 (140)
T ss_dssp CCTTCSSEEEEEEEEECTTSSCEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCceEEEEccccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence 6655667777654 44 22345677888988888999999999886643
No 16
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=61.81 E-value=4.9 Score=30.03 Aligned_cols=49 Identities=16% Similarity=0.296 Sum_probs=36.2
Q ss_pred ceeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeCCeE
Q 024799 8 SLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRC 58 (262)
Q Consensus 8 ~iE~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~~~iwtGRLrVv~~g~~~ 58 (262)
+|..|.+++.-=.+|.+ +++..-++.+=|....|.|||.-|++.++.++
T Consensus 8 ~y~~v~~~~s~g~~f~t--~ST~~~i~vdi~s~~HPFyTGkqk~vdt~GRV 56 (73)
T 1nkw_Y 8 KAVPCKIIYQGQVVMET--MSTRPEIHVDVWSGVHPFWTGEERFLDTEGRV 56 (73)
T ss_pred CCEEEEEEECCCCEEEE--cccCCCEEEEECCCCCcCCcCcEEEEeccccH
Confidence 35667777754456666 44445588888988899999999999987654
No 17
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=59.53 E-value=48 Score=26.91 Aligned_cols=102 Identities=10% Similarity=0.131 Sum_probs=65.5
Q ss_pred ccceeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeCC---eEEEEEecCCCCceeeeeeccCCCCC
Q 024799 6 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKD---RCEIRLEDPNSGELFAACFVQPGQRE 82 (262)
Q Consensus 6 ~~~iE~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~~~iwtGRLrVv~~g~---~~~I~LeD~~tGeLFA~cpv~pg~~~ 82 (262)
|..|++||.++.-|.||+.=+.+. .|. +.--.|-|=|+++.. -+.|.|--.++..+ - -++.++
T Consensus 25 Dp~I~~Il~~a~~v~vY~f~~~~~-------~W~--K~~iEG~LFv~~R~~~P~~~~ivLNR~~~~n~-~-~~l~~~--- 90 (134)
T 2lyd_A 25 DPYAKEIVDSSSHVAFYTFNSSQN-------EWE--KTDVEGAFFIYHRNAEPFHSIFINNRLNTTSF-V-EPITGS--- 90 (134)
T ss_dssp CTTCCEEEEEEEEEEEEEEETTTT-------EEE--EEEEEEEEEEEECSSSSSEEEEEEETTTTEEE-E-EECCSS---
T ss_pred CcHHHHHHhhCCeEEEEEecCCcC-------cee--EcCCcceEEEEEccCCCceEEEEEcCCCCcce-e-EEcCCC---
Confidence 357999999999999999854322 585 556789999999863 45666666655543 2 244333
Q ss_pred CceeEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhh
Q 024799 83 NSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSD 128 (262)
Q Consensus 83 ~aVE~V~DSSRYFVLRV~D~~Gr~AfIGiGF~eRsdAFDFnvaLqD 128 (262)
.-+|-. | -|..+|.. +.-..||.|-|-.|.=...-.|+.
T Consensus 91 ~~~e~~-~--~~li~r~~----~~~I~GiWf~~~~d~~~i~~~l~~ 129 (134)
T 2lyd_A 91 LELQSQ-P--PFLLYRNE----RSRIRGFWFYNSEECDRISGLVNG 129 (134)
T ss_dssp CEEEEE-T--TEEEEEEG----GGEEEEEEESSHHHHHHHHHHHHH
T ss_pred cEEEee-C--CEEEEECC----CCcEEEEEecChHHHHHHHHHHHH
Confidence 223322 2 36666643 346899999887765555444443
No 18
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=56.45 E-value=15 Score=31.15 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=55.1
Q ss_pred CCCCCCCceeeEEEEEEEe--CCeEEEEEecCCCCceeeeeeccCCCCCCceeEeccccceEEEEEecCCCCeEEEeeee
Q 024799 36 GEWLQSDKIWTGRLRVVSC--KDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGF 113 (262)
Q Consensus 36 ~dW~~~~~iwtGRLrVv~~--g~~~~I~LeD~~tGeLFA~cpv~pg~~~~aVE~V~DSSRYFVLRV~D~~Gr~AfIGiGF 113 (262)
..|. ...+|-|-+|.- +....|+|.|..++.+-=.+.++-+ .+-.-|-.=|.+ .+ |-..++|+-|
T Consensus 74 ~~W~---~~~~Gal~~vkD~~~rsyf~RlvDl~~~~vvweqELY~~-----f~Y~~~r~~FHt--Fe---~d~c~~GLnF 140 (169)
T 2ifs_A 74 CMWS---KKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNN-----FVYNSPRGYFHT--FA---GDTCQVALNF 140 (169)
T ss_dssp TEEE---EEEEEEEEEEEETTTTEEEEEEEETTTCCCCEEEECCSS-----CCCBCCCSSEEE--EE---CSSSEEEEEC
T ss_pred CeeE---ecCceEEEEEEECCCCeEEEEEEEccCCeEEEEeecccc-----eeeccCCCeEEE--ee---cCCcEEEEee
Confidence 3585 347998888776 4577899999987765445555443 222223332333 44 4567799999
Q ss_pred cccCcccchhhhhhhH
Q 024799 114 NERNEAFDFNVALSDH 129 (262)
Q Consensus 114 ~eRsdAFDFnvaLqD~ 129 (262)
.+..||-.|.-++++.
T Consensus 141 ade~EA~~F~~~V~~~ 156 (169)
T 2ifs_A 141 ANEEEAKKFRKAVTDL 156 (169)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999888863
No 19
>3f1f_4 50S ribosomal protein L31; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 3d5d_4 3d5b_4 3f1h_4
Probab=51.36 E-value=12 Score=29.41 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=21.1
Q ss_pred ceeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeCCeEE
Q 024799 8 SLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCE 59 (262)
Q Consensus 8 ~iE~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~~~iwtGRLrVv~~g~~~~ 59 (262)
+|..|.+++.-=.+|.+ +++..-++.+=|....|.|||.-|++.++.+++
T Consensus 34 ~Y~~v~v~ct~G~~f~t--~ST~~~i~vDI~S~~HPFYTGkqk~vdt~GRVe 83 (97)
T 3f1f_4 34 KLVPARIICGCGNVIET--YSTKPEIYVEVCSKCHPFYTGQQRFVDTEGRVE 83 (97)
T ss_dssp --CCCEEEETTEEEEEC--CCSSCCEEESSCTTC------------------
T ss_pred CCeEEEEEECCCCEEEe--eeeeeEEEEEECCCCCCCCcCCEEEEcccCcHH
Confidence 36777777765556665 444456899999888999999999999887653
No 20
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.01 E-value=71 Score=25.27 Aligned_cols=81 Identities=9% Similarity=0.251 Sum_probs=54.9
Q ss_pred eEEEEEEEe-CCeEEEEEecCCC-CceeeeeeccCCCCCCceeEeccccceEEEEEecC--CCC----eEEEeeeecccC
Q 024799 46 TGRLRVVSC-KDRCEIRLEDPNS-GELFAACFVQPGQRENSVETVLDSSRYFVLKIEDG--TGK----HAFIGLGFNERN 117 (262)
Q Consensus 46 tGRLrVv~~-g~~~~I~LeD~~t-GeLFA~cpv~pg~~~~aVE~V~DSSRYFVLRV~D~--~Gr----~AfIGiGF~eRs 117 (262)
+|-|||... ..++-|.+--..+ |.|-+...+.|+- .+++. .+-+.+++-+.++ .|. -..+=|=|..=.
T Consensus 35 vG~lki~~~k~~k~RllmR~d~~~~kv~lN~~i~~~m---~~~~~-g~~~~~~~~~~~~~~d~~~~~~~~~~~lrfk~~e 110 (125)
T 2ec1_A 35 IGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNM---PCTRT-GKNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSE 110 (125)
T ss_dssp EEEEEEEECSSSSEEEEEEESSSSCCBSCCEECCSSC---CEECC-TTTEEEEEECCSSCSCSSSSSSCEEEEEECSSHH
T ss_pred EEEEEeeecCCCcEEEEEEecCCCCEEEEeeEEcCCC---eEEec-CCCcEEEEEccCCcccCCCCCceEEEEEEECCHH
Confidence 688888876 3466666655444 8998888888763 56665 5556666666443 343 445557787777
Q ss_pred cccchhhhhhhHH
Q 024799 118 EAFDFNVALSDHE 130 (262)
Q Consensus 118 dAFDFnvaLqD~~ 130 (262)
+|=.|.-+|+++.
T Consensus 111 ~a~~f~~~~~e~k 123 (125)
T 2ec1_A 111 DADELHKILLEKK 123 (125)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 8888888888875
No 21
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=48.16 E-value=1.1e+02 Score=24.65 Aligned_cols=95 Identities=20% Similarity=0.351 Sum_probs=61.0
Q ss_pred ccceeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeCC--eEEEEEecCCCCceeeeeeccCCCCCC
Q 024799 6 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKD--RCEIRLEDPNSGELFAACFVQPGQREN 83 (262)
Q Consensus 6 ~~~iE~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~~~iwtGRLrVv~~g~--~~~I~LeD~~tGeLFA~cpv~pg~~~~ 83 (262)
|..|++||.++.-|.||+.=+. ..+|. +.--.|.|=|+++.. -+.|.|--.++..+ - -++.++ .
T Consensus 20 Dp~I~~Il~~a~~v~vY~f~~~-------~~~W~--K~~iEGtLFv~~R~~P~~~~iVlNR~~~~n~-~-~~i~~~---~ 85 (127)
T 2qkl_A 20 YPEIESIIDIASHVAVYQFDVG-------SQKWL--KTSIEGTFFLVKDQRARVGYVILNRNSPENL-Y-LFINHP---S 85 (127)
T ss_dssp CTTEEEEEEEEEEEEEECC-------------CC--EEEEEEEEEEEEETTCCEEEEEEESSSSCCE-E-EEECSG---G
T ss_pred CchHHHHhccCCeEEEEEecCC-------CCceE--EcCcEEEEEEEEccCCceEEEEEcCCCCcCe-e-EecCCC---c
Confidence 3569999999999999998764 33695 666899999999972 35566666655443 2 234333 2
Q ss_pred ceeEeccccceEEEEEecCCCCeEEEeeeecccCcccc
Q 024799 84 SVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFD 121 (262)
Q Consensus 84 aVE~V~DSSRYFVLRV~D~~Gr~AfIGiGF~eRsdAFD 121 (262)
-+| +-| .|..+|.. +.-..||.|-+-.|.=.
T Consensus 86 ~~e-~~~--~~l~~r~~----~~~i~GiWf~~~~d~~~ 116 (127)
T 2qkl_A 86 NVH-LVD--RYLIHRTE----NQHVVGLWMFDPNDMSR 116 (127)
T ss_dssp GEE-EET--TEEEEEET----TTEEEEEEESSTHHHHH
T ss_pred eEE-EeC--CEEEEEcC----CCcEEEEEEEchHHHHH
Confidence 344 333 37777753 36699999988655433
No 22
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=47.45 E-value=41 Score=26.98 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=47.0
Q ss_pred CCeEEEEEecCCCCceeeeeeccCCCCCCceeEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHHH
Q 024799 55 KDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYV 133 (262)
Q Consensus 55 g~~~~I~LeD~~tGeLFA~cpv~pg~~~~aVE~V~DSSRYFVLRV~D~~Gr~AfIGiGF~eRsdAFDFnvaLqD~~K~l 133 (262)
.....|+.++-.++++=-.|.++++- .-.-.+--|- .-.|.+ -.+|++|.+-.||=.|.-++++....|
T Consensus 56 ~~~yrI~~~~l~d~~vv~~~~l~~~l-----~Y~~~~p~FH--~w~~~~---~~~GLnF~se~eA~~F~~~v~~al~~l 124 (126)
T 2jp2_A 56 RSGFLIHGERQKDKLVVLECYVRKDL-----VYTKANPTFH--HWKVDN---RKFGLTFQSPADARAFDRGVRKAIEDL 124 (126)
T ss_dssp CBCEEEEEEESSSSCEEEEEEESSCC-----CEEEEETTEE--EEECSS---SEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEcCCCeEEEEEEEeCCc-----eEEecCCcce--EEEcCC---EEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 35677888886678888899888762 2222233233 344432 339999999999999998888766554
No 23
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=37.01 E-value=42 Score=24.25 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=15.2
Q ss_pred cCCCCCCCceEEEecCCC
Q 024799 157 VNHRLKEGETIRINVKPK 174 (262)
Q Consensus 157 ~D~sLKeGeTI~Ini~~k 174 (262)
.||.+++|.||++-+...
T Consensus 62 ~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 62 SSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp TTTTCCTTEEEEEECCCC
T ss_pred HHcCCCCCCEEEEEECCC
Confidence 479999999999988643
No 24
>3v2d_4 50S ribosomal protein L31; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 2xqe_4 ...
Probab=36.51 E-value=17 Score=26.98 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=28.1
Q ss_pred ceeEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeEEEEEEEeCCeEE
Q 024799 8 SLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCE 59 (262)
Q Consensus 8 ~iE~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~~~iwtGRLrVv~~g~~~~ 59 (262)
+|..|.+++.-=.+|.+ +++..-.+.+=|....|.|||.-|++.++.+++
T Consensus 8 ~Y~~v~v~c~~g~~f~t--~ST~~~i~vdi~S~~HPFyTGkqk~vdt~GRVe 57 (71)
T 3v2d_4 8 KLVPARIICGCGNVIET--YSTKPEIYVEVCSKCHPFYTGQQRFVDTEGRVE 57 (71)
T ss_dssp CCEEEEEEETTSCEEEE--EESSSEEEESCCTTTSSSSSCC-----------
T ss_pred CCeEEEEEECCCCEEEe--eeeccCEEEEecCCCCCCCCCCEEEEcccCcHH
Confidence 47778877764455554 233335888999888999999999999887653
No 25
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus} SCOP: b.55.1.2 PDB: 1m7e_A
Probab=33.50 E-value=1.6e+02 Score=23.82 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=44.8
Q ss_pred eEEEEEEEeCCeEEEEEecCCCCceeeeeeccCCCCCCceeEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhh
Q 024799 46 TGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVA 125 (262)
Q Consensus 46 tGRLrVv~~g~~~~I~LeD~~tGeLFA~cpv~pg~~~~aVE~V~DSSRYFVLRV~D~~Gr~AfIGiGF~eRsdAFDFnva 125 (262)
.-.|.|...| |+|.|+.|++++...|+.- ..-.+. -....|+|..=..|+ +.|+|.. |.....|=.-..+
T Consensus 61 ~V~L~IS~~G----I~v~d~~tk~~~~~~~l~~-ISfca~--d~~d~r~FafI~k~~-~~h~c~v--f~s~~~A~~I~~t 130 (160)
T 1p3r_A 61 RIWVNISLSG----IKIIDEKTGVIEHEHPVNK-ISFIAR--DVTDNRAFGYVCGGE-GQHQFFA--IKTGQQAEPLVVD 130 (160)
T ss_dssp EEEEEEETTE----EEEEETTTCCEEEEECGGG-EEEEEE--CTTCTTEEEEEESST-TCEEEEE--EEESSCSHHHHHH
T ss_pred EEEEEEECCe----EEEEECCCCeEEEecccCe-EEEEec--CCCCCcEEEEEEecC-CEEEEEE--EccHHHHHHHHHH
Confidence 3455554443 5778999999999888721 000111 112248998877876 6999885 5544445555555
Q ss_pred hhhHHH
Q 024799 126 LSDHEK 131 (262)
Q Consensus 126 LqD~~K 131 (262)
|-..+.
T Consensus 131 igqAF~ 136 (160)
T 1p3r_A 131 LKDLFQ 136 (160)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 26
>3efy_A CIF (cell cycle inhibiting factor); bacteria, virulence factor, type III secretion, E. coli, plasmid; 1.70A {Escherichia coli}
Probab=33.50 E-value=27 Score=30.29 Aligned_cols=22 Identities=36% Similarity=0.730 Sum_probs=18.8
Q ss_pred eccccceEEEEEecCCCCeEEE
Q 024799 88 VLDSSRYFVLKIEDGTGKHAFI 109 (262)
Q Consensus 88 V~DSSRYFVLRV~D~~Gr~AfI 109 (262)
+++|+.-||+||.|+.=.||||
T Consensus 48 ~l~s~knyV~~VNDgrLGH~fl 69 (195)
T 3efy_A 48 CMPECKSFVLRVNDGALGHAYI 69 (195)
T ss_dssp TCCTTSEEEEEEEETTTTEEEE
T ss_pred hhhcccCEEEEEcCCCcceeEE
Confidence 6899999999999987557776
No 27
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=31.01 E-value=95 Score=24.41 Aligned_cols=67 Identities=12% Similarity=0.167 Sum_probs=45.0
Q ss_pred CCeEEEEEecCCCCceeeeeeccCCCCCCceeEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHH
Q 024799 55 KDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEK 131 (262)
Q Consensus 55 g~~~~I~LeD~~tGeLFA~cpv~pg~~~~aVE~V~DSSRYFVLRV~D~~Gr~AfIGiGF~eRsdAFDFnvaLqD~~K 131 (262)
.....|+.++-.++++=-.|.++++ +.-.-++--|- ...|+ + -.+||+|.+-.||-.|..+++....
T Consensus 47 ~~~yrIv~~~l~~~~vv~~~~l~~~-----~~y~~~~p~Fh--~w~~~--~-~~~GL~F~se~eA~~F~~~v~~al~ 113 (118)
T 1xod_A 47 GTEFLVHGERLRDKTVVLECVLRRD-----LVYNKVTPTFH--HWRIG--D-KKFGLTFQSPADARAFDRGIRRAIE 113 (118)
T ss_dssp --CCEEEEEETTTCCEEEEEECCTT-----CEEEEEETTEE--EEEET--T-EEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCeEEEEEEEeCC-----cEEEecCCcce--EEEeC--C-EEEEEecCCHHHHHHHHHHHHHHHH
Confidence 3456678887667788889988876 33333444343 34443 2 3499999999999999888776543
No 28
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=30.32 E-value=86 Score=24.36 Aligned_cols=104 Identities=15% Similarity=0.279 Sum_probs=64.6
Q ss_pred eEEEEeeceeEEEEcCCCCCCCCeecCCCCCCCceeeE--EEEEEEe--CCeEEEEEecCCCCceeeeeeccCCCCCCce
Q 024799 10 EHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTG--RLRVVSC--KDRCEIRLEDPNSGELFAACFVQPGQRENSV 85 (262)
Q Consensus 10 E~vL~v~~eV~VY~IPP~~s~~GyrA~dW~~~~~iwtG--RLrVv~~--g~~~~I~LeD~~tGeLFA~cpv~pg~~~~aV 85 (262)
|+.|+. -.++||.+-|.+. + |..... =.| ++.++-. ...-.|+..+-.++++=-.|.++++-
T Consensus 3 e~~i~~-~~A~V~~~d~~~~--~-----W~p~~~-~~g~s~V~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~----- 68 (112)
T 1evh_A 3 EQSICQ-ARAAVMVYDDANK--K-----WVPAGG-STGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIPKGL----- 68 (112)
T ss_dssp EEEEEE-EEEEEEEEETTTT--E-----EEEGGG-CCSCEEEEEEEETTTTEEEEEEEETTTCCEEEEEEECTTC-----
T ss_pred ceeEEE-EEEEEEEEcCCCC--c-----eEECCC-CCCceEEEEEEECCCCEEEEEEEECCCCcEEEeeEecCCc-----
Confidence 666665 4578888876332 3 632110 012 2555554 35677888886677777889887762
Q ss_pred eEeccccceEEEEEecCCCCeEEEeeeecccCcccchhhhhhhHHHH
Q 024799 86 ETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKY 132 (262)
Q Consensus 86 E~V~DSSRYFVLRV~D~~Gr~AfIGiGF~eRsdAFDFnvaLqD~~K~ 132 (262)
.-.-.+ -|| ....|+ | -.+|++|.+-.||=.|.-++++....
T Consensus 69 ~y~~~~-p~F-h~w~~~--~-~~~GLnF~se~eA~~F~~~v~~al~~ 110 (112)
T 1evh_A 69 KYNQAT-QTF-HQWRDA--R-QVYGLNFGSKEDANVFASAMMHALEV 110 (112)
T ss_dssp CCBCCS-SSE-EEEECS--S-CEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eEEecC-ccc-eeEecC--C-EEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 111122 233 444554 2 59999999999999998888875543
No 29
>4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A
Probab=29.81 E-value=33 Score=30.96 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=18.9
Q ss_pred EeccccceEEEEEecCCCCeEEE
Q 024799 87 TVLDSSRYFVLKIEDGTGKHAFI 109 (262)
Q Consensus 87 ~V~DSSRYFVLRV~D~~Gr~AfI 109 (262)
.+++|+.-||+||.|+.=.||||
T Consensus 115 ~~L~s~kNyV~~VNDgrLGH~fl 137 (261)
T 4fbj_A 115 DQLSSAKNYVALVNDRRLGHMFL 137 (261)
T ss_dssp GGSCTTCEEEEEEEETTTTEEEE
T ss_pred hhhhcccCEEEEEcCCCcceeEE
Confidence 36899999999999987457765
No 30
>1n7v_A Adsorption protein P2; bacteriophage PRD1, viral receptor-binding, beta-propeller, proline-rich, antibiotic-resistance, viral protein; 2.20A {Enterobacteria phage PRD1} SCOP: b.126.1.1 PDB: 1n7u_A
Probab=29.24 E-value=24 Score=33.78 Aligned_cols=64 Identities=27% Similarity=0.292 Sum_probs=37.3
Q ss_pred eEEEEEEEeCCeEEEEEecCCCCceeeeeecc-CC----CCCCceeEe--------ccccceEEEEEecCC-CCeEEEee
Q 024799 46 TGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ-PG----QRENSVETV--------LDSSRYFVLKIEDGT-GKHAFIGL 111 (262)
Q Consensus 46 tGRLrVv~~g~~~~I~LeD~~tGeLFA~cpv~-pg----~~~~aVE~V--------~DSSRYFVLRV~D~~-Gr~AfIGi 111 (262)
.|||--.--.-.++|-| ||+.|+-||-+ -. ..+.+-|-. .=||-||.+--.|+- |-++|||.
T Consensus 296 agrlvp~v~di~vdifl----tgkff~l~pp~ritnnyfad~~v~e~tvt~gn~~~~~~~~y~~vy~tdg~g~a~~fi~~ 371 (555)
T 1n7v_A 296 AGRLVPYVEDIAVDIFL----TGKFFTLNPPLRITNNYFADDEVKENTVTIGNYTTTLSSAYYAVYKTDGYGGATCFIAS 371 (555)
T ss_dssp EECCEEEEEEEEEEEEE----EEEEEEECCCEEEEEEECCTTTCBCCEEEESCCCSEEEECSEEEEEECSSSEEEEEEES
T ss_pred hhcccchhhheeEEEEe----ecceeeecCceeeccccccccccccceEEecceecchhheeeEEEeccCCCceeEEEec
Confidence 45553332233444544 79999999731 00 001222222 237789999888875 56999998
Q ss_pred ee
Q 024799 112 GF 113 (262)
Q Consensus 112 GF 113 (262)
|=
T Consensus 372 gg 373 (555)
T 1n7v_A 372 GG 373 (555)
T ss_dssp SS
T ss_pred CC
Confidence 73
No 31
>4f8c_A Cycle inhibiting factor; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.95A {Yersinia pseudotuberculosis}
Probab=28.14 E-value=36 Score=30.88 Aligned_cols=22 Identities=32% Similarity=0.706 Sum_probs=18.9
Q ss_pred eccccceEEEEEecCCCCeEEE
Q 024799 88 VLDSSRYFVLKIEDGTGKHAFI 109 (262)
Q Consensus 88 V~DSSRYFVLRV~D~~Gr~AfI 109 (262)
+++|+.-||+||.|+.=.||||
T Consensus 142 ~L~s~KnyV~~VNDgrLGH~fl 163 (275)
T 4f8c_A 142 SLPAHKNFILRVNDGGLGHAYV 163 (275)
T ss_dssp TCCTTSEEEEEEEETTTTEEEE
T ss_pred hhhcccCEEEEEcCCCcceeEE
Confidence 6899999999999987557776
No 32
>3eir_A Putative ATP/GTP binding protein; papain-like fold, unknown function; 2.10A {Burkholderia pseudomallei} PDB: 3eit_A 3gqm_A 4hcp_A 4hcn_A
Probab=26.74 E-value=39 Score=30.59 Aligned_cols=29 Identities=31% Similarity=0.504 Sum_probs=20.4
Q ss_pred eccccceEEEEEecCCCCeEEE-eeeeccc
Q 024799 88 VLDSSRYFVLKIEDGTGKHAFI-GLGFNER 116 (262)
Q Consensus 88 V~DSSRYFVLRV~D~~Gr~AfI-GiGF~eR 116 (262)
+++|+.-||+||.|+.=.|||| -|==.++
T Consensus 146 ~L~s~KNyV~~VNDgrLGH~flIDiPa~~~ 175 (281)
T 3eir_A 146 TLDSHKNYVVIVNDGRLGHKFLIDLPALTQ 175 (281)
T ss_dssp TSCTTSEEEEEEEETTTTEEEEEEECCC--
T ss_pred hhhcccCEEEEEcCCCcceeEEEeccCCCC
Confidence 5899999999999987446664 4444444
No 33
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=25.96 E-value=30 Score=23.52 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=13.1
Q ss_pred CCCCCCCceEEEecC
Q 024799 158 NHRLKEGETIRINVK 172 (262)
Q Consensus 158 D~sLKeGeTI~Ini~ 172 (262)
+++|++|+.|.|--+
T Consensus 26 eLsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 26 FLRLNPGDIVELTKA 40 (70)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred cCCcCCCCEEEEEeC
Confidence 699999999998764
No 34
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=24.55 E-value=49 Score=21.29 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=13.2
Q ss_pred CCCCCCCceEEEecCC
Q 024799 158 NHRLKEGETIRINVKP 173 (262)
Q Consensus 158 D~sLKeGeTI~Ini~~ 173 (262)
+++|++|+.|.|--..
T Consensus 16 eLs~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 16 EISIDPGDIITVIRGD 31 (54)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CccCCCCCEEEEEEec
Confidence 6999999999986543
No 35
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=23.32 E-value=37 Score=22.32 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=12.7
Q ss_pred CCCCCCCceEEEecC
Q 024799 158 NHRLKEGETIRINVK 172 (262)
Q Consensus 158 D~sLKeGeTI~Ini~ 172 (262)
+++|++|+.|.|--.
T Consensus 20 eLs~~~Gd~i~v~~~ 34 (59)
T 2g6f_X 20 ELSFSKGDVIHVTRV 34 (59)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CcCCCCCCEEEEEEe
Confidence 699999999998643
No 36
>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}
Probab=23.26 E-value=47 Score=22.98 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=11.2
Q ss_pred CCCCCCCceEEEe
Q 024799 158 NHRLKEGETIRIN 170 (262)
Q Consensus 158 D~sLKeGeTI~In 170 (262)
++||++|+.|.|-
T Consensus 20 ~Ls~~~Gd~i~v~ 32 (60)
T 2lx7_A 20 GLRFAAGELITLL 32 (60)
T ss_dssp CCCCCTTCEEEBS
T ss_pred CccCCCCCEEEEe
Confidence 3899999999874
No 37
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=22.77 E-value=39 Score=22.15 Aligned_cols=15 Identities=27% Similarity=0.197 Sum_probs=12.8
Q ss_pred CCCCCCCceEEEecC
Q 024799 158 NHRLKEGETIRINVK 172 (262)
Q Consensus 158 D~sLKeGeTI~Ini~ 172 (262)
+++|++|+.|+|--.
T Consensus 17 eLs~~~Gd~i~v~~~ 31 (58)
T 2bz8_A 17 ELTISVGEIITNIRK 31 (58)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred EeeECCCCEEEEEEe
Confidence 699999999998654
No 38
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=22.74 E-value=38 Score=23.63 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.5
Q ss_pred cCCCCCCCceEEEecC
Q 024799 157 VNHRLKEGETIRINVK 172 (262)
Q Consensus 157 ~D~sLKeGeTI~Ini~ 172 (262)
-+++|++|+.|.|--+
T Consensus 33 ~eLsf~~Gd~i~v~~~ 48 (78)
T 1k1z_A 33 GFLRLNPGDIVELTKA 48 (78)
T ss_dssp CCCCBCTTCEEEEEEC
T ss_pred CccCCCCCCEEEEEEc
Confidence 4699999999998664
No 39
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=22.60 E-value=38 Score=23.64 Aligned_cols=14 Identities=14% Similarity=0.461 Sum_probs=12.1
Q ss_pred CCCCCCCceEEEec
Q 024799 158 NHRLKEGETIRINV 171 (262)
Q Consensus 158 D~sLKeGeTI~Ini 171 (262)
+++|++|+.|.|-=
T Consensus 22 ELs~~~Gd~i~v~~ 35 (65)
T 2lj0_A 22 ELELRDGDIVDVME 35 (65)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred CcCCCCCCEEEEeE
Confidence 69999999999853
No 40
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=22.18 E-value=55 Score=21.80 Aligned_cols=15 Identities=13% Similarity=0.333 Sum_probs=12.8
Q ss_pred CCCCCCCceEEEecC
Q 024799 158 NHRLKEGETIRINVK 172 (262)
Q Consensus 158 D~sLKeGeTI~Ini~ 172 (262)
+++|++|+.|.|--+
T Consensus 37 eLsf~~Gd~i~v~~~ 51 (62)
T 1g2b_A 37 EVTMKKGDILTLLNS 51 (62)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred ccCCCCCCEEEEEEe
Confidence 599999999998654
No 41
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=22.17 E-value=40 Score=22.46 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=12.9
Q ss_pred CCCCCCCceEEEecC
Q 024799 158 NHRLKEGETIRINVK 172 (262)
Q Consensus 158 D~sLKeGeTI~Ini~ 172 (262)
+++|++|+.|.|--+
T Consensus 22 eLs~~~Gd~i~v~~~ 36 (64)
T 2jte_A 22 ELTFREGEIIHLISK 36 (64)
T ss_dssp BCCBCTTCEEEEEES
T ss_pred ccCCCCCCEEEEEEC
Confidence 699999999999654
No 42
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=22.14 E-value=58 Score=21.27 Aligned_cols=15 Identities=13% Similarity=-0.071 Sum_probs=12.7
Q ss_pred CCCCCCCceEEEecC
Q 024799 158 NHRLKEGETIRINVK 172 (262)
Q Consensus 158 D~sLKeGeTI~Ini~ 172 (262)
+++|++|+.|.|--.
T Consensus 16 eLs~~~Gd~i~v~~~ 30 (58)
T 1jo8_A 16 ELTFVENDKIINIEF 30 (58)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred CcccCCCCEEEEEEe
Confidence 699999999998653
No 43
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=21.74 E-value=60 Score=20.91 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=12.6
Q ss_pred CCCCCCCceEEEecC
Q 024799 158 NHRLKEGETIRINVK 172 (262)
Q Consensus 158 D~sLKeGeTI~Ini~ 172 (262)
+++|++|+.|.|--+
T Consensus 17 eLs~~~Gd~i~v~~~ 31 (58)
T 4e6r_A 17 ELSLVXGSRVTVMEX 31 (58)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred EeeEeCCCEEEEeEc
Confidence 599999999998643
No 44
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain, phosphoprotein, signaling protei structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Probab=21.66 E-value=3.2e+02 Score=22.01 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=42.7
Q ss_pred EEEEecCCCCceeeeeeccCCCCCCceeEeccccceEEEEEecCCCCeEEEeeeecccCc-ccchhhhhhhHHHHH
Q 024799 59 EIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNE-AFDFNVALSDHEKYV 133 (262)
Q Consensus 59 ~I~LeD~~tGeLFA~cpv~pg~~~~aVE~V~DSSRYFVLRV~D~~Gr~AfIGiGF~eRsd-AFDFnvaLqD~~K~l 133 (262)
-|+|.|+.|++++..+|+.- ..-.++ -.+.-|+|+.=..|+.. .-|.=--|.-..+ |=+...+|...++..
T Consensus 88 GI~l~d~~t~~~l~~~~i~~-ISf~~~--d~~~~~~FafIar~~~~-~~~~CHvF~c~~~~A~~I~~aIgqAF~~a 159 (168)
T 3f0w_A 88 GLRVVDDKTKDLLVDQTIEK-VSFCAP--DRNLDKAFSYICRDGTT-RRWICHCFLALKDSGERLSHAVGCAFAAC 159 (168)
T ss_dssp EEEEEETTTCCEEEEEEGGG-EEEEEE--CSSCTTEEEEEEEETTT-TEEEEEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCeEEEeeecCc-EEEEec--CCCCCcEEEEEEecCCC-CcEEEEEEEeccchHHHHHHHHHHHHHHH
Confidence 37889999999999998731 000111 12456899987777542 2233344443322 777777777766543
No 45
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=21.56 E-value=42 Score=22.11 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=12.8
Q ss_pred CCCCCCCceEEEecC
Q 024799 158 NHRLKEGETIRINVK 172 (262)
Q Consensus 158 D~sLKeGeTI~Ini~ 172 (262)
+++|++|+.|.|--.
T Consensus 21 eLs~~~Gd~i~v~~~ 35 (60)
T 2xmf_A 21 ELSFNANDIIDIIKE 35 (60)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CcCCCCCCEEEEEEe
Confidence 589999999998654
No 46
>2wtp_A ORF131 protein, CZCE; metal binding protein, heavy metal, copper binding; HET: TRS; 1.50A {Ralstonia metallidurans CH34} PDB: 2wto_A*
Probab=21.54 E-value=22 Score=29.29 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.5
Q ss_pred CCCCCCceEEEecCCCCC
Q 024799 159 HRLKEGETIRINVKPKPT 176 (262)
Q Consensus 159 ~sLKeGeTI~Ini~~k~~ 176 (262)
.-+|.||||++.++||.-
T Consensus 73 InV~~GETVrF~v~nkt~ 90 (131)
T 2wtp_A 73 VNVDSGETVAFRAGEKIV 90 (131)
T ss_dssp EEEETTCEEEEEETTEEE
T ss_pred EEecCCCEEEEEeCCcEE
Confidence 578999999999999854
No 47
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=21.53 E-value=60 Score=21.19 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=12.0
Q ss_pred CCCCCCCceEEEec
Q 024799 158 NHRLKEGETIRINV 171 (262)
Q Consensus 158 D~sLKeGeTI~Ini 171 (262)
+++|++|+.|.|--
T Consensus 19 eLs~~~Gd~i~v~~ 32 (60)
T 2x3w_D 19 ELSFKAGDELTKLG 32 (60)
T ss_dssp BCCBCTTCEEEECS
T ss_pred cccCCCCCEEEEEE
Confidence 69999999999843
No 48
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=21.46 E-value=61 Score=21.08 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=12.8
Q ss_pred CCCCCCCceEEEecC
Q 024799 158 NHRLKEGETIRINVK 172 (262)
Q Consensus 158 D~sLKeGeTI~Ini~ 172 (262)
+++|++|+.|.|--.
T Consensus 17 eLs~~~Gd~i~v~~~ 31 (58)
T 1uti_A 17 ELGFRSGEVVEVLDS 31 (58)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred CCCCCCCCEEEEEEE
Confidence 699999999998653
No 49
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1
Probab=21.37 E-value=43 Score=22.55 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=13.3
Q ss_pred CCCCCCCceEEEecCC
Q 024799 158 NHRLKEGETIRINVKP 173 (262)
Q Consensus 158 D~sLKeGeTI~Ini~~ 173 (262)
+++|++|+.|.|--..
T Consensus 5 eLs~~~Gd~i~v~~~~ 20 (63)
T 1tuc_A 5 EVTMKKGDILTLLNST 20 (63)
T ss_dssp CCCBCTTCEEEEEECC
T ss_pred ccCCCCCCEEEEEEec
Confidence 6899999999986643
No 50
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=21.17 E-value=43 Score=22.73 Aligned_cols=14 Identities=7% Similarity=0.261 Sum_probs=12.2
Q ss_pred CCCCCCCceEEEec
Q 024799 158 NHRLKEGETIRINV 171 (262)
Q Consensus 158 D~sLKeGeTI~Ini 171 (262)
+++|++|+.|.|--
T Consensus 23 eLsf~~Gd~i~v~~ 36 (68)
T 1tg0_A 23 DLNFEKDQEIIVTS 36 (68)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred CCCCCCCCEEEEEE
Confidence 69999999998864
No 51
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}
Probab=21.16 E-value=43 Score=23.10 Aligned_cols=15 Identities=13% Similarity=0.333 Sum_probs=13.0
Q ss_pred CCCCCCCceEEEecC
Q 024799 158 NHRLKEGETIRINVK 172 (262)
Q Consensus 158 D~sLKeGeTI~Ini~ 172 (262)
+++|++|+.|.|--+
T Consensus 15 eLs~~~Gd~i~v~~~ 29 (73)
T 2kxd_A 15 EVTMKKGDILTLLNS 29 (73)
T ss_dssp CCCBCTTCEEEEEEC
T ss_pred EeeEcCCCEEEEEEe
Confidence 699999999999654
No 52
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=21.13 E-value=62 Score=21.19 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=12.9
Q ss_pred CCCCCCCceEEEecC
Q 024799 158 NHRLKEGETIRINVK 172 (262)
Q Consensus 158 D~sLKeGeTI~Ini~ 172 (262)
+++|++|+.|.|--.
T Consensus 19 eLs~~~Gd~i~v~~~ 33 (60)
T 1oot_A 19 DLPFRKGDVITILKK 33 (60)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred EeeEcCCCEEEEEEe
Confidence 699999999998654
No 53
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=21.11 E-value=44 Score=22.10 Aligned_cols=15 Identities=13% Similarity=0.357 Sum_probs=12.6
Q ss_pred CCCCCCCceEEEecC
Q 024799 158 NHRLKEGETIRINVK 172 (262)
Q Consensus 158 D~sLKeGeTI~Ini~ 172 (262)
+++|++|+.|.|--.
T Consensus 22 eLs~~~Gd~i~v~~~ 36 (60)
T 2gnc_A 22 ELSFKKGASLLLYHR 36 (60)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CcCCCCCCEEEEEEe
Confidence 589999999988653
No 54
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=21.01 E-value=44 Score=22.18 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=13.0
Q ss_pred CCCCCCCceEEEecC
Q 024799 158 NHRLKEGETIRINVK 172 (262)
Q Consensus 158 D~sLKeGeTI~Ini~ 172 (262)
+++|++|+.|.|--.
T Consensus 21 eLs~~~Gd~i~v~~~ 35 (62)
T 1k4u_S 21 DLEFQEGDIILVLSK 35 (62)
T ss_dssp BCCBCSSCEEEEEEE
T ss_pred CccCCCCCEEEEEEe
Confidence 699999999998754
No 55
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=20.40 E-value=47 Score=21.53 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=12.9
Q ss_pred CCCCCCCceEEEecC
Q 024799 158 NHRLKEGETIRINVK 172 (262)
Q Consensus 158 D~sLKeGeTI~Ini~ 172 (262)
+++|++|+.|.|--.
T Consensus 17 eLs~~~Gd~i~v~~~ 31 (58)
T 1zuy_A 17 ELPLKKGDVIYITRE 31 (58)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred cCCCCCCCEEEEEEe
Confidence 599999999998654
No 56
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=20.20 E-value=46 Score=22.55 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=12.6
Q ss_pred CCCCCCCceEEEecC
Q 024799 158 NHRLKEGETIRINVK 172 (262)
Q Consensus 158 D~sLKeGeTI~Ini~ 172 (262)
+++|++|+.|.|--.
T Consensus 19 eLsf~~Gd~i~v~~~ 33 (67)
T 2bzy_A 19 ALALEVGDIVKVTRM 33 (67)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred ccccCCCCEEEEEEe
Confidence 699999999998543
No 57
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}
Probab=20.18 E-value=47 Score=22.41 Aligned_cols=14 Identities=14% Similarity=0.339 Sum_probs=12.2
Q ss_pred CCCCCCCceEEEec
Q 024799 158 NHRLKEGETIRINV 171 (262)
Q Consensus 158 D~sLKeGeTI~Ini 171 (262)
+++|++|+.|.|--
T Consensus 23 eLs~~~Gd~i~v~~ 36 (67)
T 2kxc_A 23 LLSFAQGDVITLLI 36 (67)
T ss_dssp BCCBCTTCEEEESS
T ss_pred CCcCCCCCEEEEeE
Confidence 59999999999854
No 58
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=20.18 E-value=47 Score=22.10 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=12.7
Q ss_pred CCCCCCCceEEEecC
Q 024799 158 NHRLKEGETIRINVK 172 (262)
Q Consensus 158 D~sLKeGeTI~Ini~ 172 (262)
+++|++|+.|.|--+
T Consensus 17 eLs~~~Gd~i~v~~~ 31 (62)
T 2j6f_A 17 ELTIRVGEIIRNVKK 31 (62)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CcCCcCCCEEEEEEe
Confidence 599999999998654
No 59
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=20.11 E-value=68 Score=20.78 Aligned_cols=15 Identities=40% Similarity=0.601 Sum_probs=12.8
Q ss_pred CCCCCCCceEEEecC
Q 024799 158 NHRLKEGETIRINVK 172 (262)
Q Consensus 158 D~sLKeGeTI~Ini~ 172 (262)
+++|++|+.|.|--.
T Consensus 19 eLs~~~Gd~i~v~~~ 33 (58)
T 2drm_A 19 ELTFKEGDTIIVHQK 33 (58)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred CcCCCCCCEEEEEEe
Confidence 599999999998654
No 60
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}
Probab=20.08 E-value=47 Score=22.54 Aligned_cols=15 Identities=7% Similarity=0.344 Sum_probs=12.9
Q ss_pred CCCCCCCceEEEecC
Q 024799 158 NHRLKEGETIRINVK 172 (262)
Q Consensus 158 D~sLKeGeTI~Ini~ 172 (262)
+++|++|+.|.|--.
T Consensus 19 eLs~~~Gd~i~v~~~ 33 (69)
T 1wyx_A 19 ELSFRKGDIMTVLEQ 33 (69)
T ss_dssp BCCBCTTCEEEEEET
T ss_pred ccCCcCCCEEEEeEC
Confidence 699999999998654
No 61
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=20.05 E-value=47 Score=22.39 Aligned_cols=14 Identities=36% Similarity=0.446 Sum_probs=12.0
Q ss_pred CCCCCCCceEEEec
Q 024799 158 NHRLKEGETIRINV 171 (262)
Q Consensus 158 D~sLKeGeTI~Ini 171 (262)
+++|++|+.|.|--
T Consensus 24 ~Lsf~~Gd~i~v~~ 37 (67)
T 3rnj_A 24 LLSFKEGDLITLLV 37 (67)
T ss_dssp BCCBCTTCEEEECS
T ss_pred CccCCCCCEEEEee
Confidence 49999999999853
Done!