Query 024800
Match_columns 262
No_of_seqs 120 out of 447
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 07:30:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 1E-92 2.2E-97 604.5 16.9 238 1-242 1-238 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 4E-90 8.8E-95 616.6 25.3 239 6-246 1-240 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 8.3E-86 1.8E-90 588.0 23.4 235 6-243 1-235 (236)
4 KOG0841 Multifunctional chaper 100.0 5.1E-81 1.1E-85 546.8 20.8 238 5-245 1-239 (247)
5 PF13424 TPR_12: Tetratricopep 96.3 0.01 2.2E-07 42.8 5.3 55 150-206 21-75 (78)
6 KOG1840 Kinesin light chain [C 93.8 7.8 0.00017 38.8 18.5 189 7-210 200-400 (508)
7 TIGR00990 3a0801s09 mitochondr 92.6 4.5 9.7E-05 40.7 15.2 54 150-205 483-536 (615)
8 PF12862 Apc5: Anaphase-promot 90.9 3.2 6.9E-05 31.4 9.4 71 134-210 3-74 (94)
9 TIGR00990 3a0801s09 mitochondr 87.5 32 0.0007 34.5 16.3 74 150-232 524-597 (615)
10 PF04781 DUF627: Protein of un 84.2 2.8 6E-05 33.6 5.4 41 124-164 33-74 (111)
11 PF13414 TPR_11: TPR repeat; P 84.0 5.3 0.00011 27.5 6.4 47 150-205 19-66 (69)
12 PF12569 NARP1: NMDA receptor- 80.0 69 0.0015 32.1 18.4 61 144-205 156-222 (517)
13 PF13374 TPR_10: Tetratricopep 79.8 1.8 4E-05 26.6 2.4 23 151-173 19-41 (42)
14 KOG4162 Predicted calmodulin-b 72.9 1.3E+02 0.0028 31.7 14.9 166 18-206 335-507 (799)
15 PRK09782 bacteriophage N4 rece 69.2 1.5E+02 0.0033 32.2 14.8 26 9-34 512-537 (987)
16 TIGR02917 PEP_TPR_lipo putativ 69.1 1.3E+02 0.0028 30.1 15.1 57 8-70 705-761 (899)
17 PF07719 TPR_2: Tetratricopept 68.0 12 0.00025 21.9 3.8 26 9-34 4-29 (34)
18 PF13174 TPR_6: Tetratricopept 67.7 10 0.00022 21.9 3.5 27 8-34 2-28 (33)
19 PF13431 TPR_17: Tetratricopep 66.4 5.8 0.00013 24.4 2.2 34 156-198 1-34 (34)
20 KOG1840 Kinesin light chain [C 64.2 1.6E+02 0.0036 29.5 18.5 191 8-217 285-490 (508)
21 PF13424 TPR_12: Tetratricopep 63.7 14 0.00031 26.0 4.2 37 172-210 1-37 (78)
22 PF13428 TPR_14: Tetratricopep 61.1 19 0.0004 23.0 4.0 27 8-34 3-29 (44)
23 PF01765 RRF: Ribosome recycli 59.3 39 0.00085 28.4 6.8 72 40-112 85-156 (165)
24 CHL00033 ycf3 photosystem I as 58.1 86 0.0019 25.5 8.6 69 150-227 88-162 (168)
25 PRK15363 pathogenicity island 57.5 75 0.0016 26.9 8.1 73 146-231 81-155 (157)
26 PF13181 TPR_8: Tetratricopept 56.5 30 0.00065 20.2 4.2 27 8-34 3-29 (34)
27 PF13371 TPR_9: Tetratricopept 55.7 51 0.0011 22.6 5.9 45 151-204 12-56 (73)
28 PRK10049 pgaA outer membrane p 55.6 2.6E+02 0.0057 29.1 14.2 56 9-70 86-141 (765)
29 TIGR02521 type_IV_pilW type IV 55.0 1.1E+02 0.0024 24.6 16.7 166 7-206 32-198 (234)
30 PRK14720 transcript cleavage f 53.0 48 0.0011 35.6 7.5 84 115-208 94-180 (906)
31 PF13176 TPR_7: Tetratricopept 52.0 29 0.00063 21.2 3.7 26 9-34 2-27 (36)
32 KOG4759 Ribosome recycling fac 51.5 67 0.0015 29.5 7.2 71 40-113 183-253 (263)
33 PF14559 TPR_19: Tetratricopep 51.3 72 0.0016 21.4 6.0 44 151-203 8-51 (68)
34 PF06552 TOM20_plant: Plant sp 51.1 52 0.0011 28.7 6.2 88 131-225 32-122 (186)
35 COG0233 Frr Ribosome recycling 50.6 61 0.0013 28.3 6.6 73 40-113 105-177 (187)
36 PF00515 TPR_1: Tetratricopept 50.0 37 0.0008 19.9 3.8 26 9-34 4-29 (34)
37 CHL00033 ycf3 photosystem I as 48.8 66 0.0014 26.2 6.5 50 150-205 51-100 (168)
38 TIGR02917 PEP_TPR_lipo putativ 45.8 3.2E+02 0.007 27.3 17.0 44 7-54 602-645 (899)
39 COG3947 Response regulator con 45.4 34 0.00074 32.3 4.4 44 190-238 292-335 (361)
40 PRK12794 flaF flagellar biosyn 45.0 30 0.00066 28.0 3.7 53 186-238 8-60 (122)
41 TIGR00496 frr ribosome recycli 44.2 88 0.0019 26.8 6.6 73 40-113 94-166 (176)
42 PF03755 YicC_N: YicC-like fam 44.1 45 0.00098 27.8 4.7 62 152-213 82-147 (159)
43 cd00520 RRF Ribosome recycling 44.1 77 0.0017 27.2 6.3 72 40-112 99-170 (179)
44 PRK00083 frr ribosome recyclin 43.5 91 0.002 27.0 6.6 72 40-112 103-174 (185)
45 TIGR02795 tol_pal_ybgF tol-pal 41.8 1.1E+02 0.0024 22.3 6.3 50 151-206 56-105 (119)
46 PF12895 Apc3: Anaphase-promot 40.0 50 0.0011 23.7 3.9 44 156-202 40-83 (84)
47 PF10083 DUF2321: Uncharacteri 39.8 1.9E+02 0.004 24.6 7.6 34 24-60 83-116 (158)
48 PRK02603 photosystem I assembl 39.3 1.2E+02 0.0026 24.8 6.7 49 151-205 52-100 (172)
49 PRK12793 flaF flagellar biosyn 38.7 39 0.00084 27.1 3.3 52 186-238 6-58 (115)
50 PF12688 TPR_5: Tetratrico pep 37.7 1.7E+02 0.0036 23.4 6.9 50 151-206 18-67 (120)
51 PF08424 NRDE-2: NRDE-2, neces 36.0 2.8E+02 0.0061 25.7 9.2 98 150-254 118-226 (321)
52 PF13432 TPR_16: Tetratricopep 34.1 1.4E+02 0.0031 19.8 6.8 53 11-68 2-54 (65)
53 smart00028 TPR Tetratricopepti 33.4 75 0.0016 16.4 3.9 26 9-34 4-29 (34)
54 PRK11788 tetratricopeptide rep 33.1 3.8E+02 0.0082 24.4 15.8 24 10-33 73-96 (389)
55 PF14559 TPR_19: Tetratricopep 32.5 62 0.0014 21.7 3.3 53 18-75 3-55 (68)
56 PF13414 TPR_11: TPR repeat; P 32.3 1.6E+02 0.0034 19.8 6.8 45 7-55 4-48 (69)
57 KOG1126 DNA-binding cell divis 32.0 1E+02 0.0023 31.7 5.8 119 129-261 484-603 (638)
58 PLN03088 SGT1, suppressor of 31.2 1.2E+02 0.0026 28.5 5.9 44 156-203 51-96 (356)
59 PRK15331 chaperone protein Sic 31.1 2.4E+02 0.0052 24.1 7.1 73 148-235 85-157 (165)
60 PRK11447 cellulose synthase su 30.5 7.6E+02 0.016 27.1 17.9 27 8-34 114-140 (1157)
61 TIGR03504 FimV_Cterm FimV C-te 30.0 86 0.0019 20.7 3.4 40 10-51 3-42 (44)
62 COG4499 Predicted membrane pro 29.9 1.1E+02 0.0023 29.9 5.2 48 175-222 230-282 (434)
63 PF12895 Apc3: Anaphase-promot 28.3 1.1E+02 0.0023 21.9 4.0 20 11-30 63-82 (84)
64 KOG0553 TPR repeat-containing 27.6 1.6E+02 0.0035 27.6 5.9 44 151-203 98-141 (304)
65 KOG2715 Uncharacterized conser 26.9 59 0.0013 28.2 2.7 75 167-260 67-141 (210)
66 PRK10370 formate-dependent nit 26.7 1.7E+02 0.0037 25.0 5.7 47 151-205 90-138 (198)
67 PF13371 TPR_9: Tetratricopept 26.5 1.3E+02 0.0027 20.5 4.0 56 13-73 2-57 (73)
68 KOG0687 26S proteasome regulat 26.1 3.5E+02 0.0075 26.1 7.8 78 130-210 53-137 (393)
69 PF08717 nsp8: nsp8 replicase; 25.7 56 0.0012 28.6 2.3 38 149-206 14-51 (199)
70 PF09986 DUF2225: Uncharacteri 25.4 4.6E+02 0.01 22.9 8.4 60 149-210 92-154 (214)
71 KOG2002 TPR-containing nuclear 24.1 1.7E+02 0.0036 31.8 5.8 52 155-210 250-303 (1018)
72 PRK02603 photosystem I assembl 23.6 4E+02 0.0088 21.6 8.2 13 151-163 89-101 (172)
73 PRK15326 type III secretion sy 23.6 1.6E+02 0.0034 22.3 4.1 36 150-187 20-59 (80)
74 KOG1107 Membrane coat complex 23.6 2.7E+02 0.0058 29.3 7.0 42 150-191 656-698 (760)
75 PF02259 FAT: FAT domain; Int 23.5 5.4E+02 0.012 23.0 13.3 28 7-34 147-174 (352)
76 PRK11820 hypothetical protein; 23.2 1.5E+02 0.0033 27.4 4.9 60 154-214 85-145 (288)
77 cd09235 V_Alix Middle V-domain 23.1 6.2E+02 0.014 23.6 10.0 135 83-238 199-337 (339)
78 PF07309 FlaF: Flagellar prote 23.1 93 0.002 24.7 3.0 46 192-238 12-57 (113)
79 KOG0570 Transcriptional coacti 22.4 4.2E+02 0.009 23.6 7.1 26 45-70 109-139 (223)
80 PF11568 Med29: Mediator compl 21.8 2.4E+02 0.0051 23.7 5.3 49 54-106 10-69 (148)
81 PF10516 SHNi-TPR: SHNi-TPR; 21.7 1.1E+02 0.0023 19.6 2.6 37 132-171 2-38 (38)
82 PRK11447 cellulose synthase su 21.4 1.1E+03 0.024 25.9 15.5 56 11-71 356-411 (1157)
83 COG4840 Uncharacterized protei 21.3 3.4E+02 0.0073 19.9 6.0 50 1-54 1-66 (71)
84 PF03635 Vps35: Vacuolar prote 21.3 5.8E+02 0.013 27.0 9.2 41 149-189 700-741 (762)
85 PF14689 SPOB_a: Sensor_kinase 21.0 1.8E+02 0.004 20.3 3.9 23 12-34 29-51 (62)
86 COG3063 PilF Tfp pilus assembl 21.0 1.4E+02 0.0031 27.1 4.1 46 150-204 85-130 (250)
87 PRK10370 formate-dependent nit 20.2 2.9E+02 0.0064 23.5 5.9 61 6-71 107-170 (198)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=1e-92 Score=604.46 Aligned_cols=238 Identities=70% Similarity=1.091 Sum_probs=231.6
Q ss_pred CCCCcHHhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhcccc
Q 024800 1 MGTPTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKN 80 (262)
Q Consensus 1 ~~~~~re~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieq~e~~~~~ 80 (262)
|. ..||+.+|+|||++|||||+||++-||.++. .+ .+|+.+|||||||||||+||.||+|||++++++||++++++
T Consensus 1 Ms-~~rE~svylAkLaeqAERYe~MvenMk~vas--~~-~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~ 76 (268)
T COG5040 1 MS-TSREDSVYLAKLAEQAERYEEMVENMKLVAS--SG-QELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGN 76 (268)
T ss_pred CC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cc-chhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCC
Confidence 44 3599999999999999999999999999997 56 99999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHhhhccccchhhhhccccchHHHHHHHHHHHHHHH
Q 024800 81 EEHVSLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAA 160 (262)
Q Consensus 81 ~~~~~~i~~yr~ki~~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~e~A~~aY~~A 160 (262)
..++.+|+.||++|++||..||++|+++|+++|||.+++.|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|
T Consensus 77 ~~qv~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~A 156 (268)
T COG5040 77 THQVELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAA 156 (268)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHHHHHHHHHhhHhhhhccc
Q 024800 161 QDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDM 240 (262)
Q Consensus 161 ~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~~~ds~~IlqLLrdNl~~W~~e~ 240 (262)
.++|...||||||||||||||||||||||++++++||.+||+|||+||++||+|+||+|+|+|+||||||||||+|+++.
T Consensus 157 seiA~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~ 236 (268)
T COG5040 157 SEIATTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDA 236 (268)
T ss_pred HHHhhccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred Cc
Q 024800 241 QV 242 (262)
Q Consensus 241 ~~ 242 (262)
+.
T Consensus 237 e~ 238 (268)
T COG5040 237 EY 238 (268)
T ss_pred cc
Confidence 53
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=4e-90 Score=616.58 Aligned_cols=239 Identities=77% Similarity=1.145 Sum_probs=229.7
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHhhccC-CCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhcccchhhh
Q 024800 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTSST-PATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHV 84 (262)
Q Consensus 6 re~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~-~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieq~e~~~~~~~~~ 84 (262)
|++++|+|||++|||||+||+++||++++ . ++.+||.||||||||||||+||++|+|||+|+++++++..+|++.++
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~--~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~ 78 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAK--TVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHV 78 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHh--hcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHH
Confidence 68999999999999999999999999998 5 42599999999999999999999999999999999998878887788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHhhhccccchhhhhccccchHHHHHHHHHHHHHHHHHHH
Q 024800 85 SLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIA 164 (262)
Q Consensus 85 ~~i~~yr~ki~~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~e~A~~aY~~A~~~a 164 (262)
+.+++||++|++||..+|++||++||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|
T Consensus 79 ~~~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a 158 (244)
T smart00101 79 ASIKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIA 158 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHHHHHHHHHhhHhhhhcccCcCc
Q 024800 165 LTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQVSA 244 (262)
Q Consensus 165 ~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~~~ds~~IlqLLrdNl~~W~~e~~~~~ 244 (262)
+++||||||+||||+||||||||||+|++++||++|++|||+|++++|+++|++|+|+++|||||||||++|+++.++++
T Consensus 159 ~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~~~ 238 (244)
T smart00101 159 LAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDDG 238 (244)
T ss_pred HccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCcch
Confidence 98999999999999999999999999999999999999999999999999999999999999999999999999866665
Q ss_pred cc
Q 024800 245 IF 246 (262)
Q Consensus 245 ~~ 246 (262)
.+
T Consensus 239 ~~ 240 (244)
T smart00101 239 AD 240 (244)
T ss_pred hh
Confidence 43
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=8.3e-86 Score=587.96 Aligned_cols=235 Identities=68% Similarity=1.062 Sum_probs=223.0
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhcccchhhhH
Q 024800 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVS 85 (262)
Q Consensus 6 re~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieq~e~~~~~~~~~~ 85 (262)
|++++|||||++|||||+||+++||++++ ++ ++||.|||||||+||||+||++|+|||+|++++++++.+|++..++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~--~~-~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~ 77 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIE--MN-PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVK 77 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH--TS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHc--cC-CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHH
Confidence 89999999999999999999999999999 76 9999999999999999999999999999999999999888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHhhhccccchhhhhccccchHHHHHHHHHHHHHHHHHHHh
Q 024800 86 LVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIAL 165 (262)
Q Consensus 86 ~i~~yr~ki~~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~e~A~~aY~~A~~~a~ 165 (262)
.+++||++|++||..+|++|+++||++|+|.+++++++|||+|||||||||+|||..++++++++++|.++|++|+++|+
T Consensus 78 ~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 157 (236)
T PF00244_consen 78 LIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAK 157 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHHHHHHHHHhhHhhhhcccCcC
Q 024800 166 TDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQVS 243 (262)
Q Consensus 166 ~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~~~ds~~IlqLLrdNl~~W~~e~~~~ 243 (262)
++||||||+||||+||||||||||+|++++||+||++|||+|++++|+++|++|+|+++|||||||||++|+++.+++
T Consensus 158 ~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~~ 235 (236)
T PF00244_consen 158 KELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEEE 235 (236)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT----
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcccccccC
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999998765
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-81 Score=546.75 Aligned_cols=238 Identities=73% Similarity=1.092 Sum_probs=231.7
Q ss_pred cHHhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhcccchhhh
Q 024800 5 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHV 84 (262)
Q Consensus 5 ~re~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieq~e~~~~~~~~~ 84 (262)
+|++++++|++++|||||+||+.+||.+++ .+ .+||.|||||||++|||+||++|++||+|++|||+++.+|++.++
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~--~~-~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v 77 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAE--LD-VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKV 77 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcc--cc-hhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHH
Confidence 489999999999999999999999999998 66 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC-CchhhhHhhhccccchhhhhccccchHHHHHHHHHHHHHHHHHH
Q 024800 85 SLVKDYRSKVESELSDVCGSILKLLDSHLVPSATA-GESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDI 163 (262)
Q Consensus 85 ~~i~~yr~ki~~EL~~~C~eii~lId~~Lip~~~~-~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~e~A~~aY~~A~~~ 163 (262)
..+..||++|+.||..+|++++.++|.+|+|+++. .|++|||+|||||||||++||..|++|+++++.++++|+.|.++
T Consensus 78 ~~i~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~i 157 (247)
T KOG0841|consen 78 KMIKEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEI 157 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988 78999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHHHHHHHHHhhHhhhhcccCcC
Q 024800 164 ALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQVS 243 (262)
Q Consensus 164 a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~~~ds~~IlqLLrdNl~~W~~e~~~~ 243 (262)
|+..|+|||||||||+||||||||||++.|++||.|||+|||+||.++|++++++|+|||+||||||||+|+|+++.+++
T Consensus 158 a~~~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~ 237 (247)
T KOG0841|consen 158 AKAELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGD 237 (247)
T ss_pred HHhcCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred cc
Q 024800 244 AI 245 (262)
Q Consensus 244 ~~ 245 (262)
.-
T Consensus 238 ~~ 239 (247)
T KOG0841|consen 238 EK 239 (247)
T ss_pred cc
Confidence 43
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.28 E-value=0.01 Score=42.82 Aligned_cols=55 Identities=25% Similarity=0.336 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHH
Q 024800 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEE 206 (262)
Q Consensus 150 ~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 206 (262)
-++|.+.|++|+++ ...+++.||...-...|.+..++. +|+.++|++..++|++-
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 36799999999999 567899988888888888888877 79999999999998764
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=93.77 E-value=7.8 Score=38.78 Aligned_cols=189 Identities=17% Similarity=0.177 Sum_probs=124.1
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhcc--C-CCCCCCH-HHHHHHHHHHhhhhhhhhhHHHHHHH-Hhhhhhcccc-
Q 024800 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSS--T-PATELTV-EERNLLSVAYKNVIGSLRAAWRIISS-IEQKEEGRKN- 80 (262)
Q Consensus 7 e~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~--~-~~~~Ls~-eERnLls~ayKn~i~~~R~s~R~l~~-ieq~e~~~~~- 80 (262)
..+.++|.+..+.|+|+.++...|+.+++- . +...+-. .-.+-|++.|-+. +..+.|..++.. +...+...|.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345678889999999999999999887641 1 1122222 2344466666553 456666666642 3334444443
Q ss_pred -hhhhHHHHH-----HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHhhhccccchhhhhccccchHHHHHHHHH
Q 024800 81 -EEHVSLVKD-----YRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTM 154 (262)
Q Consensus 81 -~~~~~~i~~-----yr~ki~~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~e~A~ 154 (262)
+.....+.+ |+.-=-.|-...|+.+++|..+.+. +..++-..- +.++..-.....-.+.|.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~--~~~~~v~~~-----------l~~~~~~~~~~~~~Eea~ 345 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG--ASHPEVAAQ-----------LSELAAILQSMNEYEEAK 345 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc--cChHHHHHH-----------HHHHHHHHHHhcchhHHH
Confidence 333332232 3333346788999999999998333 332332211 122222222222357789
Q ss_pred HHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 024800 155 LSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAE 210 (262)
Q Consensus 155 ~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ 210 (262)
..|+.|+++....+.+-||.-=|.--|+++-|+- +|..++|.++.++|+...-+-
T Consensus 346 ~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~ 400 (508)
T KOG1840|consen 346 KLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILREL 400 (508)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhc
Confidence 9999999999888999999999999999999886 799999999999998877554
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.62 E-value=4.5 Score=40.67 Aligned_cols=54 Identities=11% Similarity=0.139 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 024800 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFE 205 (262)
Q Consensus 150 ~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 205 (262)
.+.|.+.|++|+++.. ..++.++..+ ..+|.+..+|+-.|+.++|..+.++|+.
T Consensus 483 ~~~A~~~~~~Al~l~p-~~~~~~~~~~-~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 483 FDEAIEKFDTAIELEK-ETKPMYMNVL-PLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHHhcCC-ccccccccHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4668888888887653 2333333222 2355566666667888888887777654
No 8
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.94 E-value=3.2 Score=31.44 Aligned_cols=71 Identities=21% Similarity=0.229 Sum_probs=50.9
Q ss_pred chhhhhccccchHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHhHh-hhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 024800 134 YRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLA-LNFSVFYYEILNSSEKACTMAKQAFEEAIAE 210 (262)
Q Consensus 134 yRYlaE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt~PirLgLa-LN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ 210 (262)
.+|+--+..++ -..|.+...+.++.+.....+.++..+..+ ||.+.+++. +|++++|+...++|++-|-..
T Consensus 3 l~~~~~~~~~d-----y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 3 LRYLNALRSGD-----YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHH
Confidence 34544444443 245778888888888777776654455544 788887776 699999999999988888764
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=87.46 E-value=32 Score=34.53 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHHHHHHHH
Q 024800 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLL 229 (262)
Q Consensus 150 ~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~~~ds~~IlqLL 229 (262)
.+.|.+.|++|+. +.|.++. ..++.+-.++. .|+.++|+....+|.+-+-+.-+-+.--++.+++.+-..+
T Consensus 524 ~~eA~~~~~kAl~-----l~p~~~~---a~~~la~~~~~-~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~ 594 (615)
T TIGR00990 524 FIEAENLCEKALI-----IDPECDI---AVATMAQLLLQ-QGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQV 594 (615)
T ss_pred HHHHHHHHHHHHh-----cCCCcHH---HHHHHHHHHHH-ccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777765 4566653 22333444444 7999999998888776654422222223566767675555
Q ss_pred Hhh
Q 024800 230 RDN 232 (262)
Q Consensus 230 rdN 232 (262)
+.+
T Consensus 595 ~~~ 597 (615)
T TIGR00990 595 QED 597 (615)
T ss_pred HHH
Confidence 544
No 10
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=84.18 E-value=2.8 Score=33.57 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=33.5
Q ss_pred hhHhhhccccchhhhhcccc-chHHHHHHHHHHHHHHHHHHH
Q 024800 124 VFYLKMKGDYYRYLAEFKVG-DERKAAAENTMLSYKAAQDIA 164 (262)
Q Consensus 124 Vfy~KmkgDyyRYlaE~~~~-~~~~~~~e~A~~aY~~A~~~a 164 (262)
.|-+...|+.+..+|....+ +-+....-.|.+||.+|..++
T Consensus 33 ~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 33 WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 48888999999999987664 556778889999999997544
No 11
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=84.00 E-value=5.3 Score=27.49 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhC-CHHHHHHHHHHHHH
Q 024800 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILN-SSEKACTMAKQAFE 205 (262)
Q Consensus 150 ~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~-~~~~A~~iAk~afd 205 (262)
-+.|...|++|+++ +|-.-.+..|.++-++. +| ++++|+...++|+.
T Consensus 19 ~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 36689999999975 24444577888888776 57 79999998888764
No 12
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=80.03 E-value=69 Score=32.15 Aligned_cols=61 Identities=25% Similarity=0.263 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhcCC------CCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 024800 144 DERKAAAENTMLSYKAAQDIALTDLA------PTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFE 205 (262)
Q Consensus 144 ~~~~~~~e~A~~aY~~A~~~a~~~L~------pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 205 (262)
..+..+++.-...|...++... .++ +..|.-+-.++.|-.-+|+.+|+.++|++...+|++
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3455666666666666554432 233 335777888888888899999999999998887754
No 13
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.76 E-value=1.8 Score=26.56 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCc
Q 024800 151 ENTMLSYKAAQDIALTDLAPTHP 173 (262)
Q Consensus 151 e~A~~aY~~A~~~a~~~L~pt~P 173 (262)
+.|...|++|+.+.+.-++|.||
T Consensus 19 ~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 19 EEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHH---------
T ss_pred chhhHHHHHHHHHHHHHhccccc
Confidence 66999999999999888899998
No 14
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=72.89 E-value=1.3e+02 Score=31.73 Aligned_cols=166 Identities=19% Similarity=0.231 Sum_probs=89.8
Q ss_pred HhcCHHHHHHHHHHHhhccCCCCCCCHHHH-HHHHHHHhhhhhhhhhHHHHHHHHhhhhhcccchhhhHHHHHHHH----
Q 024800 18 QAERYEEMVKFMDSLVTSSTPATELTVEER-NLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRS---- 92 (262)
Q Consensus 18 q~eRy~Dm~~~mk~~i~~~~~~~~Ls~eER-nLls~ayKn~i~~~R~s~R~l~~ieq~e~~~~~~~~~~~i~~yr~---- 92 (262)
.+|+|....+++.+.+. .-+..-|| +.++.+|-. .++--.+.+.+..--.+.+ .. +...-.+-.++.
T Consensus 335 ~~g~f~~lae~fE~~~~-----~~~~~~e~w~~~als~sa-ag~~s~Av~ll~~~~~~~~-~p-s~~s~~Lmasklc~e~ 406 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALP-----FSFGEHERWYQLALSYSA-AGSDSKAVNLLRESLKKSE-QP-SDISVLLMASKLCIER 406 (799)
T ss_pred HHHHHHHHHHHHHHHhH-----hhhhhHHHHHHHHHHHHH-hccchHHHHHHHhhccccc-CC-CcchHHHHHHHHHHhc
Confidence 35778788887777653 33443343 334444432 2333445555432222211 01 111112222222
Q ss_pred -HHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHhhhccccchhhhhccc-cchHHHHHHHHHHHHHHHHHHHhhcCCC
Q 024800 93 -KVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKV-GDERKAAAENTMLSYKAAQDIALTDLAP 170 (262)
Q Consensus 93 -ki~~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~-~~~~~~~~e~A~~aY~~A~~~a~~~L~p 170 (262)
+.-+|..++...++++... .. ..-+---+++-|=-|-..|--.+ .++|...-.++.++|++|.+ +.|
T Consensus 407 l~~~eegldYA~kai~~~~~----~~--~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~ 475 (799)
T KOG4162|consen 407 LKLVEEGLDYAQKAISLLGG----QR--SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDP 475 (799)
T ss_pred hhhhhhHHHHHHHHHHHhhh----hh--hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCC
Confidence 2235666666666653311 11 11112234566777766665444 57788899999999999974 678
Q ss_pred CCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHH
Q 024800 171 THPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEE 206 (262)
Q Consensus 171 t~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 206 (262)
+|| -...+.|++|-+ .++.+.|.+.++.++.-
T Consensus 476 ~dp---~~if~lalq~A~-~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 476 TDP---LVIFYLALQYAE-QRQLTSALDYAREALAL 507 (799)
T ss_pred CCc---hHHHHHHHHHHH-HHhHHHHHHHHHHHHHh
Confidence 999 334555666655 58888888887776553
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=69.15 E-value=1.5e+02 Score=32.22 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 024800 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (262)
Q Consensus 9 l~~~Aklaeq~eRy~Dm~~~mk~~i~ 34 (262)
.+.+|.+..+.|+|++++...++++.
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 44556666677777777777777654
No 16
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=69.12 E-value=1.3e+02 Score=30.11 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 024800 8 QYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISS 70 (262)
Q Consensus 8 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ 70 (262)
-...++.+....|+|++++..+++.+. .. |.- +-..-+..+|.. .+....+...+..
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~-~~~--~~~~~l~~~~~~-~g~~~~A~~~~~~ 761 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALK--RA-PSS--QNAIKLHRALLA-SGNTAEAVKTLEA 761 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hC-CCc--hHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 445677888888888888888888876 33 322 222333344432 3444455555544
No 17
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=67.96 E-value=12 Score=21.86 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 024800 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (262)
Q Consensus 9 l~~~Aklaeq~eRy~Dm~~~mk~~i~ 34 (262)
+..++.+..+.|+|+++++++++.+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56789999999999999999999987
No 18
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=67.67 E-value=10 Score=21.88 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 024800 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (262)
Q Consensus 8 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~ 34 (262)
-+..+|.+..+.|+++++++.++.++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 356789999999999999999999997
No 19
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=66.37 E-value=5.8 Score=24.41 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHH
Q 024800 156 SYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACT 198 (262)
Q Consensus 156 aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~ 198 (262)
+|++|++ +.|.|| ....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie-----~~P~n~---~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIE-----LNPNNA---EAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHH-----HCCCCH---HHHHHHHHHHHH-CcCHHhhcC
Confidence 4677775 345555 456788888886 699999863
No 20
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=64.16 E-value=1.6e+02 Score=29.52 Aligned_cols=191 Identities=17% Similarity=0.142 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhcc-CCCCCCCHHHHHHHHH---------HHhhhhhhhhhHHHHHHHHhhhhhc
Q 024800 8 QYVYLAKLAEQAERYEEMVKFMDSLVTSS-TPATELTVEERNLLSV---------AYKNVIGSLRAAWRIISSIEQKEEG 77 (262)
Q Consensus 8 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~-~~~~~Ls~eERnLls~---------ayKn~i~~~R~s~R~l~~ieq~e~~ 77 (262)
-+.-+|.+.-..|+|+++-.+++..+++. ...+...++--..|+. .|...+.-.+.+.+++. ....
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~---~~~g- 360 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL---DAPG- 360 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH---hhcc-
Confidence 35567888888899999999999998764 1102333332222222 12233333344444432 2211
Q ss_pred ccch----hhhHHHHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHhhhccccchhhhhccccchHHHHHHH
Q 024800 78 RKNE----EHVSLVKDY-RSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAEN 152 (262)
Q Consensus 78 ~~~~----~~~~~i~~y-r~ki~~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~e~ 152 (262)
..+. .+.++-.-| +.-=-+|=..+-+.+|.+.....=. .+...-.+++.|-.+|+|-- -.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~--~~~~~~~~l~~la~~~~~~k-----------~~~~ 427 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK--KDYGVGKPLNQLAEAYEELK-----------KYEE 427 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC--cChhhhHHHHHHHHHHHHhc-----------ccch
Confidence 1110 001111111 1111245556666777666544321 22345567778877774321 2345
Q ss_pred HHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCC
Q 024800 153 TMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEE 217 (262)
Q Consensus 153 A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee 217 (262)
|.+.|.+|..+. ....|.||--++..+|.+.- |+-+|+.++|++++..+..-=...+++.+.+
T Consensus 428 a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~-Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 428 AEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAAL-YRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred HHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 888999999999 78999999999999999986 5668999999999999886655565555543
No 21
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=63.70 E-value=14 Score=25.99 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=30.0
Q ss_pred CchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 024800 172 HPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAE 210 (262)
Q Consensus 172 ~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ 210 (262)
||.......|.+..|++ +|+.++|+...++|++- ...
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~ 37 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQ 37 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHH
Confidence 78888888999998886 79999999999998887 554
No 22
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=61.06 E-value=19 Score=22.99 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 024800 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (262)
Q Consensus 8 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~ 34 (262)
-...+|+...+.|+++++++..+++++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356789999999999999999999997
No 23
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=59.29 E-value=39 Score=28.39 Aligned_cols=72 Identities=21% Similarity=0.210 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 024800 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSH 112 (262)
Q Consensus 40 ~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieq~e~~~~~~~~~~~i~~yr~ki~~EL~~~C~eii~lId~~ 112 (262)
|.+|.|-|.-+....|......|.++|.+..--.+.- ++.......-++-..+.+++|..+-++.+.-||..
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~l-kk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~ 156 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKL-KKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDEL 156 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999864322221 11000001234555667777777777777777654
No 24
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=58.07 E-value=86 Score=25.53 Aligned_cols=69 Identities=19% Similarity=0.041 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHH------HHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHH
Q 024800 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYY------EILNSSEKACTMAKQAFEEAIAELDTLGEESYKDST 223 (262)
Q Consensus 150 ~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~y------Ei~~~~~~A~~iAk~afd~Ai~~ld~l~ee~~~ds~ 223 (262)
.+.|..+|++|+.+ .|.+ .+...|.++.++ ..+|+.+.|....++|+.---. .-.++.+.+.++.
T Consensus 88 ~~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-a~~~~p~~~~~~~ 158 (168)
T CHL00033 88 HTKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ-AIALAPGNYIEAQ 158 (168)
T ss_pred HHHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH-HHHhCcccHHHHH
Confidence 35688899998865 3333 233445555555 2478888887777666542222 2224555566555
Q ss_pred HHHH
Q 024800 224 LIMQ 227 (262)
Q Consensus 224 ~Ilq 227 (262)
.-|.
T Consensus 159 ~~~~ 162 (168)
T CHL00033 159 NWLK 162 (168)
T ss_pred HHHH
Confidence 5443
No 25
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=57.49 E-value=75 Score=26.91 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCc--hHhHH
Q 024800 146 RKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEES--YKDST 223 (262)
Q Consensus 146 ~~~~~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~--~~ds~ 223 (262)
...--+.|.++|..|.. |.|.||- ...|.++-+.- +|+.+.|. ++|+.|+.--+..++.. ..-+.
T Consensus 81 ~~g~~~~AI~aY~~A~~-----L~~ddp~---~~~~ag~c~L~-lG~~~~A~----~aF~~Ai~~~~~~~~~~~l~~~A~ 147 (157)
T PRK15363 81 AQKHWGEAIYAYGRAAQ-----IKIDAPQ---APWAAAECYLA-CDNVCYAI----KALKAVVRICGEVSEHQILRQRAE 147 (157)
T ss_pred HHhhHHHHHHHHHHHHh-----cCCCCch---HHHHHHHHHHH-cCCHHHHH----HHHHHHHHHhccChhHHHHHHHHH
Confidence 33445778889988875 4556653 24555555553 68888765 57888887654443321 33366
Q ss_pred HHHHHHHh
Q 024800 224 LIMQLLRD 231 (262)
Q Consensus 224 ~IlqLLrd 231 (262)
..+..|.|
T Consensus 148 ~~L~~l~~ 155 (157)
T PRK15363 148 KMLQQLSD 155 (157)
T ss_pred HHHHHhhc
Confidence 66666655
No 26
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=56.55 E-value=30 Score=20.16 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 024800 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (262)
Q Consensus 8 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~ 34 (262)
-+..++++..+.|.++.++.++++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356789999999999999999999987
No 27
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=55.65 E-value=51 Score=22.58 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHH
Q 024800 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAF 204 (262)
Q Consensus 151 e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~af 204 (262)
+.|.++++.++.+ +|--..+-++++.+++. +|+.++|.....++.
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 4456666666543 45556667778888887 699999988766665
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=55.63 E-value=2.6e+02 Score=29.11 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 024800 9 YVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISS 70 (262)
Q Consensus 9 l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ 70 (262)
...+|.+.-..|++++++..+++++. .. |+- .+ ...+..++.. .+....+...+..
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~--~~-P~~-~~-~~~la~~l~~-~g~~~~Al~~l~~ 141 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVS--GA-PDK-AN-LLALAYVYKR-AGRHWDELRAMTQ 141 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hC-CCC-HH-HHHHHHHHHH-CCCHHHHHHHHHH
Confidence 44555555566666666666666665 32 322 22 5555555543 2445555555543
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=54.97 E-value=1.1e+02 Score=24.65 Aligned_cols=166 Identities=14% Similarity=0.065 Sum_probs=80.6
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhcccchhhhHH
Q 024800 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSL 86 (262)
Q Consensus 7 e~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieq~e~~~~~~~~~~~ 86 (262)
.-+..++...-..|+|+++++.+++.+. .. | -+..-...++..|-.. +....+...+........... ......
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~-p-~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~-~~~~~~ 105 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALE--HD-P-DDYLAYLALALYYQQL-GELEKAEDSFRRALTLNPNNG-DVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC-c-ccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCH-HHHHHH
Confidence 3456778888888999999999999987 33 3 3344445555555433 444444444433222211110 111111
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHhhhccccchhhhhccccchHHHHHHHHHHHHHHHHHHHh
Q 024800 87 VKDY-RSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIAL 165 (262)
Q Consensus 87 i~~y-r~ki~~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~e~A~~aY~~A~~~a~ 165 (262)
..-| ...--++-...+..+++. |.. ...... +.. .|..|. ..++ .+.|.+.|++++..
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~------~~~-~~~~~~-~~~-l~~~~~-----~~g~-----~~~A~~~~~~~~~~-- 164 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIED------PLY-PQPARS-LEN-AGLCAL-----KAGD-----FDKAEKYLTRALQI-- 164 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc------ccc-ccchHH-HHH-HHHHHH-----HcCC-----HHHHHHHHHHHHHh--
Confidence 1111 111112233344444321 110 011111 111 233221 1111 35578888887753
Q ss_pred hcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHH
Q 024800 166 TDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEE 206 (262)
Q Consensus 166 ~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 206 (262)
.|.+| ....+.+..++. .|+.++|+...+++.+.
T Consensus 165 ---~~~~~---~~~~~la~~~~~-~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 165 ---DPQRP---ESLLELAELYYL-RGQYKDARAYLERYQQT 198 (234)
T ss_pred ---CcCCh---HHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 33343 334456666665 79999999887776553
No 30
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=52.99 E-value=48 Score=35.60 Aligned_cols=84 Identities=14% Similarity=-0.024 Sum_probs=53.2
Q ss_pred CCCCCCchhhhHhhhccccchhh-hhccccc--hHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhC
Q 024800 115 PSATAGESKVFYLKMKGDYYRYL-AEFKVGD--ERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILN 191 (262)
Q Consensus 115 p~~~~~eskVfy~KmkgDyyRYl-aE~~~~~--~~~~~~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~ 191 (262)
|.........||++..|||+.-. |-+.-+. ++-.-.++|..+|+++++ +.|.||. +||+=-|+|.-.
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~-----~D~~n~~----aLNn~AY~~ae~- 163 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK-----ADRDNPE----IVKKLATSYEEE- 163 (906)
T ss_pred ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCcccHH----HHHHHHHHHHHh-
Confidence 33333455668888888876433 2222111 111235668888988875 4478874 666655555555
Q ss_pred CHHHHHHHHHHHHHHHH
Q 024800 192 SSEKACTMAKQAFEEAI 208 (262)
Q Consensus 192 ~~~~A~~iAk~afd~Ai 208 (262)
+.++|.+++++|+.--+
T Consensus 164 dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 164 DKEKAITYLKKAIYRFI 180 (906)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999999999987644
No 31
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=51.96 E-value=29 Score=21.17 Aligned_cols=26 Identities=15% Similarity=0.401 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 024800 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (262)
Q Consensus 9 l~~~Aklaeq~eRy~Dm~~~mk~~i~ 34 (262)
+..+|.+..+.|.|+.++++.++.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45789999999999999999998553
No 32
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=51.53 E-value=67 Score=29.48 Aligned_cols=71 Identities=25% Similarity=0.317 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024800 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (262)
Q Consensus 40 ~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieq~e~~~~~~~~~~~i~~yr~ki~~EL~~~C~eii~lId~~L 113 (262)
|+.|.|-|.=|+...+......|.|+|-+..=.-+...+... ..-.+--.+++.||..+.++.++.+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~---~~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK---SLSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 558899999999999999999999999886432222211111 02245556788888888888888887764
No 33
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=51.26 E-value=72 Score=21.44 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHH
Q 024800 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQA 203 (262)
Q Consensus 151 e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~a 203 (262)
+.|.+.|++++.. +|-...+.++++..|+. .|+.++|..+.+++
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 4577777777653 34455556667777777 59999988876653
No 34
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=51.09 E-value=52 Score=28.69 Aligned_cols=88 Identities=27% Similarity=0.335 Sum_probs=49.9
Q ss_pred cccchhhhhccccchHHHHHHHHHHHHHHHHHHHhhcCCCCCc---hhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 024800 131 GDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHP---IRLGLALNFSVFYYEILNSSEKACTMAKQAFEEA 207 (262)
Q Consensus 131 gDyyRYlaE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt~P---irLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~A 207 (262)
|...==++-|..+.+.+++.+.|..-|++|+.+- |..+ .-||.|+--=-|+..-..+.+.=.+.|...|+.|
T Consensus 32 G~ALLELAqfk~g~es~~miedAisK~eeAL~I~-----P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkA 106 (186)
T PF06552_consen 32 GGALLELAQFKQGPESKKMIEDAISKFEEALKIN-----PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 3333345667788888889999999999998753 2222 3456555544443332223333355677778888
Q ss_pred HHhhcccCCCchHhHHHH
Q 024800 208 IAELDTLGEESYKDSTLI 225 (262)
Q Consensus 208 i~~ld~l~ee~~~ds~~I 225 (262)
... .-+.+.|+-+..+
T Consensus 107 v~~--~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 107 VDE--DPNNELYRKSLEM 122 (186)
T ss_dssp HHH---TT-HHHHHHHHH
T ss_pred Hhc--CCCcHHHHHHHHH
Confidence 774 2334567665443
No 35
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=50.64 E-value=61 Score=28.28 Aligned_cols=73 Identities=25% Similarity=0.235 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024800 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (262)
Q Consensus 40 ~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieq~e~~~~~~~~~~~i~~yr~ki~~EL~~~C~eii~lId~~L 113 (262)
|+||.|-|.=|..-.|...-.-|-|.|.+.-=... ..++...--..-++-.++.++++..+.++.+.-||..+
T Consensus 105 P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d-~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 105 PPLTEERRKELVKVAKKYAEEAKVAVRNIRRDAND-KIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999988521111 11111111112355666777888888888888887654
No 36
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=49.97 E-value=37 Score=19.86 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 024800 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (262)
Q Consensus 9 l~~~Aklaeq~eRy~Dm~~~mk~~i~ 34 (262)
+..++.+..+.|+|++++.+.++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 45678888999999999999999987
No 37
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=48.83 E-value=66 Score=26.22 Aligned_cols=50 Identities=18% Similarity=0.076 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 024800 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFE 205 (262)
Q Consensus 150 ~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 205 (262)
.+.|...|++|+.+. |.++.......|.++.+.. .|+.++|+...++|+.
T Consensus 51 ~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 51 YAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 356888899998763 2333333355666665554 7999999998888774
No 38
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=45.76 E-value=3.2e+02 Score=27.27 Aligned_cols=44 Identities=20% Similarity=0.213 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 024800 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAY 54 (262)
Q Consensus 7 e~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ay 54 (262)
+-...++.+..+.|+|++++...+++++ .. +-+..-...+..+|
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~--~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLA--LQ--PDSALALLLLADAY 645 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC--CCChHHHHHHHHHH
Confidence 3445566666666777777777776665 32 22334444454444
No 39
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=45.38 E-value=34 Score=32.29 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=39.1
Q ss_pred hCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHHHHHHHHHhhHhhhhc
Q 024800 190 LNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTS 238 (262)
Q Consensus 190 ~~~~~~A~~iAk~afd~Ai~~ld~l~ee~~~ds~~IlqLLrdNl~~W~~ 238 (262)
.|.+.+|+++.+.++ .+|.|+|++++.-+.++-.++||+..=.+
T Consensus 292 ~g~~neAi~l~qr~l-----tldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 292 AGKPNEAIQLHQRAL-----TLDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred cCChHHHHHHHHHHh-----hcChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 699999999999875 37889999999999999999999987554
No 40
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=45.04 E-value=30 Score=27.97 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=36.3
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHHHHHHHHHhhHhhhhc
Q 024800 186 YYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTS 238 (262)
Q Consensus 186 ~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~~~ds~~IlqLLrdNl~~W~~ 238 (262)
|-++......+.++=.++|..+...|....+..-.+....++-|..|-.+|+-
T Consensus 8 Y~~~~~~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~ 60 (122)
T PRK12794 8 YARAAQPTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSI 60 (122)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 34455555556666677788888777766554333336777999999999984
No 41
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=44.21 E-value=88 Score=26.82 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024800 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (262)
Q Consensus 40 ~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieq~e~~~~~~~~~~~i~~yr~ki~~EL~~~C~eii~lId~~L 113 (262)
|+||.|-|.=|....|...-..|.++|-+..--.+.- ++.......-++-.+++++++..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKV-KKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999988853111110 000000011144555666666666666666666543
No 42
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=44.15 E-value=45 Score=27.81 Aligned_cols=62 Identities=26% Similarity=0.227 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCchhHhHhhhH-HHHH-HHH--hCCHHHHHHHHHHHHHHHHHhhcc
Q 024800 152 NTMLSYKAAQDIALTDLAPTHPIRLGLALNF-SVFY-YEI--LNSSEKACTMAKQAFEEAIAELDT 213 (262)
Q Consensus 152 ~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~-SVF~-yEi--~~~~~~A~~iAk~afd~Ai~~ld~ 213 (262)
....+|-+++.-....++...|+.++..|.+ .||. .+- ....+..-.....++++|++.+..
T Consensus 82 ~l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l~~ 147 (159)
T PF03755_consen 82 ELAKAYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDELIA 147 (159)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677776666667888889999999999 5665 331 112233457789999999988664
No 43
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=44.14 E-value=77 Score=27.16 Aligned_cols=72 Identities=24% Similarity=0.251 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 024800 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSH 112 (262)
Q Consensus 40 ~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieq~e~~~~~~~~~~~i~~yr~ki~~EL~~~C~eii~lId~~ 112 (262)
|++|.|-|.=|....|...-..|.+.|.+..--.+.- ++....-..-++-.++.++++..+-++.+.-||..
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~l-Kk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~ 170 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKI-KKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDEL 170 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999989999888853111110 00000000123444456666666666666666654
No 44
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=43.45 E-value=91 Score=26.95 Aligned_cols=72 Identities=22% Similarity=0.229 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 024800 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSH 112 (262)
Q Consensus 40 ~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieq~e~~~~~~~~~~~i~~yr~ki~~EL~~~C~eii~lId~~ 112 (262)
|+||.|-|.=|....|...-.-|.+.|.+..--.+.- ++....-..-++-.++.++|+..+.++.+.-||..
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~ 174 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKL-KKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDEL 174 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999888999988853211110 00000001113444566666666666666666654
No 45
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=41.78 E-value=1.1e+02 Score=22.31 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHH
Q 024800 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEE 206 (262)
Q Consensus 151 e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 206 (262)
+.|.+.|+.+.. +.|.+|......++.+..++. +|+.++|.....++++.
T Consensus 56 ~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 56 ADAAKAFLAVVK-----KYPKSPKAPDALLKLGMSLQE-LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHH-----HCCCCCcccHHHHHHHHHHHH-hCChHHHHHHHHHHHHH
Confidence 457777777764 346766555555566555554 79999999877766654
No 46
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=39.96 E-value=50 Score=23.65 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHH
Q 024800 156 SYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ 202 (262)
Q Consensus 156 aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~ 202 (262)
-|++|+++.+. .+.+|..+....-++--+++ +|+.++|+..-++
T Consensus 40 ~y~~A~~~~~~--~~~~~~~~~~~~l~a~~~~~-l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 40 KYEEAIELLQK--LKLDPSNPDIHYLLARCLLK-LGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHC--HTHHHCHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHH--hCCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHhc
Confidence 34455555432 33333333333333333333 6777777765443
No 47
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.80 E-value=1.9e+02 Score=24.63 Aligned_cols=34 Identities=12% Similarity=0.274 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhh
Q 024800 24 EMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGS 60 (262)
Q Consensus 24 Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~ 60 (262)
..++..+++++ .. .+||.+|++.|..+...++-.
T Consensus 83 ~~L~aa~el~e--e~-eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 83 NALEAANELIE--ED-EELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHHH--Hh-hcCCHHHHHHHHhhhHHHhhc
Confidence 45677788887 44 899999999999999988753
No 48
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=39.31 E-value=1.2e+02 Score=24.84 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 024800 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFE 205 (262)
Q Consensus 151 e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 205 (262)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+...++|++
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 467889998887642 222223345666666665 7999999998887766
No 49
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=38.66 E-value=39 Score=27.13 Aligned_cols=52 Identities=27% Similarity=0.346 Sum_probs=41.4
Q ss_pred HHHHhCCHH-HHHHHHHHHHHHHHHhhcccCCCchHhHHHHHHHHHhhHhhhhc
Q 024800 186 YYEILNSSE-KACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTS 238 (262)
Q Consensus 186 ~yEi~~~~~-~A~~iAk~afd~Ai~~ld~l~ee~~~ds~~IlqLLrdNl~~W~~ 238 (262)
|-+++.+.. .+.++=.++|..+...|....+..- ++...++-|.+|-.+|+-
T Consensus 6 Ya~~~~~s~~~~R~~E~~~l~r~~~~L~~a~~~~~-~~~~~~eAL~~NrrLWt~ 58 (115)
T PRK12793 6 YAEVMEDSVASARERERQAFDRSIDLLEAARAKGA-YSREAIEALYFTRRLWTV 58 (115)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Confidence 566777666 7778888899999988887666544 677888999999999984
No 50
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=37.73 E-value=1.7e+02 Score=23.39 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHH
Q 024800 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEE 206 (262)
Q Consensus 151 e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 206 (262)
++|...|++|+.. .|+ .|.|-+..++.+--+- .+|++++|+.+-+++..+
T Consensus 18 ~~Ai~~Y~~Al~~---gL~--~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 18 EEAIPLYRRALAA---GLS--GADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHc---CCC--chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 5689999999752 344 4555556666655544 589999999998887653
No 51
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=36.05 E-value=2.8e+02 Score=25.65 Aligned_cols=98 Identities=14% Similarity=0.172 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHhhc----------CCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCch
Q 024800 150 AENTMLSYKAAQDIALTD----------LAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESY 219 (262)
Q Consensus 150 ~e~A~~aY~~A~~~a~~~----------L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~~ 219 (262)
+....+.|.+++...... .+.+.-..|-+.+++++|..+ .|..+.|+.+.|..++-..-.-+.+.....
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~ 196 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFNFFRPESLSSSSF 196 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHcCCccccccccH
Confidence 445667777776655432 233456888999999999998 699999999999888776643333333222
Q ss_pred HhHHHHHHHHHhhHhhhhcccCcCccch-hhHhhhh
Q 024800 220 KDSTLIMQLLRDNLTLWTSDMQVSAIFS-SGVFIYL 254 (262)
Q Consensus 220 ~ds~~IlqLLrdNl~~W~~e~~~~~~~~-~~~~~~~ 254 (262)
. +.++.=-.=|.++.+.-|--. .|.-+++
T Consensus 197 ~------~~~~~fe~FWeS~vpRiGE~gA~GW~~~~ 226 (321)
T PF08424_consen 197 S------ERLESFEEFWESEVPRIGEPGAKGWRKWM 226 (321)
T ss_pred H------HHHHHHHHHhCcCCCCCCCCCcchhhhhh
Confidence 1 333444478999777666555 6766654
No 52
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=34.07 E-value=1.4e+02 Score=19.82 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHH
Q 024800 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRII 68 (262)
Q Consensus 11 ~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l 68 (262)
-+|...-+.|+|++++..+++++. .. +-+.+=+..+..++- ..+....|...+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--~~--P~~~~a~~~lg~~~~-~~g~~~~A~~~~ 54 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--QD--PDNPEAWYLLGRILY-QQGRYDEALAYY 54 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--CS--TTHHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--HC--CCCHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 467888899999999999999997 43 335555556665554 334444444444
No 53
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=33.40 E-value=75 Score=16.37 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 024800 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (262)
Q Consensus 9 l~~~Aklaeq~eRy~Dm~~~mk~~i~ 34 (262)
+..++.+..+.++|++++..+.+.+.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 45678888889999999999998876
No 54
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=33.10 E-value=3.8e+02 Score=24.41 Aligned_cols=24 Identities=13% Similarity=0.306 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHh
Q 024800 10 VYLAKLAEQAERYEEMVKFMDSLV 33 (262)
Q Consensus 10 ~~~Aklaeq~eRy~Dm~~~mk~~i 33 (262)
..++.+.-+.|+|++++.....++
T Consensus 73 ~~la~~~~~~g~~~~A~~~~~~~l 96 (389)
T PRK11788 73 LALGNLFRRRGEVDRAIRIHQNLL 96 (389)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHh
Confidence 334444445555555555555444
No 55
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=32.45 E-value=62 Score=21.75 Aligned_cols=53 Identities=17% Similarity=0.386 Sum_probs=33.5
Q ss_pred HhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhh
Q 024800 18 QAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKE 75 (262)
Q Consensus 18 q~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieq~e 75 (262)
+.|+|++++..+++++. .. |. +.+=+-.+..+|-.. |..-.|.+++..+....
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~-p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RN-PD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HT-TT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHH--HC-CC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 45777788888877776 32 33 666666666666554 66667777776655554
No 56
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=32.27 E-value=1.6e+02 Score=19.77 Aligned_cols=45 Identities=22% Similarity=0.379 Sum_probs=31.7
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh
Q 024800 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYK 55 (262)
Q Consensus 7 e~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayK 55 (262)
+.+..+|.++-+.|+|++++.+.++.++ .+ |. +.+=..-++.+|.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~-p~-~~~~~~~~g~~~~ 48 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIE--LD-PN-NAEAYYNLGLAYM 48 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHH--HS-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cC-CC-CHHHHHHHHHHHH
Confidence 4566789999999999999999999998 43 33 3333334444443
No 57
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=31.98 E-value=1e+02 Score=31.72 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=61.9
Q ss_pred hccccchhhhhccccchHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 024800 129 MKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAI 208 (262)
Q Consensus 129 mkgDyyRYlaE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai 208 (262)
+-++.||=+....----|++--+.|+-.|++|++ +||.-.-+.-=...++.. +|..++|+++-++|+-
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--------INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~~A~~--- 551 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--------INPSNSVILCHIGRIQHQ-LKRKDKALQLYEKAIH--- 551 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--------CCccchhHHhhhhHHHHH-hhhhhHHHHHHHHHHh---
Confidence 4455555554433333344445556666666654 456666666666777665 7999999999888753
Q ss_pred HhhcccCC-CchHhHHHHHHHHHhhHhhhhcccCcCccchhhHhhhhhhhhhcc
Q 024800 209 AELDTLGE-ESYKDSTLIMQLLRDNLTLWTSDMQVSAIFSSGVFIYLVLQVHMQ 261 (262)
Q Consensus 209 ~~ld~l~e-e~~~ds~~IlqLLrdNl~~W~~e~~~~~~~~~~~~~~~~~~~~~~ 261 (262)
+|..+- --|+-+..+.-+=|++-.+=.-|.-+.-|-.-.+-|||.-++|.+
T Consensus 552 --ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~ 603 (638)
T KOG1126|consen 552 --LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKR 603 (638)
T ss_pred --cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 121111 113333333333333333222232333344445566777777643
No 58
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=31.15 E-value=1.2e+02 Score=28.50 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=19.8
Q ss_pred HHHHHHHHHhh--cCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHH
Q 024800 156 SYKAAQDIALT--DLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQA 203 (262)
Q Consensus 156 aY~~A~~~a~~--~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~a 203 (262)
-|++|+..++. .+.|.+| ...++.++.++. +|+.+.|+...++|
T Consensus 51 ~~~eAl~~~~~Al~l~P~~~---~a~~~lg~~~~~-lg~~~eA~~~~~~a 96 (356)
T PLN03088 51 NFTEAVADANKAIELDPSLA---KAYLRKGTACMK-LEEYQTAKAALEKG 96 (356)
T ss_pred CHHHHHHHHHHHHHhCcCCH---HHHHHHHHHHHH-hCCHHHHHHHHHHH
Confidence 34444444432 2444443 223344444443 56666666644443
No 59
>PRK15331 chaperone protein SicA; Provisional
Probab=31.15 E-value=2.4e+02 Score=24.08 Aligned_cols=73 Identities=14% Similarity=0.075 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHHHHHH
Q 024800 148 AAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQ 227 (262)
Q Consensus 148 ~~~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~~~ds~~Ilq 227 (262)
+--++|.++|-.|.-+... .|.-|.+.|. .|=.+|++.+|.. +|.-|+..-. ..+-..-+...+.
T Consensus 85 k~y~~Ai~~Y~~A~~l~~~--dp~p~f~agq-------C~l~l~~~~~A~~----~f~~a~~~~~--~~~l~~~A~~~L~ 149 (165)
T PRK15331 85 KQFQKACDLYAVAFTLLKN--DYRPVFFTGQ-------CQLLMRKAAKARQ----CFELVNERTE--DESLRAKALVYLE 149 (165)
T ss_pred HHHHHHHHHHHHHHHcccC--CCCccchHHH-------HHHHhCCHHHHHH----HHHHHHhCcc--hHHHHHHHHHHHH
Confidence 3345666677666655432 2333444442 3445799988776 8888877311 1122333677777
Q ss_pred HHHhhHhh
Q 024800 228 LLRDNLTL 235 (262)
Q Consensus 228 LLrdNl~~ 235 (262)
.|.+|.+.
T Consensus 150 ~l~~~~~~ 157 (165)
T PRK15331 150 ALKTAETE 157 (165)
T ss_pred HHHccccc
Confidence 77766543
No 60
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=30.46 E-value=7.6e+02 Score=27.10 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 024800 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (262)
Q Consensus 8 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~ 34 (262)
..+.+|++.-..|+|++++..++++++
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 357788999999999999999999986
No 61
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=29.97 E-value=86 Score=20.69 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 024800 10 VYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLS 51 (262)
Q Consensus 10 ~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls 51 (262)
+-+|+..-..|.++.+.+.+.+++. .++++.-.+=+.||.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~--~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE--EGDEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH--cCCHHHHHHHHHHHh
Confidence 4689999999999999999999996 443444555566654
No 62
>COG4499 Predicted membrane protein [Function unknown]
Probab=29.95 E-value=1.1e+02 Score=29.90 Aligned_cols=48 Identities=27% Similarity=0.385 Sum_probs=40.0
Q ss_pred hHhHhhhHHHHHHHHhCCHHHHHHHHHHHH-----HHHHHhhcccCCCchHhH
Q 024800 175 RLGLALNFSVFYYEILNSSEKACTMAKQAF-----EEAIAELDTLGEESYKDS 222 (262)
Q Consensus 175 rLgLaLN~SVF~yEi~~~~~~A~~iAk~af-----d~Ai~~ld~l~ee~~~ds 222 (262)
-|-+++=|.+|+|-+....+.||.-|.+|| ++.+..++.+|.++.+.+
T Consensus 230 llvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klPks 282 (434)
T COG4499 230 LLVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLPKS 282 (434)
T ss_pred HHHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCcHH
Confidence 344678999999999999999999999985 789999998887765443
No 63
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=28.26 E-value=1.1e+02 Score=21.86 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=9.9
Q ss_pred HHHHHHHHhcCHHHHHHHHH
Q 024800 11 YLAKLAEQAERYEEMVKFMD 30 (262)
Q Consensus 11 ~~Aklaeq~eRy~Dm~~~mk 30 (262)
.+|+...+.|+|+++++.++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHh
Confidence 33555555555555555544
No 64
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=27.59 E-value=1.6e+02 Score=27.60 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHH
Q 024800 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQA 203 (262)
Q Consensus 151 e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~a 203 (262)
+.|.+.|.+|+ .|.|+|||+.. |-|-=|- -+|..+.|++-|+.|
T Consensus 98 ~eAv~kY~~AI-----~l~P~nAVyyc---NRAAAy~-~Lg~~~~AVkDce~A 141 (304)
T KOG0553|consen 98 QEAVDKYTEAI-----ELDPTNAVYYC---NRAAAYS-KLGEYEDAVKDCESA 141 (304)
T ss_pred HHHHHHHHHHH-----hcCCCcchHHH---HHHHHHH-HhcchHHHHHHHHHH
Confidence 34666777776 37788877543 2222221 245555555555544
No 65
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=26.86 E-value=59 Score=28.23 Aligned_cols=75 Identities=24% Similarity=0.337 Sum_probs=45.5
Q ss_pred cCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHhHHHHHHHHHhhHhhhhcccCcCccc
Q 024800 167 DLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQVSAIF 246 (262)
Q Consensus 167 ~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~~~ds~~IlqLLrdNl~~W~~e~~~~~~~ 246 (262)
-|-.-+|...|-+|||-=.-.=+++.. ++=-.|.|..+.....++||++|-|.--.. .--+
T Consensus 67 YlIDRDP~~FgpvLNylRhgklvl~~l---------------~eeGvL~EAefyn~~~li~likd~i~dRd~----~~tq 127 (210)
T KOG2715|consen 67 YLIDRDPFYFGPVLNYLRHGKLVLNKL---------------SEEGVLEEAEFYNDPSLIQLIKDRIQDRDA----MVTQ 127 (210)
T ss_pred eEeccCcchHHHHHHHHhcchhhhhhh---------------hhhccchhhhccCChHHHHHHHHHHHHHhh----hccc
Confidence 355678999999999965433343322 222234444444456677888887753221 1122
Q ss_pred hhhHhhhhhhhhhc
Q 024800 247 SSGVFIYLVLQVHM 260 (262)
Q Consensus 247 ~~~~~~~~~~~~~~ 260 (262)
..-+|.|=|||-|-
T Consensus 128 ~~~k~vyrvLqcqe 141 (210)
T KOG2715|consen 128 EADKFVYRVLQCQE 141 (210)
T ss_pred cchhHHHHHHHHHH
Confidence 36789999999874
No 66
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=26.72 E-value=1.7e+02 Score=25.01 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCC--HHHHHHHHHHHHH
Q 024800 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNS--SEKACTMAKQAFE 205 (262)
Q Consensus 151 e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~--~~~A~~iAk~afd 205 (262)
+.|..+|++|+.+ .|.+| .+.++++.-+|...|+ .++|.++..+|..
T Consensus 90 ~~A~~a~~~Al~l-----~P~~~---~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~ 138 (198)
T PRK10370 90 DNALLAYRQALQL-----RGENA---ELYAALATVLYYQAGQHMTPQTREMIDKALA 138 (198)
T ss_pred HHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 4577788777653 33333 3345555544444555 4666666666544
No 67
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=26.48 E-value=1.3e+02 Score=20.49 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=31.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Q 024800 13 AKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQ 73 (262)
Q Consensus 13 Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieq 73 (262)
+.++-+.++|+.+++++..++. .+ |+ +..-+.....+|- ..+..-.|.+.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~--~~-p~-~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE--LD-PD-DPELWLQRARCLF-QLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--hC-cc-cchhhHHHHHHHH-HhccHHHHHHHHHHHHH
Confidence 4566677888888888888876 43 43 4444444444433 23444555555554333
No 68
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=26.11 E-value=3.5e+02 Score=26.10 Aligned_cols=78 Identities=22% Similarity=0.347 Sum_probs=50.3
Q ss_pred ccccchhhhhccc---cchH----HHHHHHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHH
Q 024800 130 KGDYYRYLAEFKV---GDER----KAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ 202 (262)
Q Consensus 130 kgDyyRYlaE~~~---~~~~----~~~~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~ 202 (262)
-++||-|+||-.. +.+. .+.-+.=.+-..++.+-|++++..+ -+| ...+|-+-||-.| ||++.|.+..+.
T Consensus 53 Map~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~-ev~-ea~~~kaeYycqi-gDkena~~~~~~ 129 (393)
T KOG0687|consen 53 MAPLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGES-EVR-EAMLRKAEYYCQI-GDKENALEALRK 129 (393)
T ss_pred cchHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchH-HHH-HHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 4678888888332 1111 1222223344556666676665544 233 3467778887776 999999999999
Q ss_pred HHHHHHHh
Q 024800 203 AFEEAIAE 210 (262)
Q Consensus 203 afd~Ai~~ 210 (262)
+++++++-
T Consensus 130 t~~ktvs~ 137 (393)
T KOG0687|consen 130 TYEKTVSL 137 (393)
T ss_pred HHHHHhhc
Confidence 99999873
No 69
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=25.69 E-value=56 Score=28.60 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHH
Q 024800 149 AAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEE 206 (262)
Q Consensus 149 ~~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 206 (262)
.-+.|.++|++|..- .-+| -.++...+|+.|||..||.
T Consensus 14 ~Ye~A~~~Ye~av~n---g~~~-----------------q~~Kql~KA~NIAKse~dr 51 (199)
T PF08717_consen 14 AYETARQAYEEAVAN---GSSP-----------------QELKQLKKAMNIAKSEFDR 51 (199)
T ss_dssp HHHHHHHHHHHHHHC---T--H-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc---CCCH-----------------HHHHHHHHHHhHHHHHHhH
Confidence 457799999999762 1121 1357788999999999984
No 70
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=25.42 E-value=4.6e+02 Score=22.93 Aligned_cols=60 Identities=23% Similarity=0.241 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHH---HHHHHHh
Q 024800 149 AAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQA---FEEAIAE 210 (262)
Q Consensus 149 ~~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~a---fd~Ai~~ 210 (262)
..+.|.++|.-|+-.+. +...+|...|...=-...+|.-+|+.+.....-++| |.+|...
T Consensus 92 t~~~ai~~YkLAll~~~--~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~ 154 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQ--IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN 154 (214)
T ss_pred CHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 46779999999998874 444555555544444457777789877666665555 5555554
No 71
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=24.10 E-value=1.7e+02 Score=31.82 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhh--cCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 024800 155 LSYKAAQDIALT--DLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAE 210 (262)
Q Consensus 155 ~aY~~A~~~a~~--~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ 210 (262)
++|+.|+.+-.. ...|.||.-|...-|+=+| .||.+.++.+|-.|+..+...
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhh
No 72
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=23.58 E-value=4e+02 Score=21.63 Aligned_cols=13 Identities=15% Similarity=0.429 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q 024800 151 ENTMLSYKAAQDI 163 (262)
Q Consensus 151 e~A~~aY~~A~~~ 163 (262)
+.|..+|++|+.+
T Consensus 89 ~~A~~~~~~al~~ 101 (172)
T PRK02603 89 DKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHh
Confidence 5678888888864
No 73
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=23.56 E-value=1.6e+02 Score=22.26 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHh----HhhhHHHHHH
Q 024800 150 AENTMLSYKAAQDIALTDLAPTHPIRLG----LALNFSVFYY 187 (262)
Q Consensus 150 ~e~A~~aY~~A~~~a~~~L~pt~PirLg----LaLN~SVF~y 187 (262)
+....+.-+.|++-- +..|.||..|+ +.-+|++|+-
T Consensus 20 a~~~~~~l~~Al~~l--~~~pdnP~~LA~~Qa~l~eyn~~RN 59 (80)
T PRK15326 20 VDNLQTQVTEALDKL--AAKPSDPALLAAYQSKLSEYNLYRN 59 (80)
T ss_pred HHHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 444555556665433 58999999998 5667777653
No 74
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.55 E-value=2.7e+02 Score=29.25 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhH-hHhhhHHHHHHHHhC
Q 024800 150 AENTMLSYKAAQDIALTDLAPTHPIRL-GLALNFSVFYYEILN 191 (262)
Q Consensus 150 ~e~A~~aY~~A~~~a~~~L~pt~PirL-gLaLN~SVF~yEi~~ 191 (262)
-++..+|+++|+.+|.+.+.|+-++-| -=+||--.|+||--+
T Consensus 656 GkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfyek~n 698 (760)
T KOG1107|consen 656 GKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFYEKGN 698 (760)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhcCC
Confidence 456799999999999999999988777 458899899998533
No 75
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=23.52 E-value=5.4e+02 Score=23.01 Aligned_cols=28 Identities=25% Similarity=0.441 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 024800 7 EQYVYLAKLAEQAERYEEMVKFMDSLVT 34 (262)
Q Consensus 7 e~l~~~Aklaeq~eRy~Dm~~~mk~~i~ 34 (262)
+-.+..|++|-.+|+|+-+..++..+..
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~ 174 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQ 174 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhc
Confidence 4567899999999999999999988775
No 76
>PRK11820 hypothetical protein; Provisional
Probab=23.18 E-value=1.5e+02 Score=27.42 Aligned_cols=60 Identities=20% Similarity=0.182 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhcCCCCCchhHhHhhhHH-HHHHHHhCCHHHHHHHHHHHHHHHHHhhccc
Q 024800 154 MLSYKAAQDIALTDLAPTHPIRLGLALNFS-VFYYEILNSSEKACTMAKQAFEEAIAELDTL 214 (262)
Q Consensus 154 ~~aY~~A~~~a~~~L~pt~PirLgLaLN~S-VF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l 214 (262)
.++|-+++.-....++...|+.|.-.|.+. |+. +-..+.+..-.....|+++|++.+...
T Consensus 85 ~~~y~~~l~~l~~~~~~~~~~~l~~ll~~p~v~~-~~~~~~~~~~~~l~~al~~AL~~l~~~ 145 (288)
T PRK11820 85 AKQYLEALEELKAELPEAGEISLDDLLRWPGVLE-AEEEDLEALWAALLAALDEALDDLIEM 145 (288)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHhCCCCccc-CCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666664444466544599999888874 432 223466666678899999999887653
No 77
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=23.12 E-value=6.2e+02 Score=23.64 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHhhhccc-cchhhhhccccchHHH-HHHHHHHHHHHH
Q 024800 83 HVSLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGD-YYRYLAEFKVGDERKA-AAENTMLSYKAA 160 (262)
Q Consensus 83 ~~~~i~~yr~ki~~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgD-yyRYlaE~~~~~~~~~-~~e~A~~aY~~A 160 (262)
.+..|+.-|.+++++|..--++|...|=..+-....-.+..+|--.+ +. |=.+...+...-.++. +...-..++.+-
T Consensus 199 ~l~~lk~eR~~~~~~Lk~~~dDI~~~ll~~~~~~~~~~~e~l~~~eL-~k~f~~~~~~i~~~~~~Q~~ll~~i~~~n~~f 277 (339)
T cd09235 199 QVETIKAEREVIESELKSATFDMKSKFLSALAQDGAINEEAISVEEL-DRVYGPLQKQVQESLSRQESLLANIQVAHQEF 277 (339)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhcCCccHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888887665555544433221111112234444444 22 3333333333322222 222222222222
Q ss_pred HHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCC--CchHhHHHHHHHHHhhHhhhhc
Q 024800 161 QDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGE--ESYKDSTLIMQLLRDNLTLWTS 238 (262)
Q Consensus 161 ~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~e--e~~~ds~~IlqLLrdNl~~W~~ 238 (262)
.. .+.. . ..-+..+.+++--..||+.-..-...+.+ ..|.|-+.++.-++.++.-|..
T Consensus 278 ~~-~~~~-~------------------~~~~~re~~lq~L~~Ay~~y~el~~nl~eG~kFY~dL~~~~~~~~~~~~~fv~ 337 (339)
T cd09235 278 SK-EKQS-N------------------SGANEREEVLKDLAAAYDAFMELTANLKEGTKFYNDLTEILVKFQNKCSDFVF 337 (339)
T ss_pred HH-Hhcc-c------------------chhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 1110 0 01234556677666776655444445554 5799999999999999998864
No 78
>PF07309 FlaF: Flagellar protein FlaF; InterPro: IPR010845 This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis [].
Probab=23.09 E-value=93 Score=24.72 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHHHHhhcccCCCchHhHHHHHHHHHhhHhhhhc
Q 024800 192 SSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTS 238 (262)
Q Consensus 192 ~~~~A~~iAk~afd~Ai~~ld~l~ee~~~ds~~IlqLLrdNl~~W~~ 238 (262)
.+..+.++=..+|..+...|....+..-.+...+ +-|.+|..+|+.
T Consensus 12 ~~~~~Re~E~~~l~~a~~~L~~A~~~~~~~~~~~-~AL~~N~rLW~~ 57 (113)
T PF07309_consen 12 STRSPREIEARALARAARRLERAREAGPRSREAL-EALHFNRRLWTI 57 (113)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHHHHH
Confidence 3344455555677777777665553222222223 999999999985
No 79
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=22.40 E-value=4.2e+02 Score=23.57 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhhhhhh-----hhHHHHHHH
Q 024800 45 EERNLLSVAYKNVIGSL-----RAAWRIISS 70 (262)
Q Consensus 45 eERnLls~ayKn~i~~~-----R~s~R~l~~ 70 (262)
|+...+-+-..++|+.+ |.|+++|..
T Consensus 109 edi~tifvnlHHLiNeyRPhQaResLi~lmE 139 (223)
T KOG0570|consen 109 EDIRTIFVNLHHLINEYRPHQARESLIMLME 139 (223)
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34456667788899876 577888753
No 80
>PF11568 Med29: Mediator complex subunit 29; InterPro: IPR021018 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med29, along with Med11 and Med28, in mammals, is part of the core head-region of the complex. Med29 is the apparent orthologue of the Drosophila melanogaster Intersex protein, which interacts directly with, and functions as a transcriptional coactivator for, the DNA-binding transcription factor Doublesex, so it is likely that mammalian Med29 serves as a target for one or more DNA-binding transcriptional activators []. ; GO: 0016592 mediator complex
Probab=21.80 E-value=2.4e+02 Score=23.73 Aligned_cols=49 Identities=22% Similarity=0.523 Sum_probs=28.8
Q ss_pred HhhhhhhhhhHHHHHHH-----Hhhh------hhcccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 024800 54 YKNVIGSLRAAWRIISS-----IEQK------EEGRKNEEHVSLVKDYRSKVESELSDVCGSIL 106 (262)
Q Consensus 54 yKn~i~~~R~s~R~l~~-----ieq~------e~~~~~~~~~~~i~~yr~ki~~EL~~~C~eii 106 (262)
+|++|++.|.||..+.. +.++ ...++.+.. ..+|.+.+ +|...+|+.|-
T Consensus 10 vK~Lv~~LreSl~~~~k~AA~~l~qn~~~D~g~~~~~~d~~---~~RFdK~l-EeFysiCDQIE 69 (148)
T PF11568_consen 10 VKSLVGPLRESLSNLMKTAAQNLQQNSLVDNGTRGKSSDEP---VPRFDKNL-EEFYSICDQIE 69 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCc---HHHHHHHH-HHHHHHHHHHH
Confidence 68888888888887642 3344 111222222 23455554 67888898764
No 81
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=21.66 E-value=1.1e+02 Score=19.56 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=26.4
Q ss_pred ccchhhhhccccchHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 024800 132 DYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPT 171 (262)
Q Consensus 132 DyyRYlaE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt 171 (262)
|.|--++|+.-..++ -++|.+=|++|+++-++.+||.
T Consensus 2 dv~~~Lgeisle~e~---f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENEN---FEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhcCCC
Confidence 445556776665554 3568888999999988878774
No 82
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=21.37 E-value=1.1e+03 Score=25.86 Aligned_cols=56 Identities=11% Similarity=-0.076 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 024800 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSI 71 (262)
Q Consensus 11 ~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~i 71 (262)
.++.++-..|++++++...++++. .. |. +..=...|..+|.. .+....|.+.+...
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~--~~-P~-~~~a~~~Lg~~~~~-~g~~~eA~~~y~~a 411 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQ--VD-NT-DSYAVLGLGDVAMA-RKDYAAAERYYQQA 411 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hC-CC-CHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 345666678999999999999997 43 43 22334445555532 35555666665543
No 83
>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.26 E-value=3.4e+02 Score=19.86 Aligned_cols=50 Identities=14% Similarity=0.322 Sum_probs=29.4
Q ss_pred CCCCcHHhHHHHHH-------HHHHh---------cCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 024800 1 MGTPTREQYVYLAK-------LAEQA---------ERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAY 54 (262)
Q Consensus 1 ~~~~~re~l~~~Ak-------laeq~---------eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ay 54 (262)
|.+.++|.+.||.- +..+. .+|+| ...+.+++. .. ..||+-|-..+....
T Consensus 1 m~~~n~Enl~fmi~eI~~KLnmvN~gvl~~e~~d~~~~ed-Ltdiy~mvk--kk-enfSpsEmqaiA~eL 66 (71)
T COG4840 1 MAMPNEENLDFMIEEIREKLNMVNVGVLDPEKYDNANYED-LTDIYDMVK--KK-ENFSPSEMQAIADEL 66 (71)
T ss_pred CCCcchhhHHHHHHHHHHHHhhhhhhccCHHhcccccHHH-HHHHHHHHH--Hh-ccCCHHHHHHHHHHH
Confidence 56677888887752 22221 45555 455666665 22 677777777666543
No 84
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=21.26 E-value=5.8e+02 Score=27.00 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCchhHh-HhhhHHHHHHHH
Q 024800 149 AAENTMLSYKAAQDIALTDLAPTHPIRLG-LALNFSVFYYEI 189 (262)
Q Consensus 149 ~~e~A~~aY~~A~~~a~~~L~pt~PirLg-LaLN~SVF~yEi 189 (262)
--++.++|-++|+.+|...+.|.-.+-|= =+||..+|||+-
T Consensus 700 d~krVlECLQKaLriAds~md~~~~~~LfveILn~ylyf~~~ 741 (762)
T PF03635_consen 700 DGKRVLECLQKALRIADSCMDPSQSVQLFVEILNRYLYFFEK 741 (762)
T ss_dssp -HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhhc
Confidence 35678999999999999888755444433 379999999963
No 85
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=21.03 E-value=1.8e+02 Score=20.26 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=17.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhh
Q 024800 12 LAKLAEQAERYEEMVKFMDSLVT 34 (262)
Q Consensus 12 ~Aklaeq~eRy~Dm~~~mk~~i~ 34 (262)
...=.=|.|+|+++.+|+++++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 33334478999999999999985
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.02 E-value=1.4e+02 Score=27.12 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHhHhhhHHHHHHHHhCCHHHHHHHHHHHH
Q 024800 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAF 204 (262)
Q Consensus 150 ~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~af 204 (262)
.+.|.+.|++|+.++ |- .=-+-=||.-|++.- |.+++|...-.+|.
T Consensus 85 ~~~A~e~YrkAlsl~-----p~---~GdVLNNYG~FLC~q-g~~~eA~q~F~~Al 130 (250)
T COG3063 85 NDLADESYRKALSLA-----PN---NGDVLNNYGAFLCAQ-GRPEEAMQQFERAL 130 (250)
T ss_pred hhhHHHHHHHHHhcC-----CC---ccchhhhhhHHHHhC-CChHHHHHHHHHHH
Confidence 466899999998755 22 223455899999985 69998877655443
No 87
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=20.22 E-value=2.9e+02 Score=23.53 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=37.0
Q ss_pred HHhHHHHHHH-HHHhcC--HHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 024800 6 REQYVYLAKL-AEQAER--YEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSI 71 (262)
Q Consensus 6 re~l~~~Akl-aeq~eR--y~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~i 71 (262)
-+-+..+|.+ ..+.|+ ++++...+.+.+. .+ |. +.+=+.+|..++-. .+....|......+
T Consensus 107 ~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~d-P~-~~~al~~LA~~~~~-~g~~~~Ai~~~~~a 170 (198)
T PRK10370 107 AELYAALATVLYYQAGQHMTPQTREMIDKALA--LD-AN-EVTALMLLASDAFM-QADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hC-CC-ChhHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 3455666774 467777 5888888888886 43 33 45566666666643 45555555555443
Done!