Query 024802
Match_columns 262
No_of_seqs 233 out of 1332
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:31:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 2E-42 4.3E-47 315.4 19.2 175 80-261 2-186 (316)
2 COG0656 ARA1 Aldo/keto reducta 100.0 4.4E-42 9.4E-47 305.1 15.2 160 88-261 11-172 (280)
3 KOG1575 Voltage-gated shaker-l 100.0 2.6E-41 5.7E-46 305.7 18.3 180 77-262 10-197 (336)
4 TIGR01293 Kv_beta voltage-depe 100.0 4E-39 8.8E-44 293.8 18.1 173 81-261 1-185 (317)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 3.3E-38 7.1E-43 291.2 19.8 174 80-261 14-202 (346)
6 PLN02587 L-galactose dehydroge 100.0 2.9E-38 6.2E-43 287.8 19.2 175 81-260 1-185 (314)
7 KOG1577 Aldo/keto reductase fa 100.0 1.7E-38 3.6E-43 282.9 15.2 168 79-260 6-189 (300)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 9.1E-38 2E-42 279.4 19.0 173 81-261 1-179 (285)
9 PRK14863 bifunctional regulato 100.0 1E-37 2.2E-42 281.8 15.9 162 88-261 2-171 (292)
10 PRK10625 tas putative aldo-ket 100.0 4.8E-37 1E-41 283.3 19.6 171 81-261 3-214 (346)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 3.7E-37 8E-42 274.7 17.5 155 90-260 2-160 (267)
12 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.1E-36 2.4E-41 272.8 15.9 158 86-260 10-168 (275)
13 PRK10376 putative oxidoreducta 100.0 7.1E-36 1.5E-40 269.4 19.4 171 80-261 8-194 (290)
14 PF00248 Aldo_ket_red: Aldo/ke 100.0 6.5E-35 1.4E-39 260.7 14.7 161 93-260 1-167 (283)
15 COG4989 Predicted oxidoreducta 100.0 6.7E-34 1.5E-38 245.2 11.6 173 81-261 3-188 (298)
16 COG1453 Predicted oxidoreducta 100.0 6.6E-31 1.4E-35 237.4 15.4 172 80-260 2-180 (391)
17 KOG1576 Predicted oxidoreducta 100.0 2.8E-30 6E-35 224.5 14.0 171 80-257 23-207 (342)
18 KOG3023 Glutamate-cysteine lig 97.4 0.00017 3.6E-09 62.9 4.6 48 209-256 155-203 (285)
19 PRK00208 thiG thiazole synthas 84.8 28 0.00061 30.9 14.2 76 169-245 69-144 (250)
20 TIGR01228 hutU urocanate hydra 84.1 2.5 5.4E-05 41.0 5.9 157 74-255 66-258 (545)
21 PRK05414 urocanate hydratase; 83.6 2.8 6E-05 40.8 6.0 158 73-255 74-267 (556)
22 cd04728 ThiG Thiazole synthase 83.2 33 0.00071 30.5 14.6 76 169-245 69-144 (248)
23 COG2987 HutU Urocanate hydrata 79.0 3.8 8.1E-05 39.4 5.1 57 187-251 205-261 (561)
24 PRK13796 GTPase YqeH; Provisio 76.9 52 0.0011 30.7 12.2 138 92-241 34-179 (365)
25 PF01175 Urocanase: Urocanase; 75.7 5.1 0.00011 39.0 5.1 158 73-255 64-257 (546)
26 PF05690 ThiG: Thiazole biosyn 75.4 12 0.00025 33.1 6.8 74 171-245 71-144 (247)
27 PRK13958 N-(5'-phosphoribosyl) 73.0 15 0.00033 31.5 7.0 66 186-255 17-83 (207)
28 cd03174 DRE_TIM_metallolyase D 69.3 35 0.00077 29.6 8.7 74 172-247 15-89 (265)
29 COG2022 ThiG Uncharacterized e 65.9 28 0.0006 30.8 7.0 73 170-243 77-149 (262)
30 COG0635 HemN Coproporphyrinoge 65.4 48 0.001 31.6 9.3 61 173-235 201-276 (416)
31 COG1748 LYS9 Saccharopine dehy 63.5 43 0.00094 31.7 8.4 80 112-205 80-159 (389)
32 PRK01222 N-(5'-phosphoribosyl) 61.4 27 0.0006 29.9 6.3 66 186-255 19-85 (210)
33 PLN02363 phosphoribosylanthran 60.3 32 0.0007 30.6 6.7 74 174-255 56-130 (256)
34 cd07948 DRE_TIM_HCS Saccharomy 59.9 1.3E+02 0.0027 26.8 12.5 23 109-131 20-42 (262)
35 cd06543 GH18_PF-ChiA-like PF-C 59.5 1.3E+02 0.0029 27.2 10.6 81 172-253 86-176 (294)
36 PF03102 NeuB: NeuB family; I 58.9 44 0.00096 29.5 7.3 114 108-237 53-184 (241)
37 PRK05692 hydroxymethylglutaryl 56.9 48 0.001 29.9 7.3 74 173-249 23-96 (287)
38 PRK09140 2-dehydro-3-deoxy-6-p 55.0 1.3E+02 0.0029 25.6 13.0 108 108-247 19-126 (206)
39 TIGR03822 AblA_like_2 lysine-2 54.0 1.8E+02 0.0038 26.6 14.3 134 108-254 119-268 (321)
40 PF13407 Peripla_BP_4: Peripla 53.9 67 0.0015 27.2 7.6 71 176-253 14-88 (257)
41 PRK09058 coproporphyrinogen II 53.8 2E+02 0.0043 27.6 11.4 62 172-235 226-304 (449)
42 PRK13361 molybdenum cofactor b 52.2 1.9E+02 0.004 26.4 15.0 135 107-258 44-194 (329)
43 PRK02399 hypothetical protein; 50.8 51 0.0011 31.5 6.6 60 182-248 201-274 (406)
44 PRK08195 4-hyroxy-2-oxovalerat 50.2 2.1E+02 0.0046 26.4 11.9 24 108-131 22-45 (337)
45 PRK07455 keto-hydroxyglutarate 49.1 1.6E+02 0.0034 24.7 11.6 107 108-247 21-127 (187)
46 cd04740 DHOD_1B_like Dihydroor 48.6 2E+02 0.0043 25.6 13.2 131 109-253 100-259 (296)
47 PRK11840 bifunctional sulfur c 48.4 2.3E+02 0.0049 26.3 14.3 76 169-245 143-218 (326)
48 PRK05628 coproporphyrinogen II 47.7 2.3E+02 0.005 26.2 10.6 61 172-235 171-248 (375)
49 PRK10128 2-keto-3-deoxy-L-rham 47.3 1E+02 0.0022 27.6 7.8 67 190-258 166-243 (267)
50 PRK09613 thiH thiamine biosynt 46.2 1.8E+02 0.004 28.3 9.8 83 172-257 114-203 (469)
51 PRK07259 dihydroorotate dehydr 46.1 2.2E+02 0.0048 25.5 11.5 130 109-252 102-261 (301)
52 CHL00162 thiG thiamin biosynth 44.9 2.3E+02 0.005 25.4 9.4 75 170-245 78-158 (267)
53 PRK00730 rnpA ribonuclease P; 44.4 1.4E+02 0.003 24.1 7.4 62 157-222 47-110 (138)
54 cd07939 DRE_TIM_NifV Streptomy 44.0 2.1E+02 0.0046 25.0 9.3 70 172-249 16-86 (259)
55 TIGR02090 LEU1_arch isopropylm 43.8 2E+02 0.0043 26.8 9.4 24 109-132 20-43 (363)
56 PRK15108 biotin synthase; Prov 43.8 2.4E+02 0.0052 26.0 10.0 71 173-247 76-148 (345)
57 PRK00164 moaA molybdenum cofac 42.8 2.6E+02 0.0056 25.3 15.5 135 107-258 48-198 (331)
58 PF14387 DUF4418: Domain of un 42.3 14 0.0003 29.3 1.3 17 3-19 31-47 (124)
59 cd07948 DRE_TIM_HCS Saccharomy 41.4 1.2E+02 0.0025 27.0 7.2 75 172-254 18-93 (262)
60 COG0135 TrpF Phosphoribosylant 41.3 90 0.002 26.9 6.2 63 187-255 19-83 (208)
61 PF05049 IIGP: Interferon-indu 40.6 1.2E+02 0.0027 28.6 7.5 81 130-217 122-214 (376)
62 TIGR00221 nagA N-acetylglucosa 40.3 3.2E+02 0.0069 25.7 13.8 136 108-251 74-218 (380)
63 PF00682 HMGL-like: HMGL-like 39.6 2.4E+02 0.0052 24.0 13.6 120 108-242 11-143 (237)
64 TIGR00126 deoC deoxyribose-pho 39.2 2.4E+02 0.0051 24.3 8.6 71 108-193 129-205 (211)
65 TIGR02666 moaA molybdenum cofa 39.1 3E+02 0.0064 25.0 15.6 119 108-243 43-176 (334)
66 cd00452 KDPG_aldolase KDPG and 38.9 2.3E+02 0.0049 23.5 13.8 105 109-246 14-118 (190)
67 cd08319 Death_RAIDD Death doma 38.7 27 0.00058 25.6 2.2 68 178-252 12-80 (83)
68 PRK15408 autoinducer 2-binding 37.9 3.1E+02 0.0067 25.0 9.7 84 159-252 25-112 (336)
69 PRK04390 rnpA ribonuclease P; 37.5 1.9E+02 0.0042 22.4 7.7 63 158-222 46-110 (120)
70 PRK06294 coproporphyrinogen II 37.1 3.5E+02 0.0075 25.2 10.9 62 172-235 166-243 (370)
71 PRK13347 coproporphyrinogen II 36.8 3.9E+02 0.0084 25.6 10.8 61 173-235 216-291 (453)
72 PF06174 DUF987: Protein of un 36.6 13 0.00029 25.6 0.3 9 5-13 35-43 (66)
73 TIGR00689 rpiB_lacA_lacB sugar 35.9 2.4E+02 0.0051 22.9 8.2 80 173-255 7-88 (144)
74 PRK12613 galactose-6-phosphate 35.8 2.4E+02 0.0051 22.8 7.5 78 172-255 8-87 (141)
75 PRK06256 biotin synthase; Vali 35.7 3.4E+02 0.0073 24.6 12.3 118 108-243 91-223 (336)
76 COG3867 Arabinogalactan endo-1 35.4 3.7E+02 0.008 25.0 9.7 123 116-254 47-178 (403)
77 PF00682 HMGL-like: HMGL-like 35.2 2.1E+02 0.0045 24.5 7.7 78 173-257 11-92 (237)
78 PRK03031 rnpA ribonuclease P; 35.2 2.1E+02 0.0046 22.2 7.5 63 158-222 49-114 (122)
79 TIGR02811 formate_TAT formate 35.2 40 0.00088 23.6 2.6 14 17-30 8-23 (66)
80 PRK09427 bifunctional indole-3 34.7 1.1E+02 0.0025 29.5 6.4 65 186-256 273-338 (454)
81 PRK13803 bifunctional phosphor 34.1 1.3E+02 0.0028 30.3 6.9 75 174-255 12-87 (610)
82 TIGR00035 asp_race aspartate r 33.9 3E+02 0.0066 23.5 8.6 69 174-243 15-95 (229)
83 PRK05718 keto-hydroxyglutarate 33.9 2.7E+02 0.0058 24.0 8.1 41 108-148 24-64 (212)
84 PRK07535 methyltetrahydrofolat 33.7 3.4E+02 0.0074 24.1 11.3 26 209-234 173-200 (261)
85 TIGR02660 nifV_homocitr homoci 33.6 2.1E+02 0.0045 26.7 7.8 78 172-257 19-97 (365)
86 cd03770 SR_TndX_transposase Se 33.5 70 0.0015 25.3 4.1 46 179-224 54-100 (140)
87 TIGR01664 DNA-3'-Pase DNA 3'-p 33.4 2.6E+02 0.0057 22.7 10.0 90 159-248 60-158 (166)
88 PRK10508 hypothetical protein; 32.3 73 0.0016 29.4 4.5 42 173-220 286-327 (333)
89 PF06792 UPF0261: Uncharacteri 32.3 1E+02 0.0022 29.4 5.5 61 182-249 200-274 (403)
90 PF00072 Response_reg: Respons 31.8 1.7E+02 0.0038 20.8 5.9 55 187-245 37-93 (112)
91 cd00959 DeoC 2-deoxyribose-5-p 31.8 2E+02 0.0043 24.2 6.9 27 109-135 129-155 (203)
92 PRK07379 coproporphyrinogen II 31.6 4.4E+02 0.0096 24.8 10.7 61 173-235 179-255 (400)
93 TIGR00126 deoC deoxyribose-pho 31.6 3.2E+02 0.007 23.5 8.2 133 107-254 14-152 (211)
94 PRK05571 ribose-5-phosphate is 31.6 2.9E+02 0.0062 22.5 8.1 81 173-255 9-91 (148)
95 cd05006 SIS_GmhA Phosphoheptos 31.1 75 0.0016 26.0 4.1 47 193-243 101-147 (177)
96 TIGR03597 GTPase_YqeH ribosome 31.0 4.3E+02 0.0094 24.5 11.1 137 92-240 28-172 (360)
97 PRK05283 deoxyribose-phosphate 30.9 3.9E+02 0.0084 23.9 8.9 77 109-195 144-227 (257)
98 COG2089 SpsE Sialic acid synth 30.8 4.5E+02 0.0097 24.5 10.8 118 108-241 87-222 (347)
99 cd07937 DRE_TIM_PC_TC_5S Pyruv 30.6 3.9E+02 0.0084 23.7 14.2 25 108-132 18-42 (275)
100 PF15221 LEP503: Lens epitheli 30.6 27 0.00059 23.5 1.0 21 79-99 15-35 (61)
101 PLN02775 Probable dihydrodipic 30.5 3.3E+02 0.0072 24.7 8.3 69 182-256 68-137 (286)
102 PLN02746 hydroxymethylglutaryl 30.4 2.5E+02 0.0054 26.2 7.7 68 178-249 69-138 (347)
103 PRK01313 rnpA ribonuclease P; 29.7 2.8E+02 0.0062 21.9 7.3 61 158-221 49-113 (129)
104 cd00405 PRAI Phosphoribosylant 29.5 1.5E+02 0.0032 24.9 5.7 43 194-241 74-116 (203)
105 PF02502 LacAB_rpiB: Ribose/Ga 29.0 3E+02 0.0064 22.1 7.0 81 173-256 8-90 (140)
106 COG4464 CapC Capsular polysacc 28.7 3.6E+02 0.0078 23.7 7.8 43 105-147 14-61 (254)
107 PRK00507 deoxyribose-phosphate 28.2 3.7E+02 0.008 23.3 8.0 119 107-243 18-143 (221)
108 PRK13015 3-dehydroquinate dehy 28.0 2.4E+02 0.0052 23.0 6.3 74 172-255 25-101 (146)
109 cd00338 Ser_Recombinase Serine 27.7 1.1E+02 0.0023 23.4 4.2 52 179-231 51-102 (137)
110 TIGR01120 rpiB ribose 5-phosph 27.4 3.3E+02 0.0073 22.0 8.4 81 172-255 7-89 (143)
111 cd00466 DHQase_II Dehydroquina 27.3 2E+02 0.0043 23.3 5.6 74 172-255 23-99 (140)
112 TIGR02990 ectoine_eutA ectoine 27.1 4.3E+02 0.0093 23.1 9.7 139 89-254 70-216 (239)
113 PRK14461 ribosomal RNA large s 27.0 3E+02 0.0066 26.0 7.7 61 197-259 232-318 (371)
114 PF00697 PRAI: N-(5'phosphorib 27.0 2E+02 0.0044 24.1 6.1 66 185-256 14-80 (197)
115 PLN02746 hydroxymethylglutaryl 26.9 5.2E+02 0.011 24.1 13.2 133 108-243 65-233 (347)
116 PF01118 Semialdhyde_dh: Semia 26.7 91 0.002 23.8 3.6 27 109-135 75-101 (121)
117 PRK08622 galactose-6-phosphate 26.6 3.8E+02 0.0083 22.4 8.3 80 173-255 9-90 (171)
118 PF08734 GYD: GYD domain; Int 26.6 2.6E+02 0.0057 20.5 7.4 67 176-242 19-90 (91)
119 PRK09249 coproporphyrinogen II 26.4 5.8E+02 0.012 24.4 10.5 62 172-235 214-290 (453)
120 PRK08446 coproporphyrinogen II 26.0 5.2E+02 0.011 23.7 10.2 61 173-235 162-231 (350)
121 PRK06806 fructose-bisphosphate 25.8 4.9E+02 0.011 23.4 11.4 126 114-246 87-224 (281)
122 TIGR01278 DPOR_BchB light-inde 25.8 5.8E+02 0.013 24.9 9.8 73 176-248 98-191 (511)
123 PRK07114 keto-hydroxyglutarate 25.8 4.4E+02 0.0096 22.9 8.1 36 109-144 25-60 (222)
124 PRK00499 rnpA ribonuclease P; 25.7 3E+02 0.0066 20.9 7.4 63 157-222 39-104 (114)
125 cd07943 DRE_TIM_HOA 4-hydroxy- 25.7 4.5E+02 0.0098 23.0 14.4 24 108-131 19-42 (263)
126 COG1751 Uncharacterized conser 25.4 2.2E+02 0.0047 23.7 5.5 74 109-192 12-85 (186)
127 cd04734 OYE_like_3_FMN Old yel 25.4 5.4E+02 0.012 23.7 12.7 34 212-245 273-307 (343)
128 PRK04820 rnpA ribonuclease P; 25.3 3.7E+02 0.008 21.8 7.6 62 159-222 51-114 (145)
129 PRK12558 glutamyl-tRNA synthet 25.1 2.2E+02 0.0049 27.5 6.6 60 174-242 49-108 (445)
130 PRK05660 HemN family oxidoredu 25.0 5.6E+02 0.012 23.8 10.1 62 173-236 171-244 (378)
131 TIGR02351 thiH thiazole biosyn 25.0 5.6E+02 0.012 23.8 9.7 82 173-257 103-185 (366)
132 PRK06015 keto-hydroxyglutarate 24.9 4.4E+02 0.0096 22.5 8.1 37 108-144 13-49 (201)
133 TIGR01182 eda Entner-Doudoroff 24.8 4.5E+02 0.0096 22.5 8.2 41 108-148 17-57 (204)
134 PTZ00402 glutamyl-tRNA synthet 24.7 3.8E+02 0.0081 27.1 8.2 63 174-245 99-162 (601)
135 PRK06740 histidinol-phosphatas 24.4 5.6E+02 0.012 23.5 11.0 51 180-231 156-222 (331)
136 PF07745 Glyco_hydro_53: Glyco 24.2 2.6E+02 0.0057 25.9 6.6 116 118-253 10-131 (332)
137 COG3623 SgaU Putative L-xylulo 24.1 79 0.0017 28.1 3.0 49 84-132 63-117 (287)
138 TIGR02090 LEU1_arch isopropylm 24.1 4.3E+02 0.0093 24.6 8.2 77 172-256 18-95 (363)
139 COG1121 ZnuC ABC-type Mn/Zn tr 24.0 4E+02 0.0086 23.8 7.5 48 193-242 157-206 (254)
140 cd07945 DRE_TIM_CMS Leptospira 23.8 5.3E+02 0.011 23.0 13.0 69 173-243 108-183 (280)
141 PRK11267 biopolymer transport 23.7 2.4E+02 0.0052 22.3 5.6 54 173-232 81-134 (141)
142 PRK08609 hypothetical protein; 23.7 3.7E+02 0.0081 26.8 8.1 22 113-134 351-372 (570)
143 PRK12615 galactose-6-phosphate 23.5 4.4E+02 0.0096 22.0 8.0 80 173-255 9-90 (171)
144 cd03768 SR_ResInv Serine Recom 23.3 1.7E+02 0.0036 22.1 4.6 44 179-224 42-85 (126)
145 PLN03233 putative glutamate-tR 23.3 3.5E+02 0.0076 26.8 7.6 60 174-242 58-117 (523)
146 cd06300 PBP1_ABC_sugar_binding 23.2 4.6E+02 0.0099 22.1 9.4 70 176-251 15-91 (272)
147 PRK08208 coproporphyrinogen II 22.9 4.4E+02 0.0096 25.0 8.2 61 172-235 204-275 (430)
148 TIGR01428 HAD_type_II 2-haloal 22.7 1.7E+02 0.0038 23.9 4.8 64 178-244 61-128 (198)
149 PF07021 MetW: Methionine bios 22.7 1.9E+02 0.004 24.8 4.9 123 115-259 5-139 (193)
150 COG4152 ABC-type uncharacteriz 22.7 5.8E+02 0.013 23.1 8.7 70 172-243 101-198 (300)
151 COG0820 Predicted Fe-S-cluster 22.6 3.3E+02 0.0071 25.5 6.9 61 197-259 216-296 (349)
152 PRK13938 phosphoheptose isomer 22.5 4.8E+02 0.01 22.1 8.4 55 183-242 104-158 (196)
153 TIGR00433 bioB biotin syntheta 22.5 5.3E+02 0.012 22.6 9.1 7 217-223 127-133 (296)
154 PF00491 Arginase: Arginase fa 22.5 2.4E+02 0.0053 24.8 6.0 55 181-236 187-256 (277)
155 PRK00396 rnpA ribonuclease P; 22.3 4E+02 0.0086 21.1 6.9 62 159-222 49-112 (130)
156 TIGR01088 aroQ 3-dehydroquinat 22.3 2.8E+02 0.0062 22.4 5.7 74 172-255 23-99 (141)
157 cd00668 Ile_Leu_Val_MetRS_core 22.2 1.2E+02 0.0027 27.2 4.1 48 176-227 82-131 (312)
158 PRK07945 hypothetical protein; 22.1 6.2E+02 0.013 23.2 9.7 24 111-134 111-134 (335)
159 PRK11024 colicin uptake protei 22.0 2.5E+02 0.0054 22.2 5.4 53 173-231 85-137 (141)
160 COG4626 Phage terminase-like p 22.0 2.4E+02 0.0052 28.1 6.1 41 209-249 412-453 (546)
161 TIGR02311 HpaI 2,4-dihydroxyhe 21.8 3.4E+02 0.0074 23.8 6.7 65 191-257 161-236 (249)
162 COG2949 SanA Uncharacterized m 21.8 1.2E+02 0.0026 26.5 3.5 47 177-224 77-123 (235)
163 TIGR01119 lacB galactose-6-pho 21.7 4.8E+02 0.01 21.8 8.3 81 172-255 8-90 (171)
164 cd05008 SIS_GlmS_GlmD_1 SIS (S 21.4 1.8E+02 0.004 21.8 4.4 47 193-243 46-92 (126)
165 cd00814 MetRS_core catalytic c 20.9 1.4E+02 0.0029 27.2 4.1 45 176-225 69-114 (319)
166 PRK04156 gltX glutamyl-tRNA sy 20.9 4.5E+02 0.0097 26.3 7.9 61 176-245 152-212 (567)
167 cd07942 DRE_TIM_LeuA Mycobacte 20.7 6.2E+02 0.014 22.7 8.9 36 109-144 21-58 (284)
168 TIGR00538 hemN oxygen-independ 20.6 7.5E+02 0.016 23.6 11.4 61 173-235 215-290 (455)
169 PRK08621 galactose-6-phosphate 20.5 4.6E+02 0.01 21.2 7.2 66 173-243 9-75 (142)
170 PF09639 YjcQ: YjcQ protein; 20.4 93 0.002 22.8 2.4 23 210-232 25-47 (88)
171 PF00154 RecA: recA bacterial 20.4 2E+02 0.0043 26.6 5.0 42 184-230 96-137 (322)
172 cd05014 SIS_Kpsf KpsF-like pro 20.4 1.7E+02 0.0036 22.1 4.0 46 194-243 48-93 (128)
173 cd05710 SIS_1 A subgroup of th 20.2 1.9E+02 0.0041 22.0 4.3 45 195-243 49-93 (120)
174 cd05007 SIS_Etherase N-acetylm 20.1 2.9E+02 0.0062 24.4 5.9 56 184-243 109-164 (257)
175 KOG0544 FKBP-type peptidyl-pro 20.1 33 0.00072 26.0 -0.1 7 4-10 23-29 (108)
176 PRK13307 bifunctional formalde 20.0 7.6E+02 0.016 23.4 11.6 56 192-249 298-355 (391)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=2e-42 Score=315.44 Aligned_cols=175 Identities=25% Similarity=0.324 Sum_probs=156.8
Q ss_pred eeeecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCC--ChhHHHHHHHhhccccCCCcee
Q 024802 80 ITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRVRRERPPEFL 157 (262)
Q Consensus 80 ~~~~lG~tG~~Vs~lGlGt~~~~~~~~~~~~~~~~~~l~~A~d~Gi~~fDTA~~YG--~sE~~lG~al~~~~r~r~~~~~ 157 (262)
.++.+|++|++||+||||||.+++.+...+.+++.++|++|+|+||||||||++|| .+|++||++|++.++ |.
T Consensus 2 ~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~-Rd---- 76 (316)
T COG0667 2 KYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGR-RD---- 76 (316)
T ss_pred CceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCC-CC----
Confidence 36889999999999999999998755556667888899999999999999999998 599999999998653 33
Q ss_pred eeEEeecccCCCC--------CCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEE
Q 024802 158 DKVRGLTKWVPPP--------VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVA 229 (262)
Q Consensus 158 ~~v~i~tK~~~~~--------~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IG 229 (262)
+++|+||+.... .++++++|+++++.||+|||||||||||+||||+..+ .++++++|++++++|+||+||
T Consensus 77 -~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p-~~e~~~aL~~l~~~G~ir~iG 154 (316)
T COG0667 77 -KVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETP-IEETLEALDELVREGKIRYIG 154 (316)
T ss_pred -eEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEEE
Confidence 888899974321 4579999999999999999999999999999999888 889999999999999999999
Q ss_pred ecCcCHHHHHHHHHcCCCEEEEeecccccccc
Q 024802 230 LTNFDTERLRIILENGIPVVSNQVWHSNGWFV 261 (262)
Q Consensus 230 vSn~~~~~l~~~~~~g~~~~~~Q~~ys~~~r~ 261 (262)
+||++++++.++++...+++++|.+||+++|.
T Consensus 155 ~S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~R~ 186 (316)
T COG0667 155 VSNYSAEQIAEALAVAAPIDSLQPEYNLLERD 186 (316)
T ss_pred ecCCCHHHHHHHHHhcCCceeecccCcccccc
Confidence 99999999999987545899999999999975
No 2
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=4.4e-42 Score=305.14 Aligned_cols=160 Identities=23% Similarity=0.288 Sum_probs=141.8
Q ss_pred ccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCChhHHHHHHHhhccccCCCceeeeEEeecccC
Q 024802 88 SLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWV 167 (262)
Q Consensus 88 G~~Vs~lGlGt~~~~~~~~~~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~ 167 (262)
|.+||.||||||++++. +.+.+++.+|++.|+|+||||..|| +|+.+|+++++.+.+|+ ++||+||+|
T Consensus 11 g~~iP~iGlGt~~~~~~------~~~~~av~~Al~~Gyr~IDTA~~Yg-nE~~VG~aI~~s~v~Re-----elFittKvw 78 (280)
T COG0656 11 GVEIPAIGLGTWQIGDD------EWAVRAVRAALELGYRLIDTAEIYG-NEEEVGEAIKESGVPRE-----ELFITTKVW 78 (280)
T ss_pred CCcccCcceEeeecCCc------hhHHHHHHHHHHhCcceEecHhHhc-CHHHHHHHHHhcCCCHH-----HeEEEeecC
Confidence 36799999999999751 3389999999999999999999999 57778999998554443 999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCC-CCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHc-C
Q 024802 168 PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-G 245 (262)
Q Consensus 168 ~~~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~-~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~-g 245 (262)
+. +.+++.+.+++++||+|||+||||||++|||.+. ...+.|+|++||+++++|+||+||||||+.++|+++++. +
T Consensus 79 ~~--~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~ 156 (280)
T COG0656 79 PS--DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAK 156 (280)
T ss_pred Cc--cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcC
Confidence 87 5688999999999999999999999999999764 222679999999999999999999999999999999985 6
Q ss_pred CCEEEEeecccccccc
Q 024802 246 IPVVSNQVWHSNGWFV 261 (262)
Q Consensus 246 ~~~~~~Q~~ys~~~r~ 261 (262)
++|++||++|||+.|-
T Consensus 157 ~~p~~NQIe~hp~~~q 172 (280)
T COG0656 157 VKPAVNQIEYHPYLRQ 172 (280)
T ss_pred CCCceEEEEeccCCCc
Confidence 8899999999999873
No 3
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2.6e-41 Score=305.69 Aligned_cols=180 Identities=30% Similarity=0.374 Sum_probs=160.8
Q ss_pred CceeeeecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCC--ChhHHHHHHHhhccccCCC
Q 024802 77 KQSITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRVRRERPP 154 (262)
Q Consensus 77 ~~~~~~~lG~tG~~Vs~lGlGt~~~~~~~~~~~~~~~~~~l~~A~d~Gi~~fDTA~~YG--~sE~~lG~al~~~~r~r~~ 154 (262)
....++++|++|++||++|||||.+...++..+++++.++++.|+|+|+||||||++|| .+|+++|+++++.+..|.
T Consensus 10 ~~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~- 88 (336)
T KOG1575|consen 10 LGMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRD- 88 (336)
T ss_pred hcceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCC-
Confidence 44579999999999999999998655433447999999999999999999999999998 599999999999765555
Q ss_pred ceeeeEEeecccCCC-----CCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEE
Q 024802 155 EFLDKVRGLTKWVPP-----PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVA 229 (262)
Q Consensus 155 ~~~~~v~i~tK~~~~-----~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IG 229 (262)
+++++||+... +...++..+...++.||+|||++||||||+||||+..| +++++++|.+++++|+|+|||
T Consensus 89 ----~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~p-iee~m~aL~~lve~Gki~yiG 163 (336)
T KOG1575|consen 89 ----KVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVP-IEETMRALTDLVEQGKIRYWG 163 (336)
T ss_pred ----cEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCC-HHHHHHHHHHHHhcCceEEEE
Confidence 78888886432 35678889999999999999999999999999999999 999999999999999999999
Q ss_pred ecCcCHHHHHHHHHc-CCCEEEEeeccccccccC
Q 024802 230 LTNFDTERLRIILEN-GIPVVSNQVWHSNGWFVI 262 (262)
Q Consensus 230 vSn~~~~~l~~~~~~-g~~~~~~Q~~ys~~~r~i 262 (262)
+|+++++++++++.. .+||+++|++||++.|.+
T Consensus 164 lSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ 197 (336)
T KOG1575|consen 164 LSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDK 197 (336)
T ss_pred eccCCHHHHHHHHHhcCCCceEeeeechhhhcch
Confidence 999999999999986 377999999999999974
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=4e-39 Score=293.81 Aligned_cols=173 Identities=18% Similarity=0.194 Sum_probs=148.6
Q ss_pred eeecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCC--ChhHHHHHHHhhccccCCCceee
Q 024802 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRVRRERPPEFLD 158 (262)
Q Consensus 81 ~~~lG~tG~~Vs~lGlGt~~~~~~~~~~~~~~~~~~l~~A~d~Gi~~fDTA~~YG--~sE~~lG~al~~~~r~r~~~~~~ 158 (262)
+|++|++|++||+||||||.+.+ +..+++++.++++.|++.|||+||||+.|| .+|+++|++|++.+..|.
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g--~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~----- 73 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFG--GQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRS----- 73 (317)
T ss_pred CcccCCCCCeecceeecCCccCC--CCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcc-----
Confidence 46799999999999999997432 145788999999999999999999999997 599999999986432233
Q ss_pred eEEeecccCCC-----CCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCc
Q 024802 159 KVRGLTKWVPP-----PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF 233 (262)
Q Consensus 159 ~v~i~tK~~~~-----~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~ 233 (262)
+++|+||+... ..+.+++.+++++++||+|||+||||||++|||++..+ .+++|++|++|+++||||+||||||
T Consensus 74 ~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~-~~e~~~aL~~l~~~G~ir~iGvSn~ 152 (317)
T TIGR01293 74 SYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTP-MEETVRAMTYVINQGMAMYWGTSRW 152 (317)
T ss_pred cEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCC
Confidence 78899996321 13468999999999999999999999999999998777 8899999999999999999999999
Q ss_pred CHHHHHHHHH----cC-CCEEEEeecccccccc
Q 024802 234 DTERLRIILE----NG-IPVVSNQVWHSNGWFV 261 (262)
Q Consensus 234 ~~~~l~~~~~----~g-~~~~~~Q~~ys~~~r~ 261 (262)
++++++++.. .+ ++|+++|++||+++|.
T Consensus 153 ~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~ 185 (317)
T TIGR01293 153 SSMEIMEAYSVARQFNLIPPICEQAEYHMFQRE 185 (317)
T ss_pred CHHHHHHHHHHHHHcCCCCcceeccccChHhcc
Confidence 9999987653 23 6899999999999874
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=3.3e-38 Score=291.18 Aligned_cols=174 Identities=24% Similarity=0.298 Sum_probs=147.3
Q ss_pred eeeecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCC----hhHHHHHHHhhcc-ccCCC
Q 024802 80 ITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP----AEDLYGIFINRVR-RERPP 154 (262)
Q Consensus 80 ~~~~lG~tG~~Vs~lGlGt~~~~~~~~~~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~----sE~~lG~al~~~~-r~r~~ 154 (262)
.++++|++|++||+||||||+..+. ..+.+++.++++.|++.|||+||||+.||+ +|+++|++|++.. ..|
T Consensus 14 ~~r~lg~tg~~vs~lglG~~~~~g~--~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~R-- 89 (346)
T PRK09912 14 QYRYCGKSGLRLPALSLGLWHNFGH--VNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYR-- 89 (346)
T ss_pred ceeecCCCCcccccccccCccccCC--CCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCCC--
Confidence 4889999999999999999973221 235678899999999999999999999984 8999999997531 112
Q ss_pred ceeeeEEeecccC----CC--CCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEE
Q 024802 155 EFLDKVRGLTKWV----PP--PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV 228 (262)
Q Consensus 155 ~~~~~v~i~tK~~----~~--~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~I 228 (262)
.+++|+||+. +. ....+++++++++++||+|||+||||||++|||++..+ .+++|++|++|+++|||++|
T Consensus 90 ---d~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~-~~e~~~al~~l~~~GkIr~i 165 (346)
T PRK09912 90 ---DELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTP-MEETASALAHAVQSGKALYV 165 (346)
T ss_pred ---CeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEE
Confidence 3788999963 21 12467999999999999999999999999999998777 89999999999999999999
Q ss_pred EecCcCHHHHHHHHH----cCCCEEEEeecccccccc
Q 024802 229 ALTNFDTERLRIILE----NGIPVVSNQVWHSNGWFV 261 (262)
Q Consensus 229 GvSn~~~~~l~~~~~----~g~~~~~~Q~~ys~~~r~ 261 (262)
|||||++++++++.+ .+++++++|++||+++|.
T Consensus 166 GvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~ 202 (346)
T PRK09912 166 GISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRW 202 (346)
T ss_pred EecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecc
Confidence 999999999886554 257899999999999873
No 6
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=2.9e-38 Score=287.78 Aligned_cols=175 Identities=21% Similarity=0.281 Sum_probs=149.8
Q ss_pred eeecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCC--hhHHHHHHHhhccccCCCceee
Q 024802 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFLD 158 (262)
Q Consensus 81 ~~~lG~tG~~Vs~lGlGt~~~~~~~~~~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~--sE~~lG~al~~~~r~r~~~~~~ 158 (262)
+|+||+||++||+||||||++++.|+..+++++.++++.|++.|||+||||+.||. +|+++|++|++.+..|.
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~----- 75 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPRE----- 75 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcc-----
Confidence 46799999999999999999987777788899999999999999999999999976 99999999987543333
Q ss_pred eEEeecccCCC--CCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCC--cHHHHHHHHHHHHHcCCccEEEecCcC
Q 024802 159 KVRGLTKWVPP--PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP--GYLDALNHLTDLKEEGKIKTVALTNFD 234 (262)
Q Consensus 159 ~v~i~tK~~~~--~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~--~~~e~~~aL~~l~~~G~ir~IGvSn~~ 234 (262)
+++|+||+++. ..+++++.+++++++||+|||+||||+|++|||+...+ ..+++|++|++++++||||+||+|||+
T Consensus 76 ~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 155 (314)
T PLN02587 76 KYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLP 155 (314)
T ss_pred eEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 89999998642 13578999999999999999999999999999975321 257899999999999999999999999
Q ss_pred HHHHHHHHHc---C-CCEEEEeeccccccc
Q 024802 235 TERLRIILEN---G-IPVVSNQVWHSNGWF 260 (262)
Q Consensus 235 ~~~l~~~~~~---g-~~~~~~Q~~ys~~~r 260 (262)
+++++.+.+. + +.+..+|+.||+.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 185 (314)
T PLN02587 156 LAIFTYVLDRVPPGTVDVILSYCHYSLNDS 185 (314)
T ss_pred HHHHHHHHHhhhcCCCCeEEeccccCcchh
Confidence 9998877652 2 456667899988765
No 7
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.7e-38 Score=282.87 Aligned_cols=168 Identities=20% Similarity=0.331 Sum_probs=146.4
Q ss_pred eeeeecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCChhHHHHHHHhhccccCCCceee
Q 024802 79 SITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLD 158 (262)
Q Consensus 79 ~~~~~lG~tG~~Vs~lGlGt~~~~~~~~~~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~ 158 (262)
.++++.| .+||.||||||+. +++++.++++.|++.||||||||..||+.++ +|++|++.-.+.. ..++
T Consensus 6 ~~~Ln~G---~~mP~iGlGTw~~-------~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~e-vG~aik~~i~~~~-v~Re 73 (300)
T KOG1577|consen 6 TVKLNNG---FKMPIIGLGTWQS-------PPGQVAEAVKAAIKAGYRHIDTAHVYGNEKE-VGEAIKELLAEGG-VKRE 73 (300)
T ss_pred eEeccCC---CccceeeeEeccc-------ChhhHHHHHHHHHHhCcceeechhhhCChHH-HHHHHHHHhhhCC-cchh
Confidence 3566666 8999999999984 4578999999999999999999999999666 6999997543332 4566
Q ss_pred eEEeecccCCCCCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCC---------------CCcHHHHHHHHHHHHHcC
Q 024802 159 KVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---------------NPGYLDALNHLTDLKEEG 223 (262)
Q Consensus 159 ~v~i~tK~~~~~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~---------------~~~~~e~~~aL~~l~~~G 223 (262)
++|++||+|+. .+.++.++.++++||++||+||+|||++|||-.. ..++.++|++||+++++|
T Consensus 74 diFiTSKlw~~--~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~G 151 (300)
T KOG1577|consen 74 DIFITSKLWPT--DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEG 151 (300)
T ss_pred hheeeeccCcc--ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHcC
Confidence 99999999986 4799999999999999999999999999998653 123678999999999999
Q ss_pred CccEEEecCcCHHHHHHHHHc-CCCEEEEeeccccccc
Q 024802 224 KIKTVALTNFDTERLRIILEN-GIPVVSNQVWHSNGWF 260 (262)
Q Consensus 224 ~ir~IGvSn~~~~~l~~~~~~-g~~~~~~Q~~ys~~~r 260 (262)
++|+||||||+..+|++++.. .++|++||+|+||++.
T Consensus 152 l~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~ 189 (300)
T KOG1577|consen 152 LVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQ 189 (300)
T ss_pred CceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcC
Confidence 999999999999999999986 5899999999999864
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=9.1e-38 Score=279.41 Aligned_cols=173 Identities=31% Similarity=0.488 Sum_probs=154.5
Q ss_pred eeecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCC--hhHHHHHHHhhccccCCCceee
Q 024802 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFLD 158 (262)
Q Consensus 81 ~~~lG~tG~~Vs~lGlGt~~~~~~~~~~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~--sE~~lG~al~~~~r~r~~~~~~ 158 (262)
++++|++|++||+||||||.++..| .+.+++.++++.|++.|||+||||+.||. +|+.+|++|++.+ .|.
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~--~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~-~R~----- 72 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY--VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERG-PRE----- 72 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC--CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccC-CcC-----
Confidence 4679999999999999999987655 67889999999999999999999999987 9999999998765 233
Q ss_pred eEEeecccCCCC---CCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCH
Q 024802 159 KVRGLTKWVPPP---VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT 235 (262)
Q Consensus 159 ~v~i~tK~~~~~---~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~ 235 (262)
+++|+||+.+.. .+.+++.+++++++||++||+||||+|++|+|+...+...++|++|++++++|+||+||||||++
T Consensus 73 ~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~ 152 (285)
T cd06660 73 EVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSA 152 (285)
T ss_pred cEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCH
Confidence 889999987543 23689999999999999999999999999999876655789999999999999999999999999
Q ss_pred HHHHHHHHc-CCCEEEEeecccccccc
Q 024802 236 ERLRIILEN-GIPVVSNQVWHSNGWFV 261 (262)
Q Consensus 236 ~~l~~~~~~-g~~~~~~Q~~ys~~~r~ 261 (262)
+++.++.+. ..+|+++|++|||+++.
T Consensus 153 ~~l~~~~~~~~~~~~~~q~~~n~~~~~ 179 (285)
T cd06660 153 EQLEEALAAAGVPPAVNQVEYNLLDRQ 179 (285)
T ss_pred HHHHHHHHhhCCCceEEecccCcccCc
Confidence 999999876 37899999999999874
No 9
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1e-37 Score=281.78 Aligned_cols=162 Identities=21% Similarity=0.126 Sum_probs=140.0
Q ss_pred ccccCceeeccccCCCC-------CCCCCHHHHHHHHHHHHHcCCCEEecCCCCCChhHHHHHHHhhccccCCCceeeeE
Q 024802 88 SLEICRVLNGMWQTSGG-------WGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKV 160 (262)
Q Consensus 88 G~~Vs~lGlGt~~~~~~-------~~~~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v 160 (262)
+++||+||||||++|+. |+.++++++.++++.|++.||||||||+.||.+|+++|++|++. .+ .++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~--~~-----~~~ 74 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP--VP-----FRV 74 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC--Cc-----eEe
Confidence 47899999999999853 57789999999999999999999999999999999999999631 11 146
Q ss_pred EeecccCCCCCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCC-CCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHH
Q 024802 161 RGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLR 239 (262)
Q Consensus 161 ~i~tK~~~~~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~-~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~ 239 (262)
+++||.. +.+++.+++++++||+|||+||||+|++|+|++. .+..+++|++|++++++||||+||||||+++++.
T Consensus 75 ~i~tk~~----~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~ 150 (292)
T PRK14863 75 TLSTVRA----DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDDPV 150 (292)
T ss_pred ecccccc----cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHHH
Confidence 6777742 3478999999999999999999999999999763 3323678999999999999999999999999998
Q ss_pred HHHHcCCCEEEEeecccccccc
Q 024802 240 IILENGIPVVSNQVWHSNGWFV 261 (262)
Q Consensus 240 ~~~~~g~~~~~~Q~~ys~~~r~ 261 (262)
++... ++|+++|++||+++|.
T Consensus 151 ~~~~~-~~~~~~Q~~~n~l~~~ 171 (292)
T PRK14863 151 GVARR-FKPDILQAPASLLDQR 171 (292)
T ss_pred HHHhc-CCCCEEEecCCccccc
Confidence 87654 6899999999999873
No 10
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=4.8e-37 Score=283.31 Aligned_cols=171 Identities=21% Similarity=0.240 Sum_probs=145.7
Q ss_pred eeecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCC---------ChhHHHHHHHhhcccc
Q 024802 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG---------PAEDLYGIFINRVRRE 151 (262)
Q Consensus 81 ~~~lG~tG~~Vs~lGlGt~~~~~~~~~~~~~~~~~~l~~A~d~Gi~~fDTA~~YG---------~sE~~lG~al~~~~r~ 151 (262)
++++|++|++||+||||||++|. ..+++++.++++.|++.||||||||+.|| .+|+++|++|++.+ .
T Consensus 3 ~r~lg~t~~~vs~iglGt~~~g~---~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~~-~ 78 (346)
T PRK10625 3 YHRIPHSSLEVSTLGLGTMTFGE---QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKRG-S 78 (346)
T ss_pred ceecCCCCCccccEeEeccccCC---CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhcC-C
Confidence 68899999999999999999864 34678999999999999999999999995 49999999997532 2
Q ss_pred CCCceeeeEEeecccCCCC----------CCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCC----------------
Q 024802 152 RPPEFLDKVRGLTKWVPPP----------VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---------------- 205 (262)
Q Consensus 152 r~~~~~~~v~i~tK~~~~~----------~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~---------------- 205 (262)
|. +++|+||++... ...+++.+++++++||+|||+||||||++|||++.
T Consensus 79 R~-----~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~ 153 (346)
T PRK10625 79 RE-----KLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAP 153 (346)
T ss_pred cc-----eEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccC
Confidence 22 789999974211 14689999999999999999999999999999752
Q ss_pred -CCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHH----cCC-CEEEEeecccccccc
Q 024802 206 -NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGI-PVVSNQVWHSNGWFV 261 (262)
Q Consensus 206 -~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~----~g~-~~~~~Q~~ys~~~r~ 261 (262)
.+ ++++|++|++|+++|||++||||||+.++++++.. .+. .+.++|++||+++|.
T Consensus 154 ~~~-~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~ 214 (346)
T PRK10625 154 AVS-LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRS 214 (346)
T ss_pred CCC-HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCccccc
Confidence 23 78999999999999999999999999999887653 233 488999999998874
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=3.7e-37 Score=274.67 Aligned_cols=155 Identities=17% Similarity=0.215 Sum_probs=136.0
Q ss_pred ccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCChhHHHHHHHhhccccCCCceeeeEEeecccCCC
Q 024802 90 EICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPP 169 (262)
Q Consensus 90 ~Vs~lGlGt~~~~~~~~~~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~ 169 (262)
+||.||||||++++ +++.++++.|++.||||||||+.||+ |+.+|++|++.+..|. +++|+||+++.
T Consensus 2 ~vs~lglGt~~~~~-------~~~~~~i~~A~~~Gi~~~DTA~~Yg~-E~~lG~al~~~~~~R~-----~v~i~TK~~~~ 68 (267)
T PRK11172 2 SIPAFGLGTFRLKD-------QVVIDSVKTALELGYRAIDTAQIYDN-EAAVGQAIAESGVPRD-----ELFITTKIWID 68 (267)
T ss_pred CCCCEeeEccccCh-------HHHHHHHHHHHHcCCCEEEccchhCC-HHHHHHHHHHcCCChh-----HeEEEEEeCCC
Confidence 69999999998753 67999999999999999999999994 8999999986432233 89999998643
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCC--CCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHc-C-
Q 024802 170 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS--NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-G- 245 (262)
Q Consensus 170 ~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~--~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~-g- 245 (262)
..+++.+++++++||+|||+||||+|++|||++. .+ .+++|++|++++++||||+||||||+.++++++.+. +
T Consensus 69 --~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~-~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~ 145 (267)
T PRK11172 69 --NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVS-VEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGA 145 (267)
T ss_pred --CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCC-HHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCC
Confidence 4689999999999999999999999999999764 33 688999999999999999999999999999998874 3
Q ss_pred CCEEEEeeccccccc
Q 024802 246 IPVVSNQVWHSNGWF 260 (262)
Q Consensus 246 ~~~~~~Q~~ys~~~r 260 (262)
.+|+++|++|||+++
T Consensus 146 ~~~~~~Q~~~~~~~~ 160 (267)
T PRK11172 146 ENIATNQIELSPYLQ 160 (267)
T ss_pred CCCeEEeeecCCCCC
Confidence 378999999999876
No 12
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.1e-36 Score=272.82 Aligned_cols=158 Identities=22% Similarity=0.359 Sum_probs=139.4
Q ss_pred CCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCChhHHHHHHHhhccccCCCceeeeEEeecc
Q 024802 86 NDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTK 165 (262)
Q Consensus 86 ~tG~~Vs~lGlGt~~~~~~~~~~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK 165 (262)
++|++||.||||||+++ ++++.+++++|++.|+||||||+.|| +|+.+|++|++.+..|. +++|+||
T Consensus 10 ~~g~~v~~lglG~~~~~-------~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~E~~lG~al~~~~~~R~-----~~~i~tK 76 (275)
T PRK11565 10 QDGNVMPQLGLGVWQAS-------NEEVITAIHKALEVGYRSIDTAAIYK-NEEGVGKALKEASVARE-----ELFITTK 76 (275)
T ss_pred CCCCccCCcceECccCC-------HHHHHHHHHHHHHhCCCEEEchhhhC-CHHHHHHHHHHcCCCHH-----HEEEEEE
Confidence 56799999999999863 47899999999999999999999999 58889999986432233 7999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHc-
Q 024802 166 WVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN- 244 (262)
Q Consensus 166 ~~~~~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~- 244 (262)
+++. +++.+++++++||+|||+||||+|++|||++..+.+.++|++|++++++|+||+||||||++++++++.+.
T Consensus 77 ~~~~----~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~ 152 (275)
T PRK11565 77 LWND----DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDET 152 (275)
T ss_pred ecCc----chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHHHhC
Confidence 7543 67899999999999999999999999999876555789999999999999999999999999999998864
Q ss_pred CCCEEEEeeccccccc
Q 024802 245 GIPVVSNQVWHSNGWF 260 (262)
Q Consensus 245 g~~~~~~Q~~ys~~~r 260 (262)
+++|+++|++|||+.+
T Consensus 153 ~v~~~~~Q~~~~~~~~ 168 (275)
T PRK11565 153 GVTPVINQIELHPLMQ 168 (275)
T ss_pred CCCceeeeeecCCccc
Confidence 6789999999999875
No 13
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=7.1e-36 Score=269.39 Aligned_cols=171 Identities=19% Similarity=0.254 Sum_probs=143.4
Q ss_pred eeeecCCCccccCceeeccccCCC--CCCC-CCHHHHHHHHHHHHHcCCCEEecCCCCCC--hhHHHHHHHhhccccCCC
Q 024802 80 ITVSNGNDSLEICRVLNGMWQTSG--GWGR-IDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPP 154 (262)
Q Consensus 80 ~~~~lG~tG~~Vs~lGlGt~~~~~--~~~~-~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~--sE~~lG~al~~~~r~r~~ 154 (262)
-++.++ |++||+||||||++++ .||. .+++++.++++.|++.||||||||+.||+ +|+++|++++.. | .
T Consensus 8 ~~~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~~-R--~- 81 (290)
T PRK10376 8 GTFTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHPY-P--D- 81 (290)
T ss_pred CceecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhcC-C--C-
Confidence 345565 7999999999999975 3664 47788999999999999999999999976 789999999631 2 2
Q ss_pred ceeeeEEeecccCC-------CCCCCCHHHHHHHHHHHHHHcCCCccceeeeecCC----CCCCcHHHHHHHHHHHHHcC
Q 024802 155 EFLDKVRGLTKWVP-------PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWD----YSNPGYLDALNHLTDLKEEG 223 (262)
Q Consensus 155 ~~~~~v~i~tK~~~-------~~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd----~~~~~~~e~~~aL~~l~~~G 223 (262)
+++++||+.. .....+++.+++++++||+|||+||||+|++||++ |......++|++|++|+++|
T Consensus 82 ----~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~G 157 (290)
T PRK10376 82 ----DLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQG 157 (290)
T ss_pred ----eEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 7889999642 12356899999999999999999999999998852 11223788999999999999
Q ss_pred CccEEEecCcCHHHHHHHHHcCCCEEEEeecccccccc
Q 024802 224 KIKTVALTNFDTERLRIILENGIPVVSNQVWHSNGWFV 261 (262)
Q Consensus 224 ~ir~IGvSn~~~~~l~~~~~~g~~~~~~Q~~ys~~~r~ 261 (262)
|||+||||||++++++++.+. .+++++|++||+++|.
T Consensus 158 kir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~~~~~~~ 194 (290)
T PRK10376 158 LVRHIGLSNVTPTQVAEARKI-AEIVCVQNHYNLAHRA 194 (290)
T ss_pred ceeEEEecCCCHHHHHHHHhh-CCeEEEecccCCCcCC
Confidence 999999999999999998875 4789999999999873
No 14
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=6.5e-35 Score=260.72 Aligned_cols=161 Identities=29% Similarity=0.438 Sum_probs=135.5
Q ss_pred ceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCC--CChhHHHHHHHhhccccCCCceeeeEEeeccc---C
Q 024802 93 RVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHY--GPAEDLYGIFINRVRRERPPEFLDKVRGLTKW---V 167 (262)
Q Consensus 93 ~lGlGt~~~~~~~~~~~~~~~~~~l~~A~d~Gi~~fDTA~~Y--G~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~---~ 167 (262)
+||||||++++. ..+++++.++++.|++.|||+||||+.| |.+|+++|++|++.+..|. +++|+||+ .
T Consensus 1 ~l~lG~~~~~~~--~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~-----~~~i~tK~~~~~ 73 (283)
T PF00248_consen 1 PLGLGTWRLGGE--RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRD-----DIFISTKVYGDG 73 (283)
T ss_dssp SBEEECTTBTTT--TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGG-----GSEEEEEEESSS
T ss_pred CEEEEccccCCC--CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccc-----cccccccccccc
Confidence 589999999753 6789999999999999999999999999 7899999999998332222 78888887 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHc-CC
Q 024802 168 PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GI 246 (262)
Q Consensus 168 ~~~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~-g~ 246 (262)
......+++.+++++++||++||+||||+|++|||+...+...++|++|++++++|+||+||||||++++++++.+. .+
T Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 153 (283)
T PF00248_consen 74 KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSI 153 (283)
T ss_dssp STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS
T ss_pred cccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccc
Confidence 22346799999999999999999999999999999987766889999999999999999999999999999999655 47
Q ss_pred CEEEEeeccccccc
Q 024802 247 PVVSNQVWHSNGWF 260 (262)
Q Consensus 247 ~~~~~Q~~ys~~~r 260 (262)
+|+++|++||++++
T Consensus 154 ~~~~~q~~~n~~~~ 167 (283)
T PF00248_consen 154 PPDVVQINYNLLNR 167 (283)
T ss_dssp -ESEEEEE-BTTBH
T ss_pred cccccccccccccc
Confidence 89999999999843
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=6.7e-34 Score=245.16 Aligned_cols=173 Identities=22% Similarity=0.355 Sum_probs=152.9
Q ss_pred eeecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCC--hhHHHHHHHhhccccCCCceee
Q 024802 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFLD 158 (262)
Q Consensus 81 ~~~lG~tG~~Vs~lGlGt~~~~~~~~~~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~--sE~~lG~al~~~~r~r~~~~~~ 158 (262)
+..+|+.|+++|++.+|+|++. .|+ ..+++....++.+++.||++||-|+.||. +|+++|.+|+-.| .+++
T Consensus 3 rI~l~~~~~e~Sriv~G~wRl~-d~~-~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p-----~lRe 75 (298)
T COG4989 3 RITLAPDGLEFSRIVLGYWRLN-DWN-MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAP-----GLRE 75 (298)
T ss_pred eEEecCCCccHHHHHHHHHhhh-hcc-CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcCh-----hhhh
Confidence 4568889999999999999996 343 45578999999999999999999999986 8999999998765 3455
Q ss_pred eEEeecccCC----------CCCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEE
Q 024802 159 KVRGLTKWVP----------PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV 228 (262)
Q Consensus 159 ~v~i~tK~~~----------~~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~I 228 (262)
++.+.||.+. ..++.+.++|..++|+||+||++||+|+++||+||+-.+ .+|+.+++..|++.||||++
T Consensus 76 kieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd-~eeVAeAf~~L~~sGKVr~f 154 (298)
T COG4989 76 KIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMD-AEEVAEAFTHLHKSGKVRHF 154 (298)
T ss_pred heEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCC-HHHHHHHHHHHHhcCCeeee
Confidence 8888888642 245789999999999999999999999999999999877 89999999999999999999
Q ss_pred EecCcCHHHHHHHHHc-CCCEEEEeecccccccc
Q 024802 229 ALTNFDTERLRIILEN-GIPVVSNQVWHSNGWFV 261 (262)
Q Consensus 229 GvSn~~~~~l~~~~~~-g~~~~~~Q~~ys~~~r~ 261 (262)
|||||++.|++.+.++ ..++++||+|.||++..
T Consensus 155 GVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~ 188 (298)
T COG4989 155 GVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTP 188 (298)
T ss_pred ecCCCCHHHHHHHHHhccchhhhcceeecccccc
Confidence 9999999999998876 56799999999999864
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=99.97 E-value=6.6e-31 Score=237.42 Aligned_cols=172 Identities=19% Similarity=0.153 Sum_probs=147.6
Q ss_pred eeeecCCCccccCceeeccccCCCCC-CCCCHHHHHHHHHHHHHcCCCEEecCCCC--CChhHHHHHHHhhccccCCCce
Q 024802 80 ITVSNGNDSLEICRVLNGMWQTSGGW-GRIDRDDAVDAMLRYADAGLTTFDMADHY--GPAEDLYGIFINRVRRERPPEF 156 (262)
Q Consensus 80 ~~~~lG~tG~~Vs~lGlGt~~~~~~~-~~~~~~~~~~~l~~A~d~Gi~~fDTA~~Y--G~sE~~lG~al~~~~r~r~~~~ 156 (262)
.+|++|++|.++|.+|||||++...| +..+.+.+.+.++.|++.|||+||||..| |.||..+|++|++..|+
T Consensus 2 lyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Re----- 76 (391)
T COG1453 2 LYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYRE----- 76 (391)
T ss_pred chhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccc-----
Confidence 58999999999999999999998644 45788999999999999999999999999 99999999999875543
Q ss_pred eeeEEeecccCCCCCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCC-CcHH--HHHHHHHHHHHcCCccEEEecCc
Q 024802 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-PGYL--DALNHLTDLKEEGKIKTVALTNF 233 (262)
Q Consensus 157 ~~~v~i~tK~~~~~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~-~~~~--e~~~aL~~l~~~G~ir~IGvSn~ 233 (262)
+++++||...+ .--+++++++-++++|++||+||+|+|+||..+.+. +..+ ..++.+++++++|+||++|+|.|
T Consensus 77 --kv~LaTKlp~~-~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GFSfH 153 (391)
T COG1453 77 --KVKLATKLPSW-PVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGFSFH 153 (391)
T ss_pred --eEEEEeecCCc-cccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEeeecCC
Confidence 89999998543 245889999999999999999999999999976521 1011 27999999999999999999999
Q ss_pred C-HHHHHHHHHcCCCEEEEeeccccccc
Q 024802 234 D-TERLRIILENGIPVVSNQVWHSNGWF 260 (262)
Q Consensus 234 ~-~~~l~~~~~~g~~~~~~Q~~ys~~~r 260 (262)
+ .+.+.+++.. .+++++|++||..+.
T Consensus 154 gs~e~~~~iv~a-~~~dfvqlq~ny~d~ 180 (391)
T COG1453 154 GSTEVFKEIVDA-YPWDFVQLQYNYIDQ 180 (391)
T ss_pred CCHHHHHHHHhc-CCcceEEeeeeeecc
Confidence 6 4667777765 689999999998763
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=99.97 E-value=2.8e-30 Score=224.48 Aligned_cols=171 Identities=22% Similarity=0.283 Sum_probs=147.7
Q ss_pred eeeecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCC--hhHHHHHHHhhccccCCCcee
Q 024802 80 ITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFL 157 (262)
Q Consensus 80 ~~~~lG~tG~~Vs~lGlGt~~~~~~~~~~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~--sE~~lG~al~~~~r~r~~~~~ 157 (262)
-+|.+|+||++||++|||...++..|++.+.++....+..|+.+|||+|||++-||. +|+.+|.++++.||+
T Consensus 23 eyR~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~------ 96 (342)
T KOG1576|consen 23 EYRQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPRE------ 96 (342)
T ss_pred HHhhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChh------
Confidence 488999999999999999999988888888888888888899999999999999986 899999999998887
Q ss_pred eeEEeecccCC------CCCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCC---CCcHHHHHHHHHHHHHcCCccEE
Q 024802 158 DKVRGLTKWVP------PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---NPGYLDALNHLTDLKEEGKIKTV 228 (262)
Q Consensus 158 ~~v~i~tK~~~------~~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~---~~~~~e~~~aL~~l~~~G~ir~I 228 (262)
..+|+||+.- +-.+++.+.+++++++||+||++||+|++|+|..+.. .+.+.|++.+|+++|++||+|+|
T Consensus 97 -aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~Rfi 175 (342)
T KOG1576|consen 97 -AYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFI 175 (342)
T ss_pred -heeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEe
Confidence 7889999742 2267899999999999999999999999999997643 23367899999999999999999
Q ss_pred EecCcCHHHHHHHHHcCC-CEEEEe--ecccc
Q 024802 229 ALTNFDTERLRIILENGI-PVVSNQ--VWHSN 257 (262)
Q Consensus 229 GvSn~~~~~l~~~~~~g~-~~~~~Q--~~ys~ 257 (262)
|||.|..+-+.++.+++. .++++- ..|++
T Consensus 176 Gitgypldvl~~~ae~~~G~~dvvlsY~ry~l 207 (342)
T KOG1576|consen 176 GITGYPLDVLTECAERGKGRLDVVLSYCRYTL 207 (342)
T ss_pred eecccchHHHHHHHhcCCCceeeehhhhhhcc
Confidence 999999999999988642 344443 55544
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.44 E-value=0.00017 Score=62.93 Aligned_cols=48 Identities=29% Similarity=0.389 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHc-CCCEEEEeeccc
Q 024802 209 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVWHS 256 (262)
Q Consensus 209 ~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~-g~~~~~~Q~~ys 256 (262)
+.+.|+.||+++.+|+|..||||.|++.+|+++... .++|.++|++..
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~ 203 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLG 203 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeecc
Confidence 456999999999999999999999999999999986 689999999875
No 19
>PRK00208 thiG thiazole synthase; Reviewed
Probab=84.77 E-value=28 Score=30.93 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=62.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHcC
Q 024802 169 PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 245 (262)
Q Consensus 169 ~~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g 245 (262)
.....+.++..+..+-..+-++++.|-|=.+..+....++..+++++.++|+++|.+ -+-+|+-++...+++.+.|
T Consensus 69 TaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~-vlpyc~~d~~~ak~l~~~G 144 (250)
T PRK00208 69 TAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV-VLPYCTDDPVLAKRLEEAG 144 (250)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHcC
Confidence 345678888888788888889999999988888877788899999999999999997 3668888888888877654
No 20
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=84.08 E-value=2.5 Score=40.96 Aligned_cols=157 Identities=18% Similarity=0.194 Sum_probs=94.8
Q ss_pred cCcCceeeeecCC------CccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEe--cCCCC----------C
Q 024802 74 TSDKQSITVSNGN------DSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFD--MADHY----------G 135 (262)
Q Consensus 74 ~~~~~~~~~~lG~------tG~~Vs~lGlGt~~~~~~~~~~~~~~~~~~l~~A~d~Gi~~fD--TA~~Y----------G 135 (262)
+++.+++-...|+ |-..-|++-+-...+-+.|. + -+-++...+.|+..+- ||-.| |
T Consensus 66 l~~deTLlvqSGkPvgvF~th~~APRVliaNs~lVp~wa--~----~e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqG 139 (545)
T TIGR01228 66 LENDETLLVQSGKPVGVFKTHENAPRVLIANSNLVPHWA--D----WEHFHELEAKGLMMYGQMTAGSWIYIGTQGILQG 139 (545)
T ss_pred cCCCceEEEEcCCceeeccCCCCCCeEEEEcCccccCCC--C----HHHHHHHHHcccccccCccccceEEEcCcceeec
Confidence 4555666666663 33334444433222222332 2 2345666778887653 55443 3
Q ss_pred ChhHHHHHHHhhccccCCCceeeeEEeecccCCCCC----------------CCCHHHHHHHHHHHHHHcCCCccceeee
Q 024802 136 PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPV----------------KMTSSIVRESIDVSRRRMDVPCLDMLQF 199 (262)
Q Consensus 136 ~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~----------------~~s~~~i~~al~~SL~rLg~d~iDL~~l 199 (262)
.-|.++.-+-+..+. .+.-+++++.-...-.. ..++..| -+|+.+.|+|.+
T Consensus 140 TyeT~~~aark~f~~----~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri-------~kR~~~gyld~~-- 206 (545)
T TIGR01228 140 TYETFAELARQHFGG----SLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVEVDESRI-------DKRLETKYCDEQ-- 206 (545)
T ss_pred HHHHHHHHHHHhcCC----CCceeEEEEeCCCccccccHHHHHHcCceEEEEEECHHHH-------HHHHhcCcceeE--
Confidence 357665444333322 34456676665532110 1233333 368888888876
Q ss_pred ecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHcCCCEE--EEeecc
Q 024802 200 HWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV--SNQVWH 255 (262)
Q Consensus 200 H~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g~~~~--~~Q~~y 255 (262)
.++++++++..++.+++|+...||+-.--++.++++.++++.|+ +-|...
T Consensus 207 ------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSa 258 (545)
T TIGR01228 207 ------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSA 258 (545)
T ss_pred ------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCcc
Confidence 23489999999999999999999999988999999999886555 455554
No 21
>PRK05414 urocanate hydratase; Provisional
Probab=83.59 E-value=2.8 Score=40.82 Aligned_cols=158 Identities=16% Similarity=0.189 Sum_probs=97.4
Q ss_pred ccCcCceeeeecCC------CccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEe--cCCCC----------
Q 024802 73 ATSDKQSITVSNGN------DSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFD--MADHY---------- 134 (262)
Q Consensus 73 ~~~~~~~~~~~lG~------tG~~Vs~lGlGt~~~~~~~~~~~~~~~~~~l~~A~d~Gi~~fD--TA~~Y---------- 134 (262)
.+++.+++-...|+ |-..-|++-+--..+-+.|. + -+-++...+.|+..+- ||-.|
T Consensus 74 ~l~~deTLlvqSGkPvglf~th~~APRVliaN~~lVp~wa--~----~e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvq 147 (556)
T PRK05414 74 ELEDDETLLVQSGKPVGVFKTHPDAPRVLIANSNLVPHWA--N----WEHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQ 147 (556)
T ss_pred hcCCCceEEEEcCCceeeccCCCCCCeEEEEcCccccCCC--C----HHHHHHHHHcccccccCccccceeEEcCceeee
Confidence 35566777777774 33444544443222222332 2 2345666778887653 55443
Q ss_pred CChhHHHHHHHhhccccCCCceeeeEEeecccCCCCC----------------CCCHHHHHHHHHHHHHHcCCCccceee
Q 024802 135 GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPV----------------KMTSSIVRESIDVSRRRMDVPCLDMLQ 198 (262)
Q Consensus 135 G~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~----------------~~s~~~i~~al~~SL~rLg~d~iDL~~ 198 (262)
|.-|.++.-+-+... . .+.-+++++.-...-.. ..++..| -+|+.+.|+|.+
T Consensus 148 GTyeT~~~a~rk~f~-g---~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri-------~kR~~~gyld~~- 215 (556)
T PRK05414 148 GTYETFAEAARQHFG-G---DLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAVEVDESRI-------DKRLRTGYLDEK- 215 (556)
T ss_pred cHHHHHHHHHHHhcC-C---CCceeEEEEecCCccccccHHHHHhcCceEEEEEECHHHH-------HHHHhCCcceeE-
Confidence 335776544433332 1 34556777765542110 1233333 368888898876
Q ss_pred eecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHcCCCEE--EEeecc
Q 024802 199 FHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV--SNQVWH 255 (262)
Q Consensus 199 lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g~~~~--~~Q~~y 255 (262)
..+++++++..++.+++|+...||+-.--++.++++.++++.|+ +-|...
T Consensus 216 -------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSa 267 (556)
T PRK05414 216 -------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSA 267 (556)
T ss_pred -------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCccc
Confidence 23489999999999999999999999988999999999886554 556554
No 22
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=83.20 E-value=33 Score=30.48 Aligned_cols=76 Identities=12% Similarity=0.053 Sum_probs=62.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHcC
Q 024802 169 PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 245 (262)
Q Consensus 169 ~~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g 245 (262)
....++.++..+..+-..+-+++++|-|=.+..+....++..+++++.++|+++|.+ -+-+++-++...+++.+.|
T Consensus 69 TaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~-vlpyc~dd~~~ar~l~~~G 144 (248)
T cd04728 69 TAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFT-VLPYCTDDPVLAKRLEDAG 144 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHcC
Confidence 345678888777788888888999999988888877778899999999999999997 3667888888888877654
No 23
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=79.05 E-value=3.8 Score=39.36 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=48.8
Q ss_pred HHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHcCCCEEEE
Q 024802 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 251 (262)
Q Consensus 187 ~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g~~~~~~ 251 (262)
.||.+.|+|.. .+.++|+++..++..++|+-.+||+-.--++.+.+++++++.|+++
T Consensus 205 ~Rl~t~y~d~~--------a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 205 KRLRTGYLDEI--------AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred HHHhcchhhhh--------cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 58888898864 3348899999999999999999999998899999999988776654
No 24
>PRK13796 GTPase YqeH; Provisional
Probab=76.93 E-value=52 Score=30.68 Aligned_cols=138 Identities=14% Similarity=0.137 Sum_probs=85.1
Q ss_pred CceeeccccCCCCCC-----CCCHHHHHHHHHHHHHcC---CCEEecCCCCCChhHHHHHHHhhccccCCCceeeeEEee
Q 024802 92 CRVLNGMWQTSGGWG-----RIDRDDAVDAMLRYADAG---LTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGL 163 (262)
Q Consensus 92 s~lGlGt~~~~~~~~-----~~~~~~~~~~l~~A~d~G---i~~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~ 163 (262)
..+|--|.++- .|+ ..++++..++++...+.- +-.+|..+.-+.-...+.+... ... -+.+.
T Consensus 34 ~~~C~RC~~l~-hy~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~----~kp-----viLVi 103 (365)
T PRK13796 34 EVYCQRCFRLK-HYNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG----NNP-----VLLVG 103 (365)
T ss_pred CeEchhhhhhh-ccCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhC----CCC-----EEEEE
Confidence 45666666553 233 245666777777766555 3457766544432222333321 211 46788
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHH
Q 024802 164 TKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 241 (262)
Q Consensus 164 tK~~~~~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~ 241 (262)
+|..-.+.....+.+++.++...+.+|....|++.+..-.. ..+++.++.+.+..+.+.+--||.+|..-+.|--.
T Consensus 104 NK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g--~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~ 179 (365)
T PRK13796 104 NKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKG--HGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINR 179 (365)
T ss_pred EchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCC--CCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHH
Confidence 99754332345566777777777778866557777654332 23788888888887788899999999987765443
No 25
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=75.73 E-value=5.1 Score=39.04 Aligned_cols=158 Identities=18% Similarity=0.255 Sum_probs=82.9
Q ss_pred ccCcCceeeeecCC------CccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEe--cCCCC---CC-----
Q 024802 73 ATSDKQSITVSNGN------DSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFD--MADHY---GP----- 136 (262)
Q Consensus 73 ~~~~~~~~~~~lG~------tG~~Vs~lGlGt~~~~~~~~~~~~~~~~~~l~~A~d~Gi~~fD--TA~~Y---G~----- 136 (262)
.+++.+++-...|+ |-..-|++-+-.-.+-+.| ..-+-++...+.|++.+- ||-.| |.
T Consensus 64 ~l~~deTLvvqSG~Pvglf~th~~APRVliaN~~lVp~w------a~~e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvq 137 (546)
T PF01175_consen 64 ELEDDETLVVQSGKPVGLFPTHPDAPRVLIANSNLVPNW------ATWEHFERLEALGLTMYGQMTAGSWIYIGPQGIVQ 137 (546)
T ss_dssp H--TTEEEEEETTEEEEEEE--TTS-SEEEEESEB-GGG------GSHHHHHHHHHTT---B-TTTTTTT---TTHHHHH
T ss_pred hcCCcceEEEEcCCceeeccCCCCCCeEEEEcCcccCCC------CCHHHHHHHHhccchhhccccccceEEEcccceee
Confidence 35556777777773 2233344333221111122 123456777788998764 55444 33
Q ss_pred --hhHHHHHHHhhccccCCCceeeeEEeecccCCCC----------------CCCCHHHHHHHHHHHHHHcCCCccceee
Q 024802 137 --AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPP----------------VKMTSSIVRESIDVSRRRMDVPCLDMLQ 198 (262)
Q Consensus 137 --sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~----------------~~~s~~~i~~al~~SL~rLg~d~iDL~~ 198 (262)
-|.++.-+-+... . .+.-++++++-...-. ...+++.++ +|+.+.|+|.+-
T Consensus 138 GTyeT~~~aark~~g-~---~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~vEvd~~ri~-------kR~~~g~ld~~~ 206 (546)
T PF01175_consen 138 GTYETFLNAARKHFG-G---DLAGKLFLTAGLGGMGGAQPLAATMAGGVGLIVEVDPSRIE-------KRLEQGYLDEVT 206 (546)
T ss_dssp HHHHHHHHHHHHHST-T---S-TT-EEEEE--STTCCHHHHHHHHTT-EEEEEES-HHHHH-------HHHHTTSSSEEE
T ss_pred hhhHHHHHHHHHhcC-C---CCcceEEEEecccccccchHHHHHhcCceEEEEEECHHHHH-------HHHhCCCeeEEc
Confidence 4555433322232 2 4455677776654311 123334333 577788988862
Q ss_pred eecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHcCCC--EEEEeecc
Q 024802 199 FHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP--VVSNQVWH 255 (262)
Q Consensus 199 lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g~~--~~~~Q~~y 255 (262)
++++++++..++.+++|+...||+-.--++.++++.++++. +.+-|...
T Consensus 207 --------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS~ 257 (546)
T PF01175_consen 207 --------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTSA 257 (546)
T ss_dssp --------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SST
T ss_pred --------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCcc
Confidence 34899999999999999999999999888999999988754 55667665
No 26
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=75.41 E-value=12 Score=33.14 Aligned_cols=74 Identities=12% Similarity=0.055 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHcC
Q 024802 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 245 (262)
Q Consensus 171 ~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g 245 (262)
...+.++..+..+-..+-+++++|-|=.+..+....|+..+++++-+.|+++|-+- +--++-++-..+++.+.|
T Consensus 71 Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~akrL~d~G 144 (247)
T PF05690_consen 71 GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEDAG 144 (247)
T ss_dssp T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE-EEEE-S-HHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHHCC
Confidence 45688888888888889999999888877776666688899999999999999864 444555555556666543
No 27
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=72.97 E-value=15 Score=31.50 Aligned_cols=66 Identities=14% Similarity=0.240 Sum_probs=42.7
Q ss_pred HHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEec-CcCHHHHHHHHHcCCCEEEEeecc
Q 024802 186 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVWH 255 (262)
Q Consensus 186 L~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvS-n~~~~~l~~~~~~g~~~~~~Q~~y 255 (262)
...+|.|++-+.+... .+..-+.+ ....+.+.. .+.++.+||. |-+++.+.++.+. .+++++|+.-
T Consensus 17 ~~~~GaD~iGfIf~~~-SpR~V~~~-~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~-~~~d~vQLHG 83 (207)
T PRK13958 17 ASQLPIDAIGFIHYEK-SKRHQTIT-QIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSN-TSINTIQLHG 83 (207)
T ss_pred HHHcCCCEEEEecCCC-CcccCCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-CCCCEEEECC
Confidence 4569999999874332 22222133 333333332 3568899996 7888999888865 5788999864
No 28
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=69.30 E-value=35 Score=29.60 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcC-CccEEEecCcCHHHHHHHHHcCCC
Q 024802 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIP 247 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G-~ir~IGvSn~~~~~l~~~~~~g~~ 247 (262)
.++.+...+-++ .|.++|+++|++-..-.+... |...+.++.++++++.+ .++...++.-..+.++.+.+.|++
T Consensus 15 ~~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~ 89 (265)
T cd03174 15 TFSTEDKLEIAE-ALDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVD 89 (265)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcC
Confidence 356666655554 477899999998765443221 32355788888999988 677767777667788888876643
No 29
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=65.89 E-value=28 Score=30.79 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=56.7
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHH
Q 024802 170 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE 243 (262)
Q Consensus 170 ~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~ 243 (262)
...++.++-.+..+-..+-+++++|-|=.+-.++.-.|+..+++++-|.|+++|-+- .--++-++--.+++.+
T Consensus 77 aGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~V-lPY~~dD~v~arrLee 149 (262)
T COG2022 77 AGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVV-LPYTTDDPVLARRLEE 149 (262)
T ss_pred cccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEE-eeccCCCHHHHHHHHh
Confidence 446788888888888899999999999888888877888999999999999999864 3334444444455554
No 30
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=65.45 E-value=48 Score=31.62 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceeeee-cCCC----------CCCcHH---HHHHHH-HHHHHcCCccEEEecCcCH
Q 024802 173 MTSSIVRESIDVSRRRMDVPCLDMLQFH-WWDY----------SNPGYL---DALNHL-TDLKEEGKIKTVALTNFDT 235 (262)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~d~iDL~~lH-~pd~----------~~~~~~---e~~~aL-~~l~~~G~ir~IGvSn~~~ 235 (262)
.+.+.+.+.++..+ .|+.|+|.+|.+- -|.. ..|+.+ +.++.. +.|.+.|. +.+|+|||.-
T Consensus 201 QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 201 QTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 46677777777665 4678999999553 3311 123222 233333 56777788 8999999976
No 31
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=63.50 E-value=43 Score=31.74 Aligned_cols=80 Identities=8% Similarity=-0.044 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCCEEecCCCCCChhHHHHHHHhhccccCCCceeeeEEeecccCCCCCCCCHHHHHHHHHHHHHHcCC
Q 024802 112 DAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV 191 (262)
Q Consensus 112 ~~~~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~s~~~i~~al~~SL~rLg~ 191 (262)
....++++|++.|++++|||..+-.- .-+.+..++.+ .......-+.|. .+--....+.++.-. .+
T Consensus 80 ~~~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Ag--------it~v~~~G~dPG---i~nv~a~~a~~~~~~--~i 145 (389)
T COG1748 80 VDLTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAG--------ITAVLGCGFDPG---ITNVLAAYAAKELFD--EI 145 (389)
T ss_pred hhHHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcC--------eEEEcccCcCcc---hHHHHHHHHHHHhhc--cc
Confidence 45689999999999999999765442 11222222211 011112223332 222222333332222 58
Q ss_pred CccceeeeecCCCC
Q 024802 192 PCLDMLQFHWWDYS 205 (262)
Q Consensus 192 d~iDL~~lH~pd~~ 205 (262)
+++|+|..+-|++.
T Consensus 146 ~si~iy~g~~g~~~ 159 (389)
T COG1748 146 ESIDIYVGGLGEHG 159 (389)
T ss_pred cEEEEEEecCCCCC
Confidence 99999999988765
No 32
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=61.35 E-value=27 Score=29.94 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=41.1
Q ss_pred HHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEec-CcCHHHHHHHHHcCCCEEEEeecc
Q 024802 186 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVWH 255 (262)
Q Consensus 186 L~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvS-n~~~~~l~~~~~~g~~~~~~Q~~y 255 (262)
+..+|.|++-+.+... .+..-+. +..+.+.+.. .+.++.|||. |-+++.+.++.+. ..++++|+.-
T Consensus 19 ~~~~Gad~iGfI~~~~-S~R~V~~-~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~-~~~d~vQLHg 85 (210)
T PRK01222 19 AAELGADAIGFVFYPK-SPRYVSP-EQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVET-VPLDLLQLHG 85 (210)
T ss_pred HHHcCCCEEEEccCCC-CCCcCCH-HHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-cCCCEEEECC
Confidence 3468999998874321 2222212 3333333322 3568899997 5688888888765 5788999864
No 33
>PLN02363 phosphoribosylanthranilate isomerase
Probab=60.27 E-value=32 Score=30.59 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEec-CcCHHHHHHHHHcCCCEEEEe
Q 024802 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 252 (262)
Q Consensus 174 s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvS-n~~~~~l~~~~~~g~~~~~~Q 252 (262)
++++++.+. ++|.|++-+.+... .+..-. .+..+.+.+......++.|||- |-+++.+.++.+. .+++++|
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~-SpR~Vs-~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~-~~ld~VQ 127 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPK-SKRSIS-LSVAKEISQVAREGGAKPVGVFVDDDANTILRAADS-SDLELVQ 127 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCC-CCCcCC-HHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHh-cCCCEEE
Confidence 455555443 58999999874332 222221 2344444443333246779995 7888888888765 5788999
Q ss_pred ecc
Q 024802 253 VWH 255 (262)
Q Consensus 253 ~~y 255 (262)
+.-
T Consensus 128 LHG 130 (256)
T PLN02363 128 LHG 130 (256)
T ss_pred ECC
Confidence 864
No 34
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=59.92 E-value=1.3e+02 Score=26.79 Aligned_cols=23 Identities=13% Similarity=0.346 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEecC
Q 024802 109 DRDDAVDAMLRYADAGLTTFDMA 131 (262)
Q Consensus 109 ~~~~~~~~l~~A~d~Gi~~fDTA 131 (262)
+.++..++++...+.||..++..
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG 42 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELT 42 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEE
Confidence 44888999999999999999985
No 35
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=59.48 E-value=1.3e+02 Score=27.24 Aligned_cols=81 Identities=12% Similarity=0.033 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceeeeecCCCC-CCcHHHHHHHHHHHHHc--CCccEE-------EecCcCHHHHHHH
Q 024802 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEE--GKIKTV-------ALTNFDTERLRII 241 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~-~~~~~e~~~aL~~l~~~--G~ir~I-------GvSn~~~~~l~~~ 241 (262)
..+++.+.+++.+.+++.+.|.||+=.=+ +... ....+...++|.+|+++ ++.-.+ |+.......++.+
T Consensus 86 ~~~~~~~~~a~~~~i~~y~~dgiDfDiE~-~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~p~gl~~~g~~~l~~a 164 (294)
T cd06543 86 CTSADQLAAAYQKVIDAYGLTHLDFDIEG-GALTDTAAIDRRAQALALLQKEYPDLKISFTLPVLPTGLTPDGLNVLEAA 164 (294)
T ss_pred cccHHHHHHHHHHHHHHhCCCeEEEeccC-CccccchhHHHHHHHHHHHHHHCCCcEEEEecCCCCCCCChhHHHHHHHH
Confidence 45888999999999999999999995433 2221 12245677888888877 332222 2222223455666
Q ss_pred HHcCCCEEEEee
Q 024802 242 LENGIPVVSNQV 253 (262)
Q Consensus 242 ~~~g~~~~~~Q~ 253 (262)
.+.|+.++.+.+
T Consensus 165 ~~~Gv~~d~VNi 176 (294)
T cd06543 165 AANGVDLDTVNI 176 (294)
T ss_pred HHcCCCcceeee
Confidence 666877665443
No 36
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=58.88 E-value=44 Score=29.46 Aligned_cols=114 Identities=13% Similarity=0.118 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCChhHHHHHHHhhccccCCCceeeeEEeecccC--------------C---CC
Q 024802 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWV--------------P---PP 170 (262)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~--------------~---~~ 170 (262)
.+.++-.++.+.+-+.||.||=|.... +-+ ++|.+..-+ -++|++--- | ..
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~----~s~-d~l~~~~~~-------~~KIaS~dl~n~~lL~~~A~tgkPvIlST 120 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDE----ESV-DFLEELGVP-------AYKIASGDLTNLPLLEYIAKTGKPVILST 120 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SH----HHH-HHHHHHT-S-------EEEE-GGGTT-HHHHHHHHTT-S-EEEE-
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCH----HHH-HHHHHcCCC-------EEEeccccccCHHHHHHHHHhCCcEEEEC
Confidence 467889999999999999999776532 111 222222111 233332100 0 01
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCC-CCcHHHHHHHHHHHHHcCCccEEEecCcCHHH
Q 024802 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTER 237 (262)
Q Consensus 171 ~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~-~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~ 237 (262)
+-.+.++|+++++...++-+ -|+.++|....- .+.-+--+..|..|++.=- --||.|.|+...
T Consensus 121 G~stl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~ 184 (241)
T PF03102_consen 121 GMSTLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGI 184 (241)
T ss_dssp TT--HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSS
T ss_pred CCCCHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCc
Confidence 23466788888877755544 689999985421 1211223455555553323 468999998653
No 37
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=56.93 E-value=48 Score=29.94 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHcCCCEE
Q 024802 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV 249 (262)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g~~~~ 249 (262)
++.+... .+-+.|.++|+++|++-.++.|.. .|...+.++.+..+.+...++...+. -+...++.+.+.|++..
T Consensus 23 ~s~e~k~-~ia~~L~~~Gv~~IEvgsf~~p~~-~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~~~v 96 (287)
T PRK05692 23 IPTADKI-ALIDRLSAAGLSYIEVASFVSPKW-VPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGADEV 96 (287)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEeCCCcCccc-ccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCCCEE
Confidence 4444433 456668999999999985555531 22233446666666655556666665 47888999888765543
No 38
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=54.99 E-value=1.3e+02 Score=25.60 Aligned_cols=108 Identities=12% Similarity=0.072 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCChhHHHHHHHhhccccCCCceeeeEEeecccCCCCCCCCHHHHHHHHHHHHH
Q 024802 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRR 187 (262)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~s~~~i~~al~~SL~ 187 (262)
.+.+++.++++.+++.|++.|.-...-.+..+.+.+.-++++.+ ..+...|- .+.++++.+++
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~------~~iGaGTV-------~~~~~~~~a~~---- 81 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDR------ALIGAGTV-------LSPEQVDRLAD---- 81 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCC------cEEeEEec-------CCHHHHHHHHH----
Confidence 36789999999999999999987644334454455444333311 12333343 24555555443
Q ss_pred HcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHcCCC
Q 024802 188 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (262)
Q Consensus 188 rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g~~ 247 (262)
.|.+ ++|.|..+. +.. +...+.|.. ++.+.++++++.++.+.|..
T Consensus 82 -aGA~-----fivsp~~~~----~v~---~~~~~~~~~--~~~G~~t~~E~~~A~~~Gad 126 (206)
T PRK09140 82 -AGGR-----LIVTPNTDP----EVI---RRAVALGMV--VMPGVATPTEAFAALRAGAQ 126 (206)
T ss_pred -cCCC-----EEECCCCCH----HHH---HHHHHCCCc--EEcccCCHHHHHHHHHcCCC
Confidence 4443 456664321 222 344466664 44446677777777765543
No 39
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=53.96 E-value=1.8e+02 Score=26.62 Aligned_cols=134 Identities=14% Similarity=0.082 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHHc-CCCEEecCCCCCC----hhHHHHHHHhhccccCCCceeeeEEeecccCCCCCCCCHHHHHHHH
Q 024802 108 IDRDDAVDAMLRYADA-GLTTFDMADHYGP----AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESI 182 (262)
Q Consensus 108 ~~~~~~~~~l~~A~d~-Gi~~fDTA~~YG~----sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~s~~~i~~al 182 (262)
.+.++..++++...+. ||+-+--+- |+ +..-+.+.++....- ..+..+.+.|+.... .+..+.+.+
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i---~~v~~iri~Tr~~v~----~p~rit~el 189 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAI---DHVKIVRFHTRVPVA----DPARVTPAL 189 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhC---CCccEEEEeCCCccc----ChhhcCHHH
Confidence 3556777777776644 887553221 22 122234444433211 112235566764211 233333444
Q ss_pred HHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEE------EecCcCHHHHHHHHH----cCCCEE-EE
Q 024802 183 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV------ALTNFDTERLRIILE----NGIPVV-SN 251 (262)
Q Consensus 183 ~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~I------GvSn~~~~~l~~~~~----~g~~~~-~~ 251 (262)
-+.|++.|.. ..+.+|...+... .++++++++.+++.|..-.+ |+ |.+.+.+.++.+ .|+.+- +.
T Consensus 190 l~~L~~~g~~--v~i~l~~~h~~el-~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~~l~~~gv~pyyl~ 265 (321)
T TIGR03822 190 IAALKTSGKT--VYVALHANHAREL-TAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMRAFVECRIKPYYLH 265 (321)
T ss_pred HHHHHHcCCc--EEEEecCCChhhc-CHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHHHHHhcCCeeEEEE
Confidence 4566666632 3467777554333 57899999999999963211 33 567777766553 465433 44
Q ss_pred eec
Q 024802 252 QVW 254 (262)
Q Consensus 252 Q~~ 254 (262)
|+.
T Consensus 266 ~~~ 268 (321)
T TIGR03822 266 HLD 268 (321)
T ss_pred ecC
Confidence 443
No 40
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=53.91 E-value=67 Score=27.23 Aligned_cols=71 Identities=15% Similarity=0.306 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCH----HHHHHHHHcCCCEEEE
Q 024802 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT----ERLRIILENGIPVVSN 251 (262)
Q Consensus 176 ~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~----~~l~~~~~~g~~~~~~ 251 (262)
..+.+.+++.++.+|.+. +++ .+... +.++..+.++++.++| +..|=++..++ +.++++.+.|+|+..+
T Consensus 14 ~~~~~g~~~~a~~~g~~~-~~~----~~~~~-d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYEV-EIV----FDAQN-DPEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHHHTCEE-EEE----EESTT-THHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHcCCEE-EEe----CCCCC-CHHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEEE
Confidence 457888999999999643 332 22222 2577889999999888 88888886654 5677777778887665
Q ss_pred ee
Q 024802 252 QV 253 (262)
Q Consensus 252 Q~ 253 (262)
-.
T Consensus 87 d~ 88 (257)
T PF13407_consen 87 DS 88 (257)
T ss_dssp SS
T ss_pred ec
Confidence 33
No 41
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=53.79 E-value=2e+02 Score=27.62 Aligned_cols=62 Identities=11% Similarity=0.162 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceeeeec-CCC---------C--CC-cHHH---H-HHHHHHHHHcCCccEEEecCcC
Q 024802 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDY---------S--NP-GYLD---A-LNHLTDLKEEGKIKTVALTNFD 234 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d~iDL~~lH~-pd~---------~--~~-~~~e---~-~~aL~~l~~~G~ir~IGvSn~~ 234 (262)
..+.+.+++.++..+ +++.++|++|.+.- |+. . .+ +.++ . -.+.+.|.+.|.. .+++|||.
T Consensus 226 gqT~e~~~~~l~~~~-~l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~-~yeis~fa 303 (449)
T PRK09058 226 GQTPEIWQQDLAIVR-DLGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWR-QLSNSHWA 303 (449)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCe-EEeeeeee
Confidence 348888888887765 48999999997763 221 0 11 1222 2 2344677888985 58999996
Q ss_pred H
Q 024802 235 T 235 (262)
Q Consensus 235 ~ 235 (262)
-
T Consensus 304 r 304 (449)
T PRK09058 304 R 304 (449)
T ss_pred c
Confidence 4
No 42
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=52.21 E-value=1.9e+02 Score=26.39 Aligned_cols=135 Identities=11% Similarity=0.111 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEecCCCCCC---hhHHHHHHHhhccccCCCceeeeEEeecccCCCCCCCCHHHHHHHHH
Q 024802 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGP---AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (262)
Q Consensus 107 ~~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~---sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~s~~~i~~al~ 183 (262)
..+.++...+++.+.+.|+..|.-.- |. ... +-+.++..... . . ...+.+.|.- ..+.+ .-
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tG--GEPllr~d-l~~li~~i~~~-~-~-l~~i~itTNG---------~ll~~-~~ 107 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTG--GEPLVRRG-CDQLVARLGKL-P-G-LEELSLTTNG---------SRLAR-FA 107 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC--cCCCcccc-HHHHHHHHHhC-C-C-CceEEEEeCh---------hHHHH-HH
Confidence 35778889999999999998876542 32 111 12223222111 0 1 1134455431 01222 33
Q ss_pred HHHHHcCCCccceeeeecCCCC-------CCcHHHHHHHHHHHHHcCC--c--cEEEecCcCHHHHHHHHHc--CCCEEE
Q 024802 184 VSRRRMDVPCLDMLQFHWWDYS-------NPGYLDALNHLTDLKEEGK--I--KTVALTNFDTERLRIILEN--GIPVVS 250 (262)
Q Consensus 184 ~SL~rLg~d~iDL~~lH~pd~~-------~~~~~e~~~aL~~l~~~G~--i--r~IGvSn~~~~~l~~~~~~--g~~~~~ 250 (262)
+.|...|++++-+ -++.++++ ...++.+++.++.+++.|. + ..+.+...+.+++.++.+. ..++.+
T Consensus 108 ~~L~~aGl~~v~I-SlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~ 186 (329)
T PRK13361 108 AELADAGLKRLNI-SLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDI 186 (329)
T ss_pred HHHHHcCCCeEEE-EeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeE
Confidence 4556667776543 44444332 1237789999999999986 2 3344556777877776541 123333
Q ss_pred Eeeccccc
Q 024802 251 NQVWHSNG 258 (262)
Q Consensus 251 ~Q~~ys~~ 258 (262)
.=++|-|.
T Consensus 187 ~~ie~mP~ 194 (329)
T PRK13361 187 AFIEEMPL 194 (329)
T ss_pred EEEecccC
Confidence 34555554
No 43
>PRK02399 hypothetical protein; Provisional
Probab=50.83 E-value=51 Score=31.45 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=42.5
Q ss_pred HHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEE--------------EecCcCHHHHHHHHHcCCC
Q 024802 182 IDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--------------ALTNFDTERLRIILENGIP 247 (262)
Q Consensus 182 l~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~I--------------GvSn~~~~~l~~~~~~g~~ 247 (262)
++...++|.-...|++.+|--.. -=++||+|.++|.+..+ |+-+..++++..+.+.|+|
T Consensus 201 v~~~~~~Le~~GyEvlVFHATG~-------GGraME~Li~~G~~~gVlDlTttEv~d~l~GGv~sagp~Rl~Aa~~~gIP 273 (406)
T PRK02399 201 VQAAREELEARGYEVLVFHATGT-------GGRAMEKLIDSGLIAGVLDLTTTEVCDELFGGVLAAGPDRLEAAARTGIP 273 (406)
T ss_pred HHHHHHHHHhCCCeEEEEcCCCC-------chHHHHHHHHcCCceEEEEcchHHHHHHHhCcCccCCccHHHHHHHcCCC
Confidence 33444444334369999997432 23578999999999776 6777778888888888887
Q ss_pred E
Q 024802 248 V 248 (262)
Q Consensus 248 ~ 248 (262)
-
T Consensus 274 ~ 274 (406)
T PRK02399 274 Q 274 (406)
T ss_pred E
Confidence 3
No 44
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=50.24 E-value=2.1e+02 Score=26.42 Aligned_cols=24 Identities=8% Similarity=0.147 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecC
Q 024802 108 IDRDDAVDAMLRYADAGLTTFDMA 131 (262)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gi~~fDTA 131 (262)
++.++..++++...+.||..|+..
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 355888999999999999999983
No 45
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.05 E-value=1.6e+02 Score=24.67 Aligned_cols=107 Identities=8% Similarity=0.017 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCChhHHHHHHHhhccccCCCceeeeEEeecccCCCCCCCCHHHHHHHHHHHHH
Q 024802 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRR 187 (262)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~s~~~i~~al~~SL~ 187 (262)
.+.+++.+.++.+++.|++++.-..--...++++..+.+..+. . .....|.+ ..+++..+++
T Consensus 21 ~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~-----~--~~g~gtvl-------~~d~~~~A~~---- 82 (187)
T PRK07455 21 PDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPE-----C--IIGTGTIL-------TLEDLEEAIA---- 82 (187)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCC-----c--EEeEEEEE-------cHHHHHHHHH----
Confidence 3678999999999999999997665444455555544332111 0 12222322 2344444433
Q ss_pred HcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHcCCC
Q 024802 188 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (262)
Q Consensus 188 rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g~~ 247 (262)
+|. -.+|.|.... +.. +-.+..|.-..+| .+++.++.++.+.|..
T Consensus 83 -~gA-----dgv~~p~~~~----~~~---~~~~~~~~~~i~G--~~t~~e~~~A~~~Gad 127 (187)
T PRK07455 83 -AGA-----QFCFTPHVDP----ELI---EAAVAQDIPIIPG--ALTPTEIVTAWQAGAS 127 (187)
T ss_pred -cCC-----CEEECCCCCH----HHH---HHHHHcCCCEEcC--cCCHHHHHHHHHCCCC
Confidence 333 3456664321 122 2233444445577 4678888777765533
No 46
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=48.62 E-value=2e+02 Score=25.63 Aligned_cols=131 Identities=16% Similarity=0.200 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEecC----------CCCCChhHHHHHHHhhccccCCCceeeeEEeecccCCCCCCCCHHHH
Q 024802 109 DRDDAVDAMLRYADAGLTTFDMA----------DHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIV 178 (262)
Q Consensus 109 ~~~~~~~~l~~A~d~Gi~~fDTA----------~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~s~~~i 178 (262)
+.++..++.+.+.+.|+..||.- ..|+...+.+-+.++...+. . ++-+.-|+.+. .+++
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~-----~~Pv~vKl~~~-----~~~~ 168 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-T-----DVPVIVKLTPN-----VTDI 168 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-c-----CCCEEEEeCCC-----chhH
Confidence 45777888888889999999862 23555556666666554322 0 22333444332 1122
Q ss_pred HHHHHHHHHHcCCCccceee------eecCC--C--C-------CC-cHHHHHHHHHHHHHcCCccEEEecCc-CHHHHH
Q 024802 179 RESIDVSRRRMDVPCLDMLQ------FHWWD--Y--S-------NP-GYLDALNHLTDLKEEGKIKTVALTNF-DTERLR 239 (262)
Q Consensus 179 ~~al~~SL~rLg~d~iDL~~------lH~pd--~--~-------~~-~~~e~~~aL~~l~~~G~ir~IGvSn~-~~~~l~ 239 (262)
. .+-+.++..|.|.|++.= +|.-. + . -+ ...-.++.+.++++.=.+--||+-.. +++++.
T Consensus 169 ~-~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~ 247 (296)
T cd04740 169 V-EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDAL 247 (296)
T ss_pred H-HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHH
Confidence 2 233457788988877641 11100 0 0 00 01125677778877666888998886 788999
Q ss_pred HHHHcCCCEEEEee
Q 024802 240 IILENGIPVVSNQV 253 (262)
Q Consensus 240 ~~~~~g~~~~~~Q~ 253 (262)
++++.| .+.+|+
T Consensus 248 ~~l~~G--Ad~V~i 259 (296)
T cd04740 248 EFLMAG--ASAVQV 259 (296)
T ss_pred HHHHcC--CCEEEE
Confidence 988766 344553
No 47
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=48.44 E-value=2.3e+02 Score=26.30 Aligned_cols=76 Identities=12% Similarity=0.046 Sum_probs=60.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHcC
Q 024802 169 PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 245 (262)
Q Consensus 169 ~~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g 245 (262)
....++.++..+..+-..+-.++++|-|=.+.......++..+++++.++|+++|..- .=+|+-++...+++.+.|
T Consensus 143 Tag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v-~~yc~~d~~~a~~l~~~g 218 (326)
T PRK11840 143 TAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQV-MVYCSDDPIAAKRLEDAG 218 (326)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHhcC
Confidence 3456788888777888888889999888877766666677999999999999999964 357777888877777654
No 48
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=47.69 E-value=2.3e+02 Score=26.25 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCC-------------Cc---HHHHHHHH-HHHHHcCCccEEEecCcC
Q 024802 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-------------PG---YLDALNHL-TDLKEEGKIKTVALTNFD 234 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~-------------~~---~~e~~~aL-~~l~~~G~ir~IGvSn~~ 234 (262)
..+.+++++.++..+ +++.+++.+|.+.- .+.+ ++ ..+.++.. +.|.+.|.. .+++|||.
T Consensus 171 gqt~~~~~~tl~~~~-~l~~~~i~~y~l~~-~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~-~ye~s~fa 247 (375)
T PRK05628 171 GESDDDWRASLDAAL-EAGVDHVSAYALIV-EDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFD-WYEVSNWA 247 (375)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeeeeec-CCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCC-eeeecccc
Confidence 347777877777544 58888888887652 2211 11 11233333 456667774 57888886
Q ss_pred H
Q 024802 235 T 235 (262)
Q Consensus 235 ~ 235 (262)
-
T Consensus 248 ~ 248 (375)
T PRK05628 248 R 248 (375)
T ss_pred C
Confidence 4
No 49
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=47.29 E-value=1e+02 Score=27.60 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=45.1
Q ss_pred CCCccceeeeecC----------CCCCCcHHHHHH-HHHHHHHcCCccEEEecCcCHHHHHHHHHcCCCEEEEeeccccc
Q 024802 190 DVPCLDMLQFHWW----------DYSNPGYLDALN-HLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVWHSNG 258 (262)
Q Consensus 190 g~d~iDL~~lH~p----------d~~~~~~~e~~~-aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g~~~~~~Q~~ys~~ 258 (262)
.++.||.+++.-- +.+.|++.+.++ ..+..++.|| .+|+...+++..+++.+.|+.+.+...+...+
T Consensus 166 ~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk--~~G~~~~~~~~a~~~~~~G~~~v~~g~D~~~l 243 (267)
T PRK10128 166 DVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK--AAGFLAVDPDMAQKCLAWGANFVAVGVDTMLY 243 (267)
T ss_pred CCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEEcCCCHHHHHHHHHcCCcEEEEChHHHHH
Confidence 4578888887642 122333444333 3345778888 57887788999999998898888877665443
No 50
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=46.17 E-value=1.8e+02 Score=28.29 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHH----cCCccEEEecC--cCHHHHHHHHHcC
Q 024802 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE----EGKIKTVALTN--FDTERLRIILENG 245 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~----~G~ir~IGvSn--~~~~~l~~~~~~g 245 (262)
.++++.|.+.++. +++.|...+-|.. .-++....++...+.++.+++ .|.++.|+|+- .+.++++++.+.|
T Consensus 114 ~Ls~EEI~~ea~~-~~~~G~~~i~Lvs--Ge~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaG 190 (469)
T PRK09613 114 KLTQEEIREEVKA-LEDMGHKRLALVA--GEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAG 190 (469)
T ss_pred ECCHHHHHHHHHH-HHHCCCCEEEEEe--CCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcC
Confidence 4678999998875 5779988776642 222222236666666666665 57777777753 4788999999888
Q ss_pred CC-EEEEeecccc
Q 024802 246 IP-VVSNQVWHSN 257 (262)
Q Consensus 246 ~~-~~~~Q~~ys~ 257 (262)
+. ..++|=-||+
T Consensus 191 v~~~~l~qETY~~ 203 (469)
T PRK09613 191 IGTYQLFQETYHK 203 (469)
T ss_pred CCEEEeccccCCH
Confidence 64 6777777764
No 51
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=46.12 E-value=2.2e+02 Score=25.46 Aligned_cols=130 Identities=14% Similarity=0.198 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHcC-CCEEec-------C---CCCCChhHHHHHHHhhccccCCCceeeeEEeecccCCCCCCCCHHH
Q 024802 109 DRDDAVDAMLRYADAG-LTTFDM-------A---DHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSI 177 (262)
Q Consensus 109 ~~~~~~~~l~~A~d~G-i~~fDT-------A---~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~s~~~ 177 (262)
+.++..+..+.+.+.| +..||- + ..|+...+++-+.++..... . ++-+.-|..+. .++
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~----~--~~pv~vKl~~~-----~~~ 170 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV----V--KVPVIVKLTPN-----VTD 170 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh----c--CCCEEEEcCCC-----chh
Confidence 4577888888888998 899875 1 12334455566666554321 0 23344454332 122
Q ss_pred HHHHHHHHHHHcCCCccceee-eecC--CCCC--------------Cc-HHHHHHHHHHHHHcCCccEEEecCc-CHHHH
Q 024802 178 VRESIDVSRRRMDVPCLDMLQ-FHWW--DYSN--------------PG-YLDALNHLTDLKEEGKIKTVALTNF-DTERL 238 (262)
Q Consensus 178 i~~al~~SL~rLg~d~iDL~~-lH~p--d~~~--------------~~-~~e~~~aL~~l~~~G~ir~IGvSn~-~~~~l 238 (262)
+. .+-+.|+..|.|.|++.= .+.. +... +. ..-.++.+.++++.=.+--||+... +++++
T Consensus 171 ~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da 249 (301)
T PRK07259 171 IV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDA 249 (301)
T ss_pred HH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 32 234457788988876631 1110 1000 00 0114666677777656888999886 78889
Q ss_pred HHHHHcCCCEEEEe
Q 024802 239 RIILENGIPVVSNQ 252 (262)
Q Consensus 239 ~~~~~~g~~~~~~Q 252 (262)
.+++..| .+.+|
T Consensus 250 ~~~l~aG--Ad~V~ 261 (301)
T PRK07259 250 IEFIMAG--ASAVQ 261 (301)
T ss_pred HHHHHcC--CCcee
Confidence 9888766 34455
No 52
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=44.93 E-value=2.3e+02 Score=25.44 Aligned_cols=75 Identities=15% Similarity=0.033 Sum_probs=52.5
Q ss_pred CCCCCHHHHHHHHHHHHHHc------CCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHH
Q 024802 170 PVKMTSSIVRESIDVSRRRM------DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE 243 (262)
Q Consensus 170 ~~~~s~~~i~~al~~SL~rL------g~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~ 243 (262)
....+.++-.+..+-..+-+ ++++|-|=.+..+....|+..|++++-+.|+++|-+- .--++-++--.+++.+
T Consensus 78 aGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~a~rLed 156 (267)
T CHL00162 78 AGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTV-LPYINADPMLAKHLED 156 (267)
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHH
Confidence 34566666655555556655 6778877777777777788899999999999999864 4445555555566665
Q ss_pred cC
Q 024802 244 NG 245 (262)
Q Consensus 244 ~g 245 (262)
.|
T Consensus 157 ~G 158 (267)
T CHL00162 157 IG 158 (267)
T ss_pred cC
Confidence 33
No 53
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=44.39 E-value=1.4e+02 Score=24.08 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=43.9
Q ss_pred eeeEEeecccCCCCCCCCHHHHHHHHHHHHHHc--CCCccceeeeecCCCCCCcHHHHHHHHHHHHHc
Q 024802 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRM--DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (262)
Q Consensus 157 ~~~v~i~tK~~~~~~~~s~~~i~~al~~SL~rL--g~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~ 222 (262)
+..+.++-|+.. ...+..|++.+.++.+.. .....|++++..+... .++.+..+.|.++.++
T Consensus 47 RlG~sVSKKvg~---AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~-~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 47 KVGITVSKKFGK---AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ-PDFLKLLQDFLQQIPE 110 (138)
T ss_pred eEEEEEeccccc---chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC-CCHHHHHHHHHHHHHH
Confidence 345566666543 357778888888888765 3457899999998776 5588877777776655
No 54
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=44.00 E-value=2.1e+02 Score=25.03 Aligned_cols=70 Identities=9% Similarity=0.020 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHc-CCccEEEecCcCHHHHHHHHHcCCCEE
Q 024802 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE-GKIKTVALTNFDTERLRIILENGIPVV 249 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~-G~ir~IGvSn~~~~~l~~~~~~g~~~~ 249 (262)
.++.+...+ +-+.|.++|+++|++-+ |... +.-++.++++.+. ..++..+.+..+.+.++.+.+.|++..
T Consensus 16 ~~~~~~k~~-i~~~L~~~Gv~~iE~g~---p~~~----~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i 86 (259)
T cd07939 16 AFSREEKLA-IARALDEAGVDEIEVGI---PAMG----EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAV 86 (259)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEec---CCCC----HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEE
Confidence 345555554 45559999999999952 3211 2235566677664 347778888788889988887766543
No 55
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=43.82 E-value=2e+02 Score=26.84 Aligned_cols=24 Identities=8% Similarity=0.209 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCC
Q 024802 109 DRDDAVDAMLRYADAGLTTFDMAD 132 (262)
Q Consensus 109 ~~~~~~~~l~~A~d~Gi~~fDTA~ 132 (262)
+.++..++++...+.||..|+...
T Consensus 20 s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 20 TVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeC
Confidence 457888888888899999999653
No 56
>PRK15108 biotin synthase; Provisional
Probab=43.80 E-value=2.4e+02 Score=26.05 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC--cCHHHHHHHHHcCCC
Q 024802 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN--FDTERLRIILENGIP 247 (262)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn--~~~~~l~~~~~~g~~ 247 (262)
.+++.|.+..+. ...+|++.+ +....+.++....++...+.++.+++.|. .+-+|+ .+.++++++.+.|+.
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld 148 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRF-CMGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLD 148 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEE-EEEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCC
Confidence 678888887765 457898887 33444333322225666777777777775 344665 578889998887754
No 57
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=42.75 E-value=2.6e+02 Score=25.29 Aligned_cols=135 Identities=9% Similarity=0.113 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEecCCCCCC---hhHHHHHHHhhccccCCCceeeeEEeecccCCCCCCCCHHHHHHHHH
Q 024802 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGP---AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (262)
Q Consensus 107 ~~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~---sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~s~~~i~~al~ 183 (262)
..+.++..++++.+.+.|++.+.-.. |. ... +-+.++..... . . ...+.+.|.-. .+.+. -
T Consensus 48 ~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~-l~~li~~i~~~-~-~-~~~i~itTNG~---------ll~~~-~ 111 (331)
T PRK00164 48 LLSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKD-LEDIIAALAAL-P-G-IRDLALTTNGY---------LLARR-A 111 (331)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccC-HHHHHHHHHhc-C-C-CceEEEEcCch---------hHHHH-H
Confidence 35778899999999999998876542 32 111 22333332111 0 0 11455555421 11222 2
Q ss_pred HHHHHcCCCccceeeeecCCCC-------CCcHHHHHHHHHHHHHcCC----ccEEEecCcCHHHHHHHHHc--CCCEEE
Q 024802 184 VSRRRMDVPCLDMLQFHWWDYS-------NPGYLDALNHLTDLKEEGK----IKTVALTNFDTERLRIILEN--GIPVVS 250 (262)
Q Consensus 184 ~SL~rLg~d~iDL~~lH~pd~~-------~~~~~e~~~aL~~l~~~G~----ir~IGvSn~~~~~l~~~~~~--g~~~~~ 250 (262)
+.|...|++.|- +-+|.+++. ...++++++.++.+++.|. +..+.+-+.+.+++.++.+. ..++.+
T Consensus 112 ~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v 190 (331)
T PRK00164 112 AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQL 190 (331)
T ss_pred HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeE
Confidence 334455655442 233443321 1237889999999999986 33454556677777766541 234455
Q ss_pred Eeeccccc
Q 024802 251 NQVWHSNG 258 (262)
Q Consensus 251 ~Q~~ys~~ 258 (262)
.-++|.|.
T Consensus 191 ~~ie~~p~ 198 (331)
T PRK00164 191 RFIELMPT 198 (331)
T ss_pred EEEEeeEC
Confidence 55666653
No 58
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=42.31 E-value=14 Score=29.26 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=12.3
Q ss_pred cccccccCchhhhchhh
Q 024802 3 AMHCHFTGRNFISKSLS 19 (262)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (262)
.|.|||||+-.+-=++-
T Consensus 31 ~M~Ch~tg~a~~~ig~v 47 (124)
T PF14387_consen 31 HMKCHWTGQAVTGIGAV 47 (124)
T ss_pred eeeehhHHHHHHHHHHH
Confidence 68999999976444433
No 59
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=41.37 E-value=1.2e+02 Score=27.02 Aligned_cols=75 Identities=15% Similarity=0.090 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCC-ccEEEecCcCHHHHHHHHHcCCCEEE
Q 024802 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 250 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~-ir~IGvSn~~~~~l~~~~~~g~~~~~ 250 (262)
.++.+...+ +-+.|.++|++.|++-. |... .+.++..+.+.+.++ .+-.+....+.+.++.+.+.|++..-
T Consensus 18 ~~s~~~k~~-i~~~L~~~Gv~~IEvG~---P~~~----~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (262)
T cd07948 18 FFDTEDKIE-IAKALDAFGVDYIELTS---PAAS----PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVD 89 (262)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEEC---CCCC----HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEE
Confidence 345555544 44458999998888873 4332 233444455554443 34455667788889999887766443
Q ss_pred Eeec
Q 024802 251 NQVW 254 (262)
Q Consensus 251 ~Q~~ 254 (262)
.-+.
T Consensus 90 i~~~ 93 (262)
T cd07948 90 LVFG 93 (262)
T ss_pred EEEe
Confidence 3333
No 60
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=41.27 E-value=90 Score=26.94 Aligned_cols=63 Identities=11% Similarity=0.050 Sum_probs=40.0
Q ss_pred HHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCC-ccEEEec-CcCHHHHHHHHHcCCCEEEEeecc
Q 024802 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALT-NFDTERLRIILENGIPVVSNQVWH 255 (262)
Q Consensus 187 ~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~-ir~IGvS-n~~~~~l~~~~~~g~~~~~~Q~~y 255 (262)
..+|.||+-+.+.-. .+..-+.+ . ..++.+.-. ++.+||. |.+.+++.++.+. .+++.+|+.-
T Consensus 19 ~~~gad~iG~If~~~-SpR~Vs~~-~---a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~-~~ld~VQlHG 83 (208)
T COG0135 19 AKAGADYIGFIFVPK-SPRYVSPE-Q---AREIASAVPKVKVVGVFVNESIEEILEIAEE-LGLDAVQLHG 83 (208)
T ss_pred HHcCCCEEEEEEcCC-CCCcCCHH-H---HHHHHHhCCCCCEEEEECCCCHHHHHHHHHh-cCCCEEEECC
Confidence 468999888775441 33332122 2 244444443 8899997 4577788888765 6788999864
No 61
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=40.63 E-value=1.2e+02 Score=28.57 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=45.7
Q ss_pred cCCCCCChhHHHHHHHhhccccCCCceeeeEEeecccCC--------CCCCCCH----HHHHHHHHHHHHHcCCCcccee
Q 024802 130 MADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVP--------PPVKMTS----SIVRESIDVSRRRMDVPCLDML 197 (262)
Q Consensus 130 TA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~--------~~~~~s~----~~i~~al~~SL~rLg~d~iDL~ 197 (262)
++.-+...+..|.+.+++.+++ -.++.||... .+..+++ +.|++.+.+.|++-|+....+|
T Consensus 122 ~s~rf~~ndv~La~~i~~~gK~-------fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VF 194 (376)
T PF05049_consen 122 SSERFTENDVQLAKEIQRMGKK-------FYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVF 194 (376)
T ss_dssp ESSS--HHHHHHHHHHHHTT-E-------EEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EE
T ss_pred eCCCCchhhHHHHHHHHHcCCc-------EEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceE
Confidence 4445555677778888765443 4677888642 2224454 4577778888998999999999
Q ss_pred eeecCCCCCCcHHHHHHHHH
Q 024802 198 QFHWWDYSNPGYLDALNHLT 217 (262)
Q Consensus 198 ~lH~pd~~~~~~~e~~~aL~ 217 (262)
++-..++..-++....++|+
T Consensus 195 LVS~~dl~~yDFp~L~~tL~ 214 (376)
T PF05049_consen 195 LVSSFDLSKYDFPKLEETLE 214 (376)
T ss_dssp EB-TTTTTSTTHHHHHHHHH
T ss_pred EEeCCCcccCChHHHHHHHH
Confidence 99988776545544444443
No 62
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=40.29 E-value=3.2e+02 Score=25.65 Aligned_cols=136 Identities=12% Similarity=0.072 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHHcCCC-EEecCCCCCChhHHHHHHHhhccc---cCCCceeeeEEeecccCC--CCCCCCHHHHHHH
Q 024802 108 IDRDDAVDAMLRYADAGLT-TFDMADHYGPAEDLYGIFINRVRR---ERPPEFLDKVRGLTKWVP--PPVKMTSSIVRES 181 (262)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gi~-~fDTA~~YG~sE~~lG~al~~~~r---~r~~~~~~~v~i~tK~~~--~~~~~s~~~i~~a 181 (262)
.+.+......+.+...|++ +++|.-. ...+. +-+.++.... +.......-+.+-..+.. ....+.++.+++-
T Consensus 74 ~~~e~~~~~~~~~~~~GvTt~l~t~~t-~~~~~-~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~~~Gah~~~~i~~p 151 (380)
T TIGR00221 74 ASFETLEIMSERLPKSGCTSFLPTLIT-QPDEN-IKQAVKNMREYLAKEKNAQALGLHLEGPFLSPEKKGAHPPEYIREP 151 (380)
T ss_pred CCHHHHHHHHHHHHhcCeeEEeeeccC-CCHHH-HHHHHHHHHHHHhccCCceeeeEeeecCcCChhhcCCCCHHHhhCc
Confidence 3557777788888899998 6676632 22233 3444443211 100000111111111111 1123455555432
Q ss_pred HHHHHHHcC---CCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHcCCCEEEE
Q 024802 182 IDVSRRRMD---VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 251 (262)
Q Consensus 182 l~~SL~rLg---~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g~~~~~~ 251 (262)
=.+-+++|- -+.+-++-+ -|+.+ ...+.++.|+++|.+-++|=||-+.+++.++.+.|..-.+.
T Consensus 152 ~~~~~~~~~~~~~~~i~~vTl---APE~~---~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~~~TH 218 (380)
T TIGR00221 152 DVELFKKFLCEAGGVITKVTL---APEED---QHFELIRHLKDAGIIVSAGHTNATYELAKAAFKAGATHATH 218 (380)
T ss_pred CHHHHHHHHHhcCCCEEEEEE---CCCCC---ChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHcCCCeeee
Confidence 222222221 122333322 23333 35667799999999999999999999999999877654443
No 63
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=39.61 E-value=2.4e+02 Score=24.04 Aligned_cols=120 Identities=8% Similarity=0.094 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecC-CCCCC-hhHHHHHHHhhccccCCCceeeeEEeecccCCCCCCCCHHHHHHHHHHH
Q 024802 108 IDRDDAVDAMLRYADAGLTTFDMA-DHYGP-AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVS 185 (262)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gi~~fDTA-~~YG~-sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~s~~~i~~al~~S 185 (262)
.+.++..++++...+.||..|+.. +..+. ..+.+.+..+..+.. .+..... ...+.++.+++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~~-------~~~~~i~~~~~~~ 76 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNA-------RLQALCR-------ANEEDIERAVEAA 76 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSS-------EEEEEEE-------SCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhccc-------ccceeee-------ehHHHHHHHHHhh
Confidence 567888999999899999999999 33332 222334333322211 1111111 2455566656533
Q ss_pred HHHcCCCccceeeeecCC-----CCC---CcHHHHHHHHHHHHHcCCccEEEecC---cCHHHHHHHH
Q 024802 186 RRRMDVPCLDMLQFHWWD-----YSN---PGYLDALNHLTDLKEEGKIKTVALTN---FDTERLRIIL 242 (262)
Q Consensus 186 L~rLg~d~iDL~~lH~pd-----~~~---~~~~e~~~aL~~l~~~G~ir~IGvSn---~~~~~l~~~~ 242 (262)
...|.+.+.++.-=++- ... ...+...+.++.+++.|.-..++.-. ++++.+.++.
T Consensus 77 -~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~ 143 (237)
T PF00682_consen 77 -KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELA 143 (237)
T ss_dssp -HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHH
T ss_pred -HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHH
Confidence 45677766665322110 000 01334555666677777777777633 3455554443
No 64
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=39.25 E-value=2.4e+02 Score=24.30 Aligned_cols=71 Identities=15% Similarity=0.169 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCC----hh--HHHHHHHhhccccCCCceeeeEEeecccCCCCCCCCHHHHHHH
Q 024802 108 IDRDDAVDAMLRYADAGLTTFDMADHYGP----AE--DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES 181 (262)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~----sE--~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~s~~~i~~a 181 (262)
.++++...+.+.+.+.|..|+=|+.-|+. -| +++.+.++ ++. .++.+. . -.+.++..+-
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~~v-----~IKaaG----G--irt~~~a~~~ 193 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----DTI-----GVKASG----G--VRTAEDAIAM 193 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----cCC-----eEEEeC----C--CCCHHHHHHH
Confidence 35577788999999999999999988852 12 22333332 111 333332 1 1267888888
Q ss_pred HHHHHHHcCCCc
Q 024802 182 IDVSRRRMDVPC 193 (262)
Q Consensus 182 l~~SL~rLg~d~ 193 (262)
++.--.|+|+++
T Consensus 194 i~aGa~riGts~ 205 (211)
T TIGR00126 194 IEAGASRIGASA 205 (211)
T ss_pred HHHhhHHhCcch
Confidence 888888999875
No 65
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=39.12 E-value=3e+02 Score=24.96 Aligned_cols=119 Identities=10% Similarity=0.152 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCC---hhHHHHHHHhhccccCCCceeeeEEeecccCCCCCCCCHHHHHHHHHH
Q 024802 108 IDRDDAVDAMLRYADAGLTTFDMADHYGP---AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 184 (262)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~---sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~s~~~i~~al~~ 184 (262)
.+.++..++++.+.+.|+..+.-.. |. ... +-+.++...... .+ ..+.+.|.-. . +.+ .-+
T Consensus 43 ls~eei~~~i~~~~~~gv~~V~ltG--GEPll~~~-l~~li~~i~~~~--gi-~~v~itTNG~-----l----l~~-~~~ 106 (334)
T TIGR02666 43 LTFEEIERLVRAFVGLGVRKVRLTG--GEPLLRKD-LVELVARLAALP--GI-EDIALTTNGL-----L----LAR-HAK 106 (334)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--ccccccCC-HHHHHHHHHhcC--CC-CeEEEEeCch-----h----HHH-HHH
Confidence 5678899999999999998776542 32 111 122222221110 11 1455555311 0 111 234
Q ss_pred HHHHcCCCccceeeeecCCCC--------CCcHHHHHHHHHHHHHcCCc--c--EEEecCcCHHHHHHHHH
Q 024802 185 SRRRMDVPCLDMLQFHWWDYS--------NPGYLDALNHLTDLKEEGKI--K--TVALTNFDTERLRIILE 243 (262)
Q Consensus 185 SL~rLg~d~iDL~~lH~pd~~--------~~~~~e~~~aL~~l~~~G~i--r--~IGvSn~~~~~l~~~~~ 243 (262)
.|.+.|+++|- +-++.+++. ...++++++.++.+++.|.- + .+-+.+.+.+++.++.+
T Consensus 107 ~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~ 176 (334)
T TIGR02666 107 DLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAE 176 (334)
T ss_pred HHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHH
Confidence 46666765443 223433321 12478899999999999863 2 23345677777776654
No 66
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=38.95 E-value=2.3e+02 Score=23.55 Aligned_cols=105 Identities=12% Similarity=0.092 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCChhHHHHHHHhhccccCCCceeeeEEeecccCCCCCCCCHHHHHHHHHHHHHH
Q 024802 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 188 (262)
Q Consensus 109 ~~~~~~~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~s~~~i~~al~~SL~r 188 (262)
+.++..+.++.+++.|++.+.....-.+..+.+.+.-+.++ + + .+...+- .+++++..++ .
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~-~----~--~iGag~v-------~~~~~~~~a~-----~ 74 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFP-E----A--LIGAGTV-------LTPEQADAAI-----A 74 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCC-C----C--EEEEEeC-------CCHHHHHHHH-----H
Confidence 67889999999999999999877665555554444433222 0 0 1122221 2445554443 3
Q ss_pred cCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHcCC
Q 024802 189 MDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGI 246 (262)
Q Consensus 189 Lg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g~ 246 (262)
+|.+++ |.|..+ .+.. +..++.|.-.-+|++ +.+++.++.+.|.
T Consensus 75 ~Ga~~i-----~~p~~~----~~~~---~~~~~~~~~~i~gv~--t~~e~~~A~~~Ga 118 (190)
T cd00452 75 AGAQFI-----VSPGLD----PEVV---KAANRAGIPLLPGVA--TPTEIMQALELGA 118 (190)
T ss_pred cCCCEE-----EcCCCC----HHHH---HHHHHcCCcEECCcC--CHHHHHHHHHCCC
Confidence 666654 665432 2333 333344555567888 5677777776553
No 67
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=38.71 E-value=27 Score=25.61 Aligned_cols=68 Identities=9% Similarity=-0.008 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHc-CCCEEEEe
Q 024802 178 VRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQ 252 (262)
Q Consensus 178 i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~-g~~~~~~Q 252 (262)
+-+.-+.....||.+..|+..|..-.|+.. .+.+.+.|...++.- | .+.+.+.|.++++. ++.+++.|
T Consensus 12 LG~~W~~Lar~Lgls~~~I~~i~~~~p~~l-~eQv~~mL~~W~~r~-----G-~~ATv~~L~~aL~~~~~~~~~~~ 80 (83)
T cd08319 12 LGPEWEQVLLDLGLSQTDIYRCKENHPHNV-QSQIVEALVKWRQRF-----G-KKATVQSLIQSLKAVEVDPSVLQ 80 (83)
T ss_pred HhhhHHHHHHHcCCCHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhc-----C-CCCcHHHHHHHHHHcCCCHHHHH
Confidence 334456777899999999998877545433 467888888888753 2 35677888887764 66665544
No 68
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=37.94 E-value=3.1e+02 Score=25.00 Aligned_cols=84 Identities=11% Similarity=0.196 Sum_probs=52.7
Q ss_pred eEEeecccCCCCCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHH--
Q 024802 159 KVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTE-- 236 (262)
Q Consensus 159 ~v~i~tK~~~~~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~-- 236 (262)
++.+..|....+ =...+.+.+++..+.+|. ++.+ ..|. ..+..+..+.++.+..+| +..|-++..++.
T Consensus 25 ~i~~v~k~~~~p---f~~~~~~Gi~~aa~~~G~---~v~~-~~~~--~~d~~~q~~~i~~li~~~-vdgIiv~~~d~~al 94 (336)
T PRK15408 25 RIAFIPKLVGVG---FFTSGGNGAKEAGKELGV---DVTY-DGPT--EPSVSGQVQLINNFVNQG-YNAIIVSAVSPDGL 94 (336)
T ss_pred EEEEEECCCCCH---HHHHHHHHHHHHHHHhCC---EEEE-ECCC--CCCHHHHHHHHHHHHHcC-CCEEEEecCCHHHH
Confidence 444455543321 124577888888899984 5543 2332 222456678889999876 788888876644
Q ss_pred --HHHHHHHcCCCEEEEe
Q 024802 237 --RLRIILENGIPVVSNQ 252 (262)
Q Consensus 237 --~l~~~~~~g~~~~~~Q 252 (262)
.++++.+.|+|+.++-
T Consensus 95 ~~~l~~a~~~gIpVV~~d 112 (336)
T PRK15408 95 CPALKRAMQRGVKVLTWD 112 (336)
T ss_pred HHHHHHHHHCCCeEEEeC
Confidence 4555666677766553
No 69
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=37.52 E-value=1.9e+02 Score=22.36 Aligned_cols=63 Identities=13% Similarity=0.043 Sum_probs=41.6
Q ss_pred eeEEeecccCCCCCCCCHHHHHHHHHHHHHHcC--CCccceeeeecCCCCCCcHHHHHHHHHHHHHc
Q 024802 158 DKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (262)
Q Consensus 158 ~~v~i~tK~~~~~~~~s~~~i~~al~~SL~rLg--~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~ 222 (262)
..+.++-|.... ...+..+++.+.+..+... ++..|++++..+.....++.+..+.|.+|.+.
T Consensus 46 ~G~~VsKK~~~~--AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 46 LGLVVGKKTAKR--AVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred EEEEEecccCcc--hhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 345556664432 3467778888888876443 23579999999876666577777777666554
No 70
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=37.14 E-value=3.5e+02 Score=25.16 Aligned_cols=62 Identities=10% Similarity=0.044 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceeeeec-CCC-----------CCCcHH---HH-HHHHHHHHHcCCccEEEecCcCH
Q 024802 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDY-----------SNPGYL---DA-LNHLTDLKEEGKIKTVALTNFDT 235 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d~iDL~~lH~-pd~-----------~~~~~~---e~-~~aL~~l~~~G~ir~IGvSn~~~ 235 (262)
..+.+.+++.++..+ .|+.++|.+|.+.- |.. ..++.+ +. ..+.+.|.+.|.. .+++|||.-
T Consensus 166 gqt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa~ 243 (370)
T PRK06294 166 TQSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFT-RYELASYAK 243 (370)
T ss_pred CCCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCC-eeeeeeeeC
Confidence 358888888888766 48999999987763 221 012111 12 2345678888985 589999964
No 71
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=36.83 E-value=3.9e+02 Score=25.62 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceeee-ecCCC----------CCCcHHHH----HHHHHHHHHcCCccEEEecCcCH
Q 024802 173 MTSSIVRESIDVSRRRMDVPCLDMLQF-HWWDY----------SNPGYLDA----LNHLTDLKEEGKIKTVALTNFDT 235 (262)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~d~iDL~~l-H~pd~----------~~~~~~e~----~~aL~~l~~~G~ir~IGvSn~~~ 235 (262)
.+.+.+.+.++..+ +|+.+++.+|.+ |.|.. ..++.++. ..+.+.|.+.|.. .+|++||.-
T Consensus 216 qt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~-~~~~~~far 291 (453)
T PRK13347 216 QTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYV-PIGLDHFAL 291 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCE-EEeccceeC
Confidence 48888888887766 689999999855 33321 11222232 2355778889985 599999964
No 72
>PF06174 DUF987: Protein of unknown function (DUF987); InterPro: IPR009329 This is a family of bacterial proteins that are related to the hypothetical protein YeeT.
Probab=36.61 E-value=13 Score=25.64 Aligned_cols=9 Identities=56% Similarity=1.357 Sum_probs=8.0
Q ss_pred cccccCchh
Q 024802 5 HCHFTGRNF 13 (262)
Q Consensus 5 ~~~~~~~~~ 13 (262)
-||||||.+
T Consensus 35 ~~hYtg~~V 43 (66)
T PF06174_consen 35 VCHYTGRDV 43 (66)
T ss_pred cccccCccc
Confidence 499999987
No 73
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=35.92 E-value=2.4e+02 Score=22.89 Aligned_cols=80 Identities=10% Similarity=-0.027 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCc-cEEEecCcCHHHHHHHHHc-CCCEEE
Q 024802 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILEN-GIPVVS 250 (262)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~i-r~IGvSn~~~~~l~~~~~~-g~~~~~ 250 (262)
+.--.+++.|.+-|+..|-+.+|+=- |..++ .++-+.-..+.+.+.+|.. +.|-+|....-.-..+.+. |+.-..
T Consensus 7 haG~~lK~~l~~~L~~~g~eV~D~G~-~~~~~--~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaANK~~GIraa~ 83 (144)
T TIGR00689 7 HAGLELKSEIIEHLKQKGHEVIDCGT-LYDER--VDYPDYAKLVADKVVAGEVSLGILICGTGIGMSIAANKFKGIRAAL 83 (144)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEcCC-CCCCC--CChHHHHHHHHHHHHcCCCceEEEEcCCcHHHHHHHhcCCCeEEEE
Confidence 44567899999999999998888853 22222 2367788888899999998 7788888776665555553 444444
Q ss_pred Eeecc
Q 024802 251 NQVWH 255 (262)
Q Consensus 251 ~Q~~y 255 (262)
+.-+|
T Consensus 84 ~~d~~ 88 (144)
T TIGR00689 84 CVDEY 88 (144)
T ss_pred ECCHH
Confidence 44443
No 74
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=35.79 E-value=2.4e+02 Score=22.84 Aligned_cols=78 Identities=8% Similarity=0.053 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCc-cEEEecCcCHHHHHHHHHc-CCCEE
Q 024802 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILEN-GIPVV 249 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~i-r~IGvSn~~~~~l~~~~~~-g~~~~ 249 (262)
++.--.+++.+.+-|+..|-+.+|+= +++ .++-+.-..+.+.+.+|.. +.|-+|....-.-..+.+. |+.-.
T Consensus 8 DhaG~~lK~~l~~~L~~~g~eV~D~G----~~~--~dypd~a~~va~~V~~~e~~~GIliCGtGiG~siaANKv~GIRaA 81 (141)
T PRK12613 8 DAHGNALKELIKSFLQEEGYDIIDVT----DIN--SDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGPFMVATKLKGMVAA 81 (141)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEEcC----CCC--CChHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhhcCCCeEEE
Confidence 34556789999999999999888874 222 2366777888888888988 7888888776554444443 44444
Q ss_pred EEeecc
Q 024802 250 SNQVWH 255 (262)
Q Consensus 250 ~~Q~~y 255 (262)
.+.-+|
T Consensus 82 ~~~d~~ 87 (141)
T PRK12613 82 EVSDER 87 (141)
T ss_pred EECCHH
Confidence 444333
No 75
>PRK06256 biotin synthase; Validated
Probab=35.74 E-value=3.4e+02 Score=24.61 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEE-ecCCCCCChh---HHHHHHHhhccccCCCceeeeEEeecccCCCCCCCCHHHHHHHHH
Q 024802 108 IDRDDAVDAMLRYADAGLTTF-DMADHYGPAE---DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (262)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gi~~f-DTA~~YG~sE---~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~s~~~i~~al~ 183 (262)
.+.++..+.++.+.+.|++-| -.+..++... +.+-+.++...+. . .+.+..... ..+++.+
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~-~-----~i~~~~~~g----~l~~e~l----- 155 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEE-T-----DLEICACLG----LLTEEQA----- 155 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhc-C-----CCcEEecCC----cCCHHHH-----
Confidence 467889999999999998633 2233333321 1234445443221 1 111221111 1344433
Q ss_pred HHHHHcCCCccceeeeec-------CCCCCCcHHHHHHHHHHHHHcCCccE----EEecCcCHHHHHHHHH
Q 024802 184 VSRRRMDVPCLDMLQFHW-------WDYSNPGYLDALNHLTDLKEEGKIKT----VALTNFDTERLRIILE 243 (262)
Q Consensus 184 ~SL~rLg~d~iDL~~lH~-------pd~~~~~~~e~~~aL~~l~~~G~ir~----IGvSn~~~~~l~~~~~ 243 (262)
+-|++.|++.+-+- +.. ..+. ..+++.+++++.+++.|.--. +|+ +.+.+++.+...
T Consensus 156 ~~LkeaG~~~v~~~-lEts~~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~ 223 (336)
T PRK06256 156 ERLKEAGVDRYNHN-LETSRSYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAF 223 (336)
T ss_pred HHHHHhCCCEEecC-CccCHHHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHH
Confidence 34667787654331 111 1111 237889999999999996322 344 556666655443
No 76
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=35.42 E-value=3.7e+02 Score=24.96 Aligned_cols=123 Identities=16% Similarity=0.208 Sum_probs=64.1
Q ss_pred HHHHHHHcCCCEEecCCCCCChhHHHHHHHhhccccCCCceeeeEEeecc-cCCCCCCCCHHHHHHHHHHHH--HHcCCC
Q 024802 116 AMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTK-WVPPPVKMTSSIVRESIDVSR--RRMDVP 192 (262)
Q Consensus 116 ~l~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK-~~~~~~~~s~~~i~~al~~SL--~rLg~d 192 (262)
.|..--..|+.||||- |..... =+-|+..+.. .+|..++.--+ ...+.......++.+.++-.- +.+|..
T Consensus 47 ~l~~lE~~Gvkf~d~n---g~~qD~-~~iLK~~GvN---yvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmK 119 (403)
T COG3867 47 SLIELENSGVKFFDTN---GVRQDA-LQILKNHGVN---YVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMK 119 (403)
T ss_pred HHHHHHHcCceEEccC---ChHHHH-HHHHHHcCcC---eEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcE
Confidence 3344447899999976 443433 3456665544 45555554332 112222334445666555433 466654
Q ss_pred ccceeeeec----CCCCCCcHHHHHHHH--HHHHHcCCccEEEecCcCHHHHHHHHHcCCCEEEEeec
Q 024802 193 CLDMLQFHW----WDYSNPGYLDALNHL--TDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVW 254 (262)
Q Consensus 193 ~iDL~~lH~----pd~~~~~~~e~~~aL--~~l~~~G~ir~IGvSn~~~~~l~~~~~~g~~~~~~Q~~ 254 (262)
- |+=+|. .||.....-..|+.| +++++. |=.|+...+..+.+.|+.|+.+|+-
T Consensus 120 V--l~dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~a-------vy~yTk~~l~~m~~eGi~pdmVQVG 178 (403)
T COG3867 120 V--LLDFHYSDFWADPAKQKKPKAWENLNFEQLKKA-------VYSYTKYVLTTMKKEGILPDMVQVG 178 (403)
T ss_pred E--EeeccchhhccChhhcCCcHHhhhcCHHHHHHH-------HHHHHHHHHHHHHHcCCCccceEec
Confidence 2 223343 344322122456554 333332 2345666677777778888888873
No 77
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=35.25 E-value=2.1e+02 Score=24.46 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHH----cCCCE
Q 024802 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGIPV 248 (262)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~----~g~~~ 248 (262)
++.+...+ +-+.|.++|+++|++- +|..... ..+.++.+.+.... .+-.+++......++...+ .|.+.
T Consensus 11 ~~~~~k~~-i~~~L~~~Gv~~iEvg---~~~~~~~-~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 11 FSTEEKLE-IAKALDEAGVDYIEVG---FPFASED-DFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp --HHHHHH-HHHHHHHHTTSEEEEE---HCTSSHH-HHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred cCHHHHHH-HHHHHHHhCCCEEEEc---ccccCHH-HHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCE
Confidence 45555444 4456999999999998 3322222 34455666666666 5556677777777777554 46665
Q ss_pred EEEeecccc
Q 024802 249 VSNQVWHSN 257 (262)
Q Consensus 249 ~~~Q~~ys~ 257 (262)
.-+-+..|.
T Consensus 84 i~i~~~~s~ 92 (237)
T PF00682_consen 84 IRIFISVSD 92 (237)
T ss_dssp EEEEEETSH
T ss_pred EEecCcccH
Confidence 555555555
No 78
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=35.22 E-value=2.1e+02 Score=22.15 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=44.1
Q ss_pred eeEEeecccCCCCCCCCHHHHHHHHHHHHHHcCC---CccceeeeecCCCCCCcHHHHHHHHHHHHHc
Q 024802 158 DKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (262)
Q Consensus 158 ~~v~i~tK~~~~~~~~s~~~i~~al~~SL~rLg~---d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~ 222 (262)
..+.++-|.... ...+..+++.+.+..+.+.. ...|++++-.+.....++.+..+.|..+.+.
T Consensus 49 ~G~~VsKK~~~~--AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 49 FGISISQKVSKK--AVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred EEEEEecccccc--hhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 345555554432 34677888888888876532 3579999999887766688888888777655
No 79
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=35.22 E-value=40 Score=23.56 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=9.9
Q ss_pred hhh--hHHhHHHHHHH
Q 024802 17 SLS--TFLPLLSIVQT 30 (262)
Q Consensus 17 ~~~--~~~~~~~~~~~ 30 (262)
++| .||+.|++...
T Consensus 8 ~~sRR~Flk~lg~~aa 23 (66)
T TIGR02811 8 DPSRRDLLKGLGVGAA 23 (66)
T ss_pred CccHHHHHHHHHHHHH
Confidence 445 89999887443
No 80
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=34.73 E-value=1.1e+02 Score=29.54 Aligned_cols=65 Identities=9% Similarity=0.032 Sum_probs=40.0
Q ss_pred HHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEec-CcCHHHHHHHHHcCCCEEEEeeccc
Q 024802 186 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVWHS 256 (262)
Q Consensus 186 L~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvS-n~~~~~l~~~~~~g~~~~~~Q~~ys 256 (262)
...+|.|++-+.+... .+..-+.+ ....+.+... ++.|||- |-+++.+.++.+. .+++++|+.-+
T Consensus 273 a~~~GaD~lGfIf~~~-SpR~V~~~-~a~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~-~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEK-SPRYVSLE-QAQEIIAAAP---LRYVGVFRNADIEDIVDIAKQ-LSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCC-CCCCCCHH-HHHHHHHhCC---CCEEEEEeCCCHHHHHHHHHH-cCCCEEEeCCC
Confidence 3467888888864321 22222123 3333333222 8899997 7788888887765 57889998753
No 81
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=34.08 E-value=1.3e+02 Score=30.27 Aligned_cols=75 Identities=9% Similarity=0.000 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEec-CcCHHHHHHHHHcCCCEEEEe
Q 024802 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 252 (262)
Q Consensus 174 s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvS-n~~~~~l~~~~~~g~~~~~~Q 252 (262)
+.++++.+ ..+|.|++-+.+... .+..-+.+.....+.+......++.|||- |-+++.+.++.+. .+++++|
T Consensus 12 ~~eda~~a-----~~~gaD~iGfIf~~~-SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~-~~ld~vQ 84 (610)
T PRK13803 12 DSALISKA-----VDMLPDFIGFIFYEK-SPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK-NGIDFVQ 84 (610)
T ss_pred cHHHHHHH-----HHcCCCEEEEEecCC-CCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh-cCCCEEE
Confidence 44555544 458999998875442 22222233313333333333357789995 7888899888765 5788889
Q ss_pred ecc
Q 024802 253 VWH 255 (262)
Q Consensus 253 ~~y 255 (262)
+.-
T Consensus 85 LHG 87 (610)
T PRK13803 85 LHG 87 (610)
T ss_pred ECC
Confidence 864
No 82
>TIGR00035 asp_race aspartate racemase.
Probab=33.94 E-value=3e+02 Score=23.53 Aligned_cols=69 Identities=10% Similarity=0.083 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHHcCCCccceeeeecCCCC----------CCc-HHHHHHHHHHHHHcCCccEEEecCcCHHH-HHHH
Q 024802 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS----------NPG-YLDALNHLTDLKEEGKIKTVALTNFDTER-LRII 241 (262)
Q Consensus 174 s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~----------~~~-~~e~~~aL~~l~~~G~ir~IGvSn~~~~~-l~~~ 241 (262)
+-+..++-++.+-.+.+.++++.+.+++|+.. .++ .....+.++.|.+.| +..|-+...++.. ++++
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~~~~l 93 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKFAEDI 93 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHHHHHH
Confidence 44556666667777888899999999987531 111 223556666666654 7899998887765 4444
Q ss_pred HH
Q 024802 242 LE 243 (262)
Q Consensus 242 ~~ 243 (262)
.+
T Consensus 94 ~~ 95 (229)
T TIGR00035 94 QK 95 (229)
T ss_pred HH
Confidence 44
No 83
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.88 E-value=2.7e+02 Score=23.96 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCChhHHHHHHHhhc
Q 024802 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRV 148 (262)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~ 148 (262)
.+.+++.++.+..++.|++.+.-....-+..+.+.+.-+++
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~ 64 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEV 64 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHC
Confidence 36789999999999999999998855444555554443333
No 84
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=33.71 E-value=3.4e+02 Score=24.06 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHc--CCccEEEecCcC
Q 024802 209 YLDALNHLTDLKEE--GKIKTVALTNFD 234 (262)
Q Consensus 209 ~~e~~~aL~~l~~~--G~ir~IGvSn~~ 234 (262)
..++++.++.+++. |.=--+|+||-+
T Consensus 173 ~~~~l~~i~~l~~~~pg~p~l~G~Sn~S 200 (261)
T PRK07535 173 GPEVLETIRRIKELYPKVHTTCGLSNIS 200 (261)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCc
Confidence 45678999999998 888899999975
No 85
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=33.58 E-value=2.1e+02 Score=26.68 Aligned_cols=78 Identities=12% Similarity=0.031 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCC-ccEEEecCcCHHHHHHHHHcCCCEEE
Q 024802 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 250 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~-ir~IGvSn~~~~~l~~~~~~g~~~~~ 250 (262)
.++.++..+ +-+.|.++|+++|++- +|... +.-++.++.+.+.+. .+..+++..+.+.++.+.+.|++...
T Consensus 19 ~~s~~~k~~-ia~~L~~~Gv~~IEvG---~p~~~----~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~ 90 (365)
T TIGR02660 19 AFTAAEKLA-IARALDEAGVDELEVG---IPAMG----EEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVH 90 (365)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEe---CCCCC----HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEE
Confidence 355555444 5556999999999885 44321 233666677776643 77788888888999988877665443
Q ss_pred Eeecccc
Q 024802 251 NQVWHSN 257 (262)
Q Consensus 251 ~Q~~ys~ 257 (262)
.=+.-|+
T Consensus 91 i~~~~Sd 97 (365)
T TIGR02660 91 ISIPVSD 97 (365)
T ss_pred EEEccCH
Confidence 3333343
No 86
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=33.52 E-value=70 Score=25.29 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHc-CC
Q 024802 179 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE-GK 224 (262)
Q Consensus 179 ~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~-G~ 224 (262)
+..+++.|+.+.-..+|.++++..|.-.-+..+....++.+.+. |.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~gv 100 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKGV 100 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcCc
Confidence 44566666666666788888887776544466777777888777 44
No 87
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=33.40 E-value=2.6e+02 Score=22.69 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=49.3
Q ss_pred eEEeec-ccCCCCCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHH---HHcCCccEEEecC--
Q 024802 159 KVRGLT-KWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDL---KEEGKIKTVALTN-- 232 (262)
Q Consensus 159 ~v~i~t-K~~~~~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l---~~~G~ir~IGvSn-- 232 (262)
.+.+.| |........+.+.+.+.++..|+.+|.+...++.-|......|..+-...+++++ .+...+-+||=+.
T Consensus 60 ~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~ 139 (166)
T TIGR01664 60 KIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPIQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGR 139 (166)
T ss_pred EEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCCCC
Confidence 445554 3322222345666777889999999997633333332212233233344445554 2445577888443
Q ss_pred ---cCHHHHHHHHHcCCCE
Q 024802 233 ---FDTERLRIILENGIPV 248 (262)
Q Consensus 233 ---~~~~~l~~~~~~g~~~ 248 (262)
++...++.+.+.|+++
T Consensus 140 ~~~~~~~Di~aA~~aGi~~ 158 (166)
T TIGR01664 140 KLDFSDADIKFAKNLGLEF 158 (166)
T ss_pred CCCCchhHHHHHHHCCCCc
Confidence 2345777777767654
No 88
>PRK10508 hypothetical protein; Provisional
Probab=32.32 E-value=73 Score=29.38 Aligned_cols=42 Identities=10% Similarity=-0.016 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHH
Q 024802 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK 220 (262)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~ 220 (262)
.+|+.+.+.|++..+++|+|.+ +++.+.. + .++.++.++.|.
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del---~~~~~~~--~-~e~~~~S~~lla 327 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI---MVNGQIF--D-HQARLHSFELAM 327 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE---EEECCCC--C-HHHHHHHHHHHH
Confidence 4889999999999999998877 2333322 2 455555555444
No 89
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=32.26 E-value=1e+02 Score=29.43 Aligned_cols=61 Identities=26% Similarity=0.399 Sum_probs=43.4
Q ss_pred HHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEE--------------EecCcCHHHHHHHHHcCCC
Q 024802 182 IDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--------------ALTNFDTERLRIILENGIP 247 (262)
Q Consensus 182 l~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~I--------------GvSn~~~~~l~~~~~~g~~ 247 (262)
++...++|.-.-.|++.+|.-.. -=++||+|+++|.+..+ |+....+++++.+.+.|+|
T Consensus 200 V~~~~~~Le~~G~Ev~VFHAtG~-------GG~aME~Li~~G~~~~VlDlTttEl~d~l~GGv~sagp~Rl~AA~~~GIP 272 (403)
T PF06792_consen 200 VDAIRERLEEEGYEVLVFHATGT-------GGRAMERLIREGQFDGVLDLTTTELADELFGGVLSAGPDRLEAAARAGIP 272 (403)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCC-------chHHHHHHHHcCCcEEEEECcHHHHHHHHhCCCCCCCchHHHHHHHcCCC
Confidence 33444444433479999997432 23578999999999876 7777788888888888887
Q ss_pred EE
Q 024802 248 VV 249 (262)
Q Consensus 248 ~~ 249 (262)
-+
T Consensus 273 ~V 274 (403)
T PF06792_consen 273 QV 274 (403)
T ss_pred EE
Confidence 44
No 90
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=31.83 E-value=1.7e+02 Score=20.83 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=35.3
Q ss_pred HHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcC-CccEEEecCcC-HHHHHHHHHcC
Q 024802 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFD-TERLRIILENG 245 (262)
Q Consensus 187 ~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G-~ir~IGvSn~~-~~~l~~~~~~g 245 (262)
+.++....|++++-...+... ..+.++++++.+ .++-|-+|+.+ .....++.+.|
T Consensus 37 ~~~~~~~~d~iiid~~~~~~~----~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g 93 (112)
T PF00072_consen 37 ELLKKHPPDLIIIDLELPDGD----GLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAG 93 (112)
T ss_dssp HHHHHSTESEEEEESSSSSSB----HHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTT
T ss_pred HHhcccCceEEEEEeeecccc----ccccccccccccccccEEEecCCCCHHHHHHHHHCC
Confidence 333444599999887554433 445556666666 88888888764 45666677655
No 91
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=31.77 E-value=2e+02 Score=24.24 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCC
Q 024802 109 DRDDAVDAMLRYADAGLTTFDMADHYG 135 (262)
Q Consensus 109 ~~~~~~~~l~~A~d~Gi~~fDTA~~YG 135 (262)
++++...+.+.+.+.|..|+=|+.-|.
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~ 155 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFG 155 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCC
Confidence 457788888888899999998887665
No 92
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=31.63 E-value=4.4e+02 Score=24.76 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceeeeec-CCC-----------CCCcHHH---HH-HHHHHHHHcCCccEEEecCcCH
Q 024802 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDY-----------SNPGYLD---AL-NHLTDLKEEGKIKTVALTNFDT 235 (262)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~d~iDL~~lH~-pd~-----------~~~~~~e---~~-~aL~~l~~~G~ir~IGvSn~~~ 235 (262)
.+.+++++.++..+ +|+.++|.+|.+.- |.. ..++.++ .+ .+.+.|.+.|.. .+++|||.-
T Consensus 179 qt~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~ 255 (400)
T PRK07379 179 QTLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYAK 255 (400)
T ss_pred CCHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheEC
Confidence 47777777777655 47888888886652 211 0111122 22 355678888986 589999963
No 93
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=31.60 E-value=3.2e+02 Score=23.47 Aligned_cols=133 Identities=12% Similarity=0.007 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEecCCCCCChhHHHHHHHhhccccCCCceeeeEEeecccCCCCCCCCHHHHHHHHHHHH
Q 024802 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (262)
Q Consensus 107 ~~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~s~~~i~~al~~SL 186 (262)
..++++..++.+.|.+.|+.-+-..+.|= .+..+.|+. . ++.+.|-..-.....+.+.-...+++.+
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~p~~v---~~a~~~l~~---~-------~v~v~tVigFP~G~~~~~~K~~E~~~Av 80 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVNPSYV---PLAKELLKG---T-------EVRICTVVGFPLGASTTDVKLYETKEAI 80 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeCHHHH---HHHHHHcCC---C-------CCeEEEEeCCCCCCCcHHHHHHHHHHHH
Confidence 35678999999999999887665544332 222333321 1 3444444321112233333334444444
Q ss_pred HHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHc--CCc-cEE-EecCcCHHHHHHHHHc--CCCEEEEeec
Q 024802 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKI-KTV-ALTNFDTERLRIILEN--GIPVVSNQVW 254 (262)
Q Consensus 187 ~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~--G~i-r~I-GvSn~~~~~l~~~~~~--g~~~~~~Q~~ 254 (262)
++|.|-||+++--..- ...++....+.+.+.++. |+. +-| -.+-.+.+++..+.+. ....++++..
T Consensus 81 -~~GAdEiDvv~n~g~l-~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTs 152 (211)
T TIGR00126 81 -KYGADEVDMVINIGAL-KDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTS 152 (211)
T ss_pred -HcCCCEEEeecchHhh-hCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 5799999998654321 122366677777777764 543 222 1122355666665541 1235555555
No 94
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=31.59 E-value=2.9e+02 Score=22.52 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCc-cEEEecCcCHHHHHHHHHc-CCCEEE
Q 024802 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILEN-GIPVVS 250 (262)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~i-r~IGvSn~~~~~l~~~~~~-g~~~~~ 250 (262)
+.--.+++.|.+-|+..|-+.+|+=. +..+.. .++-+.-..+.+.+.+|.. +.|-+|....-.-..+.+. |+.-..
T Consensus 9 haG~~lK~~l~~~L~~~g~eV~D~G~-~~~~~~-~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaANK~~GIRAA~ 86 (148)
T PRK05571 9 HAGFELKEEIIEHLEELGHEVIDLGP-DSYDAS-VDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAANKVKGIRAAL 86 (148)
T ss_pred CchHHHHHHHHHHHHHCCCEEEEcCC-CCCCCC-CCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHhcCCCeEEEE
Confidence 45567899999999999998888742 222212 2377788888899999987 7888888876665555543 454444
Q ss_pred Eeecc
Q 024802 251 NQVWH 255 (262)
Q Consensus 251 ~Q~~y 255 (262)
+.-+|
T Consensus 87 ~~d~~ 91 (148)
T PRK05571 87 CHDTY 91 (148)
T ss_pred ECCHH
Confidence 44443
No 95
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=31.07 E-value=75 Score=25.98 Aligned_cols=47 Identities=30% Similarity=0.205 Sum_probs=36.0
Q ss_pred ccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHH
Q 024802 193 CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE 243 (262)
Q Consensus 193 ~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~ 243 (262)
.=|++.+-..... ..++.++++.+++.| ++-|++++.....+.++.+
T Consensus 101 ~~Dv~I~iS~SG~---t~~~i~~~~~ak~~G-a~vI~IT~~~~s~La~~aD 147 (177)
T cd05006 101 PGDVLIGISTSGN---SPNVLKALEAAKERG-MKTIALTGRDGGKLLELAD 147 (177)
T ss_pred CCCEEEEEeCCCC---CHHHHHHHHHHHHCC-CEEEEEeCCCCCchhhhCC
Confidence 3488777665544 347999999999999 8899999987777776643
No 96
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=31.04 E-value=4.3e+02 Score=24.45 Aligned_cols=137 Identities=15% Similarity=0.191 Sum_probs=80.0
Q ss_pred CceeeccccCCCCCCC-----CCHHHHHHHHHHHHHcC---CCEEecCCCCCChhHHHHHHHhhccccCCCceeeeEEee
Q 024802 92 CRVLNGMWQTSGGWGR-----IDRDDAVDAMLRYADAG---LTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGL 163 (262)
Q Consensus 92 s~lGlGt~~~~~~~~~-----~~~~~~~~~l~~A~d~G---i~~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~ 163 (262)
..+|--|.++- .|+. .++++..+++....+.- +-.+|..+..+.-...+-+.+. ... -+.+.
T Consensus 28 ~~~C~RC~~l~-hy~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~----~~p-----iilV~ 97 (360)
T TIGR03597 28 EVYCQRCFRLK-HYNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG----GNP-----VLLVG 97 (360)
T ss_pred Ceeecchhhhh-ccCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhC----CCC-----EEEEE
Confidence 45666676653 3332 35566666666554221 2346765444431111222221 211 46788
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHH
Q 024802 164 TKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRI 240 (262)
Q Consensus 164 tK~~~~~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~ 240 (262)
+|..-.+...+.+.+.+.+++.++.+|....|++.+-.-. .. .+++.++.+.++.+.+.+--+|.+|..-+.|-.
T Consensus 98 NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~-g~-gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN 172 (360)
T TIGR03597 98 NKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKK-GN-GIDELLDKIKKARNKKDVYVVGVTNVGKSSLIN 172 (360)
T ss_pred EchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCC-CC-CHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHH
Confidence 9976433334566777777777777876544666554322 22 378888888888777788999999998766543
No 97
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=30.87 E-value=3.9e+02 Score=23.86 Aligned_cols=77 Identities=10% Similarity=-0.004 Sum_probs=48.5
Q ss_pred CHH-HHHHHHHHHHHcCCCEEecCCCCCC---h-h--HHHHHHHhhccccCCCceeeeEEeecccCCCCCCCCHHHHHHH
Q 024802 109 DRD-DAVDAMLRYADAGLTTFDMADHYGP---A-E--DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES 181 (262)
Q Consensus 109 ~~~-~~~~~l~~A~d~Gi~~fDTA~~YG~---s-E--~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~s~~~i~~a 181 (262)
+++ +...+.+.+.+.|..|+=|+.-|+. . | +++-+.+++..... ...++.+ .. -.+.+...+-
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~----~vgIKAs----GG--Irt~~~A~~~ 213 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAK----TVGFKPA----GG--VRTAEDAAQY 213 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCC----CeeEEcc----CC--CCCHHHHHHH
Confidence 445 4788999999999999999999853 2 2 23333333211000 0122222 21 3477888888
Q ss_pred HHHHHHHcCCCccc
Q 024802 182 IDVSRRRMDVPCLD 195 (262)
Q Consensus 182 l~~SL~rLg~d~iD 195 (262)
++.--+.||.++++
T Consensus 214 i~ag~~~lg~~~~~ 227 (257)
T PRK05283 214 LALADEILGADWAD 227 (257)
T ss_pred HHHHHHHhChhhcC
Confidence 89888999988765
No 98
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=30.77 E-value=4.5e+02 Score=24.53 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCChhHHHHHHHhhccccCC-----C-----------ceeeeEEeecccCCCCC
Q 024802 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERP-----P-----------EFLDKVRGLTKWVPPPV 171 (262)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~~r~r~-----~-----------~~~~~v~i~tK~~~~~~ 171 (262)
.+.+.-.++.+.|-+.|+-+|=|-..+...+. |.+...+-- + ..-..+.++|-
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~-----l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTG------ 155 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDL-----LESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTG------ 155 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHH-----HHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcc------
Confidence 56677888999999999999866654433222 121111100 0 00001222222
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceeeeecCCCC-CCcHHH-HHHHHHHHHHcCCccEEEecCcCHHHHHHH
Q 024802 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLD-ALNHLTDLKEEGKIKTVALTNFDTERLRII 241 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~-~~~~~e-~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~ 241 (262)
-.+-+.+.++++...++=. .|+.++|....- .| +++ -+.+|..|++.= -.-||+|.|+..-+.-+
T Consensus 156 ma~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap-~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l 222 (347)
T COG2089 156 MATIEEIEEAVAILRENGN---PDIALLHCTSAYPAP-FEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPL 222 (347)
T ss_pred cccHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCC-HHHhhHHHHHHHHHHh-CCccccccCccchhHHH
Confidence 2355778888876665543 399999974322 22 333 345555555543 34699999997754443
No 99
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=30.61 E-value=3.9e+02 Score=23.74 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCC
Q 024802 108 IDRDDAVDAMLRYADAGLTTFDMAD 132 (262)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gi~~fDTA~ 132 (262)
.+.++..++.....+.|+..|+...
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~ 42 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWG 42 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccC
Confidence 3567778888888899999999764
No 100
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=30.60 E-value=27 Score=23.52 Aligned_cols=21 Identities=14% Similarity=0.078 Sum_probs=18.3
Q ss_pred eeeeecCCCccccCceeeccc
Q 024802 79 SITVSNGNDSLEICRVLNGMW 99 (262)
Q Consensus 79 ~~~~~lG~tG~~Vs~lGlGt~ 99 (262)
++.+.++.+|+.||.+-+|+.
T Consensus 15 s~~~~l~dtglrvpv~KmGtg 35 (61)
T PF15221_consen 15 SLGRALRDTGLRVPVIKMGTG 35 (61)
T ss_pred cccccccccccCCceeeecch
Confidence 578889999999999999883
No 101
>PLN02775 Probable dihydrodipicolinate reductase
Probab=30.51 E-value=3.3e+02 Score=24.73 Aligned_cols=69 Identities=10% Similarity=-0.009 Sum_probs=47.6
Q ss_pred HHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHc-CCCEEEEeeccc
Q 024802 182 IDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVWHS 256 (262)
Q Consensus 182 l~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~-g~~~~~~Q~~ys 256 (262)
+++.|..+.-+|.|++.+..- . .+.+.+-++.+.+.|+--=||.+.|+.++++++.+. ++ +.+.--+||
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT---~--P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~i-~vv~apNfS 137 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYT---L--PDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGV-YAVIAPQMG 137 (286)
T ss_pred HHHHHHHhhccCCCEEEEECC---C--hHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCCc-cEEEECccc
Confidence 345554554457887766542 2 356778889999999999999999999999887764 34 334434444
No 102
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=30.44 E-value=2.5e+02 Score=26.22 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCCccceeeeecCC--CCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHcCCCEE
Q 024802 178 VRESIDVSRRRMDVPCLDMLQFHWWD--YSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV 249 (262)
Q Consensus 178 i~~al~~SL~rLg~d~iDL~~lH~pd--~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g~~~~ 249 (262)
-+-.+-+.|.++|+++|++-..-.|. |...+.++.++.+ ++...++..+++ .+...++.+.+.|.+..
T Consensus 69 ~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i---~~~~~~~~~~l~-~n~~die~A~~~g~~~v 138 (347)
T PLN02746 69 VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAV---RNLEGARFPVLT-PNLKGFEAAIAAGAKEV 138 (347)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHH---HhccCCceeEEc-CCHHHHHHHHHcCcCEE
Confidence 34456667999999999987444442 2222233444444 443345666664 58899999998775543
No 103
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=29.67 E-value=2.8e+02 Score=21.90 Aligned_cols=61 Identities=15% Similarity=0.042 Sum_probs=43.1
Q ss_pred eeEEeecccCCCCCCCCHHHHHHHHHHHHHHcCC----CccceeeeecCCCCCCcHHHHHHHHHHHHH
Q 024802 158 DKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV----PCLDMLQFHWWDYSNPGYLDALNHLTDLKE 221 (262)
Q Consensus 158 ~~v~i~tK~~~~~~~~s~~~i~~al~~SL~rLg~----d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~ 221 (262)
..+.++-|++. ...+..+++.+.++...+.. ...|++++-.+.....++.+..+.|+.+.+
T Consensus 49 vG~~VSKKvG~---AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 49 VGFTVTKKNGN---AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred EEEEEecccCc---chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 34555556533 35778888888888876643 568999999988766667777777776655
No 104
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=29.46 E-value=1.5e+02 Score=24.87 Aligned_cols=43 Identities=16% Similarity=0.080 Sum_probs=26.5
Q ss_pred cceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHH
Q 024802 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 241 (262)
Q Consensus 194 iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~ 241 (262)
+|.+|+|..++ . +..+.+.+......++.+|++.++..++.+.
T Consensus 74 ~d~Vqlhg~e~----~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~ 116 (203)
T cd00405 74 LDVVQLHGDES----P-EYCAQLRARLGLPVIKAIRVKDEEDLEKAAA 116 (203)
T ss_pred CCEEEECCCCC----H-HHHHHHHhhcCCcEEEEEecCChhhHHHhhh
Confidence 68889997541 1 2333333333356888999998876554333
No 105
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=28.96 E-value=3e+02 Score=22.12 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCc-cEEEecCcCHHHHHHHHHc-CCCEEE
Q 024802 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILEN-GIPVVS 250 (262)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~i-r~IGvSn~~~~~l~~~~~~-g~~~~~ 250 (262)
+.--.+++.+.+-|+..|-+.+|+=-- +.+..++-+.-..+.+.+.+|.. +.|-+|....-....+.+. |+.-..
T Consensus 8 h~g~~lK~~i~~~L~~~g~eV~D~G~~---~~~~~dy~~~a~~va~~V~~~~~d~GIliCgtGiG~~iaANK~~GIrAa~ 84 (140)
T PF02502_consen 8 HAGFELKEAIKEYLEEKGYEVIDFGTY---SEDSVDYPDFAEKVAEAVASGEADRGILICGTGIGMSIAANKVPGIRAAL 84 (140)
T ss_dssp GGGHHHHHHHHHHHHHTTEEEEEESES---STST--HHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHHHTSTT--EEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEeCCC---CCCCCCHHHHHHHHHHHHHcccCCeEEEEcCCChhhhhHhhcCCCEEEEe
Confidence 344578999999999998776666422 22233477888888899999987 7888888887776666654 555555
Q ss_pred Eeeccc
Q 024802 251 NQVWHS 256 (262)
Q Consensus 251 ~Q~~ys 256 (262)
++-+|+
T Consensus 85 ~~d~~~ 90 (140)
T PF02502_consen 85 CSDPYS 90 (140)
T ss_dssp -SSHHH
T ss_pred eCCHHH
Confidence 554443
No 106
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=28.75 E-value=3.6e+02 Score=23.75 Aligned_cols=43 Identities=12% Similarity=0.068 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEecCCCC-----CChhHHHHHHHhh
Q 024802 105 WGRIDRDDAVDAMLRYADAGLTTFDMADHY-----GPAEDLYGIFINR 147 (262)
Q Consensus 105 ~~~~~~~~~~~~l~~A~d~Gi~~fDTA~~Y-----G~sE~~lG~al~~ 147 (262)
.|..+.++..++++.|.+.|++-+=..++| .++.+.+.+.+.+
T Consensus 14 DGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ 61 (254)
T COG4464 14 DGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQ 61 (254)
T ss_pred CCCCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHH
Confidence 345677999999999999999976544444 3455555555444
No 107
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=28.16 E-value=3.7e+02 Score=23.26 Aligned_cols=119 Identities=13% Similarity=0.092 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEecCCCCCChhHHHHHHHhhccccCCCceeeeEEeecccCCCCCCCCHHHHH-HHHHHH
Q 024802 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVR-ESIDVS 185 (262)
Q Consensus 107 ~~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~s~~~i~-~al~~S 185 (262)
..++++..++.+.|.+.|+.-+-..+.|-. +..+.|+. . .+.+.+-..-. .....-..+ ...++.
T Consensus 18 ~~t~~~i~~~~~~A~~~~~~avcv~p~~v~---~a~~~l~~---~-------~v~v~tVigFP-~G~~~~~~K~~e~~~A 83 (221)
T PRK00507 18 EATEEDIDKLCDEAKEYGFASVCVNPSYVK---LAAELLKG---S-------DVKVCTVIGFP-LGANTTAVKAFEAKDA 83 (221)
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEECHHHHH---HHHHHhCC---C-------CCeEEEEeccc-CCCChHHHHHHHHHHH
Confidence 346789999999999988877765554321 22233321 1 23444433211 122222222 233333
Q ss_pred HHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHc--CCccEEEe---cC-cCHHHHHHHHH
Q 024802 186 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKIKTVAL---TN-FDTERLRIILE 243 (262)
Q Consensus 186 L~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~--G~ir~IGv---Sn-~~~~~l~~~~~ 243 (262)
+ ..|.+-+|++ +.+..+..++++...+.+.++++. |+ .+=| +. .+.+++.++.+
T Consensus 84 i-~~GA~EiD~V-in~~~~~~g~~~~v~~ei~~v~~~~~~~--~lKvIlEt~~L~~e~i~~a~~ 143 (221)
T PRK00507 84 I-ANGADEIDMV-INIGALKSGDWDAVEADIRAVVEAAGGA--VLKVIIETCLLTDEEKVKACE 143 (221)
T ss_pred H-HcCCceEeee-ccHHHhcCCCHHHHHHHHHHHHHhcCCc--eEEEEeecCcCCHHHHHHHHH
Confidence 3 4788999965 444444455577888888888874 43 3333 33 46677766554
No 108
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=28.04 E-value=2.4e+02 Score=23.02 Aligned_cols=74 Identities=12% Similarity=0.136 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHH--cCCccEEEecCcCHHHHHHHHHc-CCCE
Q 024802 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILEN-GIPV 248 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~--~G~ir~IGvSn~~~~~l~~~~~~-g~~~ 248 (262)
..+-+++.+.+++.-+.+|++ ++.+|=.. -.+.++.+.+..+ +|.|-.=|--+|..-.+..+++. +.|+
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~~-~~~~QSN~-------EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~ 96 (146)
T PRK13015 25 HETLADVEALCRAAAEALGLE-VEFRQSNH-------EGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPV 96 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEeeCc-------HHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCE
Confidence 457788999999999999975 67666331 3467888887755 35665556666666667777664 4443
Q ss_pred EEEeecc
Q 024802 249 VSNQVWH 255 (262)
Q Consensus 249 ~~~Q~~y 255 (262)
+.+..
T Consensus 97 --VEVHi 101 (146)
T PRK13015 97 --IEVHI 101 (146)
T ss_pred --EEEEc
Confidence 44444
No 109
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=27.74 E-value=1.1e+02 Score=23.44 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEec
Q 024802 179 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT 231 (262)
Q Consensus 179 ~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvS 231 (262)
+..+++.|+.+....+|.+++..++.-..+..+....++.|.+.| |+-+-++
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g-i~l~~~~ 102 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG-VRVVTAD 102 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC-CEEEEec
Confidence 555666666666567889988888765544567777778887776 3444433
No 110
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=27.35 E-value=3.3e+02 Score=21.98 Aligned_cols=81 Identities=11% Similarity=-0.007 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCc-cEEEecCcCHHHHHHHHHc-CCCEE
Q 024802 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILEN-GIPVV 249 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~i-r~IGvSn~~~~~l~~~~~~-g~~~~ 249 (262)
++.--.+++.+.+-|+..|-+.+|+=. |..++ .++-+.-..+.+.+.+|.+ +.|-+|....-.-..+.+. |+.-.
T Consensus 7 DhaG~~lK~~l~~~L~~~g~eV~D~G~-~~~~~--~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~siaANK~~GIraa 83 (143)
T TIGR01120 7 DHAGFILKEEIKAFLVERGVKVIDKGT-WSSER--TDYPHYAKQVALAVAGGEVDGGILICGTGIGMSIAANKFAGIRAA 83 (143)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEEeCC-CCCCC--CCHHHHHHHHHHHHHCCCCceEEEEcCCcHHHHHHHhcCCCeEEE
Confidence 345567899999999999998888753 22232 2366777778888888887 6777887776555555543 55555
Q ss_pred EEeecc
Q 024802 250 SNQVWH 255 (262)
Q Consensus 250 ~~Q~~y 255 (262)
.+.-+|
T Consensus 84 ~~~d~~ 89 (143)
T TIGR01120 84 LCSEPY 89 (143)
T ss_pred EECCHH
Confidence 554444
No 111
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=27.25 E-value=2e+02 Score=23.33 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHH--cCCccEEEecCcCHHHHHHHHHc-CCCE
Q 024802 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILEN-GIPV 248 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~--~G~ir~IGvSn~~~~~l~~~~~~-g~~~ 248 (262)
..+-+++.+.+++.-+.+|++ ++.+|-.. -.+.++++.+..+ +|.|-.=|--.|+.-.+..++.. ++|
T Consensus 23 ~~tl~~i~~~l~~~a~~~g~~-v~~~QSN~-------Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P- 93 (140)
T cd00466 23 TTTLADIEALLRELAAELGVE-VEFFQSNH-------EGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIP- 93 (140)
T ss_pred cCCHHHHHHHHHHHHHHcCCE-EEEEeeCc-------HHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCC-
Confidence 457789999999999999975 77776431 3567888888765 45555555556666667776654 344
Q ss_pred EEEeecc
Q 024802 249 VSNQVWH 255 (262)
Q Consensus 249 ~~~Q~~y 255 (262)
++.+..
T Consensus 94 -~VEVHi 99 (140)
T cd00466 94 -VIEVHI 99 (140)
T ss_pred -EEEEec
Confidence 344444
No 112
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=27.10 E-value=4.3e+02 Score=23.13 Aligned_cols=139 Identities=13% Similarity=0.004 Sum_probs=75.3
Q ss_pred cccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCChhHHHHHHHhhccccCCCceeeeEEeecccCC
Q 024802 89 LEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVP 168 (262)
Q Consensus 89 ~~Vs~lGlGt~~~~~~~~~~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~ 168 (262)
.++-.++|||-+- .|. ...++..+.+.. -..|+....++. -+-++|+..+.. ++.+.|-.
T Consensus 70 a~~dvi~~~cTsg--s~~-~G~~~~~~~i~~-~~~g~p~tt~~~-------A~~~AL~alg~~-------RIalvTPY-- 129 (239)
T TIGR02990 70 EELDVVAYSCTSA--SVV-IGDDEVTRAINA-AKPGTPVVTPSS-------AAVDGLAALGVR-------RISLLTPY-- 129 (239)
T ss_pred CCCCEEEEccchh--hee-cCHHHHHHHHHh-cCCCCCeeCHHH-------HHHHHHHHcCCC-------EEEEECCC--
Confidence 5688899998322 221 113343333332 123666665442 245677766443 56666643
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCC---CcHHHHHHHHHHHHHcCCccEEEecCcC---HHHHHHHH
Q 024802 169 PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN---PGYLDALNHLTDLKEEGKIKTVALTNFD---TERLRIIL 242 (262)
Q Consensus 169 ~~~~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~---~~~~e~~~aL~~l~~~G~ir~IGvSn~~---~~~l~~~~ 242 (262)
.+.+.+.+.+.++.-|.+-++.--+.-.+... .+.+.+.+...++ +..-+.+|=+|.-+ .+.++++.
T Consensus 130 ------~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~-~~~~aDAifisCTnLrt~~vi~~lE 202 (239)
T TIGR02990 130 ------TPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAA-FDPDADALFLSCTALRAATCAQRIE 202 (239)
T ss_pred ------cHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHh-cCCCCCEEEEeCCCchhHHHHHHHH
Confidence 25688889999999998776664433222110 1134555555555 34456677666433 34455554
Q ss_pred Hc-CCC-EEEEeec
Q 024802 243 EN-GIP-VVSNQVW 254 (262)
Q Consensus 243 ~~-g~~-~~~~Q~~ 254 (262)
+. |.| +++||.-
T Consensus 203 ~~lGkPVlsSNqat 216 (239)
T TIGR02990 203 QAIGKPVVTSNQAT 216 (239)
T ss_pred HHHCCCEEEHHHHH
Confidence 43 666 5567653
No 113
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.01 E-value=3e+02 Score=25.96 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=41.8
Q ss_pred eeeecCCCC-----------CCcHHHHHHHHHHHHHcCCccEEEe-----c--CcCHHHHHHHHH--cCC------CEEE
Q 024802 197 LQFHWWDYS-----------NPGYLDALNHLTDLKEEGKIKTVAL-----T--NFDTERLRIILE--NGI------PVVS 250 (262)
Q Consensus 197 ~~lH~pd~~-----------~~~~~e~~~aL~~l~~~G~ir~IGv-----S--n~~~~~l~~~~~--~g~------~~~~ 250 (262)
+-||.|+.. .+ +++.++++.+..++.. |.|-+ - |-++++.+++.+ ++. +..+
T Consensus 232 iSLHA~~~e~R~~lmPin~~yp-l~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~V 309 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYP-IADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHV 309 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCC-HHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEE
Confidence 578988642 23 7889999988765433 23333 2 556777777766 356 7899
Q ss_pred Eeecccccc
Q 024802 251 NQVWHSNGW 259 (262)
Q Consensus 251 ~Q~~ys~~~ 259 (262)
|-++|||..
T Consensus 310 NLIp~Np~~ 318 (371)
T PRK14461 310 NLIPWNPVP 318 (371)
T ss_pred EEecCCCCC
Confidence 999999953
No 114
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=26.97 E-value=2e+02 Score=24.13 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=38.5
Q ss_pred HHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC-cCHHHHHHHHHcCCCEEEEeeccc
Q 024802 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQVWHS 256 (262)
Q Consensus 185 SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn-~~~~~l~~~~~~g~~~~~~Q~~ys 256 (262)
.+..+|.||+-+.+ +|..... + ..+...++.+.-..+.+||-- -+.+++.++.+. .+++++|+.-+
T Consensus 14 ~~~~~g~d~~Gfi~--~~~S~R~-v--~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~-~~ld~vQLHG~ 80 (197)
T PF00697_consen 14 LAAELGADYLGFIF--YPKSPRY-V--SPDQARELVSAVPPKIVGVFVNQSPEEILEIVEE-LGLDVVQLHGD 80 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB-----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHH-CTESEEEE-SG
T ss_pred HHHHcCCCEEeeec--CCCCCCc-c--CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHH-cCCCEEEECCC
Confidence 45678999888863 4432211 1 233345555555555899865 466777777665 67999998643
No 115
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=26.87 E-value=5.2e+02 Score=24.07 Aligned_cols=133 Identities=11% Similarity=0.025 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCC--------CChhHHHHHHHhhccccCCC----------------ceeeeEEee
Q 024802 108 IDRDDAVDAMLRYADAGLTTFDMADHY--------GPAEDLYGIFINRVRRERPP----------------EFLDKVRGL 163 (262)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gi~~fDTA~~Y--------G~sE~~lG~al~~~~r~r~~----------------~~~~~v~i~ 163 (262)
++.++-.++++...+.|++.|+....- ++.++++ +.+++....+.. .....+++.
T Consensus 65 ~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~-~~i~~~~~~~~~~l~~n~~die~A~~~g~~~v~i~~s 143 (347)
T PLN02746 65 VPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVM-AAVRNLEGARFPVLTPNLKGFEAAIAAGAKEVAVFAS 143 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHH-HHHHhccCCceeEEcCCHHHHHHHHHcCcCEEEEEEe
Confidence 455888899999999999999976422 2334443 333321111000 000011111
Q ss_pred cc-cCC-CCCCCCHHHHHHHHHHHHHHc---CCCccceee---eecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCc--
Q 024802 164 TK-WVP-PPVKMTSSIVRESIDVSRRRM---DVPCLDMLQ---FHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-- 233 (262)
Q Consensus 164 tK-~~~-~~~~~s~~~i~~al~~SL~rL---g~d~iDL~~---lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~-- 233 (262)
+- .+. ...+.+++++.+.+.+..+.. |. ++..++ +..|+...-+.+..++..+++.+.| +..|.++.-
T Consensus 144 ~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl-~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~G-ad~I~l~DT~G 221 (347)
T PLN02746 144 ASESFSKSNINCSIEESLVRYREVALAAKKHSI-PVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMG-CYEISLGDTIG 221 (347)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcC-CCEEEecCCcC
Confidence 00 000 001346666666555555433 43 344333 3344443333677888888899888 567888764
Q ss_pred --CHHHHHHHHH
Q 024802 234 --DTERLRIILE 243 (262)
Q Consensus 234 --~~~~l~~~~~ 243 (262)
+|.++.++.+
T Consensus 222 ~a~P~~v~~lv~ 233 (347)
T PLN02746 222 VGTPGTVVPMLE 233 (347)
T ss_pred CcCHHHHHHHHH
Confidence 5777776654
No 116
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=26.69 E-value=91 Score=23.82 Aligned_cols=27 Identities=11% Similarity=0.319 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCC
Q 024802 109 DRDDAVDAMLRYADAGLTTFDMADHYG 135 (262)
Q Consensus 109 ~~~~~~~~l~~A~d~Gi~~fDTA~~YG 135 (262)
+.+.+.+....+++.|++.||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 456788899999999999999999985
No 117
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=26.65 E-value=3.8e+02 Score=22.41 Aligned_cols=80 Identities=8% Similarity=-0.007 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCc-cEEEecCcCHHHHHHHHHc-CCCEEE
Q 024802 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILEN-GIPVVS 250 (262)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~i-r~IGvSn~~~~~l~~~~~~-g~~~~~ 250 (262)
+.--.+++.|.+-|+..|-+.+|+=-. ..+ ..++-+.-..+.+.+.+|.. +.|-+|....-.-..+.+. |+.-..
T Consensus 9 haG~~lK~~l~~~L~~~G~eV~D~G~~-~~e--~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~siaANKv~GIRAA~ 85 (171)
T PRK08622 9 HIVTDEKMAVSDYLKSKGHEVIDVGTY-DFT--RTHYPIFGKKVGEAVASGEADLGVCICGTGVGISNAVNKVPGIRSAL 85 (171)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEcCCC-CCC--CCChHHHHHHHHHHHHcCCCcEEEEEcCCcHHHHHHHhcCCCeEEEE
Confidence 445568999999999999888887532 212 22366777888888888886 7788888776665555553 555555
Q ss_pred Eeecc
Q 024802 251 NQVWH 255 (262)
Q Consensus 251 ~Q~~y 255 (262)
+.-+|
T Consensus 86 ~~d~~ 90 (171)
T PRK08622 86 VRDMT 90 (171)
T ss_pred eCCHH
Confidence 54444
No 118
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=26.57 E-value=2.6e+02 Score=20.48 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHcCCCccceeeeecCCC-----CCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHH
Q 024802 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDY-----SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 242 (262)
Q Consensus 176 ~~i~~al~~SL~rLg~d~iDL~~lH~pd~-----~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~ 242 (262)
.+-.+++++.++.+|.+-.++|+.-.+.. +.|+.+......-.+...|.++.-=+--++.+++.++.
T Consensus 19 ~~R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~G~v~~et~~a~~~~e~~~~~ 90 (91)
T PF08734_consen 19 PDRAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSSGNVRTETLRAFPWDEFDEIV 90 (91)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcCCceEEEEEecCCHHHHHHHh
Confidence 34566788888999999888887754321 23556667777788899999988777778888887765
No 119
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=26.40 E-value=5.8e+02 Score=24.39 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceeeee-cCC----------CCCCcHHH---HH-HHHHHHHHcCCccEEEecCcCH
Q 024802 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFH-WWD----------YSNPGYLD---AL-NHLTDLKEEGKIKTVALTNFDT 235 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d~iDL~~lH-~pd----------~~~~~~~e---~~-~aL~~l~~~G~ir~IGvSn~~~ 235 (262)
..+.+.+++.++..+ .++.+++.+|.+- .|. ...++.++ .+ .+.+.|.+.|..+ +++|||.-
T Consensus 214 gqt~e~~~~~l~~~~-~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~-ye~s~far 290 (453)
T PRK09249 214 KQTPESFARTLEKVL-ELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQY-IGMDHFAL 290 (453)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEE-EeccceeC
Confidence 358888888887766 4899999998653 111 11122222 22 3446677888865 89999964
No 120
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=26.00 E-value=5.2e+02 Score=23.73 Aligned_cols=61 Identities=11% Similarity=0.203 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceeeeec-CCCC-------CCcHHHH-HHHHHHHHHcCCccEEEecCcCH
Q 024802 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDYS-------NPGYLDA-LNHLTDLKEEGKIKTVALTNFDT 235 (262)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~d~iDL~~lH~-pd~~-------~~~~~e~-~~aL~~l~~~G~ir~IGvSn~~~ 235 (262)
.+.+.+++.++..+ +++.+++.+|.+.- |+.. .++.++. ..+.+.|.+.|.. .+++|||.-
T Consensus 162 qt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~-~yeis~fa~ 231 (350)
T PRK08446 162 DNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFK-QYEISNFGK 231 (350)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCc-EEEeehhhC
Confidence 47777877776644 58888888887653 2110 0112233 3345677778975 689999875
No 121
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=25.83 E-value=4.9e+02 Score=23.38 Aligned_cols=126 Identities=14% Similarity=0.136 Sum_probs=64.9
Q ss_pred HHHHHHHHHcCCCEE--ecCCCCCChhHHHH--HHHhhccccCCCceeee-EEeecccCC----CCCCCCHHHHHHHHHH
Q 024802 114 VDAMLRYADAGLTTF--DMADHYGPAEDLYG--IFINRVRRERPPEFLDK-VRGLTKWVP----PPVKMTSSIVRESIDV 184 (262)
Q Consensus 114 ~~~l~~A~d~Gi~~f--DTA~~YG~sE~~lG--~al~~~~r~r~~~~~~~-v~i~tK~~~----~~~~~s~~~i~~al~~ 184 (262)
.+.+..|++.|++.+ |-+.. +.++.+. +.+.+..++..-.+-.+ ..+..+-.+ .....+++..++.++
T Consensus 87 ~e~i~~Al~~G~tsVm~d~s~~--~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~- 163 (281)
T PRK06806 87 FEKIKEALEIGFTSVMFDGSHL--PLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAE- 163 (281)
T ss_pred HHHHHHHHHcCCCEEEEcCCCC--CHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHH-
Confidence 568888999999975 54432 2333333 22333222221011111 122211111 011245555555443
Q ss_pred HHHHcCCCccce--eeeecCCCCCCc-HHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHcCC
Q 024802 185 SRRRMDVPCLDM--LQFHWWDYSNPG-YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGI 246 (262)
Q Consensus 185 SL~rLg~d~iDL--~~lH~pd~~~~~-~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g~ 246 (262)
+.|+||+-+ --+|...+..+. --+.++.+.+..+-. +-.+|-|.-+.+++.++.+.|+
T Consensus 164 ---~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iP-lV~hG~SGI~~e~~~~~i~~G~ 224 (281)
T PRK06806 164 ---ETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIP-LVLHGGSGISPEDFKKCIQHGI 224 (281)
T ss_pred ---hhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCC-EEEECCCCCCHHHHHHHHHcCC
Confidence 578888887 566764332221 123343333333333 4578999999999999998774
No 122
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=25.81 E-value=5.8e+02 Score=24.93 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCCCccceeeeecCCCCCCc---HHHHHHHHHH-H----------HHcCCccEEEecCc------CH
Q 024802 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG---YLDALNHLTD-L----------KEEGKIKTVALTNF------DT 235 (262)
Q Consensus 176 ~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~---~~e~~~aL~~-l----------~~~G~ir~IGvSn~------~~ 235 (262)
+-+-+.++...++++.+.++++.++.|+..... .+.+++.+-+ + .+.+.|--||.++. +.
T Consensus 98 elIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~ 177 (511)
T TIGR01278 98 SLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDL 177 (511)
T ss_pred HHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHH
Confidence 334344444455555445778888777654321 2223322221 1 12355777887763 33
Q ss_pred HHHHHHHHc-CCCE
Q 024802 236 ERLRIILEN-GIPV 248 (262)
Q Consensus 236 ~~l~~~~~~-g~~~ 248 (262)
++|+++++. |+.+
T Consensus 178 ~elkrlL~~lGi~v 191 (511)
T TIGR01278 178 IELRRLLKTLGIEV 191 (511)
T ss_pred HHHHHHHHHCCCeE
Confidence 556666654 5444
No 123
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.81 E-value=4.4e+02 Score=22.87 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCChhHHHHHH
Q 024802 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIF 144 (262)
Q Consensus 109 ~~~~~~~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~a 144 (262)
+.+++.++.+..++.|++.+.-...-.+..+.+.+.
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l 60 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAEL 60 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHH
Confidence 678999999999999999998776554555555443
No 124
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=25.74 E-value=3e+02 Score=20.93 Aligned_cols=63 Identities=11% Similarity=0.012 Sum_probs=43.4
Q ss_pred eeeEEeecccCCCCCCCCHHHHHHHHHHHHHHcCC---CccceeeeecCCCCCCcHHHHHHHHHHHHHc
Q 024802 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (262)
Q Consensus 157 ~~~v~i~tK~~~~~~~~s~~~i~~al~~SL~rLg~---d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~ 222 (262)
+..+.++-|++. ...+..+++.+.+....... ...|++++-.++....++.+..+.|..+.+.
T Consensus 39 R~GisVsKKvgk---AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 39 RVGISVSKKVGN---AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred EEEEEEecccCc---hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 345556666543 34677888888888776532 3579999998877666677877777776654
No 125
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=25.74 E-value=4.5e+02 Score=22.96 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecC
Q 024802 108 IDRDDAVDAMLRYADAGLTTFDMA 131 (262)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gi~~fDTA 131 (262)
++.++..++++...+.||..++..
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 355888889999889999999986
No 126
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=25.41 E-value=2.2e+02 Score=23.70 Aligned_cols=74 Identities=12% Similarity=0.025 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCChhHHHHHHHhhccccCCCceeeeEEeecccCCCCCCCCHHHHHHHHHHHHHH
Q 024802 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 188 (262)
Q Consensus 109 ~~~~~~~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~s~~~i~~al~~SL~r 188 (262)
.++...-++++|-+.||.+|=.|..||.+-..+-+.+.. + . ++.+.|-- .....-+...+.+.+++-|+.
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg---~-l-----kvVvVthh-~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEG---D-L-----KVVVVTHH-AGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhccc---C-c-----eEEEEEee-cccccCCceecCHHHHHHHHH
Confidence 345566778888999999999999999755443343322 1 1 23333321 111112333456667778888
Q ss_pred cCCC
Q 024802 189 MDVP 192 (262)
Q Consensus 189 Lg~d 192 (262)
.|.+
T Consensus 82 rGa~ 85 (186)
T COG1751 82 RGAK 85 (186)
T ss_pred cCce
Confidence 8853
No 127
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=25.38 E-value=5.4e+02 Score=23.68 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCccEEEecCc-CHHHHHHHHHcC
Q 024802 212 ALNHLTDLKEEGKIKTVALTNF-DTERLRIILENG 245 (262)
Q Consensus 212 ~~~aL~~l~~~G~ir~IGvSn~-~~~~l~~~~~~g 245 (262)
.|+..++.++.=++--|++-+. ++++++++++.+
T Consensus 273 ~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~ 307 (343)
T cd04734 273 FLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAG 307 (343)
T ss_pred hHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcC
Confidence 3555666666656777888875 789999988753
No 128
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=25.29 E-value=3.7e+02 Score=21.76 Aligned_cols=62 Identities=6% Similarity=-0.003 Sum_probs=41.8
Q ss_pred eEEeecccCCCCCCCCHHHHHHHHHHHHHHc--CCCccceeeeecCCCCCCcHHHHHHHHHHHHHc
Q 024802 159 KVRGLTKWVPPPVKMTSSIVRESIDVSRRRM--DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (262)
Q Consensus 159 ~v~i~tK~~~~~~~~s~~~i~~al~~SL~rL--g~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~ 222 (262)
.+.++-|+... ...+..+++.+.+..+.+ .+...|++++-.+.....++.++.+.|..+.+.
T Consensus 51 G~sVSKKvg~~--AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 51 GLAVSRKVDTR--AVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred EEEEeccccCc--chhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 45555565332 346777777777777654 233459999988876666688888888877765
No 129
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=25.13 E-value=2.2e+02 Score=27.49 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHH
Q 024802 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 242 (262)
Q Consensus 174 s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~ 242 (262)
+.+...+.+.+.|+.||+++ |-++.. ...++..-+.+++|+++|++ =.|-++.+++++..
T Consensus 49 s~~~~~~~I~e~L~wLGI~~-De~y~Q-----Ser~~~y~~~~e~L~e~G~A---Y~C~Ct~eel~~~r 108 (445)
T PRK12558 49 SKQEYADAIAEDLKWLGINW-DRTFRQ-----SDRFDRYDEAAEKLKAAGRL---YPCYETPEELELKR 108 (445)
T ss_pred chHHHHHHHHHHHHHcCCCC-CccccH-----HHHHHHHHHHHHHHHHCCCE---EEecCchHHHHHHH
Confidence 55778899999999999984 754221 12244456778999999985 23555677776544
No 130
>PRK05660 HemN family oxidoreductase; Provisional
Probab=25.04 E-value=5.6e+02 Score=23.81 Aligned_cols=62 Identities=10% Similarity=0.037 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceeeeec-CCC-------CCCcHHHHHH----HHHHHHHcCCccEEEecCcCHH
Q 024802 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDY-------SNPGYLDALN----HLTDLKEEGKIKTVALTNFDTE 236 (262)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~d~iDL~~lH~-pd~-------~~~~~~e~~~----aL~~l~~~G~ir~IGvSn~~~~ 236 (262)
.+.+.+++.++..++ ++.|++.+|.+-- |+. ..++.++.++ +.+.|.+.|.. .+++|||.-.
T Consensus 171 qt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yei~~fa~~ 244 (378)
T PRK05660 171 QSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQ-QYETSAYAKP 244 (378)
T ss_pred CCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCc-EeecccccCC
Confidence 477888887776554 8889888886642 221 1122223232 33567777875 4799999643
No 131
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=25.01 E-value=5.6e+02 Score=23.77 Aligned_cols=82 Identities=10% Similarity=0.087 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHcCCC-EEEE
Q 024802 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP-VVSN 251 (262)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g~~-~~~~ 251 (262)
.+.+.+.+.++. +...|+..+=++ ..-.+...+++...+.++.+++..--..|-+...+.++++++.+.|+. +.++
T Consensus 103 Ls~eEI~~~a~~-~~~~Gv~~i~lv--gGe~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~aGv~r~~i~ 179 (366)
T TIGR02351 103 LNEEEIEREIEA-IKKSGFKEILLV--TGESEKAAGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVEAGLDGVTVY 179 (366)
T ss_pred CCHHHHHHHHHH-HHhCCCCEEEEe--eCCCCCCCCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHHcCCCEEEEE
Confidence 467777777765 445676654444 232222233566777777777653211244445678888888877753 5555
Q ss_pred eecccc
Q 024802 252 QVWHSN 257 (262)
Q Consensus 252 Q~~ys~ 257 (262)
|=.||+
T Consensus 180 lET~~~ 185 (366)
T TIGR02351 180 QETYNE 185 (366)
T ss_pred eecCCH
Confidence 555543
No 132
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.87 E-value=4.4e+02 Score=22.52 Aligned_cols=37 Identities=22% Similarity=0.157 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCChhHHHHHH
Q 024802 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIF 144 (262)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~a 144 (262)
.+.+++.++.+..++.|++.+.-...--+..+.+.+.
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l 49 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAV 49 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHH
Confidence 3678999999999999999998776544455555443
No 133
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=24.78 E-value=4.5e+02 Score=22.53 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCChhHHHHHHHhhc
Q 024802 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRV 148 (262)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~ 148 (262)
.+.+++.++.+..++.|++.+.-...-.+..+.+.+.-+++
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~ 57 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEV 57 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHC
Confidence 36789999999999999999987764444555555544433
No 134
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=24.68 E-value=3.8e+02 Score=27.10 Aligned_cols=63 Identities=11% Similarity=-0.037 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHHcCCCccc-eeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHcC
Q 024802 174 TSSIVRESIDVSRRRMDVPCLD-MLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 245 (262)
Q Consensus 174 s~~~i~~al~~SL~rLg~d~iD-L~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g 245 (262)
......+++.+.|+.||+++=. .++ ....++.-.+++++|.++|++ . +|..+.+++++....|
T Consensus 99 ~~~e~~d~IleDL~WLGl~wDe~~~~------QSdr~d~y~e~a~~Li~~G~A--Y-~c~cs~eei~~~r~~g 162 (601)
T PTZ00402 99 EKEHFEQAILDDLATLGVSWDVGPTY------SSDYMDLMYEKAEELIKKGLA--Y-CDKTPREEMQKCRFDG 162 (601)
T ss_pred cCHHHHHHHHHHHHHCCCCCCCceee------ccccHHHHHHHHHHHHHcCCE--E-EecCCHHHHHHHHhCC
Confidence 4456788899999999997522 221 122366678888999999996 3 8888889887765333
No 135
>PRK06740 histidinol-phosphatase; Validated
Probab=24.36 E-value=5.6e+02 Score=23.52 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCCccceeeeecCCC---CCCc-------------HHHHHHHHHHHHHcCCccEEEec
Q 024802 180 ESIDVSRRRMDVPCLDMLQFHWWDY---SNPG-------------YLDALNHLTDLKEEGKIKTVALT 231 (262)
Q Consensus 180 ~al~~SL~rLg~d~iDL~~lH~pd~---~~~~-------------~~e~~~aL~~l~~~G~ir~IGvS 231 (262)
..+++.|+....||+ +.-+|+.+. ..+. +..-.+.+.++.+.|++..||=-
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHp 222 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHL 222 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCc
Confidence 345566777788887 778897531 1111 12245677888899998888743
No 136
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=24.20 E-value=2.6e+02 Score=25.90 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=51.1
Q ss_pred HHHHHcCCCEEecCCCCCChhHHHHHHHhhccccCCCceeeeEEeecccCCCCCCCCHHHHHHHHHHHHHHcCCCcccee
Q 024802 118 LRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDML 197 (262)
Q Consensus 118 ~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~s~~~i~~al~~SL~rLg~d~iDL~ 197 (262)
...-+.|+.|.|.. |. .-..++-.+.....-+|..+++--.. ....+.+++.+-.++. +.+|.+- ++
T Consensus 10 ~~~E~~G~~f~~~~---G~----~~d~~~ilk~~G~N~vRlRvwv~P~~---~g~~~~~~~~~~akra-k~~Gm~v--ll 76 (332)
T PF07745_consen 10 PEMEAAGVKFYDEN---GQ----EKDLFQILKDHGVNAVRLRVWVNPYD---GGYNDLEDVIALAKRA-KAAGMKV--LL 76 (332)
T ss_dssp HHHHHTT---B-TT---SS----B--HHHHHHHTT--EEEEEE-SS-TT---TTTTSHHHHHHHHHHH-HHTT-EE--EE
T ss_pred HHHHHcCCeEECCC---CC----CCCHHHHHHhcCCCeEEEEeccCCcc---cccCCHHHHHHHHHHH-HHCCCeE--EE
Confidence 33456788877743 32 24566544433322334433322111 1235666665544433 4556542 13
Q ss_pred eeecC----CCCCCcHHHHHHH--HHHHHHcCCccEEEecCcCHHHHHHHHHcCCCEEEEee
Q 024802 198 QFHWW----DYSNPGYLDALNH--LTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQV 253 (262)
Q Consensus 198 ~lH~p----d~~~~~~~e~~~a--L~~l~~~G~ir~IGvSn~~~~~l~~~~~~g~~~~~~Q~ 253 (262)
=+|.- ||.....-..|+. +++|.++ |.+|+.+.|.++.+.|+.|+.+|+
T Consensus 77 dfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~-------v~~yT~~vl~~l~~~G~~pd~VQV 131 (332)
T PF07745_consen 77 DFHYSDFWADPGKQNKPAAWANLSFDQLAKA-------VYDYTKDVLQALKAAGVTPDMVQV 131 (332)
T ss_dssp EE-SSSS--BTTB-B--TTCTSSSHHHHHHH-------HHHHHHHHHHHHHHTT--ESEEEE
T ss_pred eecccCCCCCCCCCCCCccCCCCCHHHHHHH-------HHHHHHHHHHHHHHCCCCccEEEe
Confidence 34542 2321111123332 2444444 778888888889888999999997
No 137
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=24.09 E-value=79 Score=28.10 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=32.3
Q ss_pred cCCCccccCceeeccccCCC--CCCCCCHHHHHHHHHHH----HHcCCCEEecCC
Q 024802 84 NGNDSLEICRVLNGMWQTSG--GWGRIDRDDAVDAMLRY----ADAGLTTFDMAD 132 (262)
Q Consensus 84 lG~tG~~Vs~lGlGt~~~~~--~~~~~~~~~~~~~l~~A----~d~Gi~~fDTA~ 132 (262)
+-.+|+.+|.+||..-+-.. +-++...+++.++++.| .+.|||.|--|.
T Consensus 63 i~etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAG 117 (287)
T COG3623 63 IQETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAG 117 (287)
T ss_pred HHHhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeecc
Confidence 44678999999998754321 11123345666666655 589999998884
No 138
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=24.05 E-value=4.3e+02 Score=24.55 Aligned_cols=77 Identities=13% Similarity=0.143 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCC-ccEEEecCcCHHHHHHHHHcCCCEEE
Q 024802 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 250 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~-ir~IGvSn~~~~~l~~~~~~g~~~~~ 250 (262)
.++.++..+ +-+.|.++|+++|++- +|... ++-++.++.+.+.+. .+-.+.+..+.+.++.+.+.|++...
T Consensus 18 ~~s~~~k~~-ia~~L~~~Gv~~IEvG---~p~~~----~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (363)
T TIGR02090 18 SLTVEQKVE-IARKLDELGVDVIEAG---FPIAS----EGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIH 89 (363)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEe---CCCCC----hHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEE
Confidence 345555444 5556999999999975 34221 223566666665554 55556677788888888887765433
Q ss_pred Eeeccc
Q 024802 251 NQVWHS 256 (262)
Q Consensus 251 ~Q~~ys 256 (262)
+-+.-|
T Consensus 90 i~~~~S 95 (363)
T TIGR02090 90 TFIATS 95 (363)
T ss_pred EEEcCC
Confidence 333333
No 139
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=23.95 E-value=4e+02 Score=23.76 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=35.8
Q ss_pred ccceeeeecCCCCCC--cHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHH
Q 024802 193 CLDMLQFHWWDYSNP--GYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 242 (262)
Q Consensus 193 ~iDL~~lH~pd~~~~--~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~ 242 (262)
..||+++.-|....+ .-.+.++-|.+++++|+ .|=+..|+...+.+..
T Consensus 157 ~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~--tIl~vtHDL~~v~~~~ 206 (254)
T COG1121 157 NPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK--TVLMVTHDLGLVMAYF 206 (254)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC--EEEEEeCCcHHhHhhC
Confidence 468888887754433 13468899999999988 5888889988877654
No 140
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=23.76 E-value=5.3e+02 Score=23.05 Aligned_cols=69 Identities=10% Similarity=0.016 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHH---HcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCc----CHHHHHHHHH
Q 024802 173 MTSSIVRESIDVSRR---RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF----DTERLRIILE 243 (262)
Q Consensus 173 ~s~~~i~~al~~SL~---rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~----~~~~l~~~~~ 243 (262)
.++++..+.+.+.++ ..|. .+.+..-++..+...+.+...+..+++.+.| +..|.++.- +|+++.++.+
T Consensus 108 ~t~~e~l~~~~~~i~~a~~~G~-~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~l~~ 183 (280)
T cd07945 108 KTPEEHFADIREVIEYAIKNGI-EVNIYLEDWSNGMRDSPDYVFQLVDFLSDLP-IKRIMLPDTLGILSPFETYTYIS 183 (280)
T ss_pred cCHHHHHHHHHHHHHHHHhCCC-EEEEEEEeCCCCCcCCHHHHHHHHHHHHHcC-CCEEEecCCCCCCCHHHHHHHHH
Confidence 355665555555554 3343 4666666543231223667777778888887 677888864 6777777654
No 141
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=23.68 E-value=2.4e+02 Score=22.34 Aligned_cols=54 Identities=15% Similarity=0.192 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC
Q 024802 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN 232 (262)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn 232 (262)
.+.+.+...+++..+.- +... +.+ ..|.+.+ ++.+.+.|..+++.|. ..||+..
T Consensus 81 v~~~~L~~~L~~~~~~~--~~~~-V~I-~aD~~~~-~~~vv~vmd~l~~aG~-~~v~l~t 134 (141)
T PRK11267 81 VTDETMITALDALTEGK--KDTT-IFF-RADKTVD-YETLMKVMDTLHQAGY-LKIGLVG 134 (141)
T ss_pred ccHHHHHHHHHHHHhcC--CCce-EEE-EcCCCCC-HHHHHHHHHHHHHcCC-CeEEEEe
Confidence 35555555555544322 1122 223 4566666 8999999999999995 4688865
No 142
>PRK08609 hypothetical protein; Provisional
Probab=23.65 E-value=3.7e+02 Score=26.77 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCCEEecCCCC
Q 024802 113 AVDAMLRYADAGLTTFDMADHY 134 (262)
Q Consensus 113 ~~~~l~~A~d~Gi~~fDTA~~Y 134 (262)
..++++.|.+.|++.|=.++++
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~ 372 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHS 372 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCC
Confidence 4559999999999999888775
No 143
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=23.51 E-value=4.4e+02 Score=22.03 Aligned_cols=80 Identities=8% Similarity=-0.079 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCc-cEEEecCcCHHHHHHHHHc-CCCEEE
Q 024802 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILEN-GIPVVS 250 (262)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~i-r~IGvSn~~~~~l~~~~~~-g~~~~~ 250 (262)
+.--.+++.|.+-|+..|.+.+|+=- +..++ .++-+.-..+.+.+.+|.. +.|-+|....-.-..+.+. |+.-..
T Consensus 9 haG~~lK~~l~~~L~~~G~eV~D~G~-~~~~~--~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~siaANK~~GIRAA~ 85 (171)
T PRK12615 9 HIVTNEKMAVSDFLKSKGYDVIDCGT-YDHTR--THYPIFGKKVGEAVVNGQADLGVCICGTGVGINNAVNKVPGIRSAL 85 (171)
T ss_pred chhHHHHHHHHHHHHHCCCEEEEcCC-CCCCC--CChHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHhcCCCeEEEE
Confidence 44566899999999999998888642 22222 3366777788888888887 7788888776655555543 554444
Q ss_pred Eeecc
Q 024802 251 NQVWH 255 (262)
Q Consensus 251 ~Q~~y 255 (262)
+.-+|
T Consensus 86 ~~d~~ 90 (171)
T PRK12615 86 VRDMT 90 (171)
T ss_pred eCCHH
Confidence 44443
No 144
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=23.29 E-value=1.7e+02 Score=22.09 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCC
Q 024802 179 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK 224 (262)
Q Consensus 179 ~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ 224 (262)
+..+++.|+.+. ..|.+++++.+.-.-...+.+..++.+.+.|.
T Consensus 42 R~~~~~ll~~~~--~~d~lvv~~~dRl~R~~~e~~~~~~~l~~~gi 85 (126)
T cd03768 42 RPELQKLLEDLR--EGDTLVVTKLDRLGRSTKDLLEIVEELREKGV 85 (126)
T ss_pred CHHHHHHHHhCc--CCCEEEEEEcchhcCcHHHHHHHHHHHHHCCC
Confidence 445666666665 57888888887655556778888888888774
No 145
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=23.27 E-value=3.5e+02 Score=26.82 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHH
Q 024802 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 242 (262)
Q Consensus 174 s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~ 242 (262)
......+++.+.|+-||+++ |-.+. ....++.-.+..++|.++|++ =+|..+.+++++..
T Consensus 58 ~~~e~~~~I~~dL~WLGl~w-D~~~~-----qSdr~~~y~~~a~~Li~~G~A---Y~C~cs~eel~~~r 117 (523)
T PLN03233 58 EKAEFEESIIEDLGKIEIKP-DSVSF-----TSDYFEPIRCYAIILIEEGLA---YMDDTPQEEMKKER 117 (523)
T ss_pred cchHHHHHHHHHHHHhCCCC-CCCcc-----ccccHHHHHHHHHHHHHcCCe---EecCCCHHHHHHHH
Confidence 44567788999999999986 52221 223366778888999999995 35788888887664
No 146
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=23.17 E-value=4.6e+02 Score=22.12 Aligned_cols=70 Identities=11% Similarity=0.196 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHc---CCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCH----HHHHHHHHcCCCE
Q 024802 176 SIVRESIDVSRRRM---DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT----ERLRIILENGIPV 248 (262)
Q Consensus 176 ~~i~~al~~SL~rL---g~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~----~~l~~~~~~g~~~ 248 (262)
..+.+.+++.++++ |. .++++.....+ +.+...+.++++..+ ++..|=++..+. +.+..+.+.++|+
T Consensus 15 ~~~~~~i~~~~~~~~~~g~-~~~l~i~~~~~----~~~~~~~~~~~~~~~-~vdgiIi~~~~~~~~~~~l~~~~~~~iPv 88 (272)
T cd06300 15 AQMLDEFKAQAKELKKAGL-ISEFIVTSADG----DVAQQIADIRNLIAQ-GVDAIIINPASPTALNPVIEEACEAGIPV 88 (272)
T ss_pred HHHHHHHHHHHHhhhccCC-eeEEEEecCCC----CHHHHHHHHHHHHHc-CCCEEEEeCCChhhhHHHHHHHHHCCCeE
Confidence 45677777777777 52 14555543221 134456667777776 566665554432 2345555556665
Q ss_pred EEE
Q 024802 249 VSN 251 (262)
Q Consensus 249 ~~~ 251 (262)
.++
T Consensus 89 v~~ 91 (272)
T cd06300 89 VSF 91 (272)
T ss_pred EEE
Confidence 543
No 147
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=22.87 E-value=4.4e+02 Score=25.00 Aligned_cols=61 Identities=15% Similarity=-0.067 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCC-------CcHH---HHH-HHHHHHHHcCCccEEEecCcCH
Q 024802 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-------PGYL---DAL-NHLTDLKEEGKIKTVALTNFDT 235 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~-------~~~~---e~~-~aL~~l~~~G~ir~IGvSn~~~ 235 (262)
..+.+.+++.++..+ +|+.+++.+|.+.-. +.+ ++.+ +.+ .+.+.|.+.|.. .+++|||.-
T Consensus 204 ~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~-~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~-~yei~~far 275 (430)
T PRK08208 204 GQTHASWMESLDQAL-VYRPEELFLYPLYVR-PLTGLGRRARAWDDQRLSLYRLARDLLLEAGYT-QTSMRMFRR 275 (430)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEcccccc-CCCccchhcCCCHHHHHHHHHHHHHHHHHcCCe-EEeecceec
Confidence 357788888777766 588888888876531 111 1111 122 344667777864 588888864
No 148
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=22.69 E-value=1.7e+02 Score=23.90 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCCc----cceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHc
Q 024802 178 VRESIDVSRRRMDVPC----LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 244 (262)
Q Consensus 178 i~~al~~SL~rLg~d~----iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~ 244 (262)
.++.++..++++|.+. .+.+.-.+... .+ +.++.+.|+.|++.| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~-~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAYLRL-PP-HPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-CC-CCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 3566677777777652 12221111111 11 345777889999988 45566888888777776653
No 149
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=22.68 E-value=1.9e+02 Score=24.78 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=71.2
Q ss_pred HHHHHHHHcCCCEEecCCCCCChhHHHHHHHhhccccCCCceeeeEEeecccCCCCCCCCHHHHHHHH-----------H
Q 024802 115 DAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESI-----------D 183 (262)
Q Consensus 115 ~~l~~A~d~Gi~~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~s~~~i~~al-----------~ 183 (262)
+++...++-|-+.+|-.--.| + +-+.|++. +. + +... ...+++.+.+++ +
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG--~--LL~~L~~~---k~--v--~g~G--------vEid~~~v~~cv~rGv~Viq~Dld 65 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG--E--LLAYLKDE---KQ--V--DGYG--------VEIDPDNVAACVARGVSVIQGDLD 65 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch--H--HHHHHHHh---cC--C--eEEE--------EecCHHHHHHHHHcCCCEEECCHH
Confidence 456667778888888664333 2 23444431 11 0 0000 123445555554 4
Q ss_pred HHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHH-cCCCEEEEeecccccc
Q 024802 184 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-NGIPVVSNQVWHSNGW 259 (262)
Q Consensus 184 ~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~-~g~~~~~~Q~~ys~~~ 259 (262)
+-|....-+..|.+.+..-= .......+.|+++.+-|+---|++.||.-|..+.-+- .|--|..-+++|+-++
T Consensus 66 ~gL~~f~d~sFD~VIlsqtL---Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYd 139 (193)
T PF07021_consen 66 EGLADFPDQSFDYVILSQTL---QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYD 139 (193)
T ss_pred HhHhhCCCCCccEEehHhHH---HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccC
Confidence 45555555556666554311 1122344556788888988889999999998876554 5666777788887554
No 150
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=22.67 E-value=5.8e+02 Score=23.13 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCC--------------------------ccceeeeecCCCC-CCcHHH-HHHHHHHHHHcC
Q 024802 172 KMTSSIVRESIDVSRRRMDVP--------------------------CLDMLQFHWWDYS-NPGYLD-ALNHLTDLKEEG 223 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d--------------------------~iDL~~lH~pd~~-~~~~~e-~~~aL~~l~~~G 223 (262)
......+++.++..|+|+++. ..||+.+.-|... +|-..+ .-++..+++++|
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence 456778888889999888642 1233333333221 121233 446668999999
Q ss_pred CccEEEecCcCHHHHHHHHH
Q 024802 224 KIKTVALTNFDTERLRIILE 243 (262)
Q Consensus 224 ~ir~IGvSn~~~~~l~~~~~ 243 (262)
. .|=+|+|.-++++++.+
T Consensus 181 a--tIifSsH~Me~vEeLCD 198 (300)
T COG4152 181 A--TIIFSSHRMEHVEELCD 198 (300)
T ss_pred C--EEEEecchHHHHHHHhh
Confidence 9 69999999999999876
No 151
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=22.64 E-value=3.3e+02 Score=25.53 Aligned_cols=61 Identities=18% Similarity=0.179 Sum_probs=41.9
Q ss_pred eeeecCCCC-----------CCcHHHHHHHHHHHHHcCCccEEEe-------cCcCHHHHHHHHH--cCCCEEEEeeccc
Q 024802 197 LQFHWWDYS-----------NPGYLDALNHLTDLKEEGKIKTVAL-------TNFDTERLRIILE--NGIPVVSNQVWHS 256 (262)
Q Consensus 197 ~~lH~pd~~-----------~~~~~e~~~aL~~l~~~G~ir~IGv-------Sn~~~~~l~~~~~--~g~~~~~~Q~~ys 256 (262)
+.+|.|+.. .+ +++.+++.+...+... +.|-+ -|-+.++.+++.+ .+++..+|-++||
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~-~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~N 293 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYP-IEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYN 293 (349)
T ss_pred EecCCCCHHHHhhhhccccCCC-HHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecC
Confidence 568887532 23 6778888877776655 44443 2556777777766 3678899999999
Q ss_pred ccc
Q 024802 257 NGW 259 (262)
Q Consensus 257 ~~~ 259 (262)
|..
T Consensus 294 p~~ 296 (349)
T COG0820 294 PVP 296 (349)
T ss_pred CCC
Confidence 975
No 152
>PRK13938 phosphoheptose isomerase; Provisional
Probab=22.52 E-value=4.8e+02 Score=22.05 Aligned_cols=55 Identities=16% Similarity=0.013 Sum_probs=39.5
Q ss_pred HHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHH
Q 024802 183 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 242 (262)
Q Consensus 183 ~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~ 242 (262)
...+.... +.=|++.+-..... ..+++++++.+++.| ++-|++++.....+.++.
T Consensus 104 ~~~~~~~~-~~~DllI~iS~SG~---t~~vi~a~~~Ak~~G-~~vI~iT~~~~s~La~~a 158 (196)
T PRK13938 104 ARALEGSA-RPGDTLFAISTSGN---SMSVLRAAKTARELG-VTVVAMTGESGGQLAEFA 158 (196)
T ss_pred HHHHHhcC-CCCCEEEEEcCCCC---CHHHHHHHHHHHHCC-CEEEEEeCCCCChhhhhC
Confidence 34444443 33588888776554 347889999999998 578999998887777654
No 153
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=22.51 E-value=5.3e+02 Score=22.62 Aligned_cols=7 Identities=43% Similarity=0.776 Sum_probs=3.6
Q ss_pred HHHHHcC
Q 024802 217 TDLKEEG 223 (262)
Q Consensus 217 ~~l~~~G 223 (262)
+.|++.|
T Consensus 127 ~~Lk~aG 133 (296)
T TIGR00433 127 KRLKDAG 133 (296)
T ss_pred HHHHHcC
Confidence 4455555
No 154
>PF00491 Arginase: Arginase family; InterPro: IPR006035 The ureohydrolase superfamily includes arginase (3.5.3.1 from EC), agmatinase (3.5.3.11 from EC), formiminoglutamase (3.5.3.8 from EC) and proclavaminate amidinohydrolase (3.5.3.22 from EC) []. These enzymes share a 3-layer alpha-beta-alpha structure [, , ], and play important roles in arginine/agmatine metabolism, the urea cycle, histidine degradation, and other pathways. Arginase, which catalyses the conversion of arginine to urea and ornithine, is one of the five members of the urea cycle enzymes that convert ammonia to urea as the principal product of nitrogen excretion []. There are several arginase isozymes that differ in catalytic, molecular and immunological properties. Deficiency in the liver isozyme leads to argininemia, which is usually associated with hyperammonemia. Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine. In addition, agmatine may play an important regulatory role in mammals. Formiminoglutamase catalyses the fourth step in histidine degradation, acting to hydrolyse N-formimidoyl-L-glutamate to L-glutamate and formamide. Proclavaminate amidinohydrolase is involved in clavulanic acid biosynthesis. Clavulanic acid acts as an inhibitor of a wide range of beta-lactamase enzymes that are used by various microorganisms to resist beta-lactam antibiotics. As a result, this enzyme improves the effectiveness of beta-lactamase antibiotics [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0046872 metal ion binding; PDB: 4DZ4_A 3SL0_A 3MMR_A 3SL1_A 2EF5_D 2EIV_K 2EF4_A 3NIO_F 3THH_A 1WVA_A ....
Probab=22.49 E-value=2.4e+02 Score=24.75 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCCccceeeeec----------C-----CCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHH
Q 024802 181 SIDVSRRRMDVPCLDMLQFHW----------W-----DYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTE 236 (262)
Q Consensus 181 al~~SL~rLg~d~iDL~~lH~----------p-----d~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~ 236 (262)
.+++.++.++- ..|-+|+|. | .+.-....++.+.++.+.+.++|..+.|+.++|.
T Consensus 187 ~~~~~~~~~~~-~~~~vylsiDiDvlDp~~~pg~~~p~pgGl~~~e~~~~l~~l~~~~~vvg~di~E~~P~ 256 (277)
T PF00491_consen 187 VLEEILEALGS-GTDPVYLSIDIDVLDPAFAPGVGTPEPGGLSPRELLQLLRALARSGKVVGLDIVEYNPD 256 (277)
T ss_dssp HHHHHHHHHTT-STSEEEEEEEGGGBBTTTSTSBSS-BSS-B-HHHHHHHHHHHHHHSEEEEEEEE-B-GG
T ss_pred HHHHHHHHHhc-CCCeEEEEEehhhcChhhCCCcCCCcCCCCCHHHHHHHHHHHcccCCeEEEEEEEECCC
Confidence 46777777742 345666774 1 1111237889999999989999999999999874
No 155
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=22.34 E-value=4e+02 Score=21.08 Aligned_cols=62 Identities=11% Similarity=-0.023 Sum_probs=40.1
Q ss_pred eEEeecccCCCCCCCCHHHHHHHHHHHHHHcC--CCccceeeeecCCCCCCcHHHHHHHHHHHHHc
Q 024802 159 KVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (262)
Q Consensus 159 ~v~i~tK~~~~~~~~s~~~i~~al~~SL~rLg--~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~ 222 (262)
.+.++.|.... ...+..+++.+.++.+... ....|++++-.+.....++.+..+.|..+.+.
T Consensus 49 G~~VsKK~~g~--AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 49 GLVIGKKSVKL--AVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWKR 112 (130)
T ss_pred EEEEecccCcc--HhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 45555553222 3466777777777776442 34689999998876666677777777666544
No 156
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=22.30 E-value=2.8e+02 Score=22.44 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHH--cCCccEEEecCcCHHHHHHHHHc-CCCE
Q 024802 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILEN-GIPV 248 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~--~G~ir~IGvSn~~~~~l~~~~~~-g~~~ 248 (262)
..+-+++.+.+++--+.+|++ ++.+|=.. -.+.++++.+..+ +|.|-.=|--+|+.-.+..+++. ++|
T Consensus 23 ~~tl~di~~~~~~~a~~~g~~-v~~~QSN~-------EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P- 93 (141)
T TIGR01088 23 SQTLEEIVEIIETFAAQLNVE-LEFFQSNS-------EGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLP- 93 (141)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEeeCc-------HHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCC-
Confidence 457789999999999999975 67666321 3567888887754 35555555556666667777654 444
Q ss_pred EEEeecc
Q 024802 249 VSNQVWH 255 (262)
Q Consensus 249 ~~~Q~~y 255 (262)
++.+..
T Consensus 94 -~vEVHi 99 (141)
T TIGR01088 94 -VVEVHL 99 (141)
T ss_pred -EEEEEc
Confidence 344444
No 157
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=22.25 E-value=1.2e+02 Score=27.23 Aligned_cols=48 Identities=15% Similarity=0.011 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHcCCCccc--eeeeecCCCCCCcHHHHHHHHHHHHHcCCccE
Q 024802 176 SIVRESIDVSRRRMDVPCLD--MLQFHWWDYSNPGYLDALNHLTDLKEEGKIKT 227 (262)
Q Consensus 176 ~~i~~al~~SL~rLg~d~iD--L~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~ 227 (262)
+...+.+++.+++||++ .| .++.-. ++ .-.+.+++.+++|+++|.|-.
T Consensus 82 ~~~~~~~~~~l~~lgI~-~Dw~~~~~T~-~~--~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 82 EEMSGEHKEDFRRLGIS-YDWSDEYITT-EP--EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHhCcc-ccCCCCeECC-CH--HHHHHHHHHHHHHHHCCCEEe
Confidence 45677789999999986 34 333211 11 124668999999999999865
No 158
>PRK07945 hypothetical protein; Provisional
Probab=22.13 E-value=6.2e+02 Score=23.24 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHcCCCEEecCCCC
Q 024802 111 DDAVDAMLRYADAGLTTFDMADHY 134 (262)
Q Consensus 111 ~~~~~~l~~A~d~Gi~~fDTA~~Y 134 (262)
....+.+++|.+.|+..+=.+++.
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~ 134 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHS 134 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCC
Confidence 346789999999999988666663
No 159
>PRK11024 colicin uptake protein TolR; Provisional
Probab=22.05 E-value=2.5e+02 Score=22.24 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEec
Q 024802 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT 231 (262)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvS 231 (262)
.+.+.+...++..+..- -|...+=..|.+.+ ++.+.+.|+.+++.|. ..+++.
T Consensus 85 v~~~~L~~~l~~~~~~~----~~~~V~i~aD~~~~-~~~vv~vmd~~k~aG~-~~v~l~ 137 (141)
T PRK11024 85 LPEEQVVAEAKSRFKAN----PKTVFLIGGAKDVP-YDEIIKALNLLHSAGV-KSVGLM 137 (141)
T ss_pred cCHHHHHHHHHHHHhhC----CCceEEEEcCCCCC-HHHHHHHHHHHHHcCC-CeEEEE
Confidence 35555665555554432 23333334666667 8999999999999994 457764
No 160
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=21.97 E-value=2.4e+02 Score=28.09 Aligned_cols=41 Identities=27% Similarity=0.405 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHc-CCCEE
Q 024802 209 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVV 249 (262)
Q Consensus 209 ~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~-g~~~~ 249 (262)
++++.+.+.+.++..+|+.||+=.+...++..+++. |++++
T Consensus 412 ~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv 453 (546)
T COG4626 412 YAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVV 453 (546)
T ss_pred HHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCcee
Confidence 667999999999999999999999999999888765 77644
No 161
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=21.82 E-value=3.4e+02 Score=23.81 Aligned_cols=65 Identities=22% Similarity=0.140 Sum_probs=44.0
Q ss_pred CCccceeeeecCC----------CCCCcHHH-HHHHHHHHHHcCCccEEEecCcCHHHHHHHHHcCCCEEEEeecccc
Q 024802 191 VPCLDMLQFHWWD----------YSNPGYLD-ALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVWHSN 257 (262)
Q Consensus 191 ~d~iDL~~lH~pd----------~~~~~~~e-~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g~~~~~~Q~~ys~ 257 (262)
++.||.+++.--| +..+++.+ .....+.++..|+ ..|+...+++..+++.+.|+.+.+...+...
T Consensus 161 ~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~--~~Gi~~~~~~~~~~~~~~G~~~~~~~~D~~~ 236 (249)
T TIGR02311 161 VEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGK--AAGILTADPKLARQYLKLGALFVAVGVDTTL 236 (249)
T ss_pred CCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCC--ceeecCCCHHHHHHHHHcCCCEEEEchHHHH
Confidence 6789998887521 11221222 2333567778888 5788888899999999989888777665544
No 162
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=21.78 E-value=1.2e+02 Score=26.48 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCC
Q 024802 177 IVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK 224 (262)
Q Consensus 177 ~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ 224 (262)
.....++..-+-.+...|+-+++-..+... ++.|.+.-.++|.+.|.
T Consensus 77 yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~-sYnEp~tM~kdL~~~GV 123 (235)
T COG2949 77 YYTYRIDAAIALYKAGKVNYLLLSGDNATV-SYNEPRTMRKDLIAAGV 123 (235)
T ss_pred hHHHHHHHHHHHHhcCCeeEEEEecCCCcc-cccchHHHHHHHHHcCC
Confidence 345555555555555567777665544333 36667777777777775
No 163
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=21.69 E-value=4.8e+02 Score=21.80 Aligned_cols=81 Identities=9% Similarity=-0.031 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCc-cEEEecCcCHHHHHHHHHc-CCCEE
Q 024802 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILEN-GIPVV 249 (262)
Q Consensus 172 ~~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~i-r~IGvSn~~~~~l~~~~~~-g~~~~ 249 (262)
++.--.+++.|.+-|+..|-+.+|+=- +..++ .++-+.-..+.+.+.+|.. +.|-+|....-.-..+.+. |+.-.
T Consensus 8 DhaG~~lK~~l~~~L~~~G~eV~D~G~-~~~~~--~dYpd~a~~va~~V~~g~~~~GIliCGTGiG~siaANKv~GIRAA 84 (171)
T TIGR01119 8 DHIVTDVKMEVSEFLKSKGYEVLDVGT-YDFTR--THYPIFGKKVGEAVVSGEADLGVCICGTGVGINNAVNKVPGVRSA 84 (171)
T ss_pred CCchHHHHHHHHHHHHHCCCEEEEeCC-CCCCC--CChHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHhcCCCeEEE
Confidence 345567899999999999988888642 22222 3366777778888888876 6788888776555555543 45444
Q ss_pred EEeecc
Q 024802 250 SNQVWH 255 (262)
Q Consensus 250 ~~Q~~y 255 (262)
.+.-+|
T Consensus 85 l~~d~~ 90 (171)
T TIGR01119 85 LVRDMT 90 (171)
T ss_pred EeCCHH
Confidence 444443
No 164
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.45 E-value=1.8e+02 Score=21.79 Aligned_cols=47 Identities=28% Similarity=0.115 Sum_probs=34.0
Q ss_pred ccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHH
Q 024802 193 CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE 243 (262)
Q Consensus 193 ~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~ 243 (262)
.=|++.+=..... ..++.++++.+++.| ++-|++++.....+.+..+
T Consensus 46 ~~d~~I~iS~sG~---t~e~~~~~~~a~~~g-~~vi~iT~~~~s~la~~ad 92 (126)
T cd05008 46 EDTLVIAISQSGE---TADTLAALRLAKEKG-AKTVAITNVVGSTLAREAD 92 (126)
T ss_pred CCcEEEEEeCCcC---CHHHHHHHHHHHHcC-CeEEEEECCCCChHHHhCC
Confidence 3466555444333 457999999999998 7889999988777777654
No 165
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=20.92 E-value=1.4e+02 Score=27.19 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHcCCCccceeeeecCCCCCC-cHHHHHHHHHHHHHcCCc
Q 024802 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP-GYLDALNHLTDLKEEGKI 225 (262)
Q Consensus 176 ~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~-~~~e~~~aL~~l~~~G~i 225 (262)
+...+.+++.+++||++ .|.+.-. ..+ ....+.+.+++|+++|.+
T Consensus 69 ~~~~~~~~~~l~~LgI~-~D~~~~t----t~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 69 DKYHEIFKDLFKWLNIS-FDYFIRT----TSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHcCCc-CCCCeeC----CCHHHHHHHHHHHHHHHHCCCE
Confidence 45677889999999996 5865322 111 134578888999999998
No 166
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=20.89 E-value=4.5e+02 Score=26.34 Aligned_cols=61 Identities=15% Similarity=0.100 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHHcC
Q 024802 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 245 (262)
Q Consensus 176 ~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~~g 245 (262)
....+++.+.|+.||+++ |-.+ .....++.-.+.+++|.++|++ | +|..+.+++++....|
T Consensus 152 ~e~~~~I~edL~wLGl~w-D~~~-----~qSdr~~~y~~~a~~Li~~G~A-Y--~C~cs~ee~~~~r~~g 212 (567)
T PRK04156 152 PEAYDMILEDLKWLGVKW-DEVV-----IQSDRLEIYYEYARKLIEMGGA-Y--VCTCDPEEFKELRDAG 212 (567)
T ss_pred HHHHHHHHHHHHHcCCCC-CCcc-----CcccCHHHHHHHHHHHHHcCCC-c--cCCCCHHHHHHHHhcC
Confidence 344578899999999976 5322 1223367788899999999997 2 6777788887665433
No 167
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=20.72 E-value=6.2e+02 Score=22.74 Aligned_cols=36 Identities=6% Similarity=0.157 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEecC-CCCCChh-HHHHHH
Q 024802 109 DRDDAVDAMLRYADAGLTTFDMA-DHYGPAE-DLYGIF 144 (262)
Q Consensus 109 ~~~~~~~~l~~A~d~Gi~~fDTA-~~YG~sE-~~lG~a 144 (262)
+.++-.++++.-.+.||+.++.. +.+++.| +.+.+.
T Consensus 21 s~~~Ki~ia~~L~~~Gv~~IE~gfP~~~~~e~e~~~~i 58 (284)
T cd07942 21 SVEQKLRFFKLLVKIGFKEIEVGFPSASQTDFDFVREL 58 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Confidence 33788888888889999999986 4445555 444433
No 168
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=20.61 E-value=7.5e+02 Score=23.60 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceeee-ecCC----------CCCCcHHH---HH-HHHHHHHHcCCccEEEecCcCH
Q 024802 173 MTSSIVRESIDVSRRRMDVPCLDMLQF-HWWD----------YSNPGYLD---AL-NHLTDLKEEGKIKTVALTNFDT 235 (262)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~d~iDL~~l-H~pd----------~~~~~~~e---~~-~aL~~l~~~G~ir~IGvSn~~~ 235 (262)
.+.+.+++.++..++ |+.+++.+|.+ +.|. ...++.++ .+ .+.+.|.+.|. ..+++|||.-
T Consensus 215 qt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 215 QTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 488888888886554 89999999866 2221 01122222 22 34456677787 5699999974
No 169
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=20.47 E-value=4.6e+02 Score=21.16 Aligned_cols=66 Identities=5% Similarity=0.094 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCc-cEEEecCcCHHHHHHHHH
Q 024802 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILE 243 (262)
Q Consensus 173 ~s~~~i~~al~~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~i-r~IGvSn~~~~~l~~~~~ 243 (262)
+.--.+++.|.+-|+..|-+.+|+=- +.. .++-+.-..+.+.+.+|.. +.|-+|....-.-..+.+
T Consensus 9 haG~~lK~~l~~~L~~~G~eV~D~G~----~~~-~dYpd~a~~va~~V~~~~~~~GIliCGTGiG~siaANK 75 (142)
T PRK08621 9 KAGFELKEVVKDYLEDNKYEVVDVTE----EGA-EDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGSFMVATK 75 (142)
T ss_pred cchHHHHHHHHHHHHHCCCEEEECCC----CCC-CCcHHHHHHHHHHHHcCCCceEEEEcCCChhhhhhhhc
Confidence 44567899999999999988888843 222 2366777778888888886 778788766554444433
No 170
>PF09639 YjcQ: YjcQ protein; InterPro: IPR018597 YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is found in bacteria and also in the Lactococcus phage Tuc2009. In bacteria it appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown []. However, it is thought to be the major head protein in viruses [] and is found in prophage in bacteria. ; PDB: 2HGC_A.
Probab=20.43 E-value=93 Score=22.76 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHcCCccEEEecC
Q 024802 210 LDALNHLTDLKEEGKIKTVALTN 232 (262)
Q Consensus 210 ~e~~~aL~~l~~~G~ir~IGvSn 232 (262)
....+.|..|+++|.|..+-+.+
T Consensus 25 ~~~~~il~~L~d~GyI~G~~~~~ 47 (88)
T PF09639_consen 25 SYWSDILRMLQDEGYIKGVSVVR 47 (88)
T ss_dssp HHHHHHHHHHHHHTSEE--EESS
T ss_pred HHHHHHHHHHHHCCCccceEEEe
Confidence 45778899999999998666654
No 171
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=20.42 E-value=2e+02 Score=26.61 Aligned_cols=42 Identities=24% Similarity=0.118 Sum_probs=27.7
Q ss_pred HHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEe
Q 024802 184 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVAL 230 (262)
Q Consensus 184 ~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGv 230 (262)
..+++||+| +|=+++..|+. .+++++..++|.+.|.+.-|=|
T Consensus 96 ~~a~~lGvd-l~rllv~~P~~----~E~al~~~e~lirsg~~~lVVv 137 (322)
T PF00154_consen 96 EYAESLGVD-LDRLLVVQPDT----GEQALWIAEQLIRSGAVDLVVV 137 (322)
T ss_dssp HHHHHTT---GGGEEEEE-SS----HHHHHHHHHHHHHTTSESEEEE
T ss_pred hHHHhcCcc-ccceEEecCCc----HHHHHHHHHHHhhcccccEEEE
Confidence 345688998 44455555653 5778899999999999876643
No 172
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.39 E-value=1.7e+02 Score=22.11 Aligned_cols=46 Identities=22% Similarity=0.135 Sum_probs=33.9
Q ss_pred cceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHH
Q 024802 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE 243 (262)
Q Consensus 194 iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~ 243 (262)
=|++.+=.-... ..++.++++.+++.| ++-|++++.....+.+..+
T Consensus 48 ~d~vi~iS~sG~---t~~~~~~~~~a~~~g-~~vi~iT~~~~s~la~~ad 93 (128)
T cd05014 48 GDVVIAISNSGE---TDELLNLLPHLKRRG-APIIAITGNPNSTLAKLSD 93 (128)
T ss_pred CCEEEEEeCCCC---CHHHHHHHHHHHHCC-CeEEEEeCCCCCchhhhCC
Confidence 366655443332 457889999999997 8899999998888877654
No 173
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.16 E-value=1.9e+02 Score=21.96 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=33.1
Q ss_pred ceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHH
Q 024802 195 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE 243 (262)
Q Consensus 195 DL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~ 243 (262)
|++..=....+ ..++.++++.+++.| ++-|++++.....+.+..+
T Consensus 49 dl~I~iS~SG~---t~~~~~~~~~a~~~g-~~vi~iT~~~~s~la~~ad 93 (120)
T cd05710 49 SVVILASHSGN---TKETVAAAKFAKEKG-ATVIGLTDDEDSPLAKLAD 93 (120)
T ss_pred cEEEEEeCCCC---ChHHHHHHHHHHHcC-CeEEEEECCCCCcHHHhCC
Confidence 66555444333 457899999999998 6889999988777776544
No 174
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=20.12 E-value=2.9e+02 Score=24.38 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=42.7
Q ss_pred HHHHHcCCCccceeeeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHHH
Q 024802 184 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE 243 (262)
Q Consensus 184 ~SL~rLg~d~iDL~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvSn~~~~~l~~~~~ 243 (262)
+.+...+...=|++..-..+..++ +++++++.+++.| +.-|++++.....+.++.+
T Consensus 109 ~~l~a~~l~~~DvvI~IS~SG~T~---~vi~al~~Ak~~G-a~~I~It~~~~s~L~~~aD 164 (257)
T cd05007 109 ADLQAINLTERDVVIGIAASGRTP---YVLGALRYARARG-ALTIGIACNPGSPLLQLAD 164 (257)
T ss_pred HHHHHcCCCCCCEEEEEeCCCCCH---HHHHHHHHHHHCC-CeEEEEECCCCChhHHhCC
Confidence 344456666779998887766555 6899999999998 7789999998888777543
No 175
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=20.07 E-value=33 Score=26.00 Aligned_cols=7 Identities=43% Similarity=1.023 Sum_probs=5.5
Q ss_pred ccccccC
Q 024802 4 MHCHFTG 10 (262)
Q Consensus 4 ~~~~~~~ 10 (262)
.||||||
T Consensus 23 vt~hYtg 29 (108)
T KOG0544|consen 23 VTVHYTG 29 (108)
T ss_pred EEEEEEe
Confidence 5788886
No 176
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=20.03 E-value=7.6e+02 Score=23.45 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=33.5
Q ss_pred Cccceeeeec-CCCCCCcHHHHHHHHHHHHHcCCccEEEec-CcCHHHHHHHHHcCCCEE
Q 024802 192 PCLDMLQFHW-WDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVV 249 (262)
Q Consensus 192 d~iDL~~lH~-pd~~~~~~~e~~~aL~~l~~~G~ir~IGvS-n~~~~~l~~~~~~g~~~~ 249 (262)
..+|++.+|. .++.. ....|+.+.++++.+.=..|.++ +-+++.+.++.+.|..+.
T Consensus 298 ~~vD~Vllht~vdp~~--~~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aGADiv 355 (391)
T PRK13307 298 VKPDVVELHRGIDEEG--TEHAWGNIKEIKKAGGKILVAVAGGVRVENVEEALKAGADIL 355 (391)
T ss_pred CCCCEEEEccccCCCc--ccchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHHHcCCCEE
Confidence 3578888896 44431 23466677777765321234444 356778888877665543
Done!