Query 024803
Match_columns 262
No_of_seqs 195 out of 1634
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 14:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024803.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024803hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wfl_A Zinc finger protein 216 78.9 2.7 9.2E-05 29.6 4.3 35 146-181 24-63 (74)
2 1x4u_A Zinc finger, FYVE domai 78.4 1.4 4.9E-05 31.4 2.9 25 146-170 13-39 (84)
3 3j21_g 50S ribosomal protein L 74.9 0.69 2.3E-05 30.3 0.3 28 145-172 12-39 (51)
4 1z2q_A LM5-1; membrane protein 74.6 1.8 6.3E-05 30.9 2.6 27 144-170 18-46 (84)
5 2yw8_A RUN and FYVE domain-con 71.7 2 6.8E-05 30.5 2.1 26 146-171 18-45 (82)
6 2ayj_A 50S ribosomal protein L 69.8 1.9 6.4E-05 28.7 1.5 27 145-171 17-43 (56)
7 1vfy_A Phosphatidylinositol-3- 68.3 2.2 7.4E-05 29.6 1.7 23 148-170 12-36 (73)
8 1joc_A EEA1, early endosomal a 67.2 2.4 8.2E-05 32.7 1.9 24 147-170 69-94 (125)
9 1dvp_A HRS, hepatocyte growth 66.6 2.3 7.7E-05 35.8 1.8 25 147-171 161-187 (220)
10 1wfk_A Zinc finger, FYVE domai 65.6 3.5 0.00012 29.8 2.4 24 147-170 9-34 (88)
11 1y02_A CARP2, FYVE-ring finger 62.6 3 0.0001 32.0 1.6 23 148-170 20-44 (120)
12 3t7l_A Zinc finger FYVE domain 61.1 3.8 0.00013 29.6 1.9 24 147-170 20-45 (90)
13 3zyq_A Hepatocyte growth facto 59.5 3.3 0.00011 35.1 1.5 25 147-171 164-190 (226)
14 1wff_A Riken cDNA 2810002D23 p 49.1 15 0.00051 26.5 3.3 36 145-181 23-64 (85)
15 1wg2_A Zinc finger (AN1-like) 49.0 20 0.00067 24.4 3.7 35 146-181 14-53 (64)
16 1wfh_A Zinc finger (AN1-like) 48.4 25 0.00085 23.9 4.1 35 146-181 14-53 (64)
17 2cr8_A MDM4 protein; ZF-ranbp 48.3 7.4 0.00025 25.3 1.4 20 149-168 13-32 (53)
18 2c6a_A Ubiquitin-protein ligas 46.0 7.9 0.00027 24.6 1.2 22 148-169 14-35 (46)
19 2vrw_B P95VAV, VAV1, proto-onc 39.4 14 0.00046 33.5 2.3 27 146-172 356-385 (406)
20 1wil_A KIAA1045 protein; ring 38.9 24 0.00083 25.4 3.0 26 145-170 13-38 (89)
21 2dkt_A Ring finger and CHY zin 38.1 7.2 0.00025 30.9 0.2 25 149-173 85-110 (143)
22 3mpx_A FYVE, rhogef and PH dom 33.2 9 0.00031 34.9 0.0 24 147-170 375-400 (434)
23 2jrp_A Putative cytoplasmic pr 31.1 14 0.00048 26.3 0.7 18 150-168 21-38 (81)
24 1twf_L ABC10-alpha, DNA-direct 30.5 28 0.00096 24.0 2.2 26 147-172 28-56 (70)
25 3u5e_m 60S ribosomal protein L 25.6 19 0.00063 27.3 0.6 25 146-170 92-118 (128)
26 1h7d_A Aminolevulinic acid syn 25.6 23 0.0008 22.7 1.0 14 172-185 5-18 (49)
27 1x4w_A Hypothetical protein FL 25.5 42 0.0014 23.0 2.3 34 147-181 15-56 (67)
28 1ffk_W Ribosomal protein L37AE 22.2 30 0.001 24.1 1.1 31 142-172 22-56 (73)
29 2k1p_A Zinc finger RAN-binding 22.2 56 0.0019 18.8 2.1 23 147-169 6-28 (33)
30 3gj3_B Nuclear pore complex pr 20.6 46 0.0016 19.4 1.5 21 149-169 9-29 (33)
No 1
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=78.87 E-value=2.7 Score=29.57 Aligned_cols=35 Identities=14% Similarity=-0.006 Sum_probs=23.0
Q ss_pred CCCCCCCCCccCCCCcccccccCC--ccC---CCCcccccc
Q 024803 146 LGVDPDNENSLSRKRVRYCKICKA--HVE---GFDHHCPAF 181 (262)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~--CV~---r~DHHCpWv 181 (262)
..+.|..|+.....-...|+ ||. |-. .=||.|++-
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fD 63 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYD 63 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCC
T ss_pred cCCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcch
Confidence 45689999875443347788 765 333 338999864
No 2
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.38 E-value=1.4 Score=31.41 Aligned_cols=25 Identities=16% Similarity=0.107 Sum_probs=18.2
Q ss_pred CCCCCCCCCcc--CCCCcccccccCCc
Q 024803 146 LGVDPDNENSL--SRKRVRYCKICKAH 170 (262)
Q Consensus 146 ~~~~C~~C~~~--kP~Rs~HC~~C~~C 170 (262)
....|..|+.. -..|-|||+.||+-
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcE
Confidence 34578888752 34688999999874
No 3
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=74.91 E-value=0.69 Score=30.31 Aligned_cols=28 Identities=7% Similarity=-0.097 Sum_probs=23.5
Q ss_pred CCCCCCCCCCccCCCCcccccccCCccC
Q 024803 145 ELGVDPDNENSLSRKRVRYCKICKAHVE 172 (262)
Q Consensus 145 ~~~~~C~~C~~~kP~Rs~HC~~C~~CV~ 172 (262)
.....|+.|....|+++..|+-||.--+
T Consensus 12 ~~k~iCpkC~a~~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 12 FKKYVCLRCGATNPWGAKKCRKCGYKRL 39 (51)
T ss_dssp SSEEECTTTCCEECTTCSSCSSSSSCCC
T ss_pred hCCccCCCCCCcCCCCceecCCCCCccc
Confidence 3456899999999999999999987543
No 4
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=74.57 E-value=1.8 Score=30.87 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCcc--CCCCcccccccCCc
Q 024803 144 SELGVDPDNENSL--SRKRVRYCKICKAH 170 (262)
Q Consensus 144 ~~~~~~C~~C~~~--kP~Rs~HC~~C~~C 170 (262)
+.....|..|+.. --.|-|||+.||+-
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v 46 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYV 46 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcE
Confidence 3345678888753 23688999999874
No 5
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=71.75 E-value=2 Score=30.54 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=18.3
Q ss_pred CCCCCCCCCcc--CCCCcccccccCCcc
Q 024803 146 LGVDPDNENSL--SRKRVRYCKICKAHV 171 (262)
Q Consensus 146 ~~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (262)
....|..|+.. --.|-|||+.||+-+
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEE
Confidence 34568888752 236889999998743
No 6
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=69.82 E-value=1.9 Score=28.69 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=22.9
Q ss_pred CCCCCCCCCCccCCCCcccccccCCcc
Q 024803 145 ELGVDPDNENSLSRKRVRYCKICKAHV 171 (262)
Q Consensus 145 ~~~~~C~~C~~~kP~Rs~HC~~C~~CV 171 (262)
.....|..|...-|+|+..|+.||.--
T Consensus 17 ~~k~ICrkC~ARnp~~A~~CRKCg~~~ 43 (56)
T 2ayj_A 17 FLKKVCRKCGALNPIRATKCRRCHSTN 43 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCCCC
T ss_pred hchhhhccccCcCCcccccccCCCCCC
Confidence 345699999999999999999888543
No 7
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=68.30 E-value=2.2 Score=29.64 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=16.7
Q ss_pred CCCCCCCcc--CCCCcccccccCCc
Q 024803 148 VDPDNENSL--SRKRVRYCKICKAH 170 (262)
Q Consensus 148 ~~C~~C~~~--kP~Rs~HC~~C~~C 170 (262)
.-|..|+.. .-.|-|||+.||+-
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v 36 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGV 36 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CcccCCCCccCCccccccCCCCCEE
Confidence 358888752 33688999999874
No 8
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=67.19 E-value=2.4 Score=32.69 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=17.7
Q ss_pred CCCCCCCCcc--CCCCcccccccCCc
Q 024803 147 GVDPDNENSL--SRKRVRYCKICKAH 170 (262)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~C 170 (262)
...|..|+.. -..|-|||+.||+-
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~v 94 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNI 94 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCCCcCcCCccccccccccCCCCCeE
Confidence 4568888753 34688999999874
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=66.60 E-value=2.3 Score=35.80 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=18.0
Q ss_pred CCCCCCCCcc--CCCCcccccccCCcc
Q 024803 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (262)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (262)
...|..|+.. --.|-|||+.||+-+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEE
Confidence 3578888752 236889999998743
No 10
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=65.58 E-value=3.5 Score=29.77 Aligned_cols=24 Identities=17% Similarity=-0.000 Sum_probs=17.4
Q ss_pred CCCCCCCCcc--CCCCcccccccCCc
Q 024803 147 GVDPDNENSL--SRKRVRYCKICKAH 170 (262)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~C 170 (262)
...|..|+.. ...|-|||+.||+-
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCE
Confidence 3468888752 34688999999873
No 11
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=62.62 E-value=3 Score=32.04 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=17.3
Q ss_pred CCCCCCCc--cCCCCcccccccCCc
Q 024803 148 VDPDNENS--LSRKRVRYCKICKAH 170 (262)
Q Consensus 148 ~~C~~C~~--~kP~Rs~HC~~C~~C 170 (262)
..|..|+. .-..|-|||+.||+-
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 56888875 234689999999884
No 12
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=61.13 E-value=3.8 Score=29.61 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=17.1
Q ss_pred CCCCCCCCc--cCCCCcccccccCCc
Q 024803 147 GVDPDNENS--LSRKRVRYCKICKAH 170 (262)
Q Consensus 147 ~~~C~~C~~--~kP~Rs~HC~~C~~C 170 (262)
...|..|+. ---.|-|||+.||+-
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v 45 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKV 45 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCE
Confidence 456888875 223578999999874
No 13
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=59.50 E-value=3.3 Score=35.07 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=17.4
Q ss_pred CCCCCCCCc--cCCCCcccccccCCcc
Q 024803 147 GVDPDNENS--LSRKRVRYCKICKAHV 171 (262)
Q Consensus 147 ~~~C~~C~~--~kP~Rs~HC~~C~~CV 171 (262)
...|..|+. ---.|-|||+.||+.+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEe
Confidence 357888874 2235789999998743
No 14
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=49.15 E-value=15 Score=26.46 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=24.3
Q ss_pred CCCCCCCCCCccCCC-CcccccccCC--ccCC---CCcccccc
Q 024803 145 ELGVDPDNENSLSRK-RVRYCKICKA--HVEG---FDHHCPAF 181 (262)
Q Consensus 145 ~~~~~C~~C~~~kP~-Rs~HC~~C~~--CV~r---~DHHCpWv 181 (262)
...+.|..|+..-.. ..-+|+ ||. |-.. -||.|++-
T Consensus 23 ~~~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~~HRy~e~H~C~fD 64 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLATSFECR-CGNNFCASHRYAEAHGCNYD 64 (85)
T ss_dssp CCCCBCSSSCCBCSSSSCEECT-TCCEECTTTCSTGGGTCCSC
T ss_pred ccCccchhhCCeecccCCeEcC-CCCEecccCCCccCCCCcch
Confidence 445789999876555 367786 764 4443 49999864
No 15
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=48.98 E-value=20 Score=24.40 Aligned_cols=35 Identities=17% Similarity=0.025 Sum_probs=21.7
Q ss_pred CCCCCCCCCccCCCCcccccccCC-----ccCCCCcccccc
Q 024803 146 LGVDPDNENSLSRKRVRYCKICKA-----HVEGFDHHCPAF 181 (262)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~-----CV~r~DHHCpWv 181 (262)
..+.|..|+..-..-.-.| .||. --..-||.|++-
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~HR~~e~H~C~fD 53 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKC-KCGSTFCGSHRYPEKHECSFD 53 (64)
T ss_dssp CSCSCTTTCCCCTTSCEEC-TTSCEECSSSCSSTTTTCCCC
T ss_pred cCCcChhhCCcccccCeEe-ecCCEecccCCCccccCCCcc
Confidence 3568999987533335667 4654 333349999864
No 16
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=48.41 E-value=25 Score=23.89 Aligned_cols=35 Identities=11% Similarity=-0.078 Sum_probs=22.2
Q ss_pred CCCCCCCCCccCCCCcccccccCC--cc---CCCCcccccc
Q 024803 146 LGVDPDNENSLSRKRVRYCKICKA--HV---EGFDHHCPAF 181 (262)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~--CV---~r~DHHCpWv 181 (262)
..+.|..|+..-..-.-.|+ ||. |- ..-||.|++-
T Consensus 14 ~~~rC~~C~kkvgl~~f~Cr-Cg~~FC~~HRy~e~H~C~fD 53 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCR-CGTTFCGSHRYPEVHGCTFD 53 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECS-SSCEECTTTCSTTTTTCCCC
T ss_pred cCCcChhhCCccCccCEEee-cCCEeccccCCcccCCCCch
Confidence 45789999875443356774 654 33 3338989864
No 17
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=48.26 E-value=7.4 Score=25.30 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=14.1
Q ss_pred CCCCCCccCCCCcccccccC
Q 024803 149 DPDNENSLSRKRVRYCKICK 168 (262)
Q Consensus 149 ~C~~C~~~kP~Rs~HC~~C~ 168 (262)
.|.+|+..-||--.||..|-
T Consensus 13 kC~~C~k~N~Pl~ryC~rCw 32 (53)
T 2cr8_A 13 QCTECKKFNSPSKRYCFRCW 32 (53)
T ss_dssp ECSSSCCEECSSCCBCTTTC
T ss_pred ecccccccCCCccchhHHHH
Confidence 57777777777777776663
No 18
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=45.98 E-value=7.9 Score=24.59 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=16.8
Q ss_pred CCCCCCCccCCCCcccccccCC
Q 024803 148 VDPDNENSLSRKRVRYCKICKA 169 (262)
Q Consensus 148 ~~C~~C~~~kP~Rs~HC~~C~~ 169 (262)
=.|.+|+..-||--.||..|-+
T Consensus 14 WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 14 WKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp EECTTTCCEECSSCSSCTTTCC
T ss_pred EecccccccCCCccchhhHHHh
Confidence 3688888888888888877643
No 19
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=39.36 E-value=14 Score=33.50 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=19.9
Q ss_pred CCCCCCCCCccC---CCCcccccccCCccC
Q 024803 146 LGVDPDNENSLS---RKRVRYCKICKAHVE 172 (262)
Q Consensus 146 ~~~~C~~C~~~k---P~Rs~HC~~C~~CV~ 172 (262)
...+|..|+..- ..|-|||+.||..|-
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h 385 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAH 385 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEEC
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccc
Confidence 467999998643 468899998876443
No 20
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=38.91 E-value=24 Score=25.39 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=21.8
Q ss_pred CCCCCCCCCCccCCCCcccccccCCc
Q 024803 145 ELGVDPDNENSLSRKRVRYCKICKAH 170 (262)
Q Consensus 145 ~~~~~C~~C~~~kP~Rs~HC~~C~~C 170 (262)
.....|..|+.+.-.----||+|+|+
T Consensus 13 ~~D~~C~VC~~~t~~~l~pCRvC~Rv 38 (89)
T 1wil_A 13 VNDEMCDVCEVWTAESLFPCRVCTRV 38 (89)
T ss_dssp CCSCCCTTTCCCCSSCCSSCSSSSSC
T ss_pred CCCcccCccccccccceecccccccc
Confidence 34678999999987777789999996
No 21
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=38.12 E-value=7.2 Score=30.86 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=15.2
Q ss_pred CCCCCCccCCC-CcccccccCCccCC
Q 024803 149 DPDNENSLSRK-RVRYCKICKAHVEG 173 (262)
Q Consensus 149 ~C~~C~~~kP~-Rs~HC~~C~~CV~r 173 (262)
||.+|+.+.++ ...||..||-|-.+
T Consensus 85 ~C~~C~l~d~~k~~yHC~~CgiCR~G 110 (143)
T 2dkt_A 85 YCSICHLFDKDKRQYHCESCGICRIG 110 (143)
T ss_dssp ECSSSCCEECSSSEEEETTTTEEEES
T ss_pred EeceeecccCCCceecCCCCCceecc
Confidence 78888877543 24556666555543
No 22
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=33.16 E-value=9 Score=34.91 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=0.0
Q ss_pred CCCCCCCCcc--CCCCcccccccCCc
Q 024803 147 GVDPDNENSL--SRKRVRYCKICKAH 170 (262)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~C 170 (262)
...|..|+.. --.|-|||+.||+.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~ 400 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKI 400 (434)
T ss_dssp --------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCE
Confidence 3467777641 22467889988874
No 23
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=31.10 E-value=14 Score=26.33 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=7.4
Q ss_pred CCCCCccCCCCcccccccC
Q 024803 150 PDNENSLSRKRVRYCKICK 168 (262)
Q Consensus 150 C~~C~~~kP~Rs~HC~~C~ 168 (262)
|..|+..-++.+ .|+.||
T Consensus 21 C~~C~~~~~~~a-fCPeCg 38 (81)
T 2jrp_A 21 CETCAKDFSLQA-LCPDCR 38 (81)
T ss_dssp CTTTCCEEEEEE-ECSSSC
T ss_pred CccccccCCCcc-cCcchh
Confidence 444444333333 444443
No 24
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=30.46 E-value=28 Score=23.96 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=18.2
Q ss_pred CCCCCCCCcc---CCCCcccccccCCccC
Q 024803 147 GVDPDNENSL---SRKRVRYCKICKAHVE 172 (262)
Q Consensus 147 ~~~C~~C~~~---kP~Rs~HC~~C~~CV~ 172 (262)
.-.|..|... ++..+-||+.||.-|+
T Consensus 28 ~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 28 KYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 3478888764 4556778999987553
No 25
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=25.62 E-value=19 Score=27.30 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=21.3
Q ss_pred CCCCCCCCCccCCCCcccccc--cCCc
Q 024803 146 LGVDPDNENSLSRKRVRYCKI--CKAH 170 (262)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~--C~~C 170 (262)
....|.+|..+-|+|++.|+. ||..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 356999999999999999994 8764
No 26
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=25.58 E-value=23 Score=22.74 Aligned_cols=14 Identities=14% Similarity=0.301 Sum_probs=11.5
Q ss_pred CCCCccccccccch
Q 024803 172 EGFDHHCPAFGNCI 185 (262)
Q Consensus 172 ~r~DHHCpWv~nCV 185 (262)
..++|+||+++.+=
T Consensus 5 a~~l~~CPFL~R~p 18 (49)
T 1h7d_A 5 AMLLRSCPVLSQGP 18 (49)
T ss_dssp SCSCCSCCCCSSCS
T ss_pred hhhhccCCchhcCC
Confidence 46789999998775
No 27
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.47 E-value=42 Score=22.97 Aligned_cols=34 Identities=12% Similarity=0.025 Sum_probs=21.2
Q ss_pred CCCCCCCCccCCCC---cccccccCC--ccCCC---Ccccccc
Q 024803 147 GVDPDNENSLSRKR---VRYCKICKA--HVEGF---DHHCPAF 181 (262)
Q Consensus 147 ~~~C~~C~~~kP~R---s~HC~~C~~--CV~r~---DHHCpWv 181 (262)
.+.|..|+..-..- .-+| .||. |-..+ ||.|.+-
T Consensus 15 ~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~HRy~e~H~C~fD 56 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQELGSC-RCGYVFCMLHRLPEQHDCTFD 56 (67)
T ss_dssp TTBCSSSCCBCCHHHHHHHCC-SSSCCCCTTTCSTGGGTCSSC
T ss_pred CCcchhhCCeecccccCceEe-cCCCEehhccCCccccCCccc
Confidence 46789998665543 2577 5654 33333 8989764
No 28
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=22.17 E-value=30 Score=24.06 Aligned_cols=31 Identities=13% Similarity=0.035 Sum_probs=21.8
Q ss_pred cCCCCCCCCCCCCccCCCCc----ccccccCCccC
Q 024803 142 EGSELGVDPDNENSLSRKRV----RYCKICKAHVE 172 (262)
Q Consensus 142 ~~~~~~~~C~~C~~~kP~Rs----~HC~~C~~CV~ 172 (262)
........|+.|...+-.|. .+|+.|++-+.
T Consensus 22 ~~q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~A 56 (73)
T 1ffk_W 22 IKHKKKYKCPVCGFPKLKRASTSIWVCGHCGYKIA 56 (73)
T ss_pred HhcccCccCCCCCCceeEEEEeEEEECCCCCcEEE
Confidence 34455678999987655554 78999987654
No 29
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=22.16 E-value=56 Score=18.81 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=15.8
Q ss_pred CCCCCCCCccCCCCcccccccCC
Q 024803 147 GVDPDNENSLSRKRVRYCKICKA 169 (262)
Q Consensus 147 ~~~C~~C~~~kP~Rs~HC~~C~~ 169 (262)
.=.|+.|....-.|...|..|+.
T Consensus 6 DW~C~~C~~~Nfa~R~~C~~C~~ 28 (33)
T 2k1p_A 6 DWQCKTCSNVNWARRSECNMCNT 28 (33)
T ss_dssp SCBCSSSCCBCCTTCSBCSSSCC
T ss_pred CcccCCCCCccccccccccccCC
Confidence 34677787777777777766654
No 30
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=20.62 E-value=46 Score=19.38 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=15.4
Q ss_pred CCCCCCccCCCCcccccccCC
Q 024803 149 DPDNENSLSRKRVRYCKICKA 169 (262)
Q Consensus 149 ~C~~C~~~kP~Rs~HC~~C~~ 169 (262)
-|+.|-..-++.+.+|..|+.
T Consensus 9 ~C~~C~~~N~~~~~kC~aC~t 29 (33)
T 3gj3_B 9 DCDTCLVQNKPEAVKCVACET 29 (33)
T ss_dssp ECTTTCCEECTTCSBCTTTCC
T ss_pred eCCcccCCCccccCEEcccCC
Confidence 477787777777777877753
Done!