BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024804
(262 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54YW1|ELMOA_DICDI ELMO domain-containing protein A OS=Dictyostelium discoideum
GN=elmoA PE=1 SV=1
Length = 977
Score = 115 bits (287), Expect = 5e-25, Method: Composition-based stats.
Identities = 67/213 (31%), Positives = 100/213 (46%), Gaps = 29/213 (13%)
Query: 65 QEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPST 124
Q Q + R +V ++ EH L LW+ +P +L +SEQWK+MG+QG DP T
Sbjct: 362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCT 421
Query: 125 DFRGGGFISLENLLYLARNFPDLLRK---QEGDRSVWEYPFAVAGVNITFML---IQMLD 178
DFR G L+NL+Y A+N+ + RK + DR EYP A AG+ +TF L I +
Sbjct: 422 DFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQIDRKEREYPTATAGIVLTFELYNSIFKMG 481
Query: 179 LEAVKPRTMVGAT---------------FLKFLSENESAFDLLYCITFKLMDHQWLAMRA 223
+ P + F + AF+ +YC TF+++D W M
Sbjct: 482 TPNLNPYNSTTSNTTSNTTSTTNIDDLPFFPLFFSHPHAFEEVYCTTFQILDSTWDDMNG 541
Query: 224 SYMDFNTVMKSTRRQLERELLLEDVTRLEDLPS 256
+YM F +M S + + +T LE P+
Sbjct: 542 TYMHFQKIMSSVKNLI--------ITALESKPT 566
>sp|Q54RS7|ELMOC_DICDI ELMO domain-containing protein C OS=Dictyostelium discoideum
GN=elmoC PE=4 SV=1
Length = 618
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 102/188 (54%), Gaps = 12/188 (6%)
Query: 61 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGK 120
+T Q + ++ L + Y+S+ P+H E L+ LW+ +P++E + S WK+ G+Q
Sbjct: 357 VTAKQSQTIKILFQKKSTIYESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSD 415
Query: 121 DPSTDFRGGGFISLENLLYLARNFPDLLRKQEGDRSVWEYPFAVAGVNIT---FMLIQML 177
DP+ DFRG G + L NL++L ++ D + QE +YPFAVAG+NI+ F + Q+
Sbjct: 416 DPTRDFRGMGIMGLLNLIHLVQHHNDWV--QEILAQDRDYPFAVAGINISNLIFEVFQIS 473
Query: 178 DLEAVKPRTMVG------ATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTV 231
+ +P A N+ AF+ LY + F L+DH W+ M A+YM F V
Sbjct: 474 EDSLQQPWYSSFWSSSYMAMLCSMSRHNDHAFEELYFLIFNLLDHLWIQMNATYMMFPLV 533
Query: 232 MKSTRRQL 239
+K + QL
Sbjct: 534 IKKLKSQL 541
>sp|Q54UP9|ELMOD_DICDI Ankyrin repeat and ELMO domain-containing protein D
OS=Dictyostelium discoideum GN=elmoD PE=4 SV=1
Length = 1267
Score = 94.0 bits (232), Expect = 9e-19, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 24/178 (13%)
Query: 69 LQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRG 128
+Q L + Y+ P H+ L LW+ FP++ + E W+ +G+Q KDPS+DFRG
Sbjct: 290 IQGLIMDSKTPYNKDEPSHQRLLETLWSTLFPNQVFQR-SHENWQIIGFQNKDPSSDFRG 348
Query: 129 GGFISLENLLYLARNFPDLL------RKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAV 182
G L++L+YLA+N D+ R+ E + YP+A +G+ +T L+ E V
Sbjct: 349 MGLAGLKHLIYLAQNHKDMFMNPLINRQPEANY----YPYATSGIQVTSFLV-----ECV 399
Query: 183 KP-------RTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 233
KP ++G + L E+E+A + +YC+ ++ W A+YM F V +
Sbjct: 400 KPINISANHSDVIGQIY-PILFESENALNEIYCVLMEIFGIVWKDWNATYMIFQKVFQ 456
>sp|Q54VR8|ELMOB_DICDI ELMO domain-containing protein B OS=Dictyostelium discoideum
GN=elmoB PE=4 SV=1
Length = 284
Score = 90.9 bits (224), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 9/158 (5%)
Query: 78 VAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENL 137
+ YD++ EH +L LW A PD +S++W +G+QG DP+TDFRG G + L+NL
Sbjct: 116 IPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGMGILGLDNL 175
Query: 138 LYLARNFPDLLRK-QEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFL 196
+Y + + R+ + S YPFA+ G+NIT +++ ++D K + L
Sbjct: 176 IYFSTQHSEDAREILKNSNSKCCYPFAITGINITALVLNLIDKPHFKIYFFKNGSTL--- 232
Query: 197 SENESAFDLLYCITFKLMDHQWLAMR-ASYMDFNTVMK 233
+ F+ LY + F D + + + S M+FNT+ K
Sbjct: 233 ----TQFNELYSLVFISFDRFYQSKKPKSIMEFNTIKK 266
>sp|Q08DZ3|ELMD2_BOVIN ELMO domain-containing protein 2 OS=Bos taurus GN=ELMOD2 PE=1 SV=1
Length = 293
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 98/215 (45%), Gaps = 19/215 (8%)
Query: 45 CVCAQRRESDPRPSFD--LTPAQEECLQRL----QLRIDV------AYDSSIPEHREALR 92
CV +E + P D + CL ++ QL +DV YDS +H + L
Sbjct: 73 CVEDIMKEKNINPEKDASFKICMKACLLQISGYKQLYLDVESVRKKPYDSDNLQHEKLLI 132
Query: 93 ALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPDLLRK-- 150
LWN P ++L+ IS+QW ++G+QG DP TDFRG G + L NL+Y + N+ +
Sbjct: 133 KLWNLLMPTKKLKARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQIL 192
Query: 151 QEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCIT 210
+ Y +A+ G+N+T M +L EA+K F+ + E F YC
Sbjct: 193 SRSNHPKLGYSYAIVGINLTEMAYSLLKSEALKFHLY---NFVPGIPTMEH-FHQFYCYL 248
Query: 211 FKLMDHQWLAMRA-SYMDFNTVMKSTRRQLERELL 244
D W + S M FN + +++ LL
Sbjct: 249 VYEFDKFWFEEKPESIMYFNVYREKFHEKIKGLLL 283
>sp|Q8IZ81|ELMD2_HUMAN ELMO domain-containing protein 2 OS=Homo sapiens GN=ELMOD2 PE=1
SV=1
Length = 293
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 12/147 (8%)
Query: 49 QRRESDPRPSFDLTPAQEECLQRL----QLRIDV------AYDSSIPEHREALRALWNAA 98
+ + +P + CL ++ QL +DV YDS +H E L LWN
Sbjct: 79 KEKNINPEKDASFKICMKMCLLQITGYKQLYLDVESVRKRPYDSDNLQHEELLMKLWNLL 138
Query: 99 FPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPDLLRK--QEGDRS 156
P ++L IS+QW E+G+QG DP TDFRG G + L NL+Y + N+ + +
Sbjct: 139 MPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHP 198
Query: 157 VWEYPFAVAGVNITFMLIQMLDLEAVK 183
Y +A+ G+N+T M +L EA+K
Sbjct: 199 KLGYSYAIVGINLTEMAYSLLKSEALK 225
>sp|Q8BGF6|ELMD2_MOUSE ELMO domain-containing protein 2 OS=Mus musculus GN=Elmod2 PE=2
SV=1
Length = 293
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 7/153 (4%)
Query: 80 YDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLY 139
YDS+ +H + L LW+ P ++L IS+QW ++G+QG DP TDFRG G + L NL+Y
Sbjct: 120 YDSANAQHEKMLLKLWSLLMPTKKLTARISKQWADIGFQGDDPKTDFRGMGILGLINLVY 179
Query: 140 LARNFPDLLRK--QEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLS 197
+ N+ + + Y +A+ G+N+T M +L EA+K F+ +
Sbjct: 180 FSENYTSEAHQILSRSNHPKLGYSYAIVGINLTEMAYSLLKSEALKLHLY---NFVPGVP 236
Query: 198 ENESAFDLLYCITFKLMDHQWLAMRA-SYMDFN 229
E F YC D WL S M FN
Sbjct: 237 TMEH-FHQFYCYLVYEFDKFWLEEEPESIMYFN 268
>sp|Q499U2|ELMO3_RAT Engulfment and cell motility protein 3 OS=Rattus norvegicus
GN=Elmo3 PE=2 SV=1
Length = 720
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 19/195 (9%)
Query: 72 LQLRIDVAYDSSIPEHREALRALWNAAF-PDEE----------LRDLISEQWKEMGWQGK 120
L+ R+ D E RE L+AL AAF PD E R L +++++G+
Sbjct: 293 LEPRMRTPLDPYSQEQREQLQALRQAAFEPDGESLGTGLSADRRRSLCVREFRKLGFSNS 352
Query: 121 DPSTDFR--GGGFISLENLLYLARNFPD----LLRKQEGDRSVWEYPFAVAGVNITFMLI 174
P+ D G ++L+N+LY +R+ P + + E PFA + + +T +L
Sbjct: 353 SPAQDLERVPPGLLALDNMLYFSRHAPSAYSRFVLENSSREDKHECPFARSSIQLTVLLC 412
Query: 175 QMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKS 234
++L + +P + F + +F L+C+ +L++ W MRA+ DF+ VM+
Sbjct: 413 ELLHVG--EPCSETAQDFSPMFFSQDHSFHELFCVAIQLLNKTWKEMRATQEDFDKVMQV 470
Query: 235 TRRQLERELLLEDVT 249
R QL R L L+ +
Sbjct: 471 VREQLARTLALKPTS 485
>sp|A6QR40|ELMO3_BOVIN Engulfment and cell motility protein 3 OS=Bos taurus GN=ELMO3 PE=2
SV=1
Length = 652
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 19/192 (9%)
Query: 72 LQLRIDVAYDSSIPEHREALRALWNAAFPDE-----------ELRDLISEQWKEMGWQGK 120
L+ R+ D E RE L+AL AAF E R L + +++++G+
Sbjct: 293 LEPRMRTPLDPYSQEQREQLQALRQAAFEPEGESVGAGLSADRRRSLCAREFRKLGFSNS 352
Query: 121 DPSTDFR--GGGFISLENLLYLARNFPD----LLRKQEGDRSVWEYPFAVAGVNITFMLI 174
+P+ D G ++L+N+LY +R P + + E PFA + + +T +L
Sbjct: 353 NPAQDLERVPPGLLALDNMLYFSRQAPSAYSRFVLENSSREDKHECPFARSSIQLTVLLC 412
Query: 175 QMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKS 234
+L + +P + F + +F L+C++ +L++ W MRA+ DF+ VM+
Sbjct: 413 DLLHVG--EPCSETAQDFSPMFFGQDQSFHELFCVSIQLLNKTWKEMRATQEDFDKVMQV 470
Query: 235 TRRQLERELLLE 246
R QL R L L+
Sbjct: 471 VREQLARTLALK 482
>sp|Q0IIE6|ELMD1_BOVIN ELMO domain-containing protein 1 OS=Bos taurus GN=ELMOD1 PE=2 SV=1
Length = 326
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 83/185 (44%), Gaps = 24/185 (12%)
Query: 79 AYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLL 138
+YDS P+H E L LW P+ L IS+QW E+G+QG DP TDFRG G + L NL
Sbjct: 126 SYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQ 185
Query: 139 YLARN--------FPDLLRKQ--EGDRSVWE---------YPFAVAGVNITFMLIQMLDL 179
Y A D L + + ++ WE Y FA+ G+NIT + +L
Sbjct: 186 YFAERDAAAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVS 245
Query: 180 EAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRA-SYMDFNTVMKSTRRQ 238
A+K A LS + F C W+ M+FN V + R++
Sbjct: 246 GALKTHFYNIAPEAPTLSHFQQTF----CYLMHEFHKFWIEEDPMDIMEFNRVREKFRKR 301
Query: 239 LEREL 243
+ ++L
Sbjct: 302 IIKQL 306
>sp|Q5NVD7|ELMD1_PONAB ELMO domain-containing protein 1 OS=Pongo abelii GN=ELMOD1 PE=2
SV=1
Length = 326
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 82/184 (44%), Gaps = 24/184 (13%)
Query: 80 YDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLY 139
YDS P+H E L LW P+ L IS+QW E+G+QG DP TDFRG G + L NL Y
Sbjct: 127 YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQY 186
Query: 140 LARN--------FPDLLRKQ--EGDRSVWE---------YPFAVAGVNITFMLIQMLDLE 180
A D L + + ++ WE Y FA+ G+NIT + +L
Sbjct: 187 FAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSG 246
Query: 181 AVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRA-SYMDFNTVMKSTRRQL 239
A+K A LS + F C W+ M+FN V + R+++
Sbjct: 247 ALKTHFYNIAPEAPTLSHFQQTF----CYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRI 302
Query: 240 EREL 243
++L
Sbjct: 303 IKQL 306
>sp|Q96BJ8|ELMO3_HUMAN Engulfment and cell motility protein 3 OS=Homo sapiens GN=ELMO3
PE=2 SV=3
Length = 720
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 19/195 (9%)
Query: 72 LQLRIDVAYDSSIPEHREALRALWNAAFPDE-----------ELRDLISEQWKEMGWQGK 120
L+ R+ D E RE L+ L AAF E R L + +++++G+
Sbjct: 293 LEPRMRTPLDPYSQEQREQLQVLRQAAFEVEGESSGAGLSADRRRSLCAREFRKLGFSNS 352
Query: 121 DPSTDFR--GGGFISLENLLYLARNFPD----LLRKQEGDRSVWEYPFAVAGVNITFMLI 174
+P+ D G ++L+N+LY +RN P + + E PFA + +T +L
Sbjct: 353 NPAQDLERVPPGLLALDNMLYFSRNAPSAYSRFVLENSSREDKHECPFARGSIQLTVLLC 412
Query: 175 QMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKS 234
++L + +P + F + +F L+C+ +L++ W MRA+ DF+ VM+
Sbjct: 413 ELLRVG--EPCSETAQDFSPMFFGQDQSFHELFCVGIQLLNKTWKEMRATQEDFDKVMQV 470
Query: 235 TRRQLERELLLEDVT 249
R QL R L L+ +
Sbjct: 471 VREQLARTLALKPTS 485
>sp|Q8N336|ELMD1_HUMAN ELMO domain-containing protein 1 OS=Homo sapiens GN=ELMOD1 PE=2
SV=3
Length = 334
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 83/193 (43%), Gaps = 32/193 (16%)
Query: 79 AYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLL 138
AYDS P+H E L LW P+ L IS+QW E+G+QG DP TDFRG G + L NL
Sbjct: 126 AYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQ 185
Query: 139 YLARN--------FPDLLRKQEGD----------RSVWE---------YPFAVAGVNITF 171
Y A D L + D ++ WE Y FA+ G+NIT
Sbjct: 186 YFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVGINITD 245
Query: 172 MLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRA-SYMDFNT 230
+ +L A+K A LS F +C W+ M+FN
Sbjct: 246 LAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFWIEEDPMDIMEFNR 301
Query: 231 VMKSTRRQLEREL 243
V + R+++ ++L
Sbjct: 302 VREKFRKRIIKQL 314
>sp|Q3V1U8|ELMD1_MOUSE ELMO domain-containing protein 1 OS=Mus musculus GN=Elmod1 PE=2
SV=2
Length = 326
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 81/184 (44%), Gaps = 24/184 (13%)
Query: 80 YDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLY 139
YDS P+H E L LW P+ L +S+QW E+G+QG DP TDFRG G + L NL Y
Sbjct: 127 YDSDNPQHEEMLLKLWELLKPNTPLESRVSKQWCEIGFQGDDPKTDFRGMGLLGLYNLQY 186
Query: 140 LARNFPDLLRKQEGD----------RSVWE---------YPFAVAGVNITFMLIQMLDLE 180
A + ++ D + WE Y FA+ G+NIT + +L
Sbjct: 187 FAERDATVAQQVLSDSVHPKCSKFSKIEWEKKKMDKAIGYSFAIVGINITDLAYNLLVSG 246
Query: 181 AVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRA-SYMDFNTVMKSTRRQL 239
A+K A LS + F C W+ M+FN V + R+++
Sbjct: 247 ALKTHFYNIAPEAPTLSHFQQTF----CYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRI 302
Query: 240 EREL 243
++L
Sbjct: 303 IKQL 306
>sp|Q8BYZ7|ELMO3_MOUSE Engulfment and cell motility protein 3 OS=Mus musculus GN=Elmo3
PE=1 SV=2
Length = 720
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 19/195 (9%)
Query: 72 LQLRIDVAYDSSIPEHREALRALWNAAFPDE-----------ELRDLISEQWKEMGWQGK 120
L+ R+ D E R+ L+AL AAF E R L +++++G+
Sbjct: 293 LEPRMRTPLDPYSQEQRDQLQALRQAAFEPEGESLGTGLSADRRRSLCVREFRKLGFSNS 352
Query: 121 DPSTDFR--GGGFISLENLLYLARNFPD----LLRKQEGDRSVWEYPFAVAGVNITFMLI 174
+P+ D G ++L+N+LY +R+ P + + E PFA + + +T +L
Sbjct: 353 NPAQDLERVPPGLLALDNMLYFSRHAPSAYSRFVLENSSREDKHECPFARSSIQLTALLC 412
Query: 175 QMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKS 234
++L + +P + F + +F L+C+ +L++ W MRA+ DF+ VM+
Sbjct: 413 ELLRVG--EPCSETAQDFSPMFFSQDHSFHELFCVAIQLLNKTWKEMRATQEDFDKVMQV 470
Query: 235 TRRQLERELLLEDVT 249
R QL R L L+ +
Sbjct: 471 VREQLARTLALKPTS 485
>sp|Q92556|ELMO1_HUMAN Engulfment and cell motility protein 1 OS=Homo sapiens GN=ELMO1
PE=1 SV=2
Length = 727
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 79/155 (50%), Gaps = 9/155 (5%)
Query: 96 NAAFPDEELRDLISEQWKEMGWQGK-DPSTDFRGG--GFISLENLLYLARNFPD----LL 148
N++ E+ + + + +K++G+ +P+ DF G ++L+N+LY A++ D ++
Sbjct: 340 NSSGSMEKRKSMYTRDYKKLGFINHVNPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIV 399
Query: 149 RKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYC 208
+ E PF + + +T ML ++L + + T F ++ +F+ +C
Sbjct: 400 LENSSREDKHECPFGRSSIELTKMLCEILKVGELPSET--CNDFHPMFFTHDRSFEEFFC 457
Query: 209 ITFKLMDHQWLAMRASYMDFNTVMKSTRRQLEREL 243
I +L++ W MRA+ DFN VM+ + Q+ R L
Sbjct: 458 ICIQLLNKTWKEMRATSEDFNKVMQVVKEQVMRAL 492
>sp|Q8BPU7|ELMO1_MOUSE Engulfment and cell motility protein 1 OS=Mus musculus GN=Elmo1
PE=1 SV=2
Length = 727
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 79/155 (50%), Gaps = 9/155 (5%)
Query: 96 NAAFPDEELRDLISEQWKEMGWQGK-DPSTDFRGG--GFISLENLLYLARNFPD----LL 148
N++ E+ + + + +K++G+ +P+ DF G ++L+N+LY A++ D ++
Sbjct: 340 NSSGSMEKRKSMYTRDYKKLGFINHVNPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIV 399
Query: 149 RKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYC 208
+ E PF + + +T ML ++L + + T F ++ +F+ +C
Sbjct: 400 LENSSREDKHECPFGRSSIELTKMLCEILKVGELPSET--CNDFHPMFFTHDRSFEEFFC 457
Query: 209 ITFKLMDHQWLAMRASYMDFNTVMKSTRRQLEREL 243
I +L++ W MRA+ DFN VM+ + Q+ R L
Sbjct: 458 ICIQLLNKTWKEMRATSEDFNKVMQVVKEQVMRAL 492
>sp|A4FUD6|ELMO2_BOVIN Engulfment and cell motility protein 2 OS=Bos taurus GN=ELMO2 PE=2
SV=1
Length = 720
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 77/149 (51%), Gaps = 9/149 (6%)
Query: 102 EELRDLISEQWKEMGWQGK-DPSTDFRGG--GFISLENLLYLARNFPD----LLRKQEGD 154
E+ + + ++ +K +G+ +P+ DF G ++L+N+LYLA+ D ++ +
Sbjct: 339 EKRKAMYTKDYKMLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSR 398
Query: 155 RSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLM 214
E PF + + +T ML ++L + + P F + ++ AF+ L+ I +L+
Sbjct: 399 EDKHECPFGRSAIELTKMLCEILQVGEL-PNEGRNDYHPMFFT-HDRAFEELFGICIQLL 456
Query: 215 DHQWLAMRASYMDFNTVMKSTRRQLEREL 243
+ W MRA+ DFN VM+ R Q+ R L
Sbjct: 457 NKTWKEMRATAEDFNKVMQVVREQITRAL 485
>sp|Q5RCC1|ELMO2_PONAB Engulfment and cell motility protein 2 OS=Pongo abelii GN=ELMO2
PE=2 SV=1
Length = 720
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 77/149 (51%), Gaps = 9/149 (6%)
Query: 102 EELRDLISEQWKEMGWQGK-DPSTDFRGG--GFISLENLLYLARNFPD----LLRKQEGD 154
E+ + + ++ +K +G+ +P+ DF G ++L+N+LYLA+ D ++ +
Sbjct: 339 EKRKAMYTKDYKMLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSR 398
Query: 155 RSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLM 214
E PF + + +T ML ++L + + P F + ++ AF+ L+ I +L+
Sbjct: 399 EDKHECPFGRSAIELTKMLCEILQVGEL-PNEGRNDYHPMFFT-HDRAFEELFGICIQLL 456
Query: 215 DHQWLAMRASYMDFNTVMKSTRRQLEREL 243
+ W MRA+ DFN VM+ R Q+ R L
Sbjct: 457 NKTWKEMRATAEDFNKVMQVVREQITRAL 485
>sp|Q96JJ3|ELMO2_HUMAN Engulfment and cell motility protein 2 OS=Homo sapiens GN=ELMO2
PE=1 SV=2
Length = 720
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 77/149 (51%), Gaps = 9/149 (6%)
Query: 102 EELRDLISEQWKEMGWQGK-DPSTDFRGG--GFISLENLLYLARNFPD----LLRKQEGD 154
E+ + + ++ +K +G+ +P+ DF G ++L+N+LYLA+ D ++ +
Sbjct: 339 EKRKAMYTKDYKMLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSR 398
Query: 155 RSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLM 214
E PF + + +T ML ++L + + P F + ++ AF+ L+ I +L+
Sbjct: 399 EDKHECPFGRSAIELTKMLCEILQVGEL-PNEGRNDYHPMFFT-HDRAFEELFGICIQLL 456
Query: 215 DHQWLAMRASYMDFNTVMKSTRRQLEREL 243
+ W MRA+ DFN VM+ R Q+ R L
Sbjct: 457 NKTWKEMRATAEDFNKVMQVVREQITRAL 485
>sp|Q8BHL5|ELMO2_MOUSE Engulfment and cell motility protein 2 OS=Mus musculus GN=Elmo2
PE=1 SV=1
Length = 732
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 77/149 (51%), Gaps = 9/149 (6%)
Query: 102 EELRDLISEQWKEMGWQGK-DPSTDFRGG--GFISLENLLYLARNFPD----LLRKQEGD 154
E+ + + ++ +K +G+ +P+ DF G ++L+N+LYLA+ D ++ +
Sbjct: 351 EKRKAMYTKDYKMLGFTNHINPALDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSR 410
Query: 155 RSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLM 214
E PF + + +T ML ++L + + P F + ++ AF+ L+ I +L+
Sbjct: 411 EDKHECPFGRSAIELTKMLCEILQVGEL-PNEGRNDYHPMFFT-HDRAFEELFGICIQLL 468
Query: 215 DHQWLAMRASYMDFNTVMKSTRRQLEREL 243
+ W MRA+ DFN VM+ R Q+ R L
Sbjct: 469 NKTWKEMRATAEDFNKVMQVVREQITRAL 497
>sp|Q96FG2|ELMD3_HUMAN ELMO domain-containing protein 3 OS=Homo sapiens GN=ELMOD3 PE=2
SV=2
Length = 381
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 11/157 (7%)
Query: 81 DSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYL 140
DS P H L+ ++ + L W+++G+QG +P+TD RG GF++L +LLYL
Sbjct: 165 DSQDPVHGRVLQTIYKKLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYL 224
Query: 141 ARNFPDLLRKQEGDR----SVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFL 196
+ L QE R + ++PF + VNIT + IQ L E + + +
Sbjct: 225 VMDSKTLPMAQEIFRLSRHHIQQFPFCLMSVNITHIAIQALREECLSRECNRQQKVIPVV 284
Query: 197 SENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 233
+ Y TF + H W R + D V+K
Sbjct: 285 NS-------FYAATFLHLAHVWRTQRKTISDSGFVLK 314
>sp|Q58DT5|ELMD3_BOVIN ELMO domain-containing protein 3 OS=Bos taurus GN=ELMOD3 PE=2 SV=1
Length = 381
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 11/157 (7%)
Query: 81 DSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYL 140
DS P H L+ ++ + L + W+++G+QG +P+TD RG GF++L +LLYL
Sbjct: 165 DSQDPMHGRVLQTIYKKLTGSKFDCALHGDHWEDLGFQGTNPATDLRGAGFLALLHLLYL 224
Query: 141 ARNFPDLLRKQE----GDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFL 196
+ LL +E + ++PF + VNIT + IQ L E + + +
Sbjct: 225 VMDSKTLLMAREILRLSRHHIQQFPFCLMSVNITRIAIQALREECLSRECNRQQKVIPVV 284
Query: 197 SENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 233
+ Y TF + H W + D V+K
Sbjct: 285 NS-------FYAATFLRLAHIWRTQHKTISDSGFVLK 314
>sp|Q91YP6|ELMD3_MOUSE ELMO domain-containing protein 3 OS=Mus musculus GN=Elmod3 PE=2
SV=1
Length = 381
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 11/157 (7%)
Query: 81 DSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYL 140
DS P H L+ ++ + L + W+++G+QG +P+TD RG GF++L +LLYL
Sbjct: 165 DSQNPTHGRVLQTIYKKLTGSKFDCALHGDHWEDLGFQGANPATDLRGAGFLALLHLLYL 224
Query: 141 ARNFPDLLRKQE----GDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFL 196
+ L QE + ++PF + VNIT + IQ L E + + +
Sbjct: 225 VMDSKTFLMAQEIFRLSHHHIQQFPFCLMSVNITRIAIQALREECLSRECNRRQKVIPVV 284
Query: 197 SENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 233
+ Y TF + W + + +D V+K
Sbjct: 285 NS-------FYAATFLHLARVWRTQQKTILDSGFVLK 314
>sp|Q5XIQ2|ELMD3_RAT ELMO domain-containing protein 3 OS=Rattus norvegicus GN=Elmod3
PE=2 SV=1
Length = 356
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 11/157 (7%)
Query: 81 DSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYL 140
DS P H L+ ++ + L + W+++G+QG +P+TD RG GF++L +LLYL
Sbjct: 165 DSQNPTHGRVLQTIYKKLTGSKFDCALHGDHWEDLGFQGANPATDLRGTGFLALLHLLYL 224
Query: 141 ARNFPDLLRKQE----GDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFL 196
+ LL QE + ++PF + VNIT + IQ L E + + +
Sbjct: 225 VMDSKTLLMAQEILRLSHHHIQQFPFCLMSVNITRIAIQALREECLSRECNRRRKVIPVV 284
Query: 197 SENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMK 233
+ Y TF + W + +D V+K
Sbjct: 285 NS-------FYAATFLHLARMWRTQHNTILDSGFVLK 314
>sp|Q09292|ELMD3_CAEEL ELMO domain-containing protein C56G7.3 OS=Caenorhabditis elegans
GN=C56G7.3 PE=4 SV=2
Length = 322
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 10/140 (7%)
Query: 108 ISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFP-DLLRKQE--GDRSVWEYPFAV 164
+ W +G+Q P TDFRG G + L + + P +LLR ++P AV
Sbjct: 172 VGAHWVTVGFQSATPHTDFRGCGVLGLLQMHTFTQRVPANLLRAIVLLATTEPNDFPLAV 231
Query: 165 AGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRAS 224
+NIT +L+ L A+ F S ++ +C +K + + +
Sbjct: 232 VSINITSILLTQLKKGALDNFGNEIEGLYPFFSALHASAMCRFCSIYK-------SQKCT 284
Query: 225 YMDFNTVMKSTRRQLERELL 244
+ T+ RQLE+ L
Sbjct: 285 LANTQTIFSEITRQLEKSPL 304
>sp|Q54WH5|ELMOE_DICDI ELMO domain-containing protein E OS=Dictyostelium discoideum
GN=elmoE PE=4 SV=1
Length = 1677
Score = 41.2 bits (95), Expect = 0.008, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 65 QEECLQRLQ-LRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPS 123
+E +QRL + +D + H+ L LW +A + SE W +G++ +P
Sbjct: 475 KELHMQRLHPINVD-----KVLSHQILLSDLWGSALSSYPFGGINSEHWLLLGFRSSNPM 529
Query: 124 TDFRGGGFISLENLLYLARN----FPDLLRKQ 151
DF+ G ++L NL Y ++ F LL Q
Sbjct: 530 EDFKNTGVLALRNLSYFSKQHLQPFQSLLLTQ 561
Score = 37.7 bits (86), Expect = 0.090, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 160 YPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWL 219
YP A +++T+ L + + + + + ++ + FD ++ TF L + W
Sbjct: 628 YPLATVAISLTYTLSNIFRIGRIND-SPIDSSIWDIAFSGSNWFDEIFVTTFNLFESLWH 686
Query: 220 AMRASYMDFNTVMKSTRRQLER 241
+ SY DF V+ TR +E+
Sbjct: 687 SEAHSYSDFPQVISHTREIIEK 708
>sp|P06839|RAD3_YEAST DNA repair helicase RAD3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD3 PE=1 SV=1
Length = 778
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 74 LRIDVAYDSSIPEHREAL---RALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGG 130
L + +AY PEHR+ + R + EL +L+ + KE+G+Q DFRG G
Sbjct: 53 LSLTIAYQMHYPEHRKIIYCSRTMSEIEKALVELENLMDYRTKELGYQ-----EDFRGLG 107
Query: 131 FISLENL 137
S +NL
Sbjct: 108 LTSRKNL 114
>sp|Q29G82|NCBP1_DROPS Nuclear cap-binding protein subunit 1 OS=Drosophila pseudoobscura
pseudoobscura GN=Cbp80 PE=3 SV=1
Length = 800
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 60 DLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALW--NAAFPDEELRDLISEQWKEM-- 115
DL +E L+ L LRI+V + +H ALR +W +A P EE D + Q +++
Sbjct: 186 DLYEKKESALESLLLRIEVYLNKRSKKHHNALR-VWSSDAPHPQEEYLDCLWAQIRKLRQ 244
Query: 116 -GWQGKDPSTDFRGGGFISLENLLYLARNFPDLLRKQEGDRSVWEYPFAV 164
W K + I E L + N P ++ D V+ P+ V
Sbjct: 245 DNWAEKHIPRPYLTFDTILCEALQH---NLPQIIPPPHNDAFVYPMPWVV 291
>sp|B4GW22|NCBP1_DROPE Nuclear cap-binding protein subunit 1 OS=Drosophila persimilis
GN=Cbp80 PE=3 SV=1
Length = 800
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 60 DLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALW--NAAFPDEELRDLISEQWKEM-- 115
DL +E L+ L LRI+V + +H ALR +W +A P EE D + Q +++
Sbjct: 186 DLYEKKESALESLLLRIEVYLNKRSKKHHNALR-VWSSDAPHPQEEYLDCLWAQIRKLRQ 244
Query: 116 -GWQGKDPSTDFRGGGFISLENLLYLARNFPDLLRKQEGDRSVWEYPFAV 164
W K + I E L + N P ++ D V+ P+ V
Sbjct: 245 DNWAEKHIPRPYLTFDTILCEALQH---NLPQIIPPPHNDAFVYPMPWVV 291
>sp|Q9UF56|FXL17_HUMAN F-box/LRR-repeat protein 17 OS=Homo sapiens GN=FBXL17 PE=2 SV=3
Length = 701
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%)
Query: 162 FAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAM 221
+A+ + M I+ +D+ K T GAT + S++ L+ C + + L
Sbjct: 607 YALIAIGRYSMTIETVDVGWCKEITDQGATLIAQSSKSLRYLGLMRCDKVNEVTVEQLVQ 666
Query: 222 RASYMDFNTVMKSTRRQLER 241
+ ++ F+TV++ +R LER
Sbjct: 667 QYPHITFSTVLQDCKRTLER 686
>sp|Q6NZP1|ZRAB3_MOUSE DNA annealing helicase and endonuclease ZRANB3 OS=Mus musculus
GN=Zranb3 PE=1 SV=1
Length = 1069
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 70 QRLQLRIDVAYDSSIPEHREAL-RALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRG 128
Q L LR+ A S HR++L A W A P E+L +++ + WQ + G
Sbjct: 963 QELFLRMRDAPKS----HRKSLLNAAWTAKLPLEQLNEMLRNPGEGHFWQVDHIRPVYEG 1018
Query: 129 GGFISLENLLYL 140
GG SL+NL L
Sbjct: 1019 GGQCSLDNLQTL 1030
>sp|Q5FWF4|ZRAB3_HUMAN DNA annealing helicase and endonuclease ZRANB3 OS=Homo sapiens
GN=ZRANB3 PE=1 SV=2
Length = 1079
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 81 DSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYL 140
D+ + + L A W + P E+L ++I + WQ + GGG SL+NL L
Sbjct: 981 DAPKSQRKNLLYATWTSKLPLEQLNEMIRNPGEGHFWQVDHIKPVYGGGGQCSLDNLQTL 1040
Query: 141 A 141
Sbjct: 1041 C 1041
>sp|B3MS75|NCBP1_DROAN Nuclear cap-binding protein subunit 1 OS=Drosophila ananassae
GN=Cbp80 PE=3 SV=1
Length = 800
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 60 DLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALW--NAAFPDEELRDLISEQWKEM-- 115
DL +E L+ L LRI+V + +H ALR +W +A P EE D + Q +++
Sbjct: 186 DLYEKKESALESLLLRIEVYLNKRSKKHHNALR-VWSSDAPHPQEEYLDCLWAQIRKLRQ 244
Query: 116 -GWQGKDPSTDFRGGGFISLENLLYLARNFPDLLRKQEGDRSVWEYP 161
W K + I E L N P ++ D +EYP
Sbjct: 245 DNWAEKHIPRPYLVFDSILCEA---LQHNLPQIVPPSHHD--AFEYP 286
>sp|B4NC41|NCBP1_DROWI Nuclear cap-binding protein subunit 1 OS=Drosophila willistoni
GN=Cbp80 PE=3 SV=1
Length = 800
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 60 DLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALW--NAAFPDEELRDLISEQWKEM-- 115
DL +E L+ L LRI+V + +H ALR +W +A P EE D + Q +++
Sbjct: 186 DLYEKKESALESLLLRIEVYLNKRSKKHHNALR-VWSSDAPHPQEEYLDCLWAQIRKLRQ 244
Query: 116 -GWQGKDPSTDFRGGGFISLENLLYLARNFPDLLRKQEGDRSVWEYP 161
W K + I E L + N P ++ D +EYP
Sbjct: 245 DNWAEKHIPRPYLVFDSILCEALQH---NLPQIIPPPHHD--AFEYP 286
>sp|Q7K4N3|NCBP1_DROME Nuclear cap-binding protein subunit 1 OS=Drosophila melanogaster
GN=Cbp80 PE=1 SV=1
Length = 800
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 60 DLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALW--NAAFPDEELRDLISEQWKEM-- 115
DL +E L+ L LRI+V + +H ALR +W +A P EE D + Q +++
Sbjct: 186 DLYEKKESALESLLLRIEVYLNKRSKKHHNALR-VWSSDAPHPQEEYLDCLWAQIRKLRQ 244
Query: 116 -GWQGKDPSTDFRGGGFISLENLLYLARNFPDLLRKQEGDRSVWEYP 161
W K + I E L N P ++ D +EYP
Sbjct: 245 DNWAEKHIPRPYLVFDSILCEA---LQHNLPTIVPPPHHDN--FEYP 286
>sp|B4I0W6|NCBP1_DROSE Nuclear cap-binding protein subunit 1 OS=Drosophila sechellia
GN=Cbp80 PE=3 SV=1
Length = 800
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 60 DLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALW--NAAFPDEELRDLISEQWKEM-- 115
DL +E L+ L LRI+V + +H ALR +W +A P EE D + Q +++
Sbjct: 186 DLYEKKESALESLLLRIEVYLNKRSKKHHNALR-VWSSDAPHPQEEYLDCLWAQIRKLRQ 244
Query: 116 -GWQGKDPSTDFRGGGFISLENLLYLARNFPDLLRKQEGDRSVWEYP 161
W K + I E L N P ++ D +EYP
Sbjct: 245 DNWAEKHIPRPYLVFDSILCEA---LQHNLPTIVPPPHHDN--FEYP 286
>sp|Q92503|S14L1_HUMAN SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=2
Length = 715
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 60 DLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQ--WKEMG- 116
DLTP QE CL RL+ + + IP+ LR L F ++ R+++ + W++
Sbjct: 250 DLTPLQESCLIRLRQWLQETHKGKIPKDEHILRFLRARDFNIDKAREIMCQSLTWRKQHQ 309
Query: 117 -------WQGKDPSTDFRGGGF 131
W D+ GG+
Sbjct: 310 VDYILETWTPPQVLQDYYAGGW 331
>sp|Q99N95|RM03_MOUSE 39S ribosomal protein L3, mitochondrial OS=Mus musculus GN=Mrpl3
PE=2 SV=1
Length = 348
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 62 TPAQEECLQRLQLRIDVAYDSSIPEHREALRAL-WNAAFPDEELRDLISEQWKEMGWQGK 120
P + CL +++ DS++P ++++ + L + FPD + +L + + E WQ
Sbjct: 289 VPGHKNCLVKIK-------DSTLPAYKDSCKNLPFPTYFPDGDEEELPEDLFDESVWQPS 341
Query: 121 DPSTDF 126
+PS F
Sbjct: 342 EPSITF 347
>sp|P0DF59|ADCA_STRPQ Zinc-binding protein AdcA OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=adcA PE=3 SV=1
Length = 515
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 52 ESDPRPSFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQ 111
E + + D + L+ L+L DVA +PE ++ + ++N F D+E++D
Sbjct: 295 EKEMKAGQDYFTVMRKNLETLRLTTDVAGKEILPE-KDTTKTVYNGYFKDKEVKDRQLSD 353
Query: 112 WKEMGWQGKDP 122
W WQ P
Sbjct: 354 W-SGSWQSVYP 363
>sp|P0DF58|ADCA_STRP3 Zinc-binding protein AdcA OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=adcA PE=3 SV=1
Length = 515
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 52 ESDPRPSFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQ 111
E + + D + L+ L+L DVA +PE ++ + ++N F D+E++D
Sbjct: 295 EKEMKAGQDYFTVMRKNLETLRLTTDVAGKEILPE-KDTTKTVYNGYFKDKEVKDRQLSD 353
Query: 112 WKEMGWQGKDP 122
W WQ P
Sbjct: 354 W-SGSWQSVYP 363
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,435,142
Number of Sequences: 539616
Number of extensions: 3903306
Number of successful extensions: 7934
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 7873
Number of HSP's gapped (non-prelim): 50
length of query: 262
length of database: 191,569,459
effective HSP length: 115
effective length of query: 147
effective length of database: 129,513,619
effective search space: 19038501993
effective search space used: 19038501993
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)