Query 024804
Match_columns 262
No_of_seqs 164 out of 400
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:31:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2998 Uncharacterized conser 100.0 2.8E-66 6.1E-71 467.2 16.7 255 1-262 37-302 (302)
2 PF04727 ELMO_CED12: ELMO/CED- 100.0 3.4E-48 7.5E-53 329.5 12.9 164 68-233 2-170 (170)
3 KOG2999 Regulator of Rac1, req 100.0 4.9E-29 1.1E-33 240.1 11.2 195 58-255 275-487 (713)
4 KOG4404 Tandem pore domain K+ 35.9 45 0.00098 31.7 3.8 74 62-141 35-127 (350)
5 PF08262 Lem_TRP: Leucophaea m 35.9 15 0.00032 17.1 0.3 6 114-119 3-8 (10)
6 PF03735 ENT: ENT domain; Int 33.2 71 0.0015 23.7 3.7 31 61-95 26-56 (73)
7 PHA02819 hypothetical protein; 32.4 68 0.0015 23.7 3.4 32 204-241 2-33 (71)
8 PF11588 DUF3243: Protein of u 30.4 20 0.00044 27.2 0.4 28 74-102 40-67 (81)
9 PHA02650 hypothetical protein; 29.9 61 0.0013 24.5 2.9 33 204-242 2-34 (81)
10 PHA02844 putative transmembran 27.6 85 0.0018 23.5 3.3 33 204-242 2-34 (75)
11 PHA02975 hypothetical protein; 27.3 91 0.002 22.9 3.3 32 204-241 2-33 (69)
12 PHA02692 hypothetical protein; 22.4 1.3E+02 0.0028 22.3 3.3 33 204-242 2-34 (70)
13 KOG0436 Methionyl-tRNA synthet 22.3 74 0.0016 31.7 2.7 49 53-101 98-150 (578)
No 1
>KOG2998 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.8e-66 Score=467.17 Aligned_cols=255 Identities=51% Similarity=0.827 Sum_probs=237.8
Q ss_pred CCCCCCceEEEe-eccCCCCCCCccCCCcchhhccchhhhcc-----ccccccccccCCCCCCCCCCCHHHHHHHHHHHH
Q 024804 1 MDERGGSFVAVR-RISQGLDRGNTCHSTSAEVVAGSAAWLGR-----GLSCVCAQRRESDPRPSFDLTPAQEECLQRLQL 74 (262)
Q Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~~~Q~~~L~~L~~ 74 (262)
|++..|..++|+ +.|.+.+-...-+.++.+...|+.+|+|+ ++.|.|...+..+...|..+.+.|+++++.+++
T Consensus 37 ~~~~~g~~ra~~~e~sl~~~~~~~~~~ass~~~~~~~~~~~~v~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~l~~~~e~ 116 (302)
T KOG2998|consen 37 TDAYEGASRAVRTETSLGQEKPLLGSTASSEAPPGLISFLGRVMVDKGIKNIVDPNRRIDLAACRHLIPGYRELLQRLEE 116 (302)
T ss_pred hcCCCCCcceeecchhhhhhhhhhhcccccccChhhhhhhHHHHHHhccccCCCcccchhhhhccccccCcHHHHHHHHH
Confidence 467889999999 78888888888888999999999999999 999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHhCCCcccchhhhhhHhHhcCCCCCCCCCCCcchhhhHhHHHHHHHhcH----HHHHH
Q 024804 75 RIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFP----DLLRK 150 (262)
Q Consensus 75 ~~~~~~D~~n~~H~~~L~~Lw~~~~p~~~~~~~~~~~Wk~lGFQg~dP~TDFRg~GiLgL~~LlyF~~~~~----~ll~~ 150 (262)
++++|||.+|++|+++|++||+.++|+++++++++++|++|||||+||+|||||+|+|||+||+||+++|| +++++
T Consensus 117 ~~~~~yDs~n~~H~e~L~~lwk~~~p~~~l~~lvs~qW~emGfQG~dPsTDFRG~GfL~LeNLlyFa~~~~~~aq~lL~~ 196 (302)
T KOG2998|consen 117 LRQEPYDSDNPDHEELLLDLWKLLYPDKELPGLVSKQWKEMGFQGADPSTDFRGMGFLGLENLLYFARTYPTSAQRLLLK 196 (302)
T ss_pred HHhccCCCCChhHHHHHHHHHHHhCCCCccchhHHHHHHHhccCCCCCCcccccchHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 67777
Q ss_pred hhCCCCCCCCchHHHhHHHHHHHHHHhhhccCCCc-cccccchhcccccchhhHHHHHHHHHHHHHHHHHhCCCCcccHH
Q 024804 151 QEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPR-TMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFN 229 (262)
Q Consensus 151 ~~s~~~~~~yPFAvagINiT~~L~~~L~~~~~~~~-~~~~~~f~~ll~~~~~~F~eLy~~~F~~f~~~W~~~~at~mdF~ 229 (262)
+ +++.|+|||||||||||+|++++|++++++.. ++....| +++.+|+.|||++|..||++|+++++||||||
T Consensus 197 s--~~~r~eYpfAVvgINIT~m~~qmL~~eal~~~~~~~~~~~-----~~~~~F~~lYc~af~~~d~~Wl~~~~simefn 269 (302)
T KOG2998|consen 197 S--RHPRWEYPFAVVGINITFMAIQMLDLEALKKHFNNIVKVF-----ETEPAFDLLYCYAFLEFDKQWLEQRATIMEFN 269 (302)
T ss_pred c--CCCccCCceEEEeecHHHHHHHHHHhhhcccccccccccc-----ccHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 5 56779999999999999999999999998543 3333333 78899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCcCCcCCCCCcccccC
Q 024804 230 TVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR 262 (262)
Q Consensus 230 ~Vl~~~r~qL~r~L~~~~~~~i~d~~~~~~~~~ 262 (262)
.|++++|.|++++|++.|+..++|+|+|++|.+
T Consensus 270 ~Vlk~~~~qler~L~~~d~~~~~~lp~~~~L~~ 302 (302)
T KOG2998|consen 270 TVLKSFRRQLERELSLDDVLLITDLPAFNLLLQ 302 (302)
T ss_pred HHHHHHHHHHHHhhhhhhhcccccchhhhhhcC
Confidence 999999999999999999999999999999964
No 2
>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2. ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton
Probab=100.00 E-value=3.4e-48 Score=329.50 Aligned_cols=164 Identities=43% Similarity=0.767 Sum_probs=145.5
Q ss_pred HHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCCcccchhhhhhHhHhcCCCCCCCCCCCcchhhhHhHHHHHHHhcH--
Q 024804 68 CLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFP-- 145 (262)
Q Consensus 68 ~L~~L~~~~~~~~D~~n~~H~~~L~~Lw~~~~p~~~~~~~~~~~Wk~lGFQg~dP~TDFRg~GiLgL~~LlyF~~~~~-- 145 (262)
.|+.|++++++|||++|++|+++|++||++++|+.+.+++.+++|++|||||+||+|||||+|+|||+||+||+++||
T Consensus 2 ~l~~l~~~~~~~~d~~~~~h~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~~ 81 (170)
T PF04727_consen 2 TLNLLRALAKTPFDPENPEHEELLQELWNALFPDEPPFSRISEHWKELGFQGEDPATDFRGMGLLGLDCLLYFAENYPDE 81 (170)
T ss_pred hHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCccCCcCccHHHHhCCCCCCcHHHHhhhhHHHHHHHHHHHHHChHH
Confidence 578899999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred --HHHHHhhCCCCCCCCchHHHhHHHHHHHHHHhhhccCCCccccccchhcc-cccchhhHHHHHHHHHHHHHHHHHhCC
Q 024804 146 --DLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKF-LSENESAFDLLYCITFKLMDHQWLAMR 222 (262)
Q Consensus 146 --~ll~~~~s~~~~~~yPFAvagINiT~~L~~~L~~~~~~~~~~~~~~f~~l-l~~~~~~F~eLy~~~F~~f~~~W~~~~ 222 (262)
+++.++..+.+..+||||+||||||.+|+++|+++...+.... .+... +.+.+.+|++|||++|..|+++|++++
T Consensus 82 ~~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~f~elf~~~f~~f~~~W~~~~ 159 (170)
T PF04727_consen 82 FRRILREQSSRSDENWYPFAVASINVTSLLCELLKLGALDSEFYK--RINFLSFFSSLEAFEELFCACFQLFDRTWKEMN 159 (170)
T ss_pred HHHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhcccCHHHhh--cccccccCccHHHHHHHHHHHHHHHHHHHccCC
Confidence 4666766655567999999999999999999999765433332 21111 467789999999999999999999999
Q ss_pred CCcccHHHHHH
Q 024804 223 ASYMDFNTVMK 233 (262)
Q Consensus 223 at~mdF~~Vl~ 233 (262)
+++|||++|++
T Consensus 160 at~~dF~~V~~ 170 (170)
T PF04727_consen 160 ATIMDFNKVLK 170 (170)
T ss_pred CCHHHHHhhcC
Confidence 99999999975
No 3
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=99.96 E-value=4.9e-29 Score=240.12 Aligned_cols=195 Identities=28% Similarity=0.495 Sum_probs=176.3
Q ss_pred CCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCCccc-----------chhhhhhHhHhcCCC-CCCCCC
Q 024804 58 SFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEEL-----------RDLISEQWKEMGWQG-KDPSTD 125 (262)
Q Consensus 58 ~~~L~~~Q~~~L~~L~~~~~~~~D~~n~~H~~~L~~Lw~~~~p~~~~-----------~~~~~~~Wk~lGFQg-~dP~TD 125 (262)
..+|+.+|...+..+..|+.++.|+.+.+..+.++++-..+|.++.. .....+..|.+||-. .||+.|
T Consensus 275 ~~~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~~lr~iaf~~~~~~~~~g~~~e~rk~l~~~~ykklgf~n~~npa~d 354 (713)
T KOG2999|consen 275 PIQLYVLQVLTLGLLEVRMRTKMDPQDQVQRELISELRRIAFDDESEPSRRGGGAEVRKILDIESYKKLGFENRINPAQD 354 (713)
T ss_pred hHHHHHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHhcCcccccccccCCcchhhhhhhhHHHHHhhcccccCChHHh
Confidence 35789999999999999999999999999999999999999876421 245678999999999 999999
Q ss_pred CC--cchhhhHhHHHHHHHhcH----HHHHHhhCCCCCCCCchHHHhHHHHHHHHHHhhhccCCCccccccchhcccccc
Q 024804 126 FR--GGGFISLENLLYLARNFP----DLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSEN 199 (262)
Q Consensus 126 FR--g~GiLgL~~LlyF~~~~~----~ll~~~~s~~~~~~yPFAvagINiT~~L~~~L~~~~~~~~~~~~~~f~~ll~~~ 199 (262)
|- ..|+|+|+||+|||++|| +++.++.++.+.++|||+.++|.+|.|||++|+.+.+ .......|.+++|.+
T Consensus 355 f~etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhecpfgr~sieltk~lcEilrVge~--p~E~~~df~pmfFth 432 (713)
T KOG2999|consen 355 FGETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHECPFGRMSIELTKILCELLRVGEP--PDELDRDFIPMFFTH 432 (713)
T ss_pred cccCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcCCcCccHHHHHHHHHHHHhcCCC--chhhcCccceeeecC
Confidence 97 779999999999999999 6899999999999999999999999999999999763 444456799999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcccCcCCcCCCC
Q 024804 200 ESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLP 255 (262)
Q Consensus 200 ~~~F~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~qL~r~L~~~~~~~i~d~~ 255 (262)
+..|+++||+|.++|+++|++|+||-.||++|+.+||+||.|+|..+ +++++++.
T Consensus 433 d~~Fee~FciciqLlnkTWKEMrAt~edf~KVmqVVrEQl~r~L~~k-p~sld~fk 487 (713)
T KOG2999|consen 433 DTPFEELFCICVQLLNRTWKEMRATAEDFEKVMQVVREQLRRALKRK-PQSLDQFK 487 (713)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHHhccC-CccHHHHH
Confidence 99999999999999999999999999999999999999999999976 77777654
No 4
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=35.92 E-value=45 Score=31.75 Aligned_cols=74 Identities=24% Similarity=0.330 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCCcccchhhhhhHh-------------HhcCCCCCCCCCCC-
Q 024804 62 TPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWK-------------EMGWQGKDPSTDFR- 127 (262)
Q Consensus 62 ~~~Q~~~L~~L~~~~~~~~D~~n~~H~~~L~~Lw~~~~p~~~~~~~~~~~Wk-------------~lGFQg~dP~TDFR- 127 (262)
...+++++++.+...+..|+-++++-+.+..-+ ..+.|. ..+.+|| .|||-.+.|+||--
T Consensus 35 E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i-~~s~ph-----~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK 108 (350)
T KOG4404|consen 35 EARERERLERRLANLKRKYNLSEEDYRELERVI-LKSEPH-----KAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGK 108 (350)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHH-HhcCcc-----ccccccccCcceEEEEEEEeeeccCCCCCCCcCce
Confidence 445777888888888999998887776655544 333333 4567887 58999999999943
Q ss_pred ----cchhhhHhH-HHHHH
Q 024804 128 ----GGGFISLEN-LLYLA 141 (262)
Q Consensus 128 ----g~GiLgL~~-LlyF~ 141 (262)
.-|++|.-. |+.|-
T Consensus 109 ~Fcm~Yal~Gipl~lvmFq 127 (350)
T KOG4404|consen 109 AFCMFYALVGIPLTLVMFQ 127 (350)
T ss_pred ehhhhHHHhcCchHHHHHH
Confidence 335666543 44443
No 5
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=35.91 E-value=15 Score=17.08 Aligned_cols=6 Identities=50% Similarity=1.248 Sum_probs=4.6
Q ss_pred HhcCCC
Q 024804 114 EMGWQG 119 (262)
Q Consensus 114 ~lGFQg 119 (262)
.|||||
T Consensus 3 smgf~g 8 (10)
T PF08262_consen 3 SMGFHG 8 (10)
T ss_pred cccccc
Confidence 478987
No 6
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=33.17 E-value=71 Score=23.66 Aligned_cols=31 Identities=35% Similarity=0.449 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 024804 61 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALW 95 (262)
Q Consensus 61 L~~~Q~~~L~~L~~~~~~~~D~~n~~H~~~L~~Lw 95 (262)
|+..|+..|..|+...++ +|.+|...|.++-
T Consensus 26 lsweke~lLt~Lr~~L~I----S~e~H~~~l~~~~ 56 (73)
T PF03735_consen 26 LSWEKEKLLTELRKELNI----SDEEHREELRRAV 56 (73)
T ss_dssp --HHHHHHHHHHHHHTT------HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHh
Confidence 899999999999887766 4888988888773
No 7
>PHA02819 hypothetical protein; Provisional
Probab=32.35 E-value=68 Score=23.72 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 024804 204 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLER 241 (262)
Q Consensus 204 ~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~qL~r 241 (262)
++||+++|=.| |..+--||+..++.+|+-|..
T Consensus 2 DKLYaaiFGvF------msS~DdDFnnFI~VVksVLtd 33 (71)
T PHA02819 2 DKLYSAIFGVF------MSSSDDDFNNFINVVKSVLNN 33 (71)
T ss_pred hhHHHHHHHhh------hCCchhHHHHHHHHHHHHHcC
Confidence 67999999888 667778999999999887765
No 8
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=30.38 E-value=20 Score=27.19 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=15.5
Q ss_pred HhhcccCCCCCHHHHHHHHHHHHHhCCCc
Q 024804 74 LRIDVAYDSSIPEHREALRALWNAAFPDE 102 (262)
Q Consensus 74 ~~~~~~~D~~n~~H~~~L~~Lw~~~~p~~ 102 (262)
....-.+||.|++ +++|++||+.+..++
T Consensus 40 dyLA~~vdP~N~E-erlLkELW~va~e~E 67 (81)
T PF11588_consen 40 DYLAKNVDPKNPE-ERLLKELWDVADEEE 67 (81)
T ss_dssp HHHHT-----SHH-HHHHHHHHHC--HHH
T ss_pred HHHHhcCCCCCHH-HHHHHHHHHhCCHHH
Confidence 3455678999975 689999999976543
No 9
>PHA02650 hypothetical protein; Provisional
Probab=29.88 E-value=61 Score=24.51 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh
Q 024804 204 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 242 (262)
Q Consensus 204 ~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~qL~r~ 242 (262)
++||+++|=.| |..+--||+..++.+|+-|...
T Consensus 2 DKLYaaiFGVF------msS~DdDFnnFI~VVkSVLtD~ 34 (81)
T PHA02650 2 DKLYAAIFGVF------MSSTDDDFNNFIDVVKSVLSDE 34 (81)
T ss_pred hhHHHHHHhhh------cCCcHHHHHHHHHHHHHHHcCC
Confidence 67999999887 6677789999999998777553
No 10
>PHA02844 putative transmembrane protein; Provisional
Probab=27.64 E-value=85 Score=23.45 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh
Q 024804 204 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 242 (262)
Q Consensus 204 ~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~qL~r~ 242 (262)
++||+++|=.| |..+--||+..++.+|+-|...
T Consensus 2 DKLYaaiFGVF------msS~DdDFnnFI~vVksVLtd~ 34 (75)
T PHA02844 2 DKLYTAIFGVF------LSSENEDFNNFIDVVKSVLSDD 34 (75)
T ss_pred hhHHHHHHhhh------cCCchHHHHHHHHHHHHHHcCC
Confidence 67999999887 6677789999999998777543
No 11
>PHA02975 hypothetical protein; Provisional
Probab=27.32 E-value=91 Score=22.93 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 024804 204 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLER 241 (262)
Q Consensus 204 ~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~qL~r 241 (262)
++||+++|-.| |..+--||+..++.+|+-|..
T Consensus 2 dKLYaaiFGvF------msS~DdDF~nFI~vVksVLtd 33 (69)
T PHA02975 2 EKLFTGTYGVF------LESNDSDFEDFIDTIMHVLTG 33 (69)
T ss_pred hhHHHHHHHhh------cCCChHHHHHHHHHHHHHHcC
Confidence 67899999887 666778999999988876654
No 12
>PHA02692 hypothetical protein; Provisional
Probab=22.39 E-value=1.3e+02 Score=22.26 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh
Q 024804 204 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 242 (262)
Q Consensus 204 ~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~qL~r~ 242 (262)
++||+++|=.| +..+-.||+..++.+|+-|...
T Consensus 2 DKLyaaifGVF------mss~DdDF~~Fi~vVksVLtDk 34 (70)
T PHA02692 2 DKLYAGVFGSF------LSNSDEDFEEFLNIVRTVMTEK 34 (70)
T ss_pred hhHHHHHHHhh------cCCCHHHHHHHHHHHHHHHcCC
Confidence 67899999887 4445559999999998877654
No 13
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.30 E-value=74 Score=31.67 Aligned_cols=49 Identities=18% Similarity=0.443 Sum_probs=40.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhcccCC----CCCHHHHHHHHHHHHHhCCC
Q 024804 53 SDPRPSFDLTPAQEECLQRLQLRIDVAYD----SSIPEHREALRALWNAAFPD 101 (262)
Q Consensus 53 ~~~~~~~~L~~~Q~~~L~~L~~~~~~~~D----~~n~~H~~~L~~Lw~~~~p~ 101 (262)
++.....+|...-.+.++.|-+.+++.|+ .+||.|+...+++|..++.+
T Consensus 98 tnG~~P~e~cDr~s~~f~qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~kn 150 (578)
T KOG0436|consen 98 TNGRNPPELCDRISQSFRQLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKN 150 (578)
T ss_pred hcCCChHHHHhhhhHHHHHHHHHhCcchhheeecCCchHHHHHHHHHHHHHhC
Confidence 34444677888888899999999999986 57999999999999998754
Done!