Query 024804
Match_columns 262
No_of_seqs 164 out of 400
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 14:42:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o39_A Periplasmic protein rel 37.9 49 0.0017 25.1 4.9 39 59-97 16-54 (108)
2 1uz3_A EMSY protein; chromatin 36.8 40 0.0014 25.6 4.2 30 61-94 43-72 (102)
3 3d0w_A YFLH protein; GRAM-posi 29.3 21 0.00073 27.2 1.5 28 74-102 62-89 (104)
4 2fmm_E Protein EMSY; ENT domai 28.8 61 0.0021 25.7 4.2 48 61-116 35-90 (133)
5 2k19_A Putative piscicolin 126 23.7 56 0.0019 24.6 2.9 22 59-80 75-96 (98)
6 2zrr_A Mundticin KS immunity p 20.5 53 0.0018 25.5 2.3 22 59-80 95-116 (118)
7 3itf_A Periplasmic adaptor pro 20.5 1.1E+02 0.0038 24.3 4.3 46 56-101 41-86 (145)
8 3oeo_A Spheroplast protein Y; 14.9 1.3E+02 0.0044 23.5 3.4 40 58-97 31-70 (138)
9 2hwv_A DNA-binding response re 14.7 74 0.0025 23.9 1.9 36 58-98 41-76 (121)
10 3lay_A Zinc resistance-associa 11.6 1.3E+02 0.0043 24.8 2.5 44 59-102 66-112 (175)
No 1
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=37.95 E-value=49 Score=25.13 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHH
Q 024804 59 FDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNA 97 (262)
Q Consensus 59 ~~L~~~Q~~~L~~L~~~~~~~~D~~n~~H~~~L~~Lw~~ 97 (262)
++||..|+..++.|.+......+....+-.+.|..|-.+
T Consensus 16 L~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~Li~a 54 (108)
T 3o39_A 16 LNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIAS 54 (108)
T ss_dssp SCCCHHHHHHHHHHHHTTTTSCCCCCHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhcc
Confidence 789999999999999877777665555555555555433
No 2
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=36.82 E-value=40 Score=25.58 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHH
Q 024804 61 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRAL 94 (262)
Q Consensus 61 L~~~Q~~~L~~L~~~~~~~~D~~n~~H~~~L~~L 94 (262)
||..|+..|..|++..++ +|.+|...|.++
T Consensus 43 Lsweke~LLt~LR~~L~I----S~eeH~~elrr~ 72 (102)
T 1uz3_A 43 LTKEKKDLLGELSKVLSI----STERHRAEVRRA 72 (102)
T ss_dssp CCHHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC----CcHHHHHHHHHh
Confidence 899999999999876655 588998888776
No 3
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=29.27 E-value=21 Score=27.20 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=21.6
Q ss_pred HhhcccCCCCCHHHHHHHHHHHHHhCCCc
Q 024804 74 LRIDVAYDSSIPEHREALRALWNAAFPDE 102 (262)
Q Consensus 74 ~~~~~~~D~~n~~H~~~L~~Lw~~~~p~~ 102 (262)
..+--.+||.|++ +++|++||+.+..++
T Consensus 62 dyLA~~vdP~N~E-erlLkELW~Va~eeE 89 (104)
T 3d0w_A 62 DYLAKHEEPQNGE-EMLLQELWSVADEDE 89 (104)
T ss_dssp HHHHTCCCCCSHH-HHHHHHHHHHCCHHH
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCHHH
Confidence 3455678999974 789999999976543
No 4
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=28.82 E-value=61 Score=25.70 Aligned_cols=48 Identities=29% Similarity=0.413 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCCccc--------chhhhhhHhHhc
Q 024804 61 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEEL--------RDLISEQWKEMG 116 (262)
Q Consensus 61 L~~~Q~~~L~~L~~~~~~~~D~~n~~H~~~L~~Lw~~~~p~~~~--------~~~~~~~Wk~lG 116 (262)
||..|+..|..|++..++ ++.+|...|.++-+. +.+ .+..+.+|..-|
T Consensus 35 LSweke~LLt~LR~~L~I----S~eeH~~elrr~~sD----e~l~~I~~~~~g~~s~~~W~~eg 90 (133)
T 2fmm_E 35 LTKEKKDLLGELSKVLSI----STERHRAEVRRAVND----ERLTTIAHNMSGPNSSSEWSIEG 90 (133)
T ss_dssp CCHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHC----HHHHHHHHHHHCSCCSHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCC----CcHHHHHHHHHhhhH----HHHHHHHHhhcCCcchHHHHHcc
Confidence 899999999999876655 588999888776432 211 123456888776
No 5
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=23.66 E-value=56 Score=24.59 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHHhhcccC
Q 024804 59 FDLTPAQEECLQRLQLRIDVAY 80 (262)
Q Consensus 59 ~~L~~~Q~~~L~~L~~~~~~~~ 80 (262)
..||+.|++.|+.|++..++-|
T Consensus 75 i~Ls~~qs~~lK~Lr~Ls~IRY 96 (98)
T 2k19_A 75 VTLSDYQSKKLKELTSISNIRY 96 (98)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCT
T ss_pred cccCHHHHHHHHHHHHHHhhhc
Confidence 4599999999999999888765
No 6
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=20.53 E-value=53 Score=25.53 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=16.3
Q ss_pred CCCCHHHHHHHHHHHHhhcccC
Q 024804 59 FDLTPAQEECLQRLQLRIDVAY 80 (262)
Q Consensus 59 ~~L~~~Q~~~L~~L~~~~~~~~ 80 (262)
+.||+.|++.|+.|++..++-|
T Consensus 95 I~LS~~qs~~LK~Lr~LSnIRY 116 (118)
T 2zrr_A 95 VSLNENQSKKLKELMSISNIRY 116 (118)
T ss_dssp CCCCHHHHHHHHHHHTTC----
T ss_pred cccCHHHHHHHHHHHHHHhhhc
Confidence 4599999999999999887765
No 7
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=20.49 E-value=1.1e+02 Score=24.34 Aligned_cols=46 Identities=17% Similarity=0.070 Sum_probs=30.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCC
Q 024804 56 RPSFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPD 101 (262)
Q Consensus 56 ~~~~~L~~~Q~~~L~~L~~~~~~~~D~~n~~H~~~L~~Lw~~~~p~ 101 (262)
...++||+.|+..|+.|.+........-+.+..+.|..|...-..+
T Consensus 41 ~~~L~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li~ad~fD 86 (145)
T 3itf_A 41 FDGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTAENFD 86 (145)
T ss_dssp TTTCCCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCSSCC
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHccCCCC
Confidence 3358899999999999987655544444555566666665443333
No 8
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=14.91 E-value=1.3e+02 Score=23.50 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHH
Q 024804 58 SFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNA 97 (262)
Q Consensus 58 ~~~L~~~Q~~~L~~L~~~~~~~~D~~n~~H~~~L~~Lw~~ 97 (262)
.++||+.|+..|+.|.+...........+-.+.|..|...
T Consensus 31 ~L~LT~eQ~~qir~i~~~~r~~~~~~~~~~r~~l~~Li~a 70 (138)
T 3oeo_A 31 DLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIITS 70 (138)
T ss_dssp CSCCCTTHHHHHHHHHHHHSSSSCCCCTTHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4789999999999998877666554434444566666444
No 9
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=14.66 E-value=74 Score=23.91 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHh
Q 024804 58 SFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAA 98 (262)
Q Consensus 58 ~~~L~~~Q~~~L~~L~~~~~~~~D~~n~~H~~~L~~Lw~~~ 98 (262)
...||+.+...|..|....+..+. .++++..+|..-
T Consensus 41 ~i~Lt~~E~~LL~~L~~~~g~vvs-----re~L~~~vW~~~ 76 (121)
T 2hwv_A 41 KIELTHREFELLYYLAKHIGQVMT-----REHLLQTVWGYD 76 (121)
T ss_dssp EEECCHHHHHHHHHHHHTTTCCBC-----HHHHHHHHTCGG
T ss_pred EEECCHHHHHHHHHHHHcCCeEEc-----HHHHHHHHcCCC
Confidence 367999999999998877666554 567888999754
No 10
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=11.62 E-value=1.3e+02 Score=24.77 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHhhcccCCC---CCHHHHHHHHHHHHHhCCCc
Q 024804 59 FDLTPAQEECLQRLQLRIDVAYDS---SIPEHREALRALWNAAFPDE 102 (262)
Q Consensus 59 ~~L~~~Q~~~L~~L~~~~~~~~D~---~n~~H~~~L~~Lw~~~~p~~ 102 (262)
.+||+.|...++.|++.......+ .-...+..|++|+..-.|++
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~De 112 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDT 112 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 679999999999997654433221 12334555666665544553
Done!