Query 024804
Match_columns 262
No_of_seqs 164 out of 400
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 14:42:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024804.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024804hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uz3a1 a.283.1.1 (A:13-102) E 29.6 31 0.0022 23.9 4.2 31 60-94 30-60 (90)
2 d1ya0a1 a.118.8.1 (A:1-497) SM 19.1 1.4E+02 0.01 25.2 7.7 71 160-246 217-287 (497)
3 d2c1wa1 d.294.1.1 (A:6-289) En 15.3 92 0.0067 25.6 5.0 58 81-143 124-181 (284)
4 d1w36b1 c.37.1.19 (B:1-485) Ex 11.2 36 0.0026 28.2 1.2 40 82-123 388-428 (485)
5 d2a61a1 a.4.5.28 (A:5-143) Tra 9.7 1.7E+02 0.012 20.0 4.5 79 164-242 56-138 (139)
6 d2ifta1 c.66.1.46 (A:11-193) P 9.5 48 0.0035 24.8 1.2 20 126-145 51-76 (183)
7 d1olma1 a.5.3.1 (A:1-75) Super 9.4 92 0.0067 19.7 2.5 20 59-78 6-25 (75)
8 d1myta_ a.1.1.2 (A:) Myoglobin 9.4 2.6E+02 0.019 19.3 5.6 14 106-119 133-146 (146)
9 d1i39a_ c.55.3.1 (A:) Class II 7.6 1E+02 0.0075 23.0 2.5 41 33-73 8-53 (200)
10 d1knza_ e.34.1.1 (A:) NSP3 hom 6.8 4.3E+02 0.032 19.1 6.5 45 202-247 8-52 (157)
No 1
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.56 E-value=31 Score=23.86 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHH
Q 024804 60 DLTPAQEECLQRLQLRIDVAYDSSIPEHREALRAL 94 (262)
Q Consensus 60 ~L~~~Q~~~L~~L~~~~~~~~D~~n~~H~~~L~~L 94 (262)
+|+..|+..|..|++... .+|.+|...|.++
T Consensus 30 ~lsweke~lLt~LR~~L~----IS~eeHr~elrr~ 60 (90)
T d1uz3a1 30 DLTKEKKDLLGELSKVLS----ISTERHRAEVRRA 60 (90)
T ss_dssp SCCHHHHHHHHHHHHHTT----CCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHh
Confidence 389999999999887655 5688999888776
No 2
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.13 E-value=1.4e+02 Score=25.18 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=41.5
Q ss_pred CchHHHhHHHHHHHHHHhhhccCCCccccccchhcccccchhhHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHH
Q 024804 160 YPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQL 239 (262)
Q Consensus 160 yPFAvagINiT~~L~~~L~~~~~~~~~~~~~~f~~ll~~~~~~F~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~qL 239 (262)
=||+.|--|+..++-...+.....+.......| ...|-.+++..|. +.+..+|..+.+.+.+++
T Consensus 217 ~~~~~a~~nL~~~~~~~~~~~~~~~~~~~~~~~-------~~~f~~~~~~l~~---------~~~~~~~~~~~~~~~~~l 280 (497)
T d1ya0a1 217 FPFPAASTNLQKALSKALESRDEVKTKWGVSDF-------IKAFIKFHGHVYL---------SKSLEKLSPLREKLEEQF 280 (497)
T ss_dssp BCCHHHHHHHHHHHHHHTTSCCCCCSSCCHHHH-------HHHHHHHHHHHHH---------TCCGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhhhhhhccccccchH-------HHHHHHHHHHHHh---------CCchhhHHHHHHHHHHHH
Confidence 377888888887766555432221111111111 1244444444432 567788999999999988
Q ss_pred HHhhccc
Q 024804 240 ERELLLE 246 (262)
Q Consensus 240 ~r~L~~~ 246 (262)
...+...
T Consensus 281 ~~~l~~~ 287 (497)
T d1ya0a1 281 KELLFQK 287 (497)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 8887653
No 3
>d2c1wa1 d.294.1.1 (A:6-289) EndoU {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=15.31 E-value=92 Score=25.57 Aligned_cols=58 Identities=14% Similarity=0.245 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccchhhhhhHhHhcCCCCCCCCCCCcchhhhHhHHHHHHHh
Q 024804 81 DSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARN 143 (262)
Q Consensus 81 D~~n~~H~~~L~~Lw~~~~p~~~~~~~~~~~Wk~lGFQg~dP~TDFRg~GiLgL~~LlyF~~~ 143 (262)
..+..+..+.|++||=..+....-....+.-++.+ |=|+. -||.++.|+.|-++|...
T Consensus 124 ~~s~~~Fk~~L~~lWF~~Y~R~~g~~~dSSgFEHV-FvGE~----k~g~~V~G~HNWi~fy~~ 181 (284)
T d2c1wa1 124 KPTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHV-FVGES----KRGQEMMGLHNWVQFYLQ 181 (284)
T ss_dssp CSSHHHHHHHHHHHHHSCBCC--CCCCCBCHHHHH-TTSCS----SSSCSCCCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHhcccCcccCCCCCCCCCCcceE-eeccc----cCCCcccceehHHHHHHH
Confidence 44567799999999999887542222345677777 76641 267789999999988853
No 4
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.22 E-value=36 Score=28.24 Aligned_cols=40 Identities=23% Similarity=0.522 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccchhhhhhHhHh-cCCCCCCC
Q 024804 82 SSIPEHREALRALWNAAFPDEELRDLISEQWKEM-GWQGKDPS 123 (262)
Q Consensus 82 ~~n~~H~~~L~~Lw~~~~p~~~~~~~~~~~Wk~l-GFQg~dP~ 123 (262)
.+|+.+.++|+.||... ++..+ -.+|+.|..| ||.|.||.
T Consensus 388 Dts~~Q~~ll~~L~~~~-~~~~l-~~VGD~kQSIY~FRgad~~ 428 (485)
T d1w36b1 388 DTDPQQYRIFRRIWHHQ-PETAL-LLIGDPKQAIYAFRGADIF 428 (485)
T ss_dssp GCCHHHHHHHHHHHTTC-TTCEE-EEEECGGGCCCGGGTCCHH
T ss_pred cCCHHHHHHHHHHHhCC-CCCeE-EEEecCcchhccccCCCHH
Confidence 36788889999998642 12112 1378899977 89998874
No 5
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=9.75 E-value=1.7e+02 Score=20.00 Aligned_cols=79 Identities=13% Similarity=0.081 Sum_probs=47.5
Q ss_pred HHhHHHHHHHHHHhhhccCCCc---cccccchhcccccchhhHHHHHHHHHHHHHHHHHhCC-CCcccHHHHHHHHHHHH
Q 024804 164 VAGVNITFMLIQMLDLEAVKPR---TMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMR-ASYMDFNTVMKSTRRQL 239 (262)
Q Consensus 164 vagINiT~~L~~~L~~~~~~~~---~~~~~~f~~ll~~~~~~F~eLy~~~F~~f~~~W~~~~-at~mdF~~Vl~~~r~qL 239 (262)
+..-+||.++-.+.+.+-.... ...+...+.+-......+.++....-......+.... .....|..++..+...+
T Consensus 56 i~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~l 135 (139)
T d2a61a1 56 VAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIERRENFIEKITSDLGKEKSSKILDYLKELKGVM 135 (139)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3445678888777776532111 1112333333323344566666666666666676644 56778999999998888
Q ss_pred HHh
Q 024804 240 ERE 242 (262)
Q Consensus 240 ~r~ 242 (262)
++-
T Consensus 136 e~~ 138 (139)
T d2a61a1 136 ERN 138 (139)
T ss_dssp HHH
T ss_pred hcc
Confidence 764
No 6
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=9.51 E-value=48 Score=24.75 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=15.8
Q ss_pred CCcchhhhHhHHH------HHHHhcH
Q 024804 126 FRGGGFISLENLL------YLARNFP 145 (262)
Q Consensus 126 FRg~GiLgL~~Ll------yF~~~~~ 145 (262)
|-|+|.+||++|- +|++..+
T Consensus 51 FaGsG~~glEalSRGA~~v~fVE~~~ 76 (183)
T d2ifta1 51 FAGSGSLGFEALSRQAKKVTFLELDK 76 (183)
T ss_dssp TCTTCHHHHHHHHTTCSEEEEECSCH
T ss_pred ccCccceeeeeeeecceeeEEeeccc
Confidence 6789999999984 4666666
No 7
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.39 E-value=92 Score=19.69 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=16.3
Q ss_pred CCCCHHHHHHHHHHHHhhcc
Q 024804 59 FDLTPAQEECLQRLQLRIDV 78 (262)
Q Consensus 59 ~~L~~~Q~~~L~~L~~~~~~ 78 (262)
-+||+.|+..|..+++...-
T Consensus 6 gelt~~q~~~l~elr~~l~~ 25 (75)
T d1olma1 6 GDLSPRQKEALAKFRENVQD 25 (75)
T ss_dssp TBCCHHHHHHHHHHHHHHGG
T ss_pred ccCCHHHHHHHHHHHHHHHh
Confidence 35899999999999887643
No 8
>d1myta_ a.1.1.2 (A:) Myoglobin {Yellowfin tuna (Thunnus albacares) [TaxId: 8236]}
Probab=9.39 E-value=2.6e+02 Score=19.25 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=10.4
Q ss_pred hhhhhhHhHhcCCC
Q 024804 106 DLISEQWKEMGWQG 119 (262)
Q Consensus 106 ~~~~~~Wk~lGFQg 119 (262)
....+.+++.||+|
T Consensus 133 ~~l~~~y~e~g~~~ 146 (146)
T d1myta_ 133 ADLEANYKELGFSG 146 (146)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHcCCCC
Confidence 44578899999986
No 9
>d1i39a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.59 E-value=1e+02 Score=22.98 Aligned_cols=41 Identities=22% Similarity=0.170 Sum_probs=29.9
Q ss_pred ccchhhhccccccccccc-----cCCCCCCCCCCCHHHHHHHHHHH
Q 024804 33 AGSAAWLGRGLSCVCAQR-----RESDPRPSFDLTPAQEECLQRLQ 73 (262)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~L~~~Q~~~L~~L~ 73 (262)
+|.|.|+|-...|.|.-. +......|-.||+.|++.|....
T Consensus 8 aGrG~~~GPvvvaav~~~~~~~~~~~gv~DSK~Ls~~kr~~l~~~I 53 (200)
T d1i39a_ 8 AGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEI 53 (200)
T ss_dssp ECTTCSBSCEEEEEEEESCHHHHHHTTCTTCTTCCHHHHHHHHHHH
T ss_pred cCCCCcccceEEEEEEECchhccccccchhhhcCCHHHHHHHHHHH
Confidence 589999997776665432 23456778899999999986644
No 10
>d1knza_ e.34.1.1 (A:) NSP3 homodimer {Simian 11 rotavirus [TaxId: 10923]}
Probab=6.82 E-value=4.3e+02 Score=19.13 Aligned_cols=45 Identities=7% Similarity=0.116 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcccC
Q 024804 202 AFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLED 247 (262)
Q Consensus 202 ~F~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~qL~r~L~~~~ 247 (262)
.|+.-|.+++......-..++.+| ||++|...++....-.+....
T Consensus 8 I~n~af~aA~~~~~s~l~~~gi~y-D~~ev~~r~k~k~d~~mdDSG 52 (157)
T d1knza_ 8 IINSSFEAAVVAATSALENMGIEY-DYQDIYSRVKNKFDFVMDDSG 52 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhhHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHhhcceecchh
Confidence 466667777777777777777664 799999888887766654433
Done!