BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024806
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
Query: 173 KLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIF 225
++LP+ G I+ A+E G+K+ + SNEK V L ++AEKIQIF
Sbjct: 519 EVLPI-GGATPAIEAAIEAGIKMVIIPKSNEKDV------FLSKDKAEKIQIF 564
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 26/164 (15%)
Query: 78 SALLFDCDGVLVDTEKDGHRISFNDTFKEKE-LGVTWDVDLYGELLKIGGGKERMTAYFN 136
A++FD DGVL DTE + F + E G + DL+ +I G ER
Sbjct: 2 EAVIFDXDGVLXDTEP----LYFEAYRRVAESYGKPYTEDLHR---RIXGVPER------ 48
Query: 137 KTGWP--EKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVK 194
G P +A ++ + F +H+ K +F +LL PGV + ++ K +K
Sbjct: 49 -EGLPILXEALEIKDSLENFKKRVHEEKKRVF-----SELLKENPGVREALEFVKSKRIK 102
Query: 195 VAVC-STSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDP 237
+A+ ST +A+ + L E+ + +F GD V KPDP
Sbjct: 103 LALATSTPQREALERLRRLDL--EKYFDVXVF-GDQVKNGKPDP 143
>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
pdb|3NAS|B Chain B, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
Length = 233
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 33/135 (24%)
Query: 79 ALLFDCDGVLVDTEK----------DGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGK 128
A++FD DGV+ DT + + I F+ E+ G++ + L E + I GG
Sbjct: 4 AVIFDLDGVITDTAEYHFLAWKHIAEQIDIPFDRDXNERLKGISREESL--ESILIFGGA 61
Query: 129 ERMTAYFNKTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLP--LRPGVAKLID 186
E T Y N E+++ L RK + LI KL P L PG+ +L+
Sbjct: 62 E--TKYTNA------------EKQE----LXHRKNRDYQXLI-SKLTPEDLLPGIGRLLC 102
Query: 187 QALEKGVKVAVCSTS 201
Q + +K+ + S+S
Sbjct: 103 QLKNENIKIGLASSS 117
>pdb|2HI0|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
pdb|2HI0|B Chain B, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
Length = 240
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 59/155 (38%), Gaps = 31/155 (20%)
Query: 79 ALLFDCDGVLVDT------------EKDGHRISFNDTFKEKELGVTWDVDLYGEL-LKIG 125
A +FD DG ++DT E+ GHR F + G V + L + G
Sbjct: 6 AAIFDXDGTILDTSADLTSALNYAFEQTGHRHDFTVEDIKNFFGSGVVVAVTRALAYEAG 65
Query: 126 GGKERMTAYFNKTGW-PEKAPSDEEER-----KQFIASLHKRKTELFMVLIEKKLLPLRP 179
+E + A+ K PE E R K + A + KT F P
Sbjct: 66 SSRESLVAFGTKDEQIPEAVTQTEVNRVLEVFKPYYADHCQIKTGPF------------P 113
Query: 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLL 214
G+ L +KGVK+AV S +AV +V L
Sbjct: 114 GILDLXKNLRQKGVKLAVVSNKPNEAVQVLVEELF 148
>pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12
pdb|1TE2|B Chain B, Putative Phosphatase Ynic From Escherichia Coli K12
Length = 226
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 14/123 (11%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKT 138
A +FD DG+L+D+E R + LGV D+ EL G +
Sbjct: 11 AAIFDXDGLLIDSEPLWDRAELD---VXASLGV--DISRRNELPDTLGLRIDXVVDLWYA 65
Query: 139 GWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVC 198
P PS +E ++ IA + L+E+ PL PGV + + E+G+ V +
Sbjct: 66 RQPWNGPSRQEVVERVIAR--------AISLVEET-RPLLPGVREAVALCKEQGLLVGLA 116
Query: 199 STS 201
S S
Sbjct: 117 SAS 119
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 26/171 (15%)
Query: 80 LLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTW--DVDLYGELLKIGGGKERMTAYFNK 137
+LFD DG L+D+ KD ++ T KE L + +V Y IGGG +
Sbjct: 6 ILFDLDGTLIDSAKD-IALALEKTLKELGLEEYYPDNVTKY-----IGGGVRALL----- 54
Query: 138 TGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAV 197
EK D + R++++ K E +V + P + ++ KG K+AV
Sbjct: 55 ----EKVLKD-KFREEYVEVFRKHYLENPVVYTKP-----YPEIPYTLEALKSKGFKLAV 104
Query: 198 CSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIV 248
S E+ I+ L + I GD KKP P + T++I+
Sbjct: 105 VSNKLEELSKKILDILNLSGYFD--LIVGGDTFGEKKPSPTPVLK-TLEIL 152
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 66/164 (40%), Gaps = 25/164 (15%)
Query: 80 LLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTW--DVDLYGELLKIGGGKERMTAYFNK 137
+LFD DG L+D+ KD ++ T KE L + +V Y IGGG +
Sbjct: 4 ILFDLDGTLIDSAKD-IALALEKTLKELGLEEYYPDNVTKY-----IGGGVRALL----- 52
Query: 138 TGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAV 197
EK D + R++++ K E +V + P + ++ KG K+AV
Sbjct: 53 ----EKVLKD-KFREEYVEVFRKHYLENPVVYTKP-----YPEIPYTLEALKSKGFKLAV 102
Query: 198 CSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKIC 241
S E+ I+ L + I GD KKP P +
Sbjct: 103 VSNKLEELSKKILDILNLSGYFD--LIVGGDTFGEKKPSPTPVL 144
>pdb|3L5K|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 1a (Hdhd1a)
Length = 250
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 80 LLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDV 115
L+FD DG+L+DTE+ + + F + + +WDV
Sbjct: 33 LIFDMDGLLLDTER-LYSVVFQEICNRYDKKYSWDV 67
>pdb|2AH5|A Chain A, Hydrolase, Haloacid Dehalogenase-Like Family Protein
Sp0104 From Streptococcus Pneumoniae
Length = 210
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 78 SALLFDCDGVLVDTEKDGHRISFNDTFKEKELGV 111
+A+ FD DG LVD+ H +F TF KELGV
Sbjct: 5 TAIFFDLDGTLVDSSIGIHN-AFTYTF--KELGV 35
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 141 PEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCST 200
P A + EE ++F A + L L PGV + +D+ G ++A+ ++
Sbjct: 80 PRVAEATEEYGRRFGAHVRAAGPRL-----------LYPGVLEGLDRLSAAGFRLAMATS 128
Query: 201 SNEKAVTAIVSFLLGPERAEKIQIFAG-DVVPRKKPDP 237
EKA AI L G + ++ + AG D V R KP P
Sbjct: 129 KVEKAARAIAE-LTGLD--TRLTVIAGDDSVERGKPHP 163
>pdb|2FDR|A Chain A, Crystal Structure Of Conserved Haloacid Dehalogenase-like
Protein Of Unknown Function Atu0790 From Agrobacterium
Tumefaciens Str. C58
Length = 229
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 13/46 (28%)
Query: 80 LLFDCDGVLVDTE------------KDGHRISFNDTFKEKELGVTW 113
++FDCDGVLVD+E + G+ IS + E+ G TW
Sbjct: 7 IIFDCDGVLVDSEIIAAQVESRLLTEAGYPISVEEX-GERFAGXTW 51
>pdb|2X9Z|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
Length = 262
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAI-----VSFLLG 215
G+AK+ DQ EK VK+ +T N+KA+ + V+F G
Sbjct: 99 GLAKVNDQNAEKTVKITYSATLNDKAIVEVPESNDVTFNYG 139
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFK--EKELGVTWDVDLYGELLKIGGGKERMTAYFN 136
A+LFD DGV+ DT + R +K +E+G+ + E LK G R +
Sbjct: 4 AVLFDLDGVITDTAEYHFR-----AWKALAEEIGINGVDRQFNEQLK---GVSREDSLQK 55
Query: 137 KTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEK-KLLPLRPGVAKLIDQALEKGVKV 195
+K S EE ++ L KRK + ++ +I+ + PG+ +L+ +K+
Sbjct: 56 ILDLADKKVSAEEFKE-----LAKRKNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKI 110
Query: 196 AVCSTS 201
A+ S S
Sbjct: 111 ALASAS 116
>pdb|2X9Y|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
Length = 444
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAI-----VSFLLG 215
G+AK+ DQ EK VK+ +T N+KA+ + V+F G
Sbjct: 102 GLAKVNDQNAEKTVKITYSATLNDKAIVEVPESNDVTFNYG 142
>pdb|2X9W|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
pdb|2X9X|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
Length = 444
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAI-----VSFLLG 215
G+AK+ DQ EK VK+ +T N+KA+ + V+F G
Sbjct: 102 GLAKVNDQNAEKTVKITYSATLNDKAIVEVPESNDVTFNYG 142
>pdb|2Y1V|A Chain A, Full Length Structure Of Rrgb Pilus Protein From
Streptococcus Pneumoniae
pdb|2Y1V|B Chain B, Full Length Structure Of Rrgb Pilus Protein From
Streptococcus Pneumoniae
pdb|2Y1V|C Chain C, Full Length Structure Of Rrgb Pilus Protein From
Streptococcus Pneumoniae
Length = 605
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAI-----VSFLLG 215
G+AK+ DQ EK VK+ +T N+KA+ + V+F G
Sbjct: 257 GLAKVNDQNAEKTVKITYSATLNDKAIVEVPESNDVTFNYG 297
>pdb|3RPK|A Chain A, Structure Of The Full-Length Major Pilin Rrgb From
Streptococcus Pneumoniae
pdb|3RPK|B Chain B, Structure Of The Full-Length Major Pilin Rrgb From
Streptococcus Pneumoniae
Length = 603
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAI-----VSFLLG 215
G+AK+ DQ EK VK+ +T N+KA+ + V+F G
Sbjct: 260 GLAKVNDQNAEKTVKITYSATLNDKAIVEVPESNDVTFNYG 300
>pdb|4GIB|A Chain A, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
pdb|4GIB|B Chain B, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
Length = 250
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 15/147 (10%)
Query: 57 SSANPMSMRNVRVTCSASVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVD 116
SS + N+ +A + A +FD DGV+ DT + +++ V D+D
Sbjct: 8 SSGVDLGTENLYFQSNAMI--EAFIFDLDGVITDTAYYHYM-----AWRKLAHKVGIDID 60
Query: 117 L-YGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEK-KL 174
+ E LK G RM + + K S EE K +A + K ++ LI++
Sbjct: 61 TKFNESLK---GISRMESLDRILEFGNKKYSFSEEEKVRMA---EEKNNYYVSLIDEITS 114
Query: 175 LPLRPGVAKLIDQALEKGVKVAVCSTS 201
+ PG+ L+ +K+ + S S
Sbjct: 115 NDILPGIESLLIDVKSNNIKIGLSSAS 141
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVV 230
+L + PG + + LEK KV C + + V + + G A K+Q+ GDV+
Sbjct: 32 VLEVGPGTGNMTVKLLEKAKKVVACEL-DPRLVAELHKRVQGTPVASKLQVLVGDVL 87
>pdb|3E58|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase
From Streptococcus Thermophilus
pdb|3E58|B Chain B, Crystal Structure Of Putative Beta-Phosphoglucomutase
From Streptococcus Thermophilus
Length = 214
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 79 ALLFDCDGVLVDTEK 93
A++FD DGVL DTEK
Sbjct: 7 AIIFDXDGVLFDTEK 21
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,495,535
Number of Sequences: 62578
Number of extensions: 253086
Number of successful extensions: 692
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 25
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)