Query 024806
Match_columns 262
No_of_seqs 188 out of 1076
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:32:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02779 haloacid dehalogenase 100.0 7.7E-27 1.7E-31 200.2 18.5 183 74-262 37-225 (286)
2 COG0637 Predicted phosphatase/ 99.9 2E-26 4.4E-31 190.6 14.6 164 76-262 1-165 (221)
3 PLN02770 haloacid dehalogenase 99.9 6.5E-26 1.4E-30 191.0 16.5 167 74-262 19-187 (248)
4 PRK13226 phosphoglycolate phos 99.9 1.9E-25 4.1E-30 186.1 17.2 165 75-262 10-174 (229)
5 PLN03243 haloacid dehalogenase 99.9 2.5E-25 5.4E-30 188.1 17.5 167 75-262 22-188 (260)
6 PLN02575 haloacid dehalogenase 99.9 6.4E-25 1.4E-29 192.4 18.1 166 76-262 130-295 (381)
7 PRK13288 pyrophosphatase PpaX; 99.9 1.2E-24 2.6E-29 179.4 16.7 161 75-262 1-161 (214)
8 COG0546 Gph Predicted phosphat 99.9 2.7E-24 5.9E-29 178.0 18.7 168 74-262 1-168 (220)
9 TIGR03351 PhnX-like phosphonat 99.9 2.3E-24 4.9E-29 178.4 18.0 165 77-262 1-169 (220)
10 PRK11587 putative phosphatase; 99.9 1.5E-24 3.3E-29 179.3 15.3 161 75-262 1-161 (218)
11 PRK13478 phosphonoacetaldehyde 99.9 7.3E-24 1.6E-28 180.5 19.8 169 74-262 1-182 (267)
12 TIGR01422 phosphonatase phosph 99.9 6.3E-24 1.4E-28 179.5 19.1 166 77-262 2-180 (253)
13 PRK10826 2-deoxyglucose-6-phos 99.9 4.7E-24 1E-28 176.8 16.4 166 75-262 5-171 (222)
14 TIGR01449 PGP_bact 2-phosphogl 99.9 4.4E-24 9.5E-29 175.7 15.4 163 80-262 1-164 (213)
15 TIGR02009 PGMB-YQAB-SF beta-ph 99.9 6.3E-24 1.4E-28 170.9 14.5 164 77-262 1-165 (185)
16 TIGR01990 bPGM beta-phosphoglu 99.9 1.5E-23 3.2E-28 168.8 15.6 162 79-262 1-164 (185)
17 PRK10725 fructose-1-P/6-phosph 99.9 9E-24 2E-28 170.5 14.2 163 74-262 2-165 (188)
18 PRK10563 6-phosphogluconate ph 99.9 2.4E-23 5.1E-28 172.4 14.1 164 74-262 1-165 (221)
19 TIGR02252 DREG-2 REG-2-like, H 99.9 7E-23 1.5E-27 167.4 16.5 164 78-262 1-183 (203)
20 TIGR02253 CTE7 HAD superfamily 99.9 8.8E-23 1.9E-27 168.9 16.6 164 76-262 1-173 (221)
21 PLN02940 riboflavin kinase 99.9 3E-23 6.5E-28 184.5 14.6 163 75-262 9-173 (382)
22 PRK13223 phosphoglycolate phos 99.9 1.1E-22 2.4E-27 173.4 16.4 170 75-262 11-180 (272)
23 PRK09449 dUMP phosphatase; Pro 99.9 2.4E-22 5.2E-27 166.7 15.7 165 75-262 1-174 (224)
24 TIGR01428 HAD_type_II 2-haloal 99.9 1E-22 2.2E-27 165.8 12.9 81 175-262 91-171 (198)
25 TIGR01454 AHBA_synth_RP 3-amin 99.9 2.5E-22 5.4E-27 164.5 14.6 153 80-262 1-154 (205)
26 TIGR01548 HAD-SF-IA-hyp1 haloa 99.9 2.8E-22 6E-27 163.2 14.7 173 78-262 1-184 (197)
27 PRK13222 phosphoglycolate phos 99.9 5.8E-22 1.3E-26 164.4 16.8 168 75-262 4-172 (226)
28 PRK14988 GMP/IMP nucleotidase; 99.9 3.3E-22 7.1E-27 165.9 13.1 82 174-262 91-172 (224)
29 TIGR02254 YjjG/YfnB HAD superf 99.9 1.7E-21 3.7E-26 161.3 16.8 165 77-262 1-176 (224)
30 PRK13225 phosphoglycolate phos 99.9 1.6E-21 3.5E-26 165.9 15.6 158 76-262 61-218 (273)
31 PF13419 HAD_2: Haloacid dehal 99.9 5.6E-22 1.2E-26 157.1 11.3 154 80-262 1-156 (176)
32 TIGR02247 HAD-1A3-hyp Epoxide 99.9 1.1E-21 2.3E-26 161.4 11.8 162 77-262 2-175 (211)
33 PRK06698 bifunctional 5'-methy 99.9 4E-21 8.7E-26 175.4 16.3 165 74-262 238-406 (459)
34 PLN02919 haloacid dehalogenase 99.9 1.4E-20 3.1E-25 185.5 18.2 168 74-262 72-241 (1057)
35 COG1011 Predicted hydrolase (H 99.9 6.5E-21 1.4E-25 158.4 13.4 80 175-262 98-177 (229)
36 PRK10748 flavin mononucleotide 99.8 1.9E-20 4E-25 156.9 14.5 162 75-262 8-186 (238)
37 TIGR01993 Pyr-5-nucltdase pyri 99.8 8.6E-21 1.9E-25 152.7 11.0 153 78-262 1-164 (184)
38 KOG2914 Predicted haloacid-hal 99.8 2.8E-20 6E-25 151.9 13.6 163 74-261 7-174 (222)
39 TIGR01549 HAD-SF-IA-v1 haloaci 99.8 2.1E-20 4.5E-25 146.1 12.3 140 79-262 1-140 (154)
40 TIGR01493 HAD-SF-IA-v2 Haloaci 99.8 9.7E-21 2.1E-25 151.1 7.3 150 79-262 1-162 (175)
41 TIGR01509 HAD-SF-IA-v3 haloaci 99.8 1.9E-19 4.2E-24 144.3 14.1 80 175-262 84-163 (183)
42 PRK09456 ?-D-glucose-1-phospha 99.8 1.8E-19 4E-24 146.8 11.9 81 175-262 83-164 (199)
43 KOG3085 Predicted hydrolase (H 99.8 2.1E-19 4.6E-24 147.2 9.9 171 74-262 4-191 (237)
44 PLN02811 hydrolase 99.8 2.7E-18 5.9E-23 142.1 15.2 156 84-262 1-163 (220)
45 PHA02597 30.2 hypothetical pro 99.7 4.2E-17 9.2E-22 132.6 12.3 146 76-262 1-151 (197)
46 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.7 2.7E-16 5.9E-21 127.9 13.2 86 175-262 79-169 (201)
47 TIGR00338 serB phosphoserine p 99.7 1.8E-16 4E-21 130.9 12.2 83 175-262 84-174 (219)
48 TIGR01656 Histidinol-ppas hist 99.6 1.5E-15 3.3E-20 117.8 7.0 83 175-262 26-124 (147)
49 PLN02954 phosphoserine phospha 99.6 2.7E-14 5.8E-19 118.4 13.5 153 75-262 10-175 (224)
50 TIGR01691 enolase-ppase 2,3-di 99.6 2.1E-14 4.5E-19 118.3 12.4 79 175-262 94-175 (220)
51 PRK08942 D,D-heptose 1,7-bisph 99.6 9.3E-15 2E-19 117.3 9.4 79 175-262 28-126 (181)
52 PRK09552 mtnX 2-hydroxy-3-keto 99.6 2.9E-14 6.2E-19 117.9 12.2 88 174-262 72-166 (219)
53 PRK06769 hypothetical protein; 99.5 2E-14 4.2E-19 114.6 8.7 81 175-262 27-116 (173)
54 TIGR01664 DNA-3'-Pase DNA 3'-p 99.5 3.8E-14 8.3E-19 112.0 10.0 77 177-262 43-133 (166)
55 TIGR01662 HAD-SF-IIIA HAD-supe 99.5 4.4E-14 9.6E-19 107.5 9.7 77 175-262 24-109 (132)
56 TIGR01685 MDP-1 magnesium-depe 99.5 5.8E-15 1.3E-19 116.9 4.3 81 175-262 44-136 (174)
57 TIGR00213 GmhB_yaeD D,D-heptos 99.5 1.4E-13 3E-18 110.1 9.8 79 175-262 25-129 (176)
58 TIGR01672 AphA HAD superfamily 99.5 2.8E-13 6.1E-18 112.5 11.7 64 175-240 113-180 (237)
59 PRK11133 serB phosphoserine ph 99.5 2.1E-13 4.6E-18 118.5 11.0 83 175-262 180-270 (322)
60 PRK13582 thrH phosphoserine ph 99.5 6.4E-13 1.4E-17 108.6 12.5 81 175-262 67-150 (205)
61 TIGR01489 DKMTPPase-SF 2,3-dik 99.4 2.1E-12 4.6E-17 103.8 13.1 52 175-228 71-122 (188)
62 cd01427 HAD_like Haloacid deha 99.4 2.3E-12 5E-17 97.4 8.1 81 175-262 23-119 (139)
63 TIGR03333 salvage_mtnX 2-hydro 99.3 8E-12 1.7E-16 103.0 10.8 88 175-262 69-162 (214)
64 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.3 1.8E-11 4E-16 99.7 10.9 82 175-262 86-177 (202)
65 TIGR01261 hisB_Nterm histidino 99.3 8.6E-12 1.9E-16 98.0 6.9 79 175-262 28-126 (161)
66 PRK11590 hypothetical protein; 99.3 8.9E-11 1.9E-15 96.5 12.0 127 76-217 5-137 (211)
67 KOG3109 Haloacid dehalogenase- 99.2 8.2E-11 1.8E-15 94.0 11.0 160 75-262 13-184 (244)
68 TIGR01686 FkbH FkbH-like domai 99.2 1.7E-11 3.7E-16 107.1 7.6 75 176-262 31-109 (320)
69 TIGR01488 HAD-SF-IB Haloacid D 99.2 9.1E-11 2E-15 93.4 11.2 81 175-262 72-164 (177)
70 TIGR01684 viral_ppase viral ph 99.2 4.5E-11 9.7E-16 100.8 9.5 60 179-240 149-208 (301)
71 TIGR01681 HAD-SF-IIIC HAD-supe 99.2 8.5E-12 1.8E-16 94.4 4.5 75 177-262 30-114 (128)
72 PF00702 Hydrolase: haloacid d 99.2 1.3E-11 2.9E-16 101.0 5.6 76 175-262 126-201 (215)
73 PRK05446 imidazole glycerol-ph 99.2 8E-11 1.7E-15 103.2 8.9 79 175-262 29-127 (354)
74 TIGR01663 PNK-3'Pase polynucle 99.2 1.2E-10 2.6E-15 106.9 10.4 77 177-262 198-290 (526)
75 COG0560 SerB Phosphoserine pho 99.2 4.1E-10 8.8E-15 92.4 11.6 84 175-262 76-166 (212)
76 smart00577 CPDc catalytic doma 99.1 8.7E-11 1.9E-15 91.2 6.4 77 175-262 44-121 (148)
77 TIGR02137 HSK-PSP phosphoserin 99.1 6E-10 1.3E-14 90.9 11.4 64 175-240 67-136 (203)
78 TIGR02726 phenyl_P_delta pheny 99.1 2.6E-11 5.6E-16 95.8 2.1 63 184-262 42-104 (169)
79 COG2179 Predicted hydrolase of 99.1 5.7E-10 1.2E-14 85.7 8.3 68 179-262 49-116 (175)
80 TIGR01670 YrbI-phosphatas 3-de 99.1 8.1E-11 1.8E-15 91.9 3.5 63 184-262 36-98 (154)
81 TIGR01452 PGP_euk phosphoglyco 99.0 2.5E-10 5.4E-15 97.8 4.9 78 177-262 144-225 (279)
82 PRK11009 aphA acid phosphatase 99.0 1.5E-09 3.2E-14 90.3 9.3 62 175-240 113-180 (237)
83 TIGR01544 HAD-SF-IE haloacid d 99.0 1.2E-08 2.6E-13 86.3 14.2 89 167-262 112-217 (277)
84 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.0 2.7E-10 5.8E-15 96.5 3.2 79 177-262 121-202 (257)
85 PF06888 Put_Phosphatase: Puta 98.9 8.7E-09 1.9E-13 85.3 10.6 52 174-227 69-122 (234)
86 PRK08238 hypothetical protein; 98.9 3E-08 6.4E-13 90.7 14.6 62 174-240 70-131 (479)
87 TIGR01545 YfhB_g-proteo haloac 98.9 6.4E-08 1.4E-12 79.4 14.0 46 175-220 93-139 (210)
88 PHA03398 viral phosphatase sup 98.9 9.1E-09 2E-13 87.1 8.7 51 179-231 151-201 (303)
89 TIGR01668 YqeG_hyp_ppase HAD s 98.9 5.8E-09 1.3E-13 82.8 6.5 72 175-262 42-114 (170)
90 PHA02530 pseT polynucleotide k 98.9 4.9E-09 1.1E-13 90.7 6.5 81 175-262 186-275 (300)
91 TIGR02244 HAD-IG-Ncltidse HAD 98.8 2E-07 4.3E-12 81.4 15.0 86 175-262 183-300 (343)
92 PF12689 Acid_PPase: Acid Phos 98.7 1.7E-08 3.6E-13 79.5 4.8 77 174-262 43-130 (169)
93 TIGR01533 lipo_e_P4 5'-nucleot 98.7 2.8E-07 6E-12 78.0 11.6 62 175-240 117-181 (266)
94 KOG3120 Predicted haloacid deh 98.7 4.9E-08 1.1E-12 78.3 5.9 51 175-227 83-134 (256)
95 TIGR01457 HAD-SF-IIA-hyp2 HAD- 98.6 4.3E-08 9.3E-13 82.7 3.6 78 176-262 121-201 (249)
96 COG4229 Predicted enolase-phos 98.5 8.7E-07 1.9E-11 69.2 9.1 80 174-262 101-183 (229)
97 PLN02645 phosphoglycolate phos 98.5 9.3E-08 2E-12 83.2 4.3 74 182-262 176-253 (311)
98 PF08645 PNK3P: Polynucleotide 98.5 4.9E-07 1.1E-11 70.9 7.6 76 177-262 30-124 (159)
99 KOG1615 Phosphoserine phosphat 98.5 2.9E-06 6.4E-11 67.0 11.7 44 174-217 86-129 (227)
100 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.5 2.1E-07 4.6E-12 78.1 5.4 76 175-262 23-101 (242)
101 PTZ00445 p36-lilke protein; Pr 98.5 8.8E-07 1.9E-11 71.4 8.4 82 176-262 75-184 (219)
102 PRK10444 UMP phosphatase; Prov 98.4 9E-08 2E-12 80.6 1.4 33 225-262 165-197 (248)
103 COG4359 Uncharacterized conser 98.3 7.8E-06 1.7E-10 64.0 10.6 54 175-228 72-125 (220)
104 PF12710 HAD: haloacid dehalog 98.2 1.4E-06 3.1E-11 69.9 5.0 41 179-219 92-132 (192)
105 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.2 3.8E-07 8.3E-12 76.5 -0.1 77 178-262 140-219 (242)
106 TIGR02251 HIF-SF_euk Dullard-l 98.1 5.3E-06 1.1E-10 65.3 5.0 77 175-262 41-118 (162)
107 PRK00192 mannosyl-3-phosphogly 98.0 1.5E-05 3.2E-10 68.2 7.3 40 180-219 25-64 (273)
108 PF09419 PGP_phosphatase: Mito 98.0 2.4E-05 5.1E-10 61.5 7.4 64 182-262 65-142 (168)
109 PRK10530 pyridoxal phosphate ( 98.0 6.2E-05 1.3E-09 64.0 10.3 76 177-262 138-221 (272)
110 COG0647 NagD Predicted sugar p 98.0 2.3E-05 5E-10 66.3 7.0 76 177-254 25-111 (269)
111 COG1778 Low specificity phosph 98.0 9E-06 1.9E-10 62.1 3.9 62 185-262 44-105 (170)
112 PRK01158 phosphoglycolate phos 98.0 2.8E-05 6E-10 64.5 7.2 35 183-217 27-61 (230)
113 PRK09484 3-deoxy-D-manno-octul 97.9 1.4E-05 3.1E-10 64.1 5.2 63 184-262 56-118 (183)
114 TIGR01675 plant-AP plant acid 97.9 0.00018 3.9E-09 59.4 11.6 52 174-228 118-172 (229)
115 COG0241 HisB Histidinol phosph 97.9 0.0001 2.2E-09 58.6 8.8 79 175-262 30-128 (181)
116 PRK10513 sugar phosphate phosp 97.8 9.3E-05 2E-09 62.9 8.4 36 182-217 26-61 (270)
117 PRK15126 thiamin pyrimidine py 97.8 8.1E-05 1.8E-09 63.4 7.3 18 76-93 1-18 (272)
118 TIGR01487 SPP-like sucrose-pho 97.7 0.00013 2.8E-09 60.0 7.1 38 180-217 22-59 (215)
119 PRK10976 putative hydrolase; P 97.7 0.00013 2.8E-09 62.0 7.1 18 76-93 1-18 (266)
120 COG0561 Cof Predicted hydrolas 97.7 0.00014 3E-09 61.7 7.1 37 181-217 25-61 (264)
121 PF06941 NT5C: 5' nucleotidase 97.7 0.00015 3.3E-09 58.5 6.9 40 174-213 71-117 (191)
122 TIGR01460 HAD-SF-IIA Haloacid 97.6 4.2E-05 9E-10 64.0 2.7 27 231-262 185-212 (236)
123 PF03767 Acid_phosphat_B: HAD 97.6 0.00019 4E-09 59.7 6.2 46 175-220 114-162 (229)
124 PRK12702 mannosyl-3-phosphogly 97.6 0.00028 6E-09 60.2 7.3 39 181-219 23-61 (302)
125 TIGR01680 Veg_Stor_Prot vegeta 97.6 0.0014 3E-08 55.3 11.3 52 174-228 143-197 (275)
126 COG4996 Predicted phosphatase 97.5 0.00025 5.4E-09 52.6 5.6 80 174-262 39-122 (164)
127 KOG2882 p-Nitrophenyl phosphat 97.5 0.00075 1.6E-08 57.2 8.5 26 232-262 222-247 (306)
128 TIGR02250 FCP1_euk FCP1-like p 97.4 0.00041 9E-09 54.1 5.9 54 175-230 57-111 (156)
129 PF13344 Hydrolase_6: Haloacid 97.4 0.00042 9.2E-09 50.0 5.1 52 176-229 14-68 (101)
130 TIGR01456 CECR5 HAD-superfamil 97.3 0.0002 4.4E-09 62.6 3.5 27 79-107 2-28 (321)
131 smart00775 LNS2 LNS2 domain. T 97.2 0.0021 4.6E-08 50.2 8.4 36 177-212 28-66 (157)
132 PRK03669 mannosyl-3-phosphogly 97.2 0.0011 2.4E-08 56.5 7.4 34 183-216 31-64 (271)
133 PTZ00174 phosphomannomutase; P 97.2 0.00097 2.1E-08 56.1 6.8 29 183-211 29-57 (247)
134 TIGR01482 SPP-subfamily Sucros 97.2 0.00077 1.7E-08 55.5 6.1 33 183-215 22-54 (225)
135 PLN02887 hydrolase family prot 97.2 0.0013 2.7E-08 61.9 8.1 35 182-216 331-365 (580)
136 KOG3040 Predicted sugar phosph 97.1 0.001 2.2E-08 53.5 5.6 35 177-211 24-58 (262)
137 TIGR00099 Cof-subfamily Cof su 97.1 0.0014 3.1E-08 55.2 6.9 34 183-216 23-56 (256)
138 PF05152 DUF705: Protein of un 97.1 0.0031 6.7E-08 53.2 8.6 48 179-228 145-192 (297)
139 TIGR01525 ATPase-IB_hvy heavy 97.1 0.0008 1.7E-08 63.3 5.8 46 175-220 383-429 (556)
140 TIGR01512 ATPase-IB2_Cd heavy 97.1 0.00067 1.5E-08 63.5 5.0 46 175-220 361-407 (536)
141 PF08282 Hydrolase_3: haloacid 97.1 0.0014 3.1E-08 54.3 6.3 38 179-216 18-55 (254)
142 PRK14502 bifunctional mannosyl 97.0 0.0023 5E-08 60.6 7.7 35 183-217 440-474 (694)
143 TIGR01689 EcbF-BcbF capsule bi 97.0 0.0029 6.2E-08 47.4 6.5 74 177-254 25-121 (126)
144 TIGR01511 ATPase-IB1_Cu copper 96.7 0.0023 4.9E-08 60.4 4.9 42 175-216 404-445 (562)
145 PLN02645 phosphoglycolate phos 96.4 0.0077 1.7E-07 52.5 6.2 50 177-228 45-97 (311)
146 PLN02177 glycerol-3-phosphate 96.3 0.077 1.7E-06 49.2 12.4 36 177-216 111-147 (497)
147 TIGR01522 ATPase-IIA2_Ca golgi 96.2 0.0096 2.1E-07 59.2 6.1 54 176-231 528-581 (884)
148 PRK10187 trehalose-6-phosphate 96.0 0.017 3.7E-07 49.2 6.0 36 178-213 38-74 (266)
149 TIGR02463 MPGP_rel mannosyl-3- 95.9 0.13 2.8E-06 42.1 11.0 52 199-262 146-201 (221)
150 PF08235 LNS2: LNS2 (Lipin/Ned 95.9 0.07 1.5E-06 41.5 8.6 74 177-251 28-113 (157)
151 PRK10671 copA copper exporting 95.8 0.014 3E-07 57.8 5.3 70 175-262 649-718 (834)
152 COG2503 Predicted secreted aci 95.7 0.042 9E-07 45.4 6.9 47 175-221 121-171 (274)
153 PF13242 Hydrolase_like: HAD-h 95.7 0.0052 1.1E-07 41.5 1.4 26 232-262 2-27 (75)
154 TIGR01457 HAD-SF-IIA-hyp2 HAD- 95.7 0.027 5.8E-07 47.4 5.8 50 177-228 18-70 (249)
155 TIGR01452 PGP_euk phosphoglyco 95.6 0.028 6.1E-07 48.1 5.7 50 177-228 19-71 (279)
156 TIGR01458 HAD-SF-IIA-hyp3 HAD- 95.5 0.019 4E-07 48.6 4.3 50 177-228 22-74 (257)
157 PLN02499 glycerol-3-phosphate 95.1 0.1 2.3E-06 47.8 8.0 31 184-215 101-132 (498)
158 PF11019 DUF2608: Protein of u 95.1 0.23 4.9E-06 42.0 9.5 39 175-213 80-118 (252)
159 PF03031 NIF: NLI interacting 94.6 0.04 8.6E-07 42.8 3.5 53 175-230 35-88 (159)
160 PLN02580 trehalose-phosphatase 94.4 0.092 2E-06 46.9 5.9 36 176-212 141-176 (384)
161 TIGR02471 sucr_syn_bact_C sucr 94.3 0.14 3.1E-06 42.4 6.5 63 191-262 111-181 (236)
162 PLN02423 phosphomannomutase 94.2 0.037 8.1E-07 46.5 2.8 29 76-105 5-34 (245)
163 PRK10444 UMP phosphatase; Prov 94.1 0.12 2.7E-06 43.5 5.6 51 176-228 17-70 (248)
164 COG4502 5'(3')-deoxyribonucleo 94.0 0.084 1.8E-06 39.9 3.9 43 175-220 67-111 (180)
165 PLN03017 trehalose-phosphatase 93.7 0.17 3.6E-06 44.9 6.0 33 177-210 134-166 (366)
166 TIGR01485 SPP_plant-cyano sucr 93.7 0.62 1.4E-05 39.0 9.3 64 190-262 117-189 (249)
167 PRK14501 putative bifunctional 93.5 0.17 3.6E-06 49.5 6.1 36 178-213 516-552 (726)
168 PF05761 5_nucleotid: 5' nucle 93.5 0.15 3.3E-06 46.6 5.5 52 175-228 182-242 (448)
169 PLN02151 trehalose-phosphatase 93.4 0.17 3.7E-06 44.7 5.5 35 176-211 120-154 (354)
170 KOG2630 Enolase-phosphatase E- 93.2 0.48 1E-05 39.0 7.4 74 175-261 122-202 (254)
171 PRK09484 3-deoxy-D-manno-octul 92.8 0.056 1.2E-06 43.3 1.4 16 76-91 20-35 (183)
172 PLN02205 alpha,alpha-trehalose 92.7 0.3 6.6E-06 48.4 6.6 34 179-212 619-653 (854)
173 TIGR01681 HAD-SF-IIIC HAD-supe 92.4 0.075 1.6E-06 39.9 1.7 15 78-92 1-15 (128)
174 TIGR02461 osmo_MPG_phos mannos 92.3 0.34 7.4E-06 40.1 5.7 40 178-217 17-56 (225)
175 TIGR01460 HAD-SF-IIA Haloacid 92.3 0.36 7.8E-06 40.2 5.7 51 176-228 14-68 (236)
176 TIGR02463 MPGP_rel mannosyl-3- 92.2 0.34 7.4E-06 39.7 5.5 37 180-216 20-56 (221)
177 COG1877 OtsB Trehalose-6-phosp 92.1 0.36 7.8E-06 41.0 5.6 36 176-211 40-76 (266)
178 PF05822 UMPH-1: Pyrimidine 5' 92.1 0.95 2.1E-05 37.9 7.9 58 167-226 81-138 (246)
179 PRK11033 zntA zinc/cadmium/mer 92.1 0.27 5.9E-06 48.1 5.5 44 176-219 568-611 (741)
180 KOG2469 IMP-GMP specific 5'-nu 91.9 4.1 9E-05 36.4 11.9 47 179-227 201-250 (424)
181 KOG2882 p-Nitrophenyl phosphat 90.7 0.63 1.4E-05 39.9 5.5 51 176-227 38-91 (306)
182 PF13344 Hydrolase_6: Haloacid 90.6 0.15 3.3E-06 36.6 1.5 15 80-94 1-15 (101)
183 KOG2470 Similar to IMP-GMP spe 90.5 0.7 1.5E-05 40.4 5.7 49 176-226 240-291 (510)
184 TIGR02461 osmo_MPG_phos mannos 90.2 0.44 9.6E-06 39.4 4.3 15 79-93 1-15 (225)
185 TIGR01497 kdpB K+-transporting 90.1 0.45 9.8E-06 45.8 4.7 44 176-219 446-489 (675)
186 COG2217 ZntA Cation transport 90.0 0.51 1.1E-05 45.7 5.0 46 175-220 536-581 (713)
187 TIGR01486 HAD-SF-IIB-MPGP mann 89.9 0.76 1.7E-05 38.6 5.6 39 179-217 19-57 (256)
188 PRK14010 potassium-transportin 89.6 0.59 1.3E-05 45.1 5.1 45 176-220 441-485 (673)
189 COG0731 Fe-S oxidoreductases [ 89.5 1.3 2.9E-05 38.0 6.7 37 174-213 90-127 (296)
190 PRK01122 potassium-transportin 89.3 0.61 1.3E-05 45.0 5.0 44 176-219 445-488 (679)
191 PRK10530 pyridoxal phosphate ( 88.8 0.99 2.2E-05 38.0 5.5 40 178-217 22-61 (272)
192 TIGR01484 HAD-SF-IIB HAD-super 88.6 0.31 6.7E-06 39.4 2.1 27 231-262 159-185 (204)
193 COG5663 Uncharacterized conser 88.5 2.5 5.4E-05 33.2 6.8 33 178-211 74-106 (194)
194 PF03031 NIF: NLI interacting 87.7 0.26 5.6E-06 38.2 1.1 17 78-94 1-17 (159)
195 COG4030 Uncharacterized protei 87.6 9.2 0.0002 31.7 9.9 40 175-215 82-121 (315)
196 PLN03063 alpha,alpha-trehalose 86.8 1.7 3.6E-05 43.0 6.3 37 176-212 532-569 (797)
197 TIGR01486 HAD-SF-IIB-MPGP mann 86.1 1.5 3.2E-05 36.9 5.0 15 79-93 1-15 (256)
198 KOG4549 Magnesium-dependent ph 85.7 2.5 5.4E-05 31.5 5.2 43 175-217 43-86 (144)
199 KOG2134 Polynucleotide kinase 85.3 3 6.5E-05 37.1 6.5 60 177-241 105-177 (422)
200 COG4087 Soluble P-type ATPase 84.5 3.3 7.1E-05 31.2 5.4 43 175-218 29-71 (152)
201 TIGR01116 ATPase-IIA1_Ca sarco 84.3 2 4.3E-05 43.2 5.7 42 176-217 537-578 (917)
202 TIGR01647 ATPase-IIIA_H plasma 84.2 2 4.3E-05 42.3 5.5 42 176-217 442-483 (755)
203 KOG0323 TFIIF-interacting CTD 83.4 3 6.4E-05 39.8 6.0 57 174-232 199-256 (635)
204 TIGR01517 ATPase-IIB_Ca plasma 83.2 2.6 5.6E-05 42.6 6.0 53 176-230 579-631 (941)
205 TIGR01484 HAD-SF-IIB HAD-super 83.0 2.6 5.7E-05 33.8 5.0 37 177-213 18-54 (204)
206 TIGR00685 T6PP trehalose-phosp 82.7 0.73 1.6E-05 38.5 1.6 15 78-92 4-18 (244)
207 TIGR01668 YqeG_hyp_ppase HAD s 81.4 1.5 3.3E-05 34.5 2.9 19 75-93 23-41 (170)
208 TIGR01456 CECR5 HAD-superfamil 80.4 1.8 4E-05 37.8 3.4 42 175-216 15-64 (321)
209 smart00540 LEM in nuclear memb 79.0 2.4 5.2E-05 25.4 2.5 32 182-213 9-40 (44)
210 COG4996 Predicted phosphatase 78.1 1.2 2.6E-05 33.5 1.2 15 79-93 2-16 (164)
211 TIGR01524 ATPase-IIIB_Mg magne 78.1 4.1 8.9E-05 40.8 5.4 51 176-230 515-565 (867)
212 COG3769 Predicted hydrolase (H 78.0 2.2 4.8E-05 35.1 2.8 16 75-90 5-20 (274)
213 PRK10517 magnesium-transportin 77.4 4.1 8.8E-05 41.0 5.1 52 176-231 550-601 (902)
214 TIGR01485 SPP_plant-cyano sucr 77.2 5.6 0.00012 33.2 5.3 38 179-216 24-61 (249)
215 KOG3107 Predicted haloacid deh 77.1 37 0.00079 30.4 10.1 51 195-254 373-423 (468)
216 COG0647 NagD Predicted sugar p 77.0 1.5 3.2E-05 37.4 1.7 27 231-262 187-213 (269)
217 TIGR01523 ATPase-IID_K-Na pota 76.8 5 0.00011 41.1 5.6 42 176-217 646-687 (1053)
218 PRK15122 magnesium-transportin 76.5 4.3 9.4E-05 40.8 5.0 52 176-231 550-601 (903)
219 COG5610 Predicted hydrolase (H 75.8 26 0.00056 32.2 9.1 77 177-260 100-178 (635)
220 TIGR01106 ATPase-IIC_X-K sodiu 75.8 5.1 0.00011 40.8 5.4 42 176-217 568-609 (997)
221 KOG0207 Cation transport ATPas 75.7 6.4 0.00014 38.9 5.7 40 175-214 722-761 (951)
222 COG0474 MgtA Cation transport 75.6 6.3 0.00014 39.7 5.9 65 175-240 546-610 (917)
223 PF06437 ISN1: IMP-specific 5' 75.5 3.9 8.4E-05 36.4 3.8 18 76-93 146-163 (408)
224 TIGR02245 HAD_IIID1 HAD-superf 75.0 8.1 0.00018 31.3 5.4 39 177-216 46-84 (195)
225 PRK13762 tRNA-modifying enzyme 74.1 6.2 0.00013 34.6 4.9 30 175-204 141-170 (322)
226 TIGR01261 hisB_Nterm histidino 73.5 2.1 4.5E-05 33.5 1.6 16 78-93 2-17 (161)
227 TIGR01657 P-ATPase-V P-type AT 73.4 9.4 0.0002 39.1 6.6 44 176-219 656-699 (1054)
228 TIGR02495 NrdG2 anaerobic ribo 73.1 8.4 0.00018 30.6 5.1 44 175-218 73-116 (191)
229 PF05761 5_nucleotid: 5' nucle 71.2 4.3 9.3E-05 37.3 3.3 38 74-111 9-51 (448)
230 COG5083 SMP2 Uncharacterized p 71.0 2.8 6.1E-05 37.9 2.0 18 76-93 374-391 (580)
231 KOG0202 Ca2+ transporting ATPa 69.8 11 0.00024 37.1 5.7 57 175-231 583-641 (972)
232 TIGR02245 HAD_IIID1 HAD-superf 69.5 3.6 7.8E-05 33.3 2.2 18 75-92 19-36 (195)
233 TIGR01494 ATPase_P-type ATPase 69.4 10 0.00022 35.4 5.4 40 176-215 347-386 (499)
234 COG3882 FkbH Predicted enzyme 68.6 13 0.00028 34.3 5.6 74 177-262 256-333 (574)
235 smart00577 CPDc catalytic doma 68.5 3.1 6.8E-05 31.8 1.6 16 78-93 3-18 (148)
236 COG3769 Predicted hydrolase (H 67.6 11 0.00023 31.2 4.5 38 180-217 27-64 (274)
237 KOG2116 Protein involved in pl 67.6 20 0.00043 34.3 6.7 50 179-228 561-615 (738)
238 TIGR01652 ATPase-Plipid phosph 67.6 8.9 0.00019 39.3 5.0 44 176-219 631-674 (1057)
239 PF05116 S6PP: Sucrose-6F-phos 66.8 4.8 0.0001 33.7 2.5 27 78-105 3-29 (247)
240 TIGR02251 HIF-SF_euk Dullard-l 62.2 5 0.00011 31.3 1.7 17 78-94 2-18 (162)
241 TIGR03365 Bsubt_queE 7-cyano-7 61.9 8.2 0.00018 32.2 3.0 29 175-203 83-111 (238)
242 COG2216 KdpB High-affinity K+ 61.4 16 0.00034 34.2 4.8 44 177-220 448-491 (681)
243 TIGR02471 sucr_syn_bact_C sucr 60.7 21 0.00045 29.4 5.2 33 183-216 22-54 (236)
244 PF03020 LEM: LEM domain; Int 59.9 1.3 2.9E-05 26.3 -1.5 31 183-213 10-40 (43)
245 PF02358 Trehalose_PPase: Treh 59.4 4.5 9.8E-05 33.5 1.0 13 81-93 1-13 (235)
246 KOG1618 Predicted phosphatase 58.2 14 0.00031 32.2 3.8 51 58-108 14-68 (389)
247 KOG3128 Uncharacterized conser 58.1 14 0.00031 31.1 3.6 46 174-219 136-181 (298)
248 TIGR03470 HpnH hopanoid biosyn 58.0 21 0.00045 31.2 5.0 29 174-202 82-110 (318)
249 TIGR02109 PQQ_syn_pqqE coenzym 57.5 24 0.00053 31.1 5.4 28 175-202 64-91 (358)
250 KOG3189 Phosphomannomutase [Li 56.9 10 0.00022 30.8 2.5 17 78-94 12-28 (252)
251 PRK05301 pyrroloquinoline quin 55.9 25 0.00054 31.4 5.3 29 174-202 72-100 (378)
252 COG3700 AphA Acid phosphatase 55.6 84 0.0018 25.2 7.3 47 181-229 119-169 (237)
253 PRK10076 pyruvate formate lyas 55.3 24 0.00052 28.9 4.6 28 175-202 49-77 (213)
254 cd05008 SIS_GlmS_GlmD_1 SIS (S 55.0 18 0.00039 26.4 3.6 29 178-206 59-87 (126)
255 COG1911 RPL30 Ribosomal protei 53.8 28 0.00061 24.6 4.0 60 175-237 18-83 (100)
256 TIGR02250 FCP1_euk FCP1-like p 53.8 8 0.00017 30.0 1.5 18 77-94 6-23 (156)
257 PLN03190 aminophospholipid tra 53.7 27 0.00059 36.3 5.6 43 176-218 726-768 (1178)
258 PF03332 PMM: Eukaryotic phosp 51.8 14 0.00031 30.4 2.7 23 181-204 1-23 (220)
259 cd05014 SIS_Kpsf KpsF-like pro 51.0 18 0.00039 26.4 3.0 30 177-206 59-88 (128)
260 TIGR02826 RNR_activ_nrdG3 anae 50.8 34 0.00073 26.3 4.5 26 178-203 74-99 (147)
261 cd05710 SIS_1 A subgroup of th 49.0 24 0.00051 25.8 3.4 28 177-204 59-86 (120)
262 KOG0206 P-type ATPase [General 46.8 34 0.00073 35.3 4.9 46 175-220 650-695 (1151)
263 KOG3040 Predicted sugar phosph 46.7 1.7E+02 0.0036 24.2 9.8 78 180-262 126-204 (262)
264 PF01380 SIS: SIS domain SIS d 46.7 32 0.0007 25.0 3.8 30 177-206 65-94 (131)
265 TIGR02493 PFLA pyruvate format 46.4 44 0.00096 27.4 5.0 37 175-211 76-117 (235)
266 PLN03064 alpha,alpha-trehalose 44.6 13 0.00027 37.5 1.6 16 78-93 592-607 (934)
267 TIGR03278 methan_mark_10 putat 44.4 39 0.00084 30.7 4.6 42 175-216 85-130 (404)
268 PLN02382 probable sucrose-phos 44.3 24 0.00052 32.1 3.3 29 79-107 11-41 (413)
269 PF02593 dTMP_synthase: Thymid 44.0 76 0.0017 26.1 5.8 63 175-240 58-126 (217)
270 PRK11145 pflA pyruvate formate 43.7 45 0.00097 27.6 4.7 29 175-203 81-110 (246)
271 TIGR00377 ant_ant_sig anti-ant 43.1 55 0.0012 22.9 4.5 36 183-220 66-101 (108)
272 TIGR03127 RuMP_HxlB 6-phospho 42.7 32 0.00069 27.0 3.4 32 177-208 84-115 (179)
273 TIGR02886 spore_II_AA anti-sig 40.7 62 0.0013 22.7 4.4 36 183-220 62-97 (106)
274 smart00266 CAD Domains present 40.4 19 0.00041 24.2 1.5 17 77-93 38-54 (74)
275 COG0241 HisB Histidinol phosph 40.4 18 0.00039 28.9 1.6 17 77-93 5-21 (181)
276 cd05013 SIS_RpiR RpiR-like pro 40.4 37 0.0008 24.7 3.3 26 179-204 74-99 (139)
277 TIGR02494 PFLE_PFLC glycyl-rad 40.0 48 0.001 28.4 4.4 28 175-202 136-164 (295)
278 PF01976 DUF116: Protein of un 39.2 52 0.0011 25.6 4.0 34 180-215 74-107 (158)
279 cd06539 CIDE_N_A CIDE_N domain 39.1 21 0.00045 24.3 1.5 17 77-93 40-56 (78)
280 PF00578 AhpC-TSA: AhpC/TSA fa 38.7 74 0.0016 22.7 4.7 36 179-214 46-81 (124)
281 KOG2018 Predicted dinucleotide 38.5 90 0.0019 27.4 5.5 46 181-228 179-245 (430)
282 PRK14129 heat shock protein Hs 38.4 28 0.00062 24.9 2.2 19 75-93 17-35 (105)
283 cd07043 STAS_anti-anti-sigma_f 38.3 70 0.0015 21.7 4.3 37 182-220 60-96 (99)
284 cd06537 CIDE_N_B CIDE_N domain 38.2 22 0.00047 24.3 1.5 17 77-93 39-55 (81)
285 cd04906 ACT_ThrD-I_1 First of 37.8 52 0.0011 22.4 3.5 24 179-202 53-76 (85)
286 cd05006 SIS_GmhA Phosphoheptos 37.1 39 0.00085 26.4 3.1 29 176-204 112-140 (177)
287 PF01740 STAS: STAS domain; I 36.7 65 0.0014 23.0 4.1 38 181-220 69-106 (117)
288 PHA02530 pseT polynucleotide k 36.6 25 0.00053 30.1 2.0 17 77-93 158-174 (300)
289 cd05017 SIS_PGI_PMI_1 The memb 36.3 48 0.001 24.0 3.3 26 177-202 55-80 (119)
290 cd02071 MM_CoA_mut_B12_BD meth 36.3 75 0.0016 23.2 4.4 42 178-220 64-108 (122)
291 cd01615 CIDE_N CIDE_N domain, 35.3 25 0.00055 23.9 1.5 16 78-93 41-56 (78)
292 COG1180 PflA Pyruvate-formate 35.0 60 0.0013 27.5 4.1 26 177-202 97-122 (260)
293 PF03808 Glyco_tran_WecB: Glyc 34.8 1.2E+02 0.0026 23.7 5.5 20 183-202 39-58 (172)
294 PRK13937 phosphoheptose isomer 34.7 51 0.0011 26.3 3.4 28 177-204 118-145 (188)
295 TIGR00441 gmhA phosphoheptose 34.6 45 0.00098 25.5 3.0 28 177-204 91-118 (154)
296 cd06533 Glyco_transf_WecG_TagA 34.6 1.1E+02 0.0024 23.9 5.3 29 183-212 37-65 (171)
297 KOG0204 Calcium transporting A 34.4 1E+02 0.0022 30.8 5.8 57 175-231 646-702 (1034)
298 COG3785 Uncharacterized conser 34.4 33 0.00072 24.6 2.0 23 74-97 25-47 (116)
299 cd04795 SIS SIS domain. SIS (S 34.1 51 0.0011 21.9 3.0 22 178-199 60-81 (87)
300 PF08444 Gly_acyl_tr_C: Aralky 33.6 81 0.0017 22.0 3.8 33 183-215 43-75 (89)
301 cd06536 CIDE_N_ICAD CIDE_N dom 33.4 27 0.00059 23.8 1.4 16 78-93 43-58 (80)
302 cd05005 SIS_PHI Hexulose-6-pho 33.3 51 0.0011 25.8 3.3 30 177-206 87-116 (179)
303 cd07041 STAS_RsbR_RsbS_like Su 31.9 1.2E+02 0.0025 21.4 4.7 37 182-220 63-100 (109)
304 cd06589 GH31 The enzymes of gl 31.7 56 0.0012 27.6 3.4 28 176-203 63-90 (265)
305 COG3882 FkbH Predicted enzyme 31.1 27 0.00058 32.3 1.4 15 76-90 221-235 (574)
306 PRK00414 gmhA phosphoheptose i 30.3 67 0.0014 25.7 3.5 28 177-204 123-150 (192)
307 PRK00192 mannosyl-3-phosphogly 30.0 55 0.0012 27.6 3.1 19 75-93 2-20 (273)
308 PF00072 Response_reg: Respons 29.8 90 0.0019 21.5 3.8 41 180-220 57-99 (112)
309 TIGR02668 moaA_archaeal probab 29.6 1E+02 0.0022 26.4 4.8 28 175-202 67-95 (302)
310 COG1366 SpoIIAA Anti-anti-sigm 29.6 1.2E+02 0.0026 21.8 4.5 36 183-220 67-102 (117)
311 COG1763 MobB Molybdopterin-gua 29.4 59 0.0013 25.4 2.9 22 181-202 19-40 (161)
312 TIGR00640 acid_CoA_mut_C methy 29.4 1.1E+02 0.0023 23.0 4.2 42 179-220 68-111 (132)
313 COG0378 HypB Ni2+-binding GTPa 29.0 2E+02 0.0044 23.4 5.9 19 182-201 31-49 (202)
314 PF08620 RPAP1_C: RPAP1-like, 28.7 22 0.00047 23.9 0.3 9 81-89 4-12 (73)
315 PF05116 S6PP: Sucrose-6F-phos 28.5 94 0.002 25.9 4.2 55 183-240 26-85 (247)
316 COG2044 Predicted peroxiredoxi 28.3 88 0.0019 23.2 3.4 28 175-202 58-85 (120)
317 cd06538 CIDE_N_FSP27 CIDE_N do 28.1 38 0.00083 23.0 1.4 16 78-93 40-55 (79)
318 COG0602 NrdG Organic radical a 27.9 75 0.0016 26.0 3.4 28 175-202 82-109 (212)
319 PRK13938 phosphoheptose isomer 27.3 79 0.0017 25.5 3.4 28 177-204 125-152 (196)
320 PF00875 DNA_photolyase: DNA p 26.8 56 0.0012 25.2 2.4 45 179-229 53-97 (165)
321 PF05240 APOBEC_C: APOBEC-like 26.8 79 0.0017 19.9 2.5 23 179-201 2-24 (55)
322 PRK01018 50S ribosomal protein 26.6 1.6E+02 0.0035 20.8 4.5 39 175-213 15-53 (99)
323 COG1546 CinA Uncharacterized p 26.4 1.4E+02 0.0031 23.3 4.5 49 181-229 10-59 (162)
324 TIGR01482 SPP-subfamily Sucros 26.3 56 0.0012 26.3 2.4 60 194-262 109-171 (225)
325 cd06595 GH31_xylosidase_XylS-l 26.2 80 0.0017 27.1 3.5 26 176-201 71-96 (292)
326 COG2810 Predicted type IV rest 26.1 77 0.0017 26.5 3.1 50 177-231 82-132 (284)
327 PF01113 DapB_N: Dihydrodipico 25.9 1.4E+02 0.0031 21.8 4.4 36 178-213 77-112 (124)
328 PF08859 DGC: DGC domain; Int 25.8 2.5E+02 0.0055 20.2 5.5 53 179-236 39-91 (110)
329 KOG1605 TFIIF-interacting CTD 25.7 41 0.00089 28.6 1.5 28 193-220 202-229 (262)
330 PRK13602 putative ribosomal pr 25.6 1.7E+02 0.0037 19.8 4.4 39 175-213 10-48 (82)
331 PF03465 eRF1_3: eRF1 domain 3 25.4 1.8E+02 0.004 21.0 4.7 34 181-215 71-104 (113)
332 PRK13936 phosphoheptose isomer 25.2 89 0.0019 25.1 3.4 31 178-208 124-154 (197)
333 PF14213 DUF4325: Domain of un 24.5 1E+02 0.0022 20.3 3.0 30 78-108 18-47 (74)
334 PF02358 Trehalose_PPase: Treh 24.5 85 0.0018 25.8 3.2 31 175-205 18-49 (235)
335 COG1117 PstB ABC-type phosphat 24.5 1E+02 0.0022 25.7 3.5 25 180-205 187-211 (253)
336 cd06592 GH31_glucosidase_KIAA1 24.4 89 0.0019 27.0 3.4 26 176-201 67-92 (303)
337 TIGR02803 ExbD_1 TonB system t 24.2 87 0.0019 22.9 2.9 25 176-200 96-121 (122)
338 PRK01158 phosphoglycolate phos 24.1 56 0.0012 26.5 2.1 60 194-262 117-179 (230)
339 PLN02423 phosphomannomutase 24.0 1.3E+02 0.0029 25.0 4.3 35 176-211 24-58 (245)
340 PF02017 CIDE-N: CIDE-N domain 24.0 55 0.0012 22.2 1.6 17 77-93 40-56 (78)
341 COG1225 Bcp Peroxiredoxin [Pos 23.8 3.5E+02 0.0077 21.0 7.0 33 184-216 56-88 (157)
342 PRK12358 putative 6-phosphoglu 23.6 3.2E+02 0.007 22.6 6.5 72 185-256 21-95 (239)
343 cd03018 PRX_AhpE_like Peroxire 23.5 2E+02 0.0043 21.3 4.9 32 183-214 53-84 (149)
344 PF06189 5-nucleotidase: 5'-nu 23.5 52 0.0011 27.9 1.7 22 192-213 186-207 (264)
345 PRK11508 sulfur transfer prote 23.5 3E+02 0.0064 20.0 7.1 34 78-112 7-40 (109)
346 PRK15468 carboxysome structura 23.2 29 0.00063 25.0 0.1 28 233-261 23-53 (111)
347 PRK13361 molybdenum cofactor b 23.2 2E+02 0.0043 25.1 5.5 29 174-202 71-101 (329)
348 PF12261 T_hemolysin: Thermost 23.2 1.8E+02 0.0039 23.2 4.6 35 183-219 107-141 (179)
349 COG1852 Uncharacterized conser 23.1 1.3E+02 0.0029 24.3 3.8 31 180-212 121-151 (209)
350 PF06901 FrpC: RTX iron-regula 22.9 46 0.001 26.8 1.2 14 78-91 59-72 (271)
351 PF04358 DsrC: DsrC like prote 22.8 3E+02 0.0066 19.9 6.9 34 78-112 7-40 (109)
352 PRK10886 DnaA initiator-associ 22.7 96 0.0021 25.0 3.1 29 178-206 122-150 (196)
353 PRK03692 putative UDP-N-acetyl 22.7 1.8E+02 0.0039 24.4 4.8 30 183-213 96-125 (243)
354 COG4850 Uncharacterized conser 22.7 1.9E+02 0.0041 25.5 4.9 30 175-204 195-225 (373)
355 COG1433 Uncharacterized conser 22.7 1.6E+02 0.0034 21.8 3.9 32 183-215 56-87 (121)
356 TIGR02666 moaA molybdenum cofa 22.6 2.2E+02 0.0047 24.8 5.6 28 175-202 70-99 (334)
357 PRK11557 putative DNA-binding 22.6 91 0.002 26.3 3.1 33 176-208 186-218 (278)
358 cd06591 GH31_xylosidase_XylS X 22.5 1E+02 0.0022 26.9 3.4 25 176-200 63-87 (319)
359 PF00696 AA_kinase: Amino acid 22.5 1.1E+02 0.0023 25.1 3.4 41 179-220 20-60 (242)
360 cd06593 GH31_xylosidase_YicI Y 22.4 1E+02 0.0022 26.6 3.4 25 176-200 63-87 (308)
361 cd06599 GH31_glycosidase_Aec37 22.3 1E+02 0.0022 26.8 3.4 26 176-201 70-95 (317)
362 PRK11382 frlB fructoselysine-6 22.2 1.1E+02 0.0023 27.0 3.5 28 178-205 105-132 (340)
363 cd03017 PRX_BCP Peroxiredoxin 22.2 2.3E+02 0.0049 20.6 5.0 27 187-213 52-78 (140)
364 COG4312 Uncharacterized protei 21.9 2.2E+02 0.0047 23.6 4.8 45 179-228 99-143 (247)
365 cd06598 GH31_transferase_CtsZ 21.8 1E+02 0.0022 26.8 3.3 27 175-201 66-92 (317)
366 PRK11337 DNA-binding transcrip 21.8 1.1E+02 0.0024 26.0 3.5 30 177-206 199-228 (292)
367 cd02971 PRX_family Peroxiredox 21.8 2.4E+02 0.0051 20.5 5.0 33 181-213 45-77 (140)
368 TIGR02097 yccV hemimethylated 21.7 71 0.0015 22.9 1.9 19 75-93 15-33 (101)
369 PRK15482 transcriptional regul 21.7 1.1E+02 0.0023 26.1 3.4 31 176-206 193-223 (285)
370 cd06594 GH31_glucosidase_YihQ 21.7 1.1E+02 0.0023 26.7 3.4 26 176-201 68-93 (317)
371 COG4275 Uncharacterized conser 21.4 49 0.0011 24.7 1.0 34 76-111 44-77 (143)
372 smart00481 POLIIIAc DNA polyme 21.3 1.5E+02 0.0032 18.8 3.3 23 180-202 16-38 (67)
373 PF13588 HSDR_N_2: Type I rest 21.3 1E+02 0.0022 22.0 2.7 24 179-202 68-91 (112)
374 smart00576 BTP Bromodomain tra 21.1 2.6E+02 0.0057 18.5 7.5 20 176-195 56-75 (77)
375 PRK02947 hypothetical protein; 21.0 1.1E+02 0.0024 25.6 3.2 26 177-202 118-143 (246)
376 PF13911 AhpC-TSA_2: AhpC/TSA 20.9 2.4E+02 0.0053 20.0 4.7 30 183-212 4-33 (115)
377 cd05007 SIS_Etherase N-acetylm 20.8 1.3E+02 0.0028 25.4 3.6 31 178-208 131-161 (257)
378 TIGR00696 wecB_tagA_cpsF bacte 20.7 2E+02 0.0044 22.7 4.5 29 183-212 39-67 (177)
379 cd06597 GH31_transferase_CtsY 20.6 1.2E+02 0.0025 26.8 3.4 25 177-201 83-107 (340)
380 TIGR02765 crypto_DASH cryptoch 20.4 1.1E+02 0.0025 27.7 3.4 20 181-201 84-104 (429)
381 cd01335 Radical_SAM Radical SA 20.2 2.6E+02 0.0055 21.2 5.1 37 177-213 57-97 (204)
382 PF12990 DUF3874: Domain of un 20.2 2.2E+02 0.0047 19.0 3.9 34 181-216 28-61 (73)
383 smart00115 CASc Caspase, inter 20.1 2.2E+02 0.0048 23.6 4.9 37 179-215 30-66 (241)
No 1
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.95 E-value=7.7e-27 Score=200.22 Aligned_cols=183 Identities=65% Similarity=1.068 Sum_probs=137.4
Q ss_pred CCCCcEEEEecCccccccC-cchHHHHHHHHHHHccC-CCCCCHHHHHHHHHhCCCHHHHHHHHHhcCCC----CCCCCc
Q 024806 74 SVLPSALLFDCDGVLVDTE-KDGHRISFNDTFKEKEL-GVTWDVDLYGELLKIGGGKERMTAYFNKTGWP----EKAPSD 147 (262)
Q Consensus 74 ~~~ik~viFD~DGTL~d~~-~~~~~~a~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 147 (262)
...+++|||||||||+|+. .. +..+|.++++++|+ ...++.+.+..+..+|.+...+...+...+|+ ...+..
T Consensus 37 ~~~~k~VIFDlDGTLvDS~~~~-~~~a~~~~l~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (286)
T PLN02779 37 SALPEALLFDCDGVLVETERDG-HRVAFNDAFKEFGLRPVEWDVELYDELLNIGGGKERMTWYFNENGWPTSTIEKAPKD 115 (286)
T ss_pred ccCCcEEEEeCceeEEccccHH-HHHHHHHHHHHcCCCCCCCCHHHHHHHHccCCChHHHHHHHHHcCCCccccccCCcc
Confidence 3457999999999999999 85 88899999999998 43445555544434666666666666555555 222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeC
Q 024806 148 EEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAG 227 (262)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s 227 (262)
++..++..+.+.+.+.+.|.+.+....+.++||+.++|+.|+++|++++|+||+....+..+++.+++..+|+.+.++++
T Consensus 116 ~e~~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v~~ 195 (286)
T PLN02779 116 EEERKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVFAG 195 (286)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEEec
Confidence 33334445555555556666665444468999999999999999999999999999999999998755555553235588
Q ss_pred CCCCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 228 DVVPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 228 ~~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
++++..||+|++| ..+++++|++|++|+||
T Consensus 196 ~~~~~~KP~p~~~-----~~a~~~~~~~p~~~l~I 225 (286)
T PLN02779 196 DDVPKKKPDPDIY-----NLAAETLGVDPSRCVVV 225 (286)
T ss_pred cccCCCCCCHHHH-----HHHHHHhCcChHHEEEE
Confidence 8889999999999 88999999999999986
No 2
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.94 E-value=2e-26 Score=190.59 Aligned_cols=164 Identities=28% Similarity=0.375 Sum_probs=123.1
Q ss_pred CCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHHHH-hcCCCCCCCCcHHHHHHH
Q 024806 76 LPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFN-KTGWPEKAPSDEEERKQF 154 (262)
Q Consensus 76 ~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 154 (262)
++++|||||||||+||++. +.++|.++++++|+..+ .+..... .|.........+. ..+... +.....
T Consensus 1 ~~~avIFD~DGvLvDse~~-~~~a~~~~~~~~g~~~~--~~~~~~~--~g~~~~~~~~~~~~~~~~~~--~~~~~~---- 69 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPL-HARAWLEALKEYGIEIS--DEEIREL--HGGGIARIIDLLRKLAAGED--PADLAE---- 69 (221)
T ss_pred CCcEEEEcCCCCcCcchHH-HHHHHHHHHHHcCCCCC--HHHHHHH--HCCChHHHHHHHHHHhcCCc--ccCHHH----
Confidence 4799999999999999996 99999999999988764 3444444 4444333333322 221110 001111
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCC
Q 024806 155 IASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKK 234 (262)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~K 234 (262)
.+.... +.+... .....++||+.++|+.|+++|++++++||+.+..++..|+.+|+.++|+ .+++++++...|
T Consensus 70 ~~~~~~---~~~~~~--~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~--~~v~~~dv~~~K 142 (221)
T COG0637 70 LERLLY---EAEALE--LEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFD--VIVTADDVARGK 142 (221)
T ss_pred HHHHHH---HHHHhh--hcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcc--hhccHHHHhcCC
Confidence 111111 111111 1247899999999999999999999999999999999999999999999 899999999999
Q ss_pred CChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 235 PDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 235 Pdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
|+|++| ..++++||++|++||+|
T Consensus 143 P~Pd~y-----L~Aa~~Lgv~P~~Cvvi 165 (221)
T COG0637 143 PAPDIY-----LLAAERLGVDPEECVVV 165 (221)
T ss_pred CCCHHH-----HHHHHHcCCChHHeEEE
Confidence 999999 88999999999999976
No 3
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.94 E-value=6.5e-26 Score=191.00 Aligned_cols=167 Identities=22% Similarity=0.280 Sum_probs=126.7
Q ss_pred CCCCcEEEEecCccccccCcchHHHHHHHHHHHccCC--CCCCHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCcHHHH
Q 024806 74 SVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELG--VTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEER 151 (262)
Q Consensus 74 ~~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (262)
..++|+|||||||||+|+... +..+|.++++++|+. .+.+.+.+.+. ..|.+...+...+... .....
T Consensus 19 ~~~~k~viFDlDGTLiDs~~~-~~~a~~~~~~~~g~~~g~~~~~~~~~~~-~~G~~~~~~~~~~~~~--------~~~~~ 88 (248)
T PLN02770 19 LAPLEAVLFDVDGTLCDSDPL-HYYAFREMLQEINFNGGVPITEEFFVEN-IAGKHNEDIALGLFPD--------DLERG 88 (248)
T ss_pred cCccCEEEEcCCCccCcCHHH-HHHHHHHHHHHhccccCCCCCHHHHHHH-cCCCCHHHHHHHHcCc--------chhhH
Confidence 456899999999999999996 889999999998764 23333433322 2455555444332111 01111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCC
Q 024806 152 KQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP 231 (262)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~ 231 (262)
. .+...+.+.|.+.... ...++||+.++|+.|+++|++++|+||+.+..++..++++|+.+||+ .|+++++++
T Consensus 89 ~----~~~~~~~~~y~~~~~~-~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd--~iv~~~~~~ 161 (248)
T PLN02770 89 L----KFTDDKEALFRKLASE-QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQ--AVIIGSECE 161 (248)
T ss_pred H----HHHHHHHHHHHHHHHh-cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCc--EEEecCcCC
Confidence 1 1222233344443332 47899999999999999999999999999999999999999999999 899999999
Q ss_pred CCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 232 RKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 232 ~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
..||+|++| ..+++++|++|++|+||
T Consensus 162 ~~KP~p~~~-----~~a~~~~~~~~~~~l~v 187 (248)
T PLN02770 162 HAKPHPDPY-----LKALEVLKVSKDHTFVF 187 (248)
T ss_pred CCCCChHHH-----HHHHHHhCCChhHEEEE
Confidence 999999999 88999999999999986
No 4
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.94 E-value=1.9e-25 Score=186.08 Aligned_cols=165 Identities=21% Similarity=0.306 Sum_probs=126.4
Q ss_pred CCCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCcHHHHHHH
Q 024806 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQF 154 (262)
Q Consensus 75 ~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (262)
.|+|+|||||||||+|+... +..+|+++++++|.+. .+.+.+... .|.+...+...... . ..+...++.
T Consensus 10 ~~~k~viFD~DGTL~Ds~~~-~~~a~~~~~~~~g~~~-~~~~~~~~~--~g~~~~~~~~~~~~----~---~~~~~~~~~ 78 (229)
T PRK13226 10 RFPRAVLFDLDGTLLDSAPD-MLATVNAMLAARGRAP-ITLAQLRPV--VSKGARAMLAVAFP----E---LDAAARDAL 78 (229)
T ss_pred ccCCEEEEcCcCccccCHHH-HHHHHHHHHHHCCCCC-CCHHHHHHH--hhhHHHHHHHHHhc----c---CChHHHHHH
Confidence 46799999999999999996 8899999999999864 344555544 44444444333211 0 122222333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCC
Q 024806 155 IASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKK 234 (262)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~K 234 (262)
.+.+. +.|.+.... ..+++||+.++|+.|+++|++++|+||+....+...++++++.++|+ .++++++++..|
T Consensus 79 ~~~~~----~~~~~~~~~-~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~--~i~~~~~~~~~K 151 (229)
T PRK13226 79 IPEFL----QRYEALIGT-QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCA--VLIGGDTLAERK 151 (229)
T ss_pred HHHHH----HHHHHhhhh-cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhccc--EEEecCcCCCCC
Confidence 33333 333333222 36899999999999999999999999999999999999999999999 888999889999
Q ss_pred CChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 235 PDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 235 Pdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
|+|++| ..+++++|++|++|+||
T Consensus 152 P~p~~~-----~~~~~~l~~~p~~~l~I 174 (229)
T PRK13226 152 PHPLPL-----LVAAERIGVAPTDCVYV 174 (229)
T ss_pred CCHHHH-----HHHHHHhCCChhhEEEe
Confidence 999999 88999999999999986
No 5
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.94 E-value=2.5e-25 Score=188.11 Aligned_cols=167 Identities=18% Similarity=0.221 Sum_probs=126.4
Q ss_pred CCCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCcHHHHHHH
Q 024806 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQF 154 (262)
Q Consensus 75 ~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (262)
..+|+|||||||||+|+....+..+|.++++++|+..+. .+.+... .|.+.......+.. +. ...+...++
T Consensus 22 ~~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~-~e~~~~~--~G~~~~~~~~~l~~--~~----~~~~~~~~l 92 (260)
T PLN03243 22 CGWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPP-AFLLKRA--EGMKNEQAISEVLC--WS----RDFLQMKRL 92 (260)
T ss_pred CCceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCH-HHHHHHh--cCCCHHHHHHHHhc--cC----CCHHHHHHH
Confidence 368999999999999997544778999999999987542 2333333 66666555544321 11 112222222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCC
Q 024806 155 IASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKK 234 (262)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~K 234 (262)
... +...+.. .......++||+.++|+.|+++|++++|+||+....++..++++|+.+||+ .|+++++++..|
T Consensus 93 ~~~----~~~~~~~-~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd--~ii~~~d~~~~K 165 (260)
T PLN03243 93 AIR----KEDLYEY-MQGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFS--VVLAAEDVYRGK 165 (260)
T ss_pred HHH----HHHHHHH-HHccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCc--EEEecccCCCCC
Confidence 222 2222221 122346789999999999999999999999999999999999999999999 899999999999
Q ss_pred CChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 235 PDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 235 Pdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
|+|++| ..+++++|++|++|+||
T Consensus 166 P~Pe~~-----~~a~~~l~~~p~~~l~I 188 (260)
T PLN03243 166 PDPEMF-----MYAAERLGFIPERCIVF 188 (260)
T ss_pred CCHHHH-----HHHHHHhCCChHHeEEE
Confidence 999999 88999999999999986
No 6
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.93 E-value=6.4e-25 Score=192.43 Aligned_cols=166 Identities=17% Similarity=0.210 Sum_probs=129.4
Q ss_pred CCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCcHHHHHHHH
Q 024806 76 LPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFI 155 (262)
Q Consensus 76 ~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (262)
.+++|||||||||+|+....+..+|.++++++|+... ..+.+... .|.+.......+.... ..+...+
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~-~~e~~~~~--~G~~~~~~l~~ll~~~------~~~~~~e--- 197 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPP-PAFILRRV--EGMKNEQAISEVLCWS------RDPAELR--- 197 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCC-HHHHHHHh--cCCCHHHHHHHHhhcc------CCHHHHH---
Confidence 7899999999999999875466799999999998754 23334443 6766666555432211 1122222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCC
Q 024806 156 ASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKP 235 (262)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KP 235 (262)
.+...+.+.|.+... ....++||+.++|+.|+++|++++|+||+.+..++.+++++|+.+||+ .|+++++++..||
T Consensus 198 -~l~~~~~~~y~~~~~-~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd--~Iv~sddv~~~KP 273 (381)
T PLN02575 198 -RMATRKEEIYQALQG-GIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFS--VIVAAEDVYRGKP 273 (381)
T ss_pred -HHHHHHHHHHHHHhc-cCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHce--EEEecCcCCCCCC
Confidence 333333444544433 236899999999999999999999999999999999999999999999 8999999999999
Q ss_pred ChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 236 DPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 236 dp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
+|++| ..+++++|+.|++|+||
T Consensus 274 ~Peif-----l~A~~~lgl~Peecl~I 295 (381)
T PLN02575 274 DPEMF-----IYAAQLLNFIPERCIVF 295 (381)
T ss_pred CHHHH-----HHHHHHcCCCcccEEEE
Confidence 99999 88999999999999986
No 7
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.93 E-value=1.2e-24 Score=179.40 Aligned_cols=161 Identities=20% Similarity=0.212 Sum_probs=123.7
Q ss_pred CCCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCcHHHHHHH
Q 024806 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQF 154 (262)
Q Consensus 75 ~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (262)
|++++||||+||||+|+... +..+|.+++++++... .+.+.+... .|.+.......+ .+...+++
T Consensus 1 m~~~~viFD~DGTL~ds~~~-~~~a~~~~~~~~~~~~-~~~~~~~~~--~G~~~~~~~~~~-----------~~~~~~~~ 65 (214)
T PRK13288 1 MKINTVLFDLDGTLINTNEL-IISSFLHTLKTYYPNQ-YKREDVLPF--IGPSLHDTFSKI-----------DESKVEEM 65 (214)
T ss_pred CCccEEEEeCCCcCccCHHH-HHHHHHHHHHHhCCCC-CCHHHHHHH--hCcCHHHHHHhc-----------CHHHHHHH
Confidence 46899999999999999996 8899999999987653 234445444 455544333321 11122222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCC
Q 024806 155 IASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKK 234 (262)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~K 234 (262)
... +.+.+..... ....++||+.++|+.|+++|++++|+||+....+...++.+|+.++|+ .++++++++..|
T Consensus 66 ~~~----~~~~~~~~~~-~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~--~i~~~~~~~~~K 138 (214)
T PRK13288 66 ITT----YREFNHEHHD-ELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFD--VVITLDDVEHAK 138 (214)
T ss_pred HHH----HHHHHHHhhh-hhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhcee--EEEecCcCCCCC
Confidence 222 2222222222 236799999999999999999999999999999999999999999999 899999999999
Q ss_pred CChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 235 PDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 235 Pdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
|+|++| ..+++++|++|++++||
T Consensus 139 p~p~~~-----~~~~~~~~~~~~~~~~i 161 (214)
T PRK13288 139 PDPEPV-----LKALELLGAKPEEALMV 161 (214)
T ss_pred CCcHHH-----HHHHHHcCCCHHHEEEE
Confidence 999999 88899999999999986
No 8
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.93 E-value=2.7e-24 Score=177.96 Aligned_cols=168 Identities=26% Similarity=0.391 Sum_probs=131.4
Q ss_pred CCCCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCcHHHHHH
Q 024806 74 SVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQ 153 (262)
Q Consensus 74 ~~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (262)
++++++||||+||||+|+... +..+++.+++++|++. .+.+.+... +|.+...+....... . ..+...+
T Consensus 1 ~~~~~~iiFDlDGTL~Ds~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~--ig~~~~~~~~~~~~~--~-----~~~~~~~ 69 (220)
T COG0546 1 MMMIKAILFDLDGTLVDSAED-ILRAFNAALAELGLPP-LDEEEIRQL--IGLGLDELIERLLGE--A-----DEEAAAE 69 (220)
T ss_pred CCCCCEEEEeCCCccccChHH-HHHHHHHHHHHcCCCC-CCHHHHHHH--hcCCHHHHHHHHhcc--c-----cchhHHH
Confidence 367999999999999999996 8889999999999884 345666665 677666655543211 0 1111113
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCC
Q 024806 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK 233 (262)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~ 233 (262)
..+.+...+.+.+.+.. ...++||+.++|+.|+++|++++|+||.+...++.+++++|+.+||+ .++++++....
T Consensus 70 ~~~~~~~~~~~~~~~~~---~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~--~i~g~~~~~~~ 144 (220)
T COG0546 70 LVERLREEFLTAYAELL---ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFD--VIVGGDDVPPP 144 (220)
T ss_pred HHHHHHHHHHHHHHhhc---cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccc--eEEcCCCCCCC
Confidence 34444444444443322 15799999999999999999999999999999999999999999999 88888888999
Q ss_pred CCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 234 KPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 234 KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
||+|..+ ..+|+.+|++|++++||
T Consensus 145 KP~P~~l-----~~~~~~~~~~~~~~l~V 168 (220)
T COG0546 145 KPDPEPL-----LLLLEKLGLDPEEALMV 168 (220)
T ss_pred CcCHHHH-----HHHHHHhCCChhheEEE
Confidence 9999999 78899999998899987
No 9
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.93 E-value=2.3e-24 Score=178.38 Aligned_cols=165 Identities=16% Similarity=0.157 Sum_probs=126.7
Q ss_pred CcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHH-HHhcCCCCCCCCcHHHHHHHH
Q 024806 77 PSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAY-FNKTGWPEKAPSDEEERKQFI 155 (262)
Q Consensus 77 ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 155 (262)
+|+||||+||||+|+... +..+|.++++++|...+ .+.+.+. ..|.....+.+. +...+. .....+++.
T Consensus 1 ~k~iiFD~DGTL~ds~~~-~~~~~~~~~~~~g~~~~--~~~~~~~-~~g~~~~~~~~~~~~~~~~------~~~~~~~~~ 70 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGL-VYRALRQAVTAAGLSPT--PEEVQSA-WMGQSKIEAIRALLALDGA------DEAEAQAAF 70 (220)
T ss_pred CcEEEEecCCCeeccCch-HHHHHHHHHHHcCCCCC--HHHHHHh-hcCCCHHHHHHHHHhccCC------CHHHHHHHH
Confidence 589999999999999996 88999999999888643 3444331 256655555443 333332 122222233
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCC--CCcccceEEeCCCCCCC
Q 024806 156 ASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP--ERAEKIQIFAGDVVPRK 233 (262)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~--~~f~~~~Iv~s~~~~~~ 233 (262)
..+ .+.+.+.+......++||+.++|+.|+++|++++|+||+....++..|+.+|+. ++|+ .++++++++..
T Consensus 71 ~~~----~~~~~~~~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~--~i~~~~~~~~~ 144 (220)
T TIGR03351 71 ADF----EERLAEAYDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVD--AVVCPSDVAAG 144 (220)
T ss_pred HHH----HHHHHHHhcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCC--EEEcCCcCCCC
Confidence 333 333433333334689999999999999999999999999999999999999998 9999 89999999999
Q ss_pred CCChHHHhhhhhhhhhhhcccC-CcccccC
Q 024806 234 KPDPVKICSLTVDIVCNVLKTH-AHKNVLV 262 (262)
Q Consensus 234 KPdp~~~~~~~~~~a~~~lgv~-p~e~v~I 262 (262)
||+|++| ..+++++|+. |++|+||
T Consensus 145 KP~p~~~-----~~a~~~~~~~~~~~~~~i 169 (220)
T TIGR03351 145 RPAPDLI-----LRAMELTGVQDVQSVAVA 169 (220)
T ss_pred CCCHHHH-----HHHHHHcCCCChhHeEEe
Confidence 9999999 8889999997 7999986
No 10
>PRK11587 putative phosphatase; Provisional
Probab=99.92 E-value=1.5e-24 Score=179.32 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=118.2
Q ss_pred CCCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCcHHHHHHH
Q 024806 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQF 154 (262)
Q Consensus 75 ~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (262)
|++|+||||+||||+|+... +..+|+++++++|++. ..+... ..|.+.....+.+.. ++ ..+. .
T Consensus 1 M~~k~viFDlDGTL~Ds~~~-~~~a~~~~~~~~g~~~----~~~~~~-~~g~~~~~~~~~~~~-~~------~~~~---~ 64 (218)
T PRK11587 1 MRCKGFLFDLDGTLVDSLPA-VERAWSNWADRHGIAP----DEVLNF-IHGKQAITSLRHFMA-GA------SEAE---I 64 (218)
T ss_pred CCCCEEEEcCCCCcCcCHHH-HHHHHHHHHHHcCCCH----HHHHHH-HcCCCHHHHHHHHhc-cC------CcHH---H
Confidence 46899999999999999996 8889999999999853 222222 245555554443321 11 1111 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCC
Q 024806 155 IASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKK 234 (262)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~K 234 (262)
.+.+... ..+.... .....++||+.++|+.|+++|++++|+||+....+...++..++ .+|+ .++++++++..|
T Consensus 65 ~~~~~~~--~~~~~~~-~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~~~~--~i~~~~~~~~~K 138 (218)
T PRK11587 65 QAEFTRL--EQIEATD-TEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-PAPE--VFVTAERVKRGK 138 (218)
T ss_pred HHHHHHH--HHHHHhh-hcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-CCcc--EEEEHHHhcCCC
Confidence 1222110 0111111 12468999999999999999999999999998888888888877 5677 788888888999
Q ss_pred CChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 235 PDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 235 Pdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
|+|++| ..+++++|+.|++|+||
T Consensus 139 P~p~~~-----~~~~~~~g~~p~~~l~i 161 (218)
T PRK11587 139 PEPDAY-----LLGAQLLGLAPQECVVV 161 (218)
T ss_pred CCcHHH-----HHHHHHcCCCcccEEEE
Confidence 999999 88999999999999986
No 11
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.92 E-value=7.3e-24 Score=180.45 Aligned_cols=169 Identities=18% Similarity=0.220 Sum_probs=121.5
Q ss_pred CCCCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHH----------H-HhcCCCC
Q 024806 74 SVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAY----------F-NKTGWPE 142 (262)
Q Consensus 74 ~~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~ 142 (262)
|+++|+||||+||||+|+....+..+|.++++++|++.+ .+.+... .|.+....... + ...+.+
T Consensus 1 ~~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~~--~~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~g~~- 75 (267)
T PRK13478 1 MMKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEIT--LEEARGP--MGLGKWDHIRALLKMPRVAARWQAVFGRL- 75 (267)
T ss_pred CCceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCCC--HHHHHHh--cCCCHHHHHHHHHhcHHHHHHHHHHhCCC-
Confidence 567999999999999999653246799999999987643 3444433 44443221111 1 111211
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCc-cc
Q 024806 143 KAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA-EK 221 (262)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f-~~ 221 (262)
.......++...+. +.+.+... ....++||+.++|+.|+++|++++|+||+.+..+..+++.+++.++| +
T Consensus 76 ---~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d- 146 (267)
T PRK13478 76 ---PTEADVDALYAAFE----PLQIAKLA-DYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPD- 146 (267)
T ss_pred ---CCHHHHHHHHHHHH----HHHHHHHh-hcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCce-
Confidence 12222233333322 23333222 23689999999999999999999999999999999999999888885 6
Q ss_pred ceEEeCCCCCCCCCChHHHhhhhhhhhhhhcccC-CcccccC
Q 024806 222 IQIFAGDVVPRKKPDPVKICSLTVDIVCNVLKTH-AHKNVLV 262 (262)
Q Consensus 222 ~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lgv~-p~e~v~I 262 (262)
.|+++++++..||+|++| ..+++++|+. |++|+||
T Consensus 147 -~i~~~~~~~~~KP~p~~~-----~~a~~~l~~~~~~e~l~I 182 (267)
T PRK13478 147 -HVVTTDDVPAGRPYPWMA-----LKNAIELGVYDVAACVKV 182 (267)
T ss_pred -EEEcCCcCCCCCCChHHH-----HHHHHHcCCCCCcceEEE
Confidence 789999999999999999 8899999996 6899986
No 12
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.92 E-value=6.3e-24 Score=179.48 Aligned_cols=166 Identities=18% Similarity=0.162 Sum_probs=120.6
Q ss_pred CcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHH-----------HHhcCCCCCCC
Q 024806 77 PSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAY-----------FNKTGWPEKAP 145 (262)
Q Consensus 77 ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 145 (262)
+|+||||+||||+|+....+..+|.++++++|... +.+.+... .|.+....... ....+.+
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~--~~~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 73 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQI--TLEEARGP--MGLGKWDHIRALLKMPAVAERWRAKFGRL---- 73 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCc--cHHHHHHh--cCccHHHHHHHHhcCHHHHHHHHHHhCCC----
Confidence 68999999999999965325679999999988754 34444433 44443222211 1112211
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCc-ccceE
Q 024806 146 SDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA-EKIQI 224 (262)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f-~~~~I 224 (262)
..++...++... +.+.+.+.... ...++||+.++|+.|+++|++++|+||++...++.+++.+|+.++| + .|
T Consensus 74 ~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d--~i 146 (253)
T TIGR01422 74 PTEADIEAIYEA----FEPLQLAKLAE-YSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPD--YN 146 (253)
T ss_pred CCHHHHHHHHHH----HHHHHHHHHHh-cCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCc--eE
Confidence 122222222222 22333332222 3789999999999999999999999999999999999999999996 7 89
Q ss_pred EeCCCCCCCCCChHHHhhhhhhhhhhhcccC-CcccccC
Q 024806 225 FAGDVVPRKKPDPVKICSLTVDIVCNVLKTH-AHKNVLV 262 (262)
Q Consensus 225 v~s~~~~~~KPdp~~~~~~~~~~a~~~lgv~-p~e~v~I 262 (262)
+++++++..||+|++| ..+++++|+. |++|+||
T Consensus 147 i~~~~~~~~KP~p~~~-----~~a~~~l~~~~~~~~l~I 180 (253)
T TIGR01422 147 VTTDDVPAGRPAPWMA-----LKNAIELGVYDVAACVKV 180 (253)
T ss_pred EccccCCCCCCCHHHH-----HHHHHHcCCCCchheEEE
Confidence 9999999999999999 8899999995 9999986
No 13
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.92 E-value=4.7e-24 Score=176.84 Aligned_cols=166 Identities=19% Similarity=0.307 Sum_probs=125.2
Q ss_pred CCCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHHHH-hcCCCCCCCCcHHHHHH
Q 024806 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFN-KTGWPEKAPSDEEERKQ 153 (262)
Q Consensus 75 ~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (262)
.++++||||+||||+|+.+. +..++.++++++|+.... .+.+... .|.........+. ..+|.. + . ..+
T Consensus 5 ~~~k~iiFD~DGTL~d~~~~-~~~a~~~~~~~~g~~~~~-~~~~~~~--~g~~~~~~~~~~~~~~~~~~--~-~---~~~ 74 (222)
T PRK10826 5 RQILAAIFDMDGLLIDSEPL-WDRAELDVMASLGVDISR-REELPDT--LGLRIDQVVDLWYARQPWNG--P-S---RQE 74 (222)
T ss_pred ccCcEEEEcCCCCCCcCHHH-HHHHHHHHHHHCCCCCCH-HHHHHHh--hCCCHHHHHHHHHHhcCCCC--C-C---HHH
Confidence 46899999999999999996 888999999999876432 2333333 4555444444332 222211 1 1 112
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCC
Q 024806 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK 233 (262)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~ 233 (262)
....+.+ .+.+... ....++||+.++|+.|+++|++++|+||+....++.+++.+++.++|+ .++++++++..
T Consensus 75 ~~~~~~~----~~~~~~~-~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~--~~~~~~~~~~~ 147 (222)
T PRK10826 75 VVQRIIA----RVISLIE-ETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFD--ALASAEKLPYS 147 (222)
T ss_pred HHHHHHH----HHHHHHh-cCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhccc--EEEEcccCCCC
Confidence 2222222 2222222 236899999999999999999999999999999999999999999999 89999999999
Q ss_pred CCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 234 KPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 234 KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
||+|++| ..+++++|+.|++|++|
T Consensus 148 Kp~~~~~-----~~~~~~~~~~~~~~~~i 171 (222)
T PRK10826 148 KPHPEVY-----LNCAAKLGVDPLTCVAL 171 (222)
T ss_pred CCCHHHH-----HHHHHHcCCCHHHeEEE
Confidence 9999999 88999999999999986
No 14
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.92 E-value=4.4e-24 Score=175.67 Aligned_cols=163 Identities=21% Similarity=0.302 Sum_probs=123.7
Q ss_pred EEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHH-HHhcCCCCCCCCcHHHHHHHHHHH
Q 024806 80 LLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAY-FNKTGWPEKAPSDEEERKQFIASL 158 (262)
Q Consensus 80 viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 158 (262)
||||+||||+|+... +..+++++++++|... .+.+.+... .|.+...+... +...+.+ ..... .+.+
T Consensus 1 viFD~DGTL~Ds~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~--~g~~~~~~~~~~~~~~~~~----~~~~~----~~~~ 68 (213)
T TIGR01449 1 VLFDLDGTLVDSAPD-IAAAVNMALAALGLPP-ATLARVIGF--IGNGVPVLMERVLAWAGQE----PDAQR----VAEL 68 (213)
T ss_pred CeecCCCccccCHHH-HHHHHHHHHHHCCCCC-CCHHHHHHH--hcccHHHHHHHHhhccccc----cChHH----HHHH
Confidence 699999999999986 7789999999998863 344555544 45554444333 3222211 12222 2233
Q ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChH
Q 024806 159 HKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPV 238 (262)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~ 238 (262)
.+.+.+.|.+...+ ...++||+.++|+.|+++|++++|+||+....++.+++++|+.++|+ .++++++++..||+|+
T Consensus 69 ~~~~~~~~~~~~~~-~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~--~~~~~~~~~~~Kp~p~ 145 (213)
T TIGR01449 69 RKLFDRHYEEVAGE-LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFS--VLIGGDSLAQRKPHPD 145 (213)
T ss_pred HHHHHHHHHHhccc-cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCc--EEEecCCCCCCCCChH
Confidence 33333444443322 36899999999999999999999999999999999999999999999 8999999999999999
Q ss_pred HHhhhhhhhhhhhcccCCcccccC
Q 024806 239 KICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 239 ~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
+| ..+++++|++|++|+||
T Consensus 146 ~~-----~~~~~~~~~~~~~~~~i 164 (213)
T TIGR01449 146 PL-----LLAAERLGVAPQQMVYV 164 (213)
T ss_pred HH-----HHHHHHcCCChhHeEEe
Confidence 99 88999999999999986
No 15
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.91 E-value=6.3e-24 Score=170.91 Aligned_cols=164 Identities=24% Similarity=0.305 Sum_probs=123.0
Q ss_pred CcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHH-HHhcCCCCCCCCcHHHHHHHH
Q 024806 77 PSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAY-FNKTGWPEKAPSDEEERKQFI 155 (262)
Q Consensus 77 ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 155 (262)
+|+|+||+||||+|+... +..+|.++++++|... +.+..... .|......... +...+. ........
T Consensus 1 ~~~iiFD~DGTL~ds~~~-~~~~~~~~~~~~g~~~--~~~~~~~~--~g~~~~~~~~~~~~~~~~----~~~~~~~~--- 68 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPL-HAQAWKHLADKYGIEF--DKQYNTSL--GGLSREDILRAILKLRKP----GLSLETIH--- 68 (185)
T ss_pred CCeEEEcCCCcccCChHH-HHHHHHHHHHHcCCCC--CHHHHHHc--CCCCHHHHHHHHHHhcCC----CCCHHHHH---
Confidence 589999999999999996 8889999999998764 32322222 44554444333 333211 11222222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCC
Q 024806 156 ASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKP 235 (262)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KP 235 (262)
.+...+.+.|.+.+......++||+.++|+.|+++|++++|+||+ ..++.+++.+|+.++|+ .++++++++..||
T Consensus 69 -~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~--~v~~~~~~~~~kp 143 (185)
T TIGR02009 69 -QLAERKNELYRELLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFD--AIVDADEVKEGKP 143 (185)
T ss_pred -HHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCC--EeeehhhCCCCCC
Confidence 233333344544443334789999999999999999999999998 67899999999999999 8999999999999
Q ss_pred ChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 236 DPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 236 dp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
+|++| ..+++++|++|+++++|
T Consensus 144 ~~~~~-----~~~~~~~~~~~~~~v~I 165 (185)
T TIGR02009 144 HPETF-----LLAAELLGVSPNECVVF 165 (185)
T ss_pred ChHHH-----HHHHHHcCCCHHHeEEE
Confidence 99999 88999999999999986
No 16
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.91 E-value=1.5e-23 Score=168.77 Aligned_cols=162 Identities=21% Similarity=0.336 Sum_probs=120.7
Q ss_pred EEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHH-HHHhcCCCCCCCCcHHHHHHHHHH
Q 024806 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTA-YFNKTGWPEKAPSDEEERKQFIAS 157 (262)
Q Consensus 79 ~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 157 (262)
+||||+||||+|+... +..+|.++++++|++. +.+....+ .+.+...... .+.+.+.+ ..+....++.+.
T Consensus 1 ~iiFD~DGTL~ds~~~-~~~~~~~~~~~~g~~~--~~~~~~~~--~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 71 (185)
T TIGR01990 1 AVIFDLDGVITDTAEY-HYLAWKALADELGIPF--DEEFNESL--KGVSREDSLERILDLGGKK----YSEEEKEELAER 71 (185)
T ss_pred CeEEcCCCccccChHH-HHHHHHHHHHHcCCCC--CHHHHHHh--cCCChHHHHHHHHHhcCCC----CCHHHHHHHHHH
Confidence 5899999999999996 8889999999998864 33444333 4544444443 44444432 223333333333
Q ss_pred HHHHHHHHHHHHHHh-cCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCC
Q 024806 158 LHKRKTELFMVLIEK-KLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPD 236 (262)
Q Consensus 158 ~~~~~~~~~~~~~~~-~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPd 236 (262)
+. +.|.+.+.. ....++||+.++|+.|+++|++++|+||+. .....++++++.++|+ .++++++++..||+
T Consensus 72 ~~----~~~~~~~~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~~f~--~~~~~~~~~~~kp~ 143 (185)
T TIGR01990 72 KN----DYYVELLKELTPADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLIDYFD--AIVDPAEIKKGKPD 143 (185)
T ss_pred HH----HHHHHHHHhcCCcccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHhhCc--EEEehhhcCCCCCC
Confidence 33 333333221 124789999999999999999999999975 3567899999999999 89999999999999
Q ss_pred hHHHhhhhhhhhhhhcccCCcccccC
Q 024806 237 PVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 237 p~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
|++| ..+++++|++|++||||
T Consensus 144 p~~~-----~~~~~~~~~~~~~~v~v 164 (185)
T TIGR01990 144 PEIF-----LAAAEGLGVSPSECIGI 164 (185)
T ss_pred hHHH-----HHHHHHcCCCHHHeEEE
Confidence 9999 88999999999999986
No 17
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.91 E-value=9e-24 Score=170.54 Aligned_cols=163 Identities=20% Similarity=0.223 Sum_probs=121.0
Q ss_pred CCCCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHH-HHHhcCCCCCCCCcHHHHH
Q 024806 74 SVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTA-YFNKTGWPEKAPSDEEERK 152 (262)
Q Consensus 74 ~~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 152 (262)
|..+++||||+||||+|+... +..+|.++++++|... +.+..... .|.....+.. .+...+.+ ...+
T Consensus 2 ~~~~~~viFD~DGTLiDs~~~-~~~a~~~~~~~~g~~~--~~~~~~~~--~g~~~~~~~~~~~~~~~~~----~~~~--- 69 (188)
T PRK10725 2 YDRYAGLIFDMDGTILDTEPT-HRKAWREVLGRYGLQF--DEQAMVAL--NGSPTWRIAQAIIELNQAD----LDPH--- 69 (188)
T ss_pred CCcceEEEEcCCCcCccCHHH-HHHHHHHHHHHcCCCC--CHHHHHHh--cCCCHHHHHHHHHHHhCCC----CCHH---
Confidence 346899999999999999996 8899999999998864 33444433 5555544433 33323211 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCC
Q 024806 153 QFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPR 232 (262)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~ 232 (262)
++.. ...+.+..... ....++|| .++|+.|++. ++++|+||++...++..++++|+.+||+ .|+++++++.
T Consensus 70 ~~~~----~~~~~~~~~~~-~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd--~i~~~~~~~~ 140 (188)
T PRK10725 70 ALAR----EKTEAVKSMLL-DSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFD--AVVAADDVQH 140 (188)
T ss_pred HHHH----HHHHHHHHHHh-ccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHce--EEEehhhccC
Confidence 1111 12222322222 23567886 5999999876 9999999999999999999999999999 8999999999
Q ss_pred CCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 233 KKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 233 ~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
.||+|++| ..+++++|++|++|+||
T Consensus 141 ~KP~p~~~-----~~~~~~~~~~~~~~l~i 165 (188)
T PRK10725 141 HKPAPDTF-----LRCAQLMGVQPTQCVVF 165 (188)
T ss_pred CCCChHHH-----HHHHHHcCCCHHHeEEE
Confidence 99999999 88999999999999986
No 18
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.90 E-value=2.4e-23 Score=172.43 Aligned_cols=164 Identities=19% Similarity=0.223 Sum_probs=120.7
Q ss_pred CCCCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHH-HHhcCCCCCCCCcHHHHH
Q 024806 74 SVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAY-FNKTGWPEKAPSDEEERK 152 (262)
Q Consensus 74 ~~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 152 (262)
|+.+++|+||+||||+|+... +..+|.+++.++|+..+ .+++... ..+.+...+... +.+.+.+. ..+
T Consensus 1 ~~~~~~viFD~DGTL~d~~~~-~~~a~~~~~~~~g~~~~--~~~~~~~-~~g~~~~~~~~~~~~~~~~~~----~~~--- 69 (221)
T PRK10563 1 MSQIEAVFFDCDGTLVDSEVI-CSRAYVTMFAEFGITLS--LEEVFKR-FKGVKLYEIIDIISKEHGVTL----AKA--- 69 (221)
T ss_pred CCCCCEEEECCCCCCCCChHH-HHHHHHHHHHHcCCCCC--HHHHHHH-hcCCCHHHHHHHHHHHhCCCC----CHH---
Confidence 346899999999999999986 78899999999987643 3333222 245544444443 33444321 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCC
Q 024806 153 QFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPR 232 (262)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~ 232 (262)
++...+.+.+...+ .....++||+.++|+.| +++++|+||++...+...|+++++.++|+. .++++++++.
T Consensus 70 ~~~~~~~~~~~~~~-----~~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~-~v~~~~~~~~ 140 (221)
T PRK10563 70 ELEPVYRAEVARLF-----DSELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGMLHYFPD-KLFSGYDIQR 140 (221)
T ss_pred HHHHHHHHHHHHHH-----HccCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChHHhCcc-eEeeHHhcCC
Confidence 22222222222211 12478999999999999 499999999999999999999999999963 5778888899
Q ss_pred CCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 233 KKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 233 ~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
.||+|++| ..+++++|++|++|+||
T Consensus 141 ~KP~p~~~-----~~a~~~~~~~p~~~l~i 165 (221)
T PRK10563 141 WKPDPALM-----FHAAEAMNVNVENCILV 165 (221)
T ss_pred CCCChHHH-----HHHHHHcCCCHHHeEEE
Confidence 99999999 88999999999999986
No 19
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.90 E-value=7e-23 Score=167.41 Aligned_cols=164 Identities=18% Similarity=0.245 Sum_probs=114.3
Q ss_pred cEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCH--HHHHHHHH------------hCCCHHHH-----HHHHHhc
Q 024806 78 SALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDV--DLYGELLK------------IGGGKERM-----TAYFNKT 138 (262)
Q Consensus 78 k~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~--~~~~~~~~------------~~~~~~~~-----~~~~~~~ 138 (262)
|+|+||+||||+|+... +..++.++++++|+....+. +.+.+.+. .|.....+ ...+...
T Consensus 1 k~viFDlDGTL~d~~~~-~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 79 (203)
T TIGR02252 1 KLITFDAVGTLLALKEP-VGEVYCEIARKYGVEVSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFGRA 79 (203)
T ss_pred CeEEEecCCceeeeCCC-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHhc
Confidence 58999999999999986 88899999999998754211 01111110 02222111 1222222
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCC
Q 024806 139 GWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPER 218 (262)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~ 218 (262)
+.+ ......+. ..+.+..........++||+.++|+.|+++|++++|+||+... +...++.+|+..+
T Consensus 80 ~~~-----~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~ 146 (203)
T TIGR02252 80 GVP-----DPESFEKI-------FEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLEY 146 (203)
T ss_pred CCC-----CchhHHHH-------HHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHh
Confidence 211 11111111 1122221111123578999999999999999999999999864 5788999999999
Q ss_pred cccceEEeCCCCCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 219 AEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 219 f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
|+ .|+++++++..||+|++| ..+++.+|++|++++||
T Consensus 147 fd--~i~~s~~~~~~KP~~~~~-----~~~~~~~~~~~~~~~~I 183 (203)
T TIGR02252 147 FD--FVVTSYEVGAEKPDPKIF-----QEALERAGISPEEALHI 183 (203)
T ss_pred cc--eEEeecccCCCCCCHHHH-----HHHHHHcCCChhHEEEE
Confidence 99 899999999999999999 88999999999999987
No 20
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.90 E-value=8.8e-23 Score=168.87 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=111.3
Q ss_pred CCcEEEEecCccccccCcchHHHHHHHHH---HHccCCCCCCHHHHHHHHH-----hCCCHH-HHHHHHHhcCCCCCCCC
Q 024806 76 LPSALLFDCDGVLVDTEKDGHRISFNDTF---KEKELGVTWDVDLYGELLK-----IGGGKE-RMTAYFNKTGWPEKAPS 146 (262)
Q Consensus 76 ~ik~viFD~DGTL~d~~~~~~~~a~~~~~---~~~g~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~ 146 (262)
|+++|+||+||||+|+... +..++..+. .++|++.+ .+.+...+. .+.... .....+...+.. .
T Consensus 1 ~~~~viFDlDGTL~ds~~~-~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 73 (221)
T TIGR02253 1 MIKAIFFDLDDTLIDTSGL-AEKARRNAIEVLIEAGLNVD--FEEAYEELLKLIKEYGSNYPTHFDYLIRRLWEE----Y 73 (221)
T ss_pred CceEEEEeCCCCCcCCCCc-cCHHHHHHHHHHHHCCCcCC--HHHHHHHHHHHHHHhccccCcchHHHHHHHhhh----c
Confidence 4889999999999999996 666776554 45566543 333322110 011000 000111111000 0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEe
Q 024806 147 DEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFA 226 (262)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~ 226 (262)
..+. . .+.....+ ... .....++||+.++|+.|+++|++++|+||+....+...++++|+.++|+ .|++
T Consensus 74 ~~~~----~---~~~~~~~~-~~~-~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~--~i~~ 142 (221)
T TIGR02253 74 NPKL----V---AAFVYAYH-KLK-FAYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFD--AVIT 142 (221)
T ss_pred CHHH----H---HHHHHHHH-HHH-HHhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhcc--EEEE
Confidence 0110 1 11111111 111 1236899999999999999999999999999899999999999999999 8999
Q ss_pred CCCCCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 227 GDVVPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 227 s~~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
+++++..||+|++| ..+++++|++|++++||
T Consensus 143 ~~~~~~~KP~~~~~-----~~~~~~~~~~~~~~~~i 173 (221)
T TIGR02253 143 SEEEGVEKPHPKIF-----YAALKRLGVKPEEAVMV 173 (221)
T ss_pred eccCCCCCCCHHHH-----HHHHHHcCCChhhEEEE
Confidence 99999999999999 88999999999999986
No 21
>PLN02940 riboflavin kinase
Probab=99.90 E-value=3e-23 Score=184.53 Aligned_cols=163 Identities=20% Similarity=0.216 Sum_probs=125.3
Q ss_pred CCCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHH-HHHHHhcCCCCCCCCcHHHHHH
Q 024806 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERM-TAYFNKTGWPEKAPSDEEERKQ 153 (262)
Q Consensus 75 ~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 153 (262)
..+++||||+||||+|+... +..+|..+++++|... +.+.+... .|...... ...+.+.+.+. . .++
T Consensus 9 ~~ik~VIFDlDGTLvDt~~~-~~~a~~~~~~~~G~~~--~~~~~~~~--~G~~~~~~~~~~~~~~~~~~----~---~~~ 76 (382)
T PLN02940 9 KLVSHVILDLDGTLLNTDGI-VSDVLKAFLVKYGKQW--DGREAQKI--VGKTPLEAAATVVEDYGLPC----S---TDE 76 (382)
T ss_pred ccCCEEEECCcCcCCcCHHH-HHHHHHHHHHHcCCCC--CHHHHHHh--cCCCHHHHHHHHHHHhCCCC----C---HHH
Confidence 45899999999999999996 8889999999998764 34444443 55554443 33444444321 1 122
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHH-HhcCCCCcccceEEeCCCCCC
Q 024806 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVS-FLLGPERAEKIQIFAGDVVPR 232 (262)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~-~~~l~~~f~~~~Iv~s~~~~~ 232 (262)
+.+.+.+. +.+.. ....++||+.++|+.|+++|++++|+||+.+..++..++ .+++.++|+ .|+++++++.
T Consensus 77 ~~~~~~~~----~~~~~--~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd--~ii~~d~v~~ 148 (382)
T PLN02940 77 FNSEITPL----LSEQW--CNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFS--VIVGGDEVEK 148 (382)
T ss_pred HHHHHHHH----HHHHH--ccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCC--EEEehhhcCC
Confidence 22222222 22222 136799999999999999999999999999999998887 789999999 8999999999
Q ss_pred CCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 233 KKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 233 ~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
.||+|++| ..+++++|++|++|+||
T Consensus 149 ~KP~p~~~-----~~a~~~lgv~p~~~l~V 173 (382)
T PLN02940 149 GKPSPDIF-----LEAAKRLNVEPSNCLVI 173 (382)
T ss_pred CCCCHHHH-----HHHHHHcCCChhHEEEE
Confidence 99999999 88999999999999986
No 22
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.90 E-value=1.1e-22 Score=173.40 Aligned_cols=170 Identities=22% Similarity=0.293 Sum_probs=125.5
Q ss_pred CCCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCcHHHHHHH
Q 024806 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQF 154 (262)
Q Consensus 75 ~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (262)
.++|+|||||||||+|+.+. +..++.+++.++|.... ..+.+... .+.+...+...+....+.. ....+...+++
T Consensus 11 ~~~k~viFDlDGTL~Ds~~~-~~~a~~~~~~~~g~~~~-~~~~~~~~--~g~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 85 (272)
T PRK13223 11 RLPRLVMFDLDGTLVDSVPD-LAAAVDRMLLELGRPPA-GLEAVRHW--VGNGAPVLVRRALAGSIDH-DGVDDELAEQA 85 (272)
T ss_pred ccCCEEEEcCCCccccCHHH-HHHHHHHHHHHcCCCCC-CHHHHHHH--hChhHHHHHHHHhcccccc-cCCCHHHHHHH
Confidence 36899999999999999996 88999999999998643 23444443 5555444433321110100 01122222222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCC
Q 024806 155 IASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKK 234 (262)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~K 234 (262)
.+.+.+.|.... ....++||+.++|+.|+++|++++|+||++...++.+++.+++..+|+ .++++++++..|
T Consensus 86 ----~~~~~~~~~~~~--~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~--~i~~~d~~~~~K 157 (272)
T PRK13223 86 ----LALFMEAYADSH--ELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFR--WIIGGDTLPQKK 157 (272)
T ss_pred ----HHHHHHHHHhcC--cCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCe--EEEecCCCCCCC
Confidence 222233332211 135789999999999999999999999999999999999999999999 899999999999
Q ss_pred CChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 235 PDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 235 Pdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
|+|++| +.+++++|++|++|+||
T Consensus 158 p~p~~~-----~~~~~~~g~~~~~~l~I 180 (272)
T PRK13223 158 PDPAAL-----LFVMKMAGVPPSQSLFV 180 (272)
T ss_pred CCcHHH-----HHHHHHhCCChhHEEEE
Confidence 999999 88899999999999986
No 23
>PRK09449 dUMP phosphatase; Provisional
Probab=99.89 E-value=2.4e-22 Score=166.71 Aligned_cols=165 Identities=12% Similarity=0.165 Sum_probs=113.1
Q ss_pred CCCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCcHHHH---
Q 024806 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEER--- 151 (262)
Q Consensus 75 ~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 151 (262)
|++|+||||+||||+|.. ...++.++++.+|+..+ .+.+..+...+. .+...+.... ......
T Consensus 1 m~~k~iiFDlDGTLid~~---~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~~ 66 (224)
T PRK09449 1 MKYDWILFDADETLFHFD---AFAGLQRMFSRYGVDFT--AEDFQDYQAVNK---PLWVDYQNGA------ITALQLQHT 66 (224)
T ss_pred CCccEEEEcCCCchhcch---hhHHHHHHHHHhCCCCc--HHHHHHHHHHHH---HHHHHHHcCC------CCHHHHHHH
Confidence 368999999999999853 34688899999887643 333333211211 1111111110 011111
Q ss_pred --HHHHHHH---HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEe
Q 024806 152 --KQFIASL---HKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFA 226 (262)
Q Consensus 152 --~~~~~~~---~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~ 226 (262)
..+.+.+ .....+.|.+.+.. ...++||+.++|+.|+ +|++++|+||+....++..++.+|+.++|+ .|++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd--~v~~ 142 (224)
T PRK09449 67 RFESWAEKLNVTPGELNSAFLNAMAE-ICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFD--LLVI 142 (224)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhh-cCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcC--EEEE
Confidence 0011110 01122333333332 3679999999999999 579999999999999999999999999999 8999
Q ss_pred CCCCCCCCCChHHHhhhhhhhhhhhcccCC-cccccC
Q 024806 227 GDVVPRKKPDPVKICSLTVDIVCNVLKTHA-HKNVLV 262 (262)
Q Consensus 227 s~~~~~~KPdp~~~~~~~~~~a~~~lgv~p-~e~v~I 262 (262)
+++++..||+|++| ..+++++|+.| ++|+||
T Consensus 143 ~~~~~~~KP~p~~~-----~~~~~~~~~~~~~~~~~v 174 (224)
T PRK09449 143 SEQVGVAKPDVAIF-----DYALEQMGNPDRSRVLMV 174 (224)
T ss_pred ECccCCCCCCHHHH-----HHHHHHcCCCCcccEEEE
Confidence 99999999999999 88999999865 788886
No 24
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.89 E-value=1e-22 Score=165.82 Aligned_cols=81 Identities=20% Similarity=0.315 Sum_probs=77.8
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhccc
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLKT 254 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lgv 254 (262)
..++||+.++|+.|+++|++++|+||++...+...++++|+.++|+ .|+++++++..||+|++| +.+++++|+
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd--~i~~s~~~~~~KP~~~~~-----~~~~~~~~~ 163 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFD--AVLSADAVRAYKPAPQVY-----QLALEALGV 163 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhh--eeEehhhcCCCCCCHHHH-----HHHHHHhCC
Confidence 6789999999999999999999999999999999999999999999 899999999999999999 889999999
Q ss_pred CCcccccC
Q 024806 255 HAHKNVLV 262 (262)
Q Consensus 255 ~p~e~v~I 262 (262)
+|+++++|
T Consensus 164 ~p~~~~~v 171 (198)
T TIGR01428 164 PPDEVLFV 171 (198)
T ss_pred ChhhEEEE
Confidence 99999986
No 25
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.89 E-value=2.5e-22 Score=164.48 Aligned_cols=153 Identities=24% Similarity=0.334 Sum_probs=117.4
Q ss_pred EEEecCccccccCcchHHHHHHHHHHHc-cCCCCCCHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHH
Q 024806 80 LLFDCDGVLVDTEKDGHRISFNDTFKEK-ELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFIASL 158 (262)
Q Consensus 80 viFD~DGTL~d~~~~~~~~a~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (262)
|||||||||+|+... +..+++++++++ |.+. .+.+.+... .|.....+.+. .+.+ ... ...+
T Consensus 1 iiFDlDGTL~Ds~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~--~g~~~~~~~~~---~~~~------~~~----~~~~ 63 (205)
T TIGR01454 1 VVFDLDGVLVDSFAV-MREAFAIAYREVVGDGP-APFEEYRRH--LGRYFPDIMRI---MGLP------LEM----EEPF 63 (205)
T ss_pred CeecCcCccccCHHH-HHHHHHHHHHHhcCCCC-CCHHHHHHH--hCccHHHHHHH---cCCC------HHH----HHHH
Confidence 699999999999996 889999999884 6643 244555554 55554444332 2221 111 1111
Q ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChH
Q 024806 159 HKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPV 238 (262)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~ 238 (262)
.. +.+ .. .....++||+.++|+.|+++|++++|+||+....+...++.+|+.++|+ .++++++++..||+|+
T Consensus 64 ~~---~~~-~~--~~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~--~i~~~~~~~~~KP~~~ 135 (205)
T TIGR01454 64 VR---ESY-RL--AGEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFD--HVIGSDEVPRPKPAPD 135 (205)
T ss_pred HH---HHH-Hh--hcccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhhee--eEEecCcCCCCCCChH
Confidence 11 111 11 1247899999999999999999999999999999999999999999999 8999999999999999
Q ss_pred HHhhhhhhhhhhhcccCCcccccC
Q 024806 239 KICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 239 ~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
+| ..+++++|++|++++||
T Consensus 136 ~~-----~~~~~~~~~~~~~~l~i 154 (205)
T TIGR01454 136 IV-----REALRLLDVPPEDAVMV 154 (205)
T ss_pred HH-----HHHHHHcCCChhheEEE
Confidence 99 88899999999999986
No 26
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.89 E-value=2.8e-22 Score=163.22 Aligned_cols=173 Identities=15% Similarity=0.069 Sum_probs=116.3
Q ss_pred cEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCC-------HHHHHHHHHhcCCCCCCCCcHHH
Q 024806 78 SALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGG-------KERMTAYFNKTGWPEKAPSDEEE 150 (262)
Q Consensus 78 k~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 150 (262)
++|||||||||+|+.+. +..+++++++++|.. ..+.+.+..+...+.. ...+...+....... ......
T Consensus 1 ~~viFD~DGTLiDs~~~-~~~a~~~~~~~~g~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 76 (197)
T TIGR01548 1 QALVLDMDGVMADVSQS-YRRAIIDTVEHFGGV-SVTHADIDHTKLAGNANNDWQLTHRLVVDGLNSASSER--VRDAPT 76 (197)
T ss_pred CceEEecCceEEechHH-HHHHHHHHHHHHcCC-CCCHHHHHHHHHccCccCchHHHHHHHHHhhhcccchh--ccCCcc
Confidence 47999999999999996 889999999999753 2234556555322221 122333332110000 001111
Q ss_pred HHHHHHHHHHHHHHH--HHHHH-Hh-cCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEe
Q 024806 151 RKQFIASLHKRKTEL--FMVLI-EK-KLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFA 226 (262)
Q Consensus 151 ~~~~~~~~~~~~~~~--~~~~~-~~-~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~ 226 (262)
.+++.+.+.+.+... +.... .. ....+.+++.++|+.|+++|++++|+||+++..++.+++.+|+..+|+ .+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~--~~~~ 154 (197)
T TIGR01548 77 LEAVTAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFP--VQIW 154 (197)
T ss_pred HHHHHHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCC--EEEe
Confidence 122222222221110 00000 00 012455677999999999999999999999999999999999999999 8999
Q ss_pred CCCCCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 227 GDVVPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 227 s~~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
++++.. ||+|++| ..+++++|++|++|+||
T Consensus 155 ~~~~~~-KP~p~~~-----~~~~~~~~~~~~~~i~v 184 (197)
T TIGR01548 155 MEDCPP-KPNPEPL-----ILAAKALGVEACHAAMV 184 (197)
T ss_pred ecCCCC-CcCHHHH-----HHHHHHhCcCcccEEEE
Confidence 998877 9999999 78899999999999986
No 27
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.89 E-value=5.8e-22 Score=164.41 Aligned_cols=168 Identities=22% Similarity=0.308 Sum_probs=126.7
Q ss_pred CCCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHH-HHhcCCCCCCCCcHHHHHH
Q 024806 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAY-FNKTGWPEKAPSDEEERKQ 153 (262)
Q Consensus 75 ~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 153 (262)
+++++|+||+||||+|+... +..++..+++++|.... +.+.+... .+.+...+... +...+. .......++
T Consensus 4 ~~~~~iiFD~DGTL~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~--~g~~~~~~~~~~~~~~~~----~~~~~~~~~ 75 (226)
T PRK13222 4 MDIRAVAFDLDGTLVDSAPD-LAAAVNAALAALGLPPA-GEERVRTW--VGNGADVLVERALTWAGR----EPDEELLEK 75 (226)
T ss_pred CcCcEEEEcCCcccccCHHH-HHHHHHHHHHHCCCCCC-CHHHHHHH--hCccHHHHHHHHHhhccC----CccHHHHHH
Confidence 56899999999999999886 77899999999887643 34455443 45554444333 322111 122333233
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCC
Q 024806 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK 233 (262)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~ 233 (262)
.. ..+.+.|.+... ....++||+.++|+.|+++|++++|+||+....+..+++.+++..+|+ .++++++++..
T Consensus 76 ~~----~~~~~~~~~~~~-~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~--~~~~~~~~~~~ 148 (226)
T PRK13222 76 LR----ELFDRHYAENVA-GGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFS--VVIGGDSLPNK 148 (226)
T ss_pred HH----HHHHHHHHHhcc-ccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCcc--EEEcCCCCCCC
Confidence 23 333333443322 236799999999999999999999999999999999999999999999 89999999999
Q ss_pred CCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 234 KPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 234 KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
||+|++| +.++++++++|+++++|
T Consensus 149 kp~~~~~-----~~~~~~~~~~~~~~i~i 172 (226)
T PRK13222 149 KPDPAPL-----LLACEKLGLDPEEMLFV 172 (226)
T ss_pred CcChHHH-----HHHHHHcCCChhheEEE
Confidence 9999999 88999999999999986
No 28
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.88 E-value=3.3e-22 Score=165.91 Aligned_cols=82 Identities=9% Similarity=0.097 Sum_probs=78.2
Q ss_pred CCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhcc
Q 024806 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLK 253 (262)
Q Consensus 174 ~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lg 253 (262)
...++||+.++|+.|+++|++++|+||+.+..++..++++|+.++|+ .|+++++++..||+|++| ..+++++|
T Consensus 91 ~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd--~iv~s~~~~~~KP~p~~~-----~~~~~~~~ 163 (224)
T PRK14988 91 RAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLD--LLLSTHTFGYPKEDQRLW-----QAVAEHTG 163 (224)
T ss_pred cCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCC--EEEEeeeCCCCCCCHHHH-----HHHHHHcC
Confidence 37899999999999999999999999999999999999999999999 899999999999999999 88999999
Q ss_pred cCCcccccC
Q 024806 254 THAHKNVLV 262 (262)
Q Consensus 254 v~p~e~v~I 262 (262)
++|++|+||
T Consensus 164 ~~p~~~l~i 172 (224)
T PRK14988 164 LKAERTLFI 172 (224)
T ss_pred CChHHEEEE
Confidence 999999986
No 29
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.88 E-value=1.7e-21 Score=161.33 Aligned_cols=165 Identities=15% Similarity=0.225 Sum_probs=115.6
Q ss_pred CcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCcHHH-HHHHH
Q 024806 77 PSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEE-RKQFI 155 (262)
Q Consensus 77 ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 155 (262)
+|+|+||+||||+|+... +..++.++++++|+... ......+ .+.+. ..+..+.. +. ..... ..+.+
T Consensus 1 ~k~viFD~DGTL~d~~~~-~~~~~~~~~~~~g~~~~--~~~~~~~--~~~~~-~~~~~~~~-~~-----~~~~~~~~~~~ 68 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAA-EALALRLLFEDQGIPLT--EDMFAQY--KEINQ-GLWRAYEE-GK-----ITKDEVVNTRF 68 (224)
T ss_pred CCEEEEcCcCcccccchH-HHHHHHHHHHHhCCCcc--HHHHHHH--HHHhH-HHHHHHHc-CC-----CCHHHHHHHHH
Confidence 689999999999999996 77889999999887643 2222221 11111 11111111 10 01110 00000
Q ss_pred HHHH---------HHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEe
Q 024806 156 ASLH---------KRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFA 226 (262)
Q Consensus 156 ~~~~---------~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~ 226 (262)
..+. +...+.|...... ...++||+.++|+.|+++ ++++|+||+....++..++.+++..+|+ .|++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd--~i~~ 144 (224)
T TIGR02254 69 SALLKEYNTEADEALLNQKYLRFLEE-GHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFD--DIFV 144 (224)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHhc-cCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcC--EEEE
Confidence 0000 0122233332222 367999999999999999 9999999999999999999999999999 8999
Q ss_pred CCCCCCCCCChHHHhhhhhhhhhhhc-ccCCcccccC
Q 024806 227 GDVVPRKKPDPVKICSLTVDIVCNVL-KTHAHKNVLV 262 (262)
Q Consensus 227 s~~~~~~KPdp~~~~~~~~~~a~~~l-gv~p~e~v~I 262 (262)
+++++..||+|++| ..+++++ |++|+++|||
T Consensus 145 ~~~~~~~KP~~~~~-----~~~~~~~~~~~~~~~v~i 176 (224)
T TIGR02254 145 SEDAGIQKPDKEIF-----NYALERMPKFSKEEVLMI 176 (224)
T ss_pred cCccCCCCCCHHHH-----HHHHHHhcCCCchheEEE
Confidence 99999999999999 8899999 9999999987
No 30
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.88 E-value=1.6e-21 Score=165.93 Aligned_cols=158 Identities=16% Similarity=0.162 Sum_probs=118.0
Q ss_pred CCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCcHHHHHHHH
Q 024806 76 LPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFI 155 (262)
Q Consensus 76 ~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (262)
.+++||||+||||+|+.+. +..+++++++++|+... +.+.+... .+...+.+.+. .++ .....+++.
T Consensus 61 ~~k~vIFDlDGTLiDS~~~-~~~a~~~~~~~~G~~~~-~~~~~~~~--~g~~~~~i~~~---~~~------~~~~~~~~~ 127 (273)
T PRK13225 61 TLQAIIFDFDGTLVDSLPT-VVAIANAHAPDFGYDPI-DERDYAQL--RQWSSRTIVRR---AGL------SPWQQARLL 127 (273)
T ss_pred hcCEEEECCcCccccCHHH-HHHHHHHHHHHCCCCCC-CHHHHHHH--hCccHHHHHHH---cCC------CHHHHHHHH
Confidence 5899999999999999996 78899999999998633 34555554 44444444332 222 122223333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCC
Q 024806 156 ASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKP 235 (262)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KP 235 (262)
+.+.+ .+.... ....++||+.++|+.|+++|++++|+||+....++.+++++|+.++|+ .+++++++. |
T Consensus 128 ~~~~~----~~~~~~--~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~--~vi~~~~~~---~ 196 (273)
T PRK13225 128 QRVQR----QLGDCL--PALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFS--VVQAGTPIL---S 196 (273)
T ss_pred HHHHH----HHHhhc--ccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheE--EEEecCCCC---C
Confidence 33322 232221 236889999999999999999999999999999999999999999999 788777642 4
Q ss_pred ChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 236 DPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 236 dp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
+|++| ..+++++|++|++|+||
T Consensus 197 k~~~~-----~~~l~~~~~~p~~~l~I 218 (273)
T PRK13225 197 KRRAL-----SQLVAREGWQPAAVMYV 218 (273)
T ss_pred CHHHH-----HHHHHHhCcChhHEEEE
Confidence 46778 77899999999999986
No 31
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.87 E-value=5.6e-22 Score=157.15 Aligned_cols=154 Identities=23% Similarity=0.317 Sum_probs=115.2
Q ss_pred EEEecCccccccCcchHHHHHHH-HHHHccCCCCCCHHHHHHHHHhCCCHHHHHHH-HHhcCCCCCCCCcHHHHHHHHHH
Q 024806 80 LLFDCDGVLVDTEKDGHRISFND-TFKEKELGVTWDVDLYGELLKIGGGKERMTAY-FNKTGWPEKAPSDEEERKQFIAS 157 (262)
Q Consensus 80 viFD~DGTL~d~~~~~~~~a~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 157 (262)
|+||+||||+|+... +..++.. +++.++.. .+.+.++.. .+......... +... ...
T Consensus 1 iifD~dgtL~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~------- 59 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPA-IFRALQRLALEEFGLE--ISAEELREL--FGKSYEEALERLLERF---------GID------- 59 (176)
T ss_dssp EEEESBTTTEEHHHH-HHHHHHHHHHHHTTHH--HHHHHHHHH--TTSHHHHHHHHHHHHH---------HHH-------
T ss_pred cEEECCCCcEeCHHH-HHHHHHHHHHHHhCCC--CCHHHHHHH--hCCCHHHHHHHhhhcc---------chh-------
Confidence 799999999999985 6677877 46776655 223444443 33333333332 2211 000
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCCh
Q 024806 158 LHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDP 237 (262)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp 237 (262)
.....+.+.+.......+++||+.++|+.|+++|++++++||++...++..++++|+.++|+ .++++++.+..||+|
T Consensus 60 -~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~--~i~~~~~~~~~Kp~~ 136 (176)
T PF13419_consen 60 -PEEIQELFREYNLESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFD--EIISSDDVGSRKPDP 136 (176)
T ss_dssp -HHHHHHHHHHHHHHGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCS--EEEEGGGSSSSTTSH
T ss_pred -HHHHHHHhhhhhhhhccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccc--cccccchhhhhhhHH
Confidence 12222333333222357899999999999999999999999999999999999999999999 899999999999999
Q ss_pred HHHhhhhhhhhhhhcccCCcccccC
Q 024806 238 VKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 238 ~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
++| +.+++++|++|++++||
T Consensus 137 ~~~-----~~~~~~~~~~p~~~~~v 156 (176)
T PF13419_consen 137 DAY-----RRALEKLGIPPEEILFV 156 (176)
T ss_dssp HHH-----HHHHHHHTSSGGGEEEE
T ss_pred HHH-----HHHHHHcCCCcceEEEE
Confidence 999 88999999999999986
No 32
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.87 E-value=1.1e-21 Score=161.38 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=106.4
Q ss_pred CcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCcHHHHHHHHH
Q 024806 77 PSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFIA 156 (262)
Q Consensus 77 ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (262)
+|+||||+||||+|+.. ...+|...+...|++ ..+....+ .+.....+.+.+. .|- ...+ ++.+
T Consensus 2 ik~viFDldGtL~d~~~--~~~~~~~~~~~~g~~---~~~~~~~~--~~~~~~~~~~~~~-~g~-----~~~~---~~~~ 65 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSPG--VMRRWETERGLPGLK---DFIVTVNI--TGPDFNPWARTFE-RGE-----LTAE---AFDG 65 (211)
T ss_pred ceEEEEecCCceecCHH--HHHHHHHHcCCCCCc---cHHHHHHh--cCCCCChHHHHHH-cCC-----CCHH---HHHH
Confidence 68999999999999865 444666655555543 12222222 3443333333222 110 1111 1222
Q ss_pred HHHHHH----------HHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHH--HHHHHHHhcCCCCcccceE
Q 024806 157 SLHKRK----------TELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKA--VTAIVSFLLGPERAEKIQI 224 (262)
Q Consensus 157 ~~~~~~----------~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~--~~~~L~~~~l~~~f~~~~I 224 (262)
.+.+.. .+.+.. .......++||+.++|+.|+++|++++|+||+.... ....+...++.++|+ .|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd--~v 142 (211)
T TIGR02247 66 LFRHEYGLRLGHDVRIAPVFPL-LYGENTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFD--AV 142 (211)
T ss_pred HHHHHhccccCCCcCchhhHHH-HhccccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCC--EE
Confidence 222111 111222 122247799999999999999999999999987543 333444567889999 89
Q ss_pred EeCCCCCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 225 FAGDVVPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 225 v~s~~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
+++++++..||+|++| +.+++++|+.|++|+||
T Consensus 143 ~~s~~~~~~KP~p~~~-----~~~~~~~g~~~~~~l~i 175 (211)
T TIGR02247 143 VESCLEGLRKPDPRIY-----QLMLERLGVAPEECVFL 175 (211)
T ss_pred EEeeecCCCCCCHHHH-----HHHHHHcCCCHHHeEEE
Confidence 9999999999999999 88999999999999986
No 33
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.87 E-value=4e-21 Score=175.37 Aligned_cols=165 Identities=19% Similarity=0.215 Sum_probs=118.1
Q ss_pred CCCCcEEEEecCccccccCcchHHHHHHHHHHHccC----CCCCCHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCcHH
Q 024806 74 SVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKEL----GVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEE 149 (262)
Q Consensus 74 ~~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (262)
.+|+++|||||||||+|+... +..+|.+++++++. ......+.+... .|.+.......+... ....
T Consensus 238 ~~m~k~vIFDlDGTLiDs~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~G~~~~~~~~~l~~~-------~~~~ 307 (459)
T PRK06698 238 NEMLQALIFDMDGTLFQTDKI-LELSLDDTFDHLRSLQLWDTVTPIDKYREI--MGVPLPKVWEALLPD-------HSLE 307 (459)
T ss_pred HHhhhheeEccCCceecchhH-HHHHHHHHHHHHhhhcccCCCCCHHHHHHH--cCCChHHHHHHHhhh-------cchh
Confidence 567899999999999999997 88899999998741 111123445444 566655554443211 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCC
Q 024806 150 ERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV 229 (262)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~ 229 (262)
. .+.....+.+.+.+.+.....+++||+.++|+.|+++|++++|+||+....++..++.+++.+||+ .++++++
T Consensus 308 ~----~~~~~~~~~~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~--~i~~~d~ 381 (459)
T PRK06698 308 I----REQTDAYFLERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVT--ETFSIEQ 381 (459)
T ss_pred H----HHHHHHHHHHHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcc--eeEecCC
Confidence 1 112222223333333333346899999999999999999999999999999999999999999999 8999988
Q ss_pred CCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 230 VPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 230 ~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
+. .||+|++| ..++++++ |++|++|
T Consensus 382 v~-~~~kP~~~-----~~al~~l~--~~~~v~V 406 (459)
T PRK06698 382 IN-SLNKSDLV-----KSILNKYD--IKEAAVV 406 (459)
T ss_pred CC-CCCCcHHH-----HHHHHhcC--cceEEEE
Confidence 74 46778888 66777764 6889876
No 34
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.86 E-value=1.4e-20 Score=185.47 Aligned_cols=168 Identities=26% Similarity=0.278 Sum_probs=125.3
Q ss_pred CCCCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHHHH-hcCCCCCCCCcHHHHH
Q 024806 74 SVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFN-KTGWPEKAPSDEEERK 152 (262)
Q Consensus 74 ~~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (262)
-+++++|||||||||+|+... +..+|.++++++|++. +.+.+... .+.+...+...+. ..+.+. ... +
T Consensus 72 ~~~ikaVIFDlDGTLiDS~~~-~~~a~~~~~~~~G~~i--t~e~~~~~--~G~~~~~~~~~~~~~~~l~~---~~~---~ 140 (1057)
T PLN02919 72 WGKVSAVLFDMDGVLCNSEEP-SRRAAVDVFAEMGVEV--TVEDFVPF--MGTGEANFLGGVASVKGVKG---FDP---D 140 (1057)
T ss_pred CCCCCEEEECCCCCeEeChHH-HHHHHHHHHHHcCCCC--CHHHHHHH--hCCCHHHHHHHHHHhcCCCC---CCH---H
Confidence 347899999999999999996 8899999999998864 34555544 5655555544332 222211 111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCC-CCcccceEEeCCCCC
Q 024806 153 QFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP-ERAEKIQIFAGDVVP 231 (262)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~-~~f~~~~Iv~s~~~~ 231 (262)
+..+.+.+.+.+.|.. .....++||+.++|+.|+++|++++|+||+....++..++++++. .+|+ .++++++++
T Consensus 141 ~~~~~~~~~~~~~~~~---~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd--~iv~~~~~~ 215 (1057)
T PLN02919 141 AAKKRFFEIYLEKYAK---PNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFD--AIVSADAFE 215 (1057)
T ss_pred HHHHHHHHHHHHHhhh---cccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCC--EEEECcccc
Confidence 1122222222222211 112347999999999999999999999999999999999999996 7899 899999999
Q ss_pred CCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 232 RKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 232 ~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
..||+|++| ..+++++|+.|++|+||
T Consensus 216 ~~KP~Pe~~-----~~a~~~lgv~p~e~v~I 241 (1057)
T PLN02919 216 NLKPAPDIF-----LAAAKILGVPTSECVVI 241 (1057)
T ss_pred cCCCCHHHH-----HHHHHHcCcCcccEEEE
Confidence 999999999 78899999999999986
No 35
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.86 E-value=6.5e-21 Score=158.36 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=77.4
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhccc
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLKT 254 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lgv 254 (262)
.+++|++.++|+.|+++ ++++|+||+....+...++++|+.++|| .|++|+++|..||+|++| +.+++++|+
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd--~v~~s~~~g~~KP~~~~f-----~~~~~~~g~ 169 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFD--AVFISEDVGVAKPDPEIF-----EYALEKLGV 169 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhh--eEEEecccccCCCCcHHH-----HHHHHHcCC
Confidence 78999999999999999 9999999999899999999999999999 999999999999999999 999999999
Q ss_pred CCcccccC
Q 024806 255 HAHKNVLV 262 (262)
Q Consensus 255 ~p~e~v~I 262 (262)
+|++++||
T Consensus 170 ~p~~~l~V 177 (229)
T COG1011 170 PPEEALFV 177 (229)
T ss_pred CcceEEEE
Confidence 99999986
No 36
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.85 E-value=1.9e-20 Score=156.88 Aligned_cols=162 Identities=14% Similarity=0.040 Sum_probs=106.1
Q ss_pred CCCcEEEEecCccccccCcchHHHHHHHHHHHccCCC----CCCHHHHHHHHH---hCC----------CHHHHHHHHHh
Q 024806 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGV----TWDVDLYGELLK---IGG----------GKERMTAYFNK 137 (262)
Q Consensus 75 ~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~----~~~~~~~~~~~~---~~~----------~~~~~~~~~~~ 137 (262)
.++|+|+||+||||+|+.+. +..+++++++..+... .+....+..+.. ... ....+...+..
T Consensus 8 ~~~k~iiFDlDGTL~D~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (238)
T PRK10748 8 GRISALTFDLDDTLYDNRPV-ILRTEQEALAFVQNYHPALRSFQNEDLQRLRQALREAEPEIYHDVTRWRWRAIEQAMLD 86 (238)
T ss_pred CCceeEEEcCcccccCChHH-HHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHHHHhCchhhCcHHHHHHHHHHHHHHH
Confidence 46899999999999999995 7888888776542111 111121221100 000 01112223333
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC
Q 024806 138 TGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (262)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~ 217 (262)
.|.+ ....+.. .....+.+.... ....++||+.++|+.|+++ ++++|+||++.. ++.+|+.+
T Consensus 87 ~g~~------~~~~~~~----~~~~~~~~~~~~--~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~~ 148 (238)
T PRK10748 87 AGLS------AEEASAG----ADAAMINFAKWR--SRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLGD 148 (238)
T ss_pred cCCC------HHHHHHH----HHHHHHHHHHHh--hcCCCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcHH
Confidence 3321 1111111 111111222211 1368999999999999975 999999998754 47789999
Q ss_pred CcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 218 RAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 218 ~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
+|+ .|+++++++..||+|++| +.+++++|+.|++|+||
T Consensus 149 ~fd--~i~~~~~~~~~KP~p~~~-----~~a~~~~~~~~~~~~~V 186 (238)
T PRK10748 149 YFE--FVLRAGPHGRSKPFSDMY-----HLAAEKLNVPIGEILHV 186 (238)
T ss_pred hhc--eeEecccCCcCCCcHHHH-----HHHHHHcCCChhHEEEE
Confidence 999 899999999999999999 88899999999999987
No 37
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.85 E-value=8.6e-21 Score=152.75 Aligned_cols=153 Identities=12% Similarity=0.171 Sum_probs=104.7
Q ss_pred cEEEEecCccccccCcchHHHHHHHHHH-----HccCCCCCCHHHHHHHH--HhCCCHHHHHHHHHhcCCCCCCCCcHHH
Q 024806 78 SALLFDCDGVLVDTEKDGHRISFNDTFK-----EKELGVTWDVDLYGELL--KIGGGKERMTAYFNKTGWPEKAPSDEEE 150 (262)
Q Consensus 78 k~viFD~DGTL~d~~~~~~~~a~~~~~~-----~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (262)
++||||+||||+|+... +..++++.+. ++|++.. +...+...+ ..|.....+. ...+ ...
T Consensus 1 ~~viFDlDGTL~ds~~~-~~~~~~~~~~~~~~~~~g~~~~-~~~~l~~~~~~~~g~~~~~~~---~~~~------~~~-- 67 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAG-IFLQIDRNITEFVAARLKLSEE-EARVLRKDYYREYGTTLAGLM---ILHE------IDA-- 67 (184)
T ss_pred CeEEEeCCCCCCCCccc-HHHHHHHHHHHHHHHHcCcCHH-HHHHHHHHHHHHHchHHHHHH---HhhC------CCH--
Confidence 47999999999999886 6677777654 4455422 111121110 1222222221 1111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCC
Q 024806 151 RKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVV 230 (262)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~ 230 (262)
+++.+.+.+. .......++||+.++|+.|+ ++++|+||++...+...++.+|+.++|+ .|++++++
T Consensus 68 -~~~~~~~~~~--------~~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd--~i~~~~~~ 133 (184)
T TIGR01993 68 -DEYLRYVHGR--------LPYEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFD--GIFCFDTA 133 (184)
T ss_pred -HHHHHHHhcc--------CCHHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhC--eEEEeecc
Confidence 1122222110 00113678999999999997 5899999999999999999999999999 89999988
Q ss_pred CC----CCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 231 PR----KKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 231 ~~----~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
+. .||+|++| +.+++++|++|++|+||
T Consensus 134 ~~~~~~~KP~p~~~-----~~~~~~~~~~~~~~l~v 164 (184)
T TIGR01993 134 NPDYLLPKPSPQAY-----EKALREAGVDPERAIFF 164 (184)
T ss_pred cCccCCCCCCHHHH-----HHHHHHhCCCccceEEE
Confidence 87 59999999 88899999999999986
No 38
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.84 E-value=2.8e-20 Score=151.85 Aligned_cols=163 Identities=25% Similarity=0.292 Sum_probs=125.9
Q ss_pred CCCCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHHHH-hcCCCCCCCCcHHHHH
Q 024806 74 SVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFN-KTGWPEKAPSDEEERK 152 (262)
Q Consensus 74 ~~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (262)
+..+.+++||+||||+|++.. +.++|++++.+||...++ +..... .|....++.+.+. ... .....+
T Consensus 7 ~~~~~~~lfD~dG~lvdte~~-y~~~~~~~~~~ygk~~~~--~~~~~~--mG~~~~eaa~~~~~~~~-------dp~s~e 74 (222)
T KOG2914|consen 7 SLKVSACLFDMDGTLVDTEDL-YTEAWQELLDRYGKPYPW--DVKVKS--MGKRTSEAARLFVKKLP-------DPVSRE 74 (222)
T ss_pred ccceeeEEEecCCcEEecHHH-HHHHHHHHHHHcCCCChH--HHHHHH--cCCCHHHHHHHHHhhcC-------CCCCHH
Confidence 356789999999999999997 889999999999985443 444443 7777777776664 221 122233
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhc-CCCCcccceEEe--CCC
Q 024806 153 QFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLL-GPERAEKIQIFA--GDV 229 (262)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~-l~~~f~~~~Iv~--s~~ 229 (262)
++..+......+.+. ...++||+.++++.|+.+|++++++|+.++..++..+++++ +...|+ .++. +.+
T Consensus 75 e~~~e~~~~~~~~~~------~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~--~~v~~d~~~ 146 (222)
T KOG2914|consen 75 EFNKEEEEILDRLFM------NSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFS--HVVLGDDPE 146 (222)
T ss_pred HHHHHHHHHHHHhcc------ccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcC--CCeecCCcc
Confidence 444444444333332 36789999999999999999999999999999999999986 778888 5555 668
Q ss_pred CCCCCCChHHHhhhhhhhhhhhcccCC-ccccc
Q 024806 230 VPRKKPDPVKICSLTVDIVCNVLKTHA-HKNVL 261 (262)
Q Consensus 230 ~~~~KPdp~~~~~~~~~~a~~~lgv~p-~e~v~ 261 (262)
+..+||+|++| ..|++++|..| +.|++
T Consensus 147 v~~gKP~Pdi~-----l~A~~~l~~~~~~k~lV 174 (222)
T KOG2914|consen 147 VKNGKPDPDIY-----LKAAKRLGVPPPSKCLV 174 (222)
T ss_pred ccCCCCCchHH-----HHHHHhcCCCCccceEE
Confidence 89999999999 78899999988 77765
No 39
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.84 E-value=2.1e-20 Score=146.10 Aligned_cols=140 Identities=24% Similarity=0.266 Sum_probs=106.2
Q ss_pred EEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHH
Q 024806 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFIASL 158 (262)
Q Consensus 79 ~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (262)
+|+||+||||+|+... +..+|.++++++|. +.+.+... .|...+.+..... ..+++
T Consensus 1 ~iifD~DGTL~d~~~~-~~~~~~~~~~~~~~----~~~~~~~~--~g~~~~~~~~~~~-----------------~~~~~ 56 (154)
T TIGR01549 1 AILFDIDGTLVDSSFA-IRRAFEETLEEFGE----DFQALKAL--RGLAEELLYRIAT-----------------SFEEL 56 (154)
T ss_pred CeEecCCCcccccHHH-HHHHHHHHHHHhcc----cHHHHHHH--HccChHHHHHHHH-----------------HHHHH
Confidence 4899999999999885 88899999999874 23333332 2222222211110 01111
Q ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChH
Q 024806 159 HKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPV 238 (262)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~ 238 (262)
.. |. .....+||+.++|+.|+++|++++|+||+.+..+...++.+ +.++|+ .++++++++ .||+|+
T Consensus 57 ~~-----~~-----~~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~--~i~~~~~~~-~Kp~~~ 122 (154)
T TIGR01549 57 LG-----YD-----AEEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFD--LILGSDEFG-AKPEPE 122 (154)
T ss_pred hC-----cc-----hhheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCc--EEEecCCCC-CCcCHH
Confidence 11 11 12457899999999999999999999999999999999998 888998 889999888 999999
Q ss_pred HHhhhhhhhhhhhcccCCcccccC
Q 024806 239 KICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 239 ~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
+| ..+++++|++| +|+||
T Consensus 123 ~~-----~~~~~~~~~~~-~~l~i 140 (154)
T TIGR01549 123 IF-----LAALESLGLPP-EVLHV 140 (154)
T ss_pred HH-----HHHHHHcCCCC-CEEEE
Confidence 99 88999999999 99986
No 40
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.83 E-value=9.7e-21 Score=151.13 Aligned_cols=150 Identities=22% Similarity=0.290 Sum_probs=102.1
Q ss_pred EEEEecCccccccCcchHHHHHHHHHHHccCCC-CCCHH----HHHHHHHhCC--CH-H----HHHHHHHhcCCCCCCCC
Q 024806 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGV-TWDVD----LYGELLKIGG--GK-E----RMTAYFNKTGWPEKAPS 146 (262)
Q Consensus 79 ~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~-~~~~~----~~~~~~~~~~--~~-~----~~~~~~~~~~~~~~~~~ 146 (262)
+|+||+||||+|+... +..+++.++.+.+... .+... .+... ..+. .. + .+.....+.|.+.
T Consensus 1 ~viFD~DGTL~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~---- 74 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGG-VRACLAAIAPEGGAFSDLWRAKQQEYSWRRS-LMGDRRAFPEDTVRALRYIADRLGLDA---- 74 (175)
T ss_pred CeEEecCCcCcccHHH-HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HhcCcCCHHHHHHHHHHHHHHHcCCCC----
Confidence 5899999999999986 7778888877643210 01111 11111 0111 11 1 1222222333221
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEe
Q 024806 147 DEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFA 226 (262)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~ 226 (262)
..+ +.+. +.+.+. ...++||+.++|+ +++|+||++...++..++++|+.++|+ .|++
T Consensus 75 ~~~--------~~~~----~~~~~~--~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd--~v~~ 131 (175)
T TIGR01493 75 EPK--------YGER----LRDAYK--NLPPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFD--RAFS 131 (175)
T ss_pred CHH--------HHHH----HHHHHh--cCCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHh--hhcc
Confidence 111 1111 111111 3679999999998 379999999999999999999999999 7899
Q ss_pred CCCCCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 227 GDVVPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 227 s~~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
+++++..||+|++| ..+++++|++|++|+||
T Consensus 132 ~~~~~~~KP~p~~f-----~~~~~~~~~~p~~~l~v 162 (175)
T TIGR01493 132 VDTVRAYKPDPVVY-----ELVFDTVGLPPDRVLMV 162 (175)
T ss_pred HhhcCCCCCCHHHH-----HHHHHHHCCCHHHeEeE
Confidence 99999999999999 88999999999999987
No 41
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.82 E-value=1.9e-19 Score=144.27 Aligned_cols=80 Identities=24% Similarity=0.275 Sum_probs=74.1
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhccc
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLKT 254 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lgv 254 (262)
.+++||+.++|+.|+++|++++|+||+.... ..++.++|+.++|+ .++++++++..||+|++| +.+++++|+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~--~i~~~~~~~~~KP~~~~~-----~~~~~~~~~ 155 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFD--VVIFSGDVGRGKPDPDIY-----LLALKKLGL 155 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCC--EEEEcCCCCCCCCCHHHH-----HHHHHHcCC
Confidence 5789999999999999999999999999887 66776799999999 899999999999999999 888999999
Q ss_pred CCcccccC
Q 024806 255 HAHKNVLV 262 (262)
Q Consensus 255 ~p~e~v~I 262 (262)
+|++++||
T Consensus 156 ~~~~~~~v 163 (183)
T TIGR01509 156 KPEECLFV 163 (183)
T ss_pred CcceEEEE
Confidence 99999986
No 42
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.81 E-value=1.8e-19 Score=146.83 Aligned_cols=81 Identities=22% Similarity=0.229 Sum_probs=73.4
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH-hcCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhcc
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF-LLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLK 253 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~-~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lg 253 (262)
..++||+.++|+.|+++|++++|+||++...+...+.. .++..+|+ .++++++++..||+|++| +.+++++|
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd--~v~~s~~~~~~KP~p~~~-----~~~~~~~~ 155 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAAD--HIYLSQDLGMRKPEARIY-----QHVLQAEG 155 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcC--EEEEecccCCCCCCHHHH-----HHHHHHcC
Confidence 46899999999999999999999999998877766655 36788999 899999999999999999 88999999
Q ss_pred cCCcccccC
Q 024806 254 THAHKNVLV 262 (262)
Q Consensus 254 v~p~e~v~I 262 (262)
++|++|+||
T Consensus 156 ~~p~~~l~v 164 (199)
T PRK09456 156 FSAADAVFF 164 (199)
T ss_pred CChhHeEEe
Confidence 999999986
No 43
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.80 E-value=2.1e-19 Score=147.23 Aligned_cols=171 Identities=16% Similarity=0.164 Sum_probs=115.9
Q ss_pred CCCCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHH----HH----h--------C-CCHHHHHHHHH
Q 024806 74 SVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGEL----LK----I--------G-GGKERMTAYFN 136 (262)
Q Consensus 74 ~~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~----~~----~--------~-~~~~~~~~~~~ 136 (262)
.+.+++|+||++|||+.+.+. ..+.+..+.+.+|+..+. +..... +. . | .+...++..+-
T Consensus 4 ~~~iravtfD~~~tLl~~~~~-~~~~y~~i~~~~gl~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~lv 80 (237)
T KOG3085|consen 4 LMRIRAVTFDAGGTLLATLPP-VMEVYCEIAEAYGLEYDD--SLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPKLV 80 (237)
T ss_pred ccceEEEEEeCCCceeecCCc-cHHHHHHHHHHhCCCCCH--HHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHHHH
Confidence 357899999999999997775 677899999999998532 222211 10 0 0 12233333211
Q ss_pred hcCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCC
Q 024806 137 KTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (262)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~ 216 (262)
...+........+ +..+.+. ...|.... .......+++.++++.||++|..++++||.+ ...+..+..+|+.
T Consensus 81 ~~~f~~~~~~~~~---~~~~~~~---~~~~s~~~-~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d-~r~~~~l~~~~l~ 152 (237)
T KOG3085|consen 81 ESTFGKAGIDYEE---ELLENFS---FRLFSTFA-PSAWKYLDGMQELLQKLRKKGTILGIISNFD-DRLRLLLLPLGLS 152 (237)
T ss_pred HHHhccccchhHH---HHHhhhh---hheecccc-ccCceeccHHHHHHHHHHhCCeEEEEecCCc-HHHHHHhhccCHH
Confidence 1111110000000 0010000 11121111 1246778899999999999999999999999 4556888999999
Q ss_pred CCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 217 ERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 217 ~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
.||| .++.|.++|..||||.|| ..+++++|++|+|||+|
T Consensus 153 ~~fD--~vv~S~e~g~~KPDp~If-----~~al~~l~v~Pee~vhI 191 (237)
T KOG3085|consen 153 AYFD--FVVESCEVGLEKPDPRIF-----QLALERLGVKPEECVHI 191 (237)
T ss_pred Hhhh--hhhhhhhhccCCCChHHH-----HHHHHHhCCChHHeEEe
Confidence 9999 899999999999999999 88999999999999986
No 44
>PLN02811 hydrolase
Probab=99.79 E-value=2.7e-18 Score=142.09 Aligned_cols=156 Identities=19% Similarity=0.257 Sum_probs=110.7
Q ss_pred cCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHH-HHhcCCCCCCCCcHHHHHHHHHHHHHHH
Q 024806 84 CDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAY-FNKTGWPEKAPSDEEERKQFIASLHKRK 162 (262)
Q Consensus 84 ~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (262)
|||||+|+... +..+|.++++++|+.. ..+.+... .|.....+... +...+.+.. ...+ ++... .
T Consensus 1 ~DGTL~Ds~~~-~~~a~~~~~~~~g~~~--~~~~~~~~--~G~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~----~ 66 (220)
T PLN02811 1 MDGLLLDTEKF-YTEVQEKILARYGKTF--DWSLKAKM--MGKKAIEAARIFVEESGLSDS--LSPE---DFLVE----R 66 (220)
T ss_pred CCCcceecHHH-HHHHHHHHHHHcCCCC--CHHHHHHc--cCCCHHHHHHHHHHHhCCCCC--CCHH---HHHHH----H
Confidence 79999999996 8899999999999864 33444433 56655444443 333343210 1111 11111 1
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHH-HHHhcCCCCcccceEEeCC--CCCCCCCChHH
Q 024806 163 TELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAI-VSFLLGPERAEKIQIFAGD--VVPRKKPDPVK 239 (262)
Q Consensus 163 ~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~-L~~~~l~~~f~~~~Iv~s~--~~~~~KPdp~~ 239 (262)
..++.... . ...++||+.++|+.|+++|++++|+||+.+..+... ++..++.++|+ .+++++ +++..||+|++
T Consensus 67 ~~~~~~~~-~-~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~--~i~~~~~~~~~~~KP~p~~ 142 (220)
T PLN02811 67 EAMLQDLF-P-TSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMH--HVVTGDDPEVKQGKPAPDI 142 (220)
T ss_pred HHHHHHHH-h-hCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCC--EEEECChhhccCCCCCcHH
Confidence 11222211 1 367899999999999999999999999987655543 44456789999 899999 88999999999
Q ss_pred Hhhhhhhhhhhhcc---cCCcccccC
Q 024806 240 ICSLTVDIVCNVLK---THAHKNVLV 262 (262)
Q Consensus 240 ~~~~~~~~a~~~lg---v~p~e~v~I 262 (262)
| ..+++++| ++|++|+||
T Consensus 143 ~-----~~a~~~~~~~~~~~~~~v~I 163 (220)
T PLN02811 143 F-----LAAARRFEDGPVDPGKVLVF 163 (220)
T ss_pred H-----HHHHHHhCCCCCCccceEEE
Confidence 9 88889996 999999987
No 45
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.73 E-value=4.2e-17 Score=132.62 Aligned_cols=146 Identities=12% Similarity=0.106 Sum_probs=94.3
Q ss_pred CCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHH-HHHHHHhcCCCCCCCCcHHHHHHH
Q 024806 76 LPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKER-MTAYFNKTGWPEKAPSDEEERKQF 154 (262)
Q Consensus 76 ~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 154 (262)
|+|+||||+||||+|+.. ++.++++++|++. +.+... .+..... +...+. .......++
T Consensus 1 m~k~viFDlDGTLiD~~~-----~~~~~~~~~g~~~----~~~~~~--~g~~~~~~~~~~~~---------~~~~~~~~~ 60 (197)
T PHA02597 1 MKPTILTDVDGVLLSWQS-----GLPYFAQKYNIPT----DHILKM--IQDERFRDPGELFG---------CDQELAKKL 60 (197)
T ss_pred CCcEEEEecCCceEchhh-----ccHHHHHhcCCCH----HHHHHH--HhHhhhcCHHHHhc---------ccHHHHHHH
Confidence 589999999999999554 4677788887642 333333 2322111 122111 112222333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCC----cccceEEeCCCC
Q 024806 155 IASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPER----AEKIQIFAGDVV 230 (262)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~----f~~~~Iv~s~~~ 230 (262)
.+.+.. ... .....++||+.++|+.|+++ ++++++||.........++.+++..+ |+ .++++++
T Consensus 61 ~~~~~~-------~~~-~~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~--~i~~~~~- 128 (197)
T PHA02597 61 IEKYNN-------SDF-IRYLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQFNLNALFPGAFS--EVLMCGH- 128 (197)
T ss_pred hhhhhH-------HHH-HHhccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCCHHHhCCCccc--EEEEecc-
Confidence 333221 111 11367999999999999987 57889999876666667777777654 45 5677666
Q ss_pred CCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 231 PRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 231 ~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
.||+|++| ..+++++| |+++|||
T Consensus 129 --~~~kp~~~-----~~a~~~~~--~~~~v~v 151 (197)
T PHA02597 129 --DESKEKLF-----IKAKEKYG--DRVVCFV 151 (197)
T ss_pred --CcccHHHH-----HHHHHHhC--CCcEEEe
Confidence 36778999 88899999 8888876
No 46
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.70 E-value=2.7e-16 Score=127.93 Aligned_cols=86 Identities=20% Similarity=0.102 Sum_probs=68.7
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHH----hh-hhhhhhh
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKI----CS-LTVDIVC 249 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~----~~-~~~~~a~ 249 (262)
..++||+.++|+.|+++|++++|+||+....++.+++.+|+..+|. .++..++.+..||++... .+ ..++.++
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~ 156 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYS--NELVFDEKGFIQPDGIVRVTFDNKGEAVERLK 156 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEE--EEEEEcCCCeEecceeeEEccccHHHHHHHHH
Confidence 6799999999999999999999999999999999999999988887 556665556666664210 00 1126678
Q ss_pred hhcccCCcccccC
Q 024806 250 NVLKTHAHKNVLV 262 (262)
Q Consensus 250 ~~lgv~p~e~v~I 262 (262)
+++|++|++++||
T Consensus 157 ~~~~~~~~~~i~i 169 (201)
T TIGR01491 157 RELNPSLTETVAV 169 (201)
T ss_pred HHhCCCHHHEEEE
Confidence 8899999999886
No 47
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.70 E-value=1.8e-16 Score=130.91 Aligned_cols=83 Identities=22% Similarity=0.143 Sum_probs=68.5
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccc-----eEEeCC---CCCCCCCChHHHhhhhhh
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKI-----QIFAGD---VVPRKKPDPVKICSLTVD 246 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~-----~Iv~s~---~~~~~KPdp~~~~~~~~~ 246 (262)
.+++||+.++|+.|+++|++++|+||+....++.+++.+|+..+|... .++++. .....+|+|.+| +
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~-----~ 158 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTL-----L 158 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHH-----H
Confidence 679999999999999999999999999999999999999999988521 122222 112356789999 8
Q ss_pred hhhhhcccCCcccccC
Q 024806 247 IVCNVLKTHAHKNVLV 262 (262)
Q Consensus 247 ~a~~~lgv~p~e~v~I 262 (262)
.+++++|++|++|+||
T Consensus 159 ~~~~~~~~~~~~~i~i 174 (219)
T TIGR00338 159 ILLRKEGISPENTVAV 174 (219)
T ss_pred HHHHHcCCCHHHEEEE
Confidence 8899999999999986
No 48
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.60 E-value=1.5e-15 Score=117.83 Aligned_cols=83 Identities=20% Similarity=0.193 Sum_probs=65.4
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCH---------------HHHHHHHHHhcCCCCcccceEE-eCCCCCCCCCChH
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNE---------------KAVTAIVSFLLGPERAEKIQIF-AGDVVPRKKPDPV 238 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~---------------~~~~~~L~~~~l~~~f~~~~Iv-~s~~~~~~KPdp~ 238 (262)
+.++||+.++|+.|+++|++++|+||+++ ..+...++++++...+....+. .+++.+..||+|+
T Consensus 26 ~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~ 105 (147)
T TIGR01656 26 WQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPG 105 (147)
T ss_pred eEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHH
Confidence 45789999999999999999999999873 5677788888875221100112 2455677899999
Q ss_pred HHhhhhhhhhhhhcccCCcccccC
Q 024806 239 KICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 239 ~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
+| +.+++++|++|++|+||
T Consensus 106 ~~-----~~~~~~~~~~~~e~i~I 124 (147)
T TIGR01656 106 LI-----LEALKRLGVDASRSLVV 124 (147)
T ss_pred HH-----HHHHHHcCCChHHEEEE
Confidence 99 88999999999999986
No 49
>PLN02954 phosphoserine phosphatase
Probab=99.59 E-value=2.7e-14 Score=118.38 Aligned_cols=153 Identities=15% Similarity=0.161 Sum_probs=92.6
Q ss_pred CCCcEEEEecCccccccCcchHHHHHHHHHHHccCCCCCCHHHHHHHHHhCCCHHHHHHH-HHhcCCCCCCCCcHHHHHH
Q 024806 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAY-FNKTGWPEKAPSDEEERKQ 153 (262)
Q Consensus 75 ~~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 153 (262)
+.+|+|+|||||||+|+. .+.++++.+|....+ .+....+............. +... . ...
T Consensus 10 ~~~k~viFDfDGTL~~~~------~~~~~~~~~g~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~--~----~~~----- 71 (224)
T PLN02954 10 RSADAVCFDVDSTVCVDE------GIDELAEFCGAGEAV-AEWTAKAMGGSVPFEEALAARLSLF--K----PSL----- 71 (224)
T ss_pred ccCCEEEEeCCCcccchH------HHHHHHHHcCChHHH-HHHHHHHHCCCCCHHHHHHHHHHHc--C----CCH-----
Confidence 468999999999999974 357777777765322 12222221111122222111 2111 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCC--CCcccceE------E
Q 024806 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP--ERAEKIQI------F 225 (262)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~--~~f~~~~I------v 225 (262)
+ . +.+.+......++||+.++|+.|+++|++++|+|++....++.+++.+|+. .+|....+ +
T Consensus 72 --~----~----~~~~~~~~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~ 141 (224)
T PLN02954 72 --S----Q----VEEFLEKRPPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEY 141 (224)
T ss_pred --H----H----HHHHHHHccCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcE
Confidence 1 1 111111113568999999999999999999999999999999999999886 45642111 1
Q ss_pred eCCC----CCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 226 AGDV----VPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 226 ~s~~----~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
.+.+ ....+|+|+++ +.+++.+|. ++++||
T Consensus 142 ~g~~~~~~~~~~~~K~~~i-----~~~~~~~~~--~~~i~i 175 (224)
T PLN02954 142 AGFDENEPTSRSGGKAEAV-----QHIKKKHGY--KTMVMI 175 (224)
T ss_pred ECccCCCcccCCccHHHHH-----HHHHHHcCC--CceEEE
Confidence 1111 12346677888 666777775 577765
No 50
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.59 E-value=2.1e-14 Score=118.30 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=68.5
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh---cCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhh
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL---LGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNV 251 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~---~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~ 251 (262)
.+++||+.++|+.|+++|++++|+||++...+...+++. ++.++|+ .++. ...+ .||+|++| ..++++
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~--~~fd-~~~g-~KP~p~~y-----~~i~~~ 164 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFS--GYFD-TTVG-LKTEAQSY-----VKIAGQ 164 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcc--eEEE-eCcc-cCCCHHHH-----HHHHHH
Confidence 579999999999999999999999999998888888876 5677887 5554 3334 69999999 889999
Q ss_pred cccCCcccccC
Q 024806 252 LKTHAHKNVLV 262 (262)
Q Consensus 252 lgv~p~e~v~I 262 (262)
+|++|++++||
T Consensus 165 lgv~p~e~lfV 175 (220)
T TIGR01691 165 LGSPPREILFL 175 (220)
T ss_pred hCcChhHEEEE
Confidence 99999999986
No 51
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.58 E-value=9.3e-15 Score=117.33 Aligned_cols=79 Identities=19% Similarity=0.224 Sum_probs=65.0
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCH---------------HHHHHHHHHhcCCCCcccceEEeC-----CCCCCCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNE---------------KAVTAIVSFLLGPERAEKIQIFAG-----DVVPRKK 234 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~---------------~~~~~~L~~~~l~~~f~~~~Iv~s-----~~~~~~K 234 (262)
+.++||+.++|+.|+++|++++|+||++. ..+...++++|+ +|+ .++.+ ++++..|
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~f~--~i~~~~~~~~~~~~~~K 103 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGG--RLD--GIYYCPHHPEDGCDCRK 103 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCC--ccc--eEEECCCCCCCCCcCCC
Confidence 46889999999999999999999999973 344556777765 466 56543 4567899
Q ss_pred CChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 235 PDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 235 Pdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
|+|++| ..+++.+|+.|++|+||
T Consensus 104 P~p~~~-----~~~~~~l~~~~~~~~~V 126 (181)
T PRK08942 104 PKPGML-----LSIAERLNIDLAGSPMV 126 (181)
T ss_pred CCHHHH-----HHHHHHcCCChhhEEEE
Confidence 999999 88999999999999986
No 52
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.57 E-value=2.9e-14 Score=117.95 Aligned_cols=88 Identities=15% Similarity=0.158 Sum_probs=67.7
Q ss_pred CCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC--CcccceEEeCCCCCCCCCChHHHhh-----hhhh
Q 024806 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE--RAEKIQIFAGDVVPRKKPDPVKICS-----LTVD 246 (262)
Q Consensus 174 ~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~--~f~~~~Iv~s~~~~~~KPdp~~~~~-----~~~~ 246 (262)
...++||+.++|+.|+++|++++|+||+....++.+++.+ +.. .+.....+.++.....||+|.+... ..-.
T Consensus 72 ~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~ 150 (219)
T PRK09552 72 TAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKP 150 (219)
T ss_pred CCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchH
Confidence 3789999999999999999999999999999999999987 543 3311144667777788999876310 0013
Q ss_pred hhhhhcccCCcccccC
Q 024806 247 IVCNVLKTHAHKNVLV 262 (262)
Q Consensus 247 ~a~~~lgv~p~e~v~I 262 (262)
.+++.++.++++++||
T Consensus 151 ~~l~~~~~~~~~~i~i 166 (219)
T PRK09552 151 SLIRKLSDTNDFHIVI 166 (219)
T ss_pred HHHHHhccCCCCEEEE
Confidence 5778899999999886
No 53
>PRK06769 hypothetical protein; Validated
Probab=99.55 E-value=2e-14 Score=114.58 Aligned_cols=81 Identities=9% Similarity=-0.027 Sum_probs=65.3
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHH--------HHHHHHHHhcCCCCcccceEE-eCCCCCCCCCChHHHhhhhh
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEK--------AVTAIVSFLLGPERAEKIQIF-AGDVVPRKKPDPVKICSLTV 245 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~--------~~~~~L~~~~l~~~f~~~~Iv-~s~~~~~~KPdp~~~~~~~~ 245 (262)
..++||+.++|+.|+++|++++|+||.... .....++.+|+.++|. .+. .+++++..||+|++|
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~~KP~p~~~----- 99 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYL--CPHKHGDGCECRKPSTGML----- 99 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEE--CcCCCCCCCCCCCCCHHHH-----
Confidence 467899999999999999999999998741 2344466777666554 232 466778899999999
Q ss_pred hhhhhhcccCCcccccC
Q 024806 246 DIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 246 ~~a~~~lgv~p~e~v~I 262 (262)
..+++++|++|++|+||
T Consensus 100 ~~~~~~l~~~p~~~i~I 116 (173)
T PRK06769 100 LQAAEKHGLDLTQCAVI 116 (173)
T ss_pred HHHHHHcCCCHHHeEEE
Confidence 88999999999999986
No 54
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.54 E-value=3.8e-14 Score=112.01 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=66.0
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHH------------HHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHHhhhh
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEK------------AVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLT 244 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~------------~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~ 244 (262)
++||+.++|+.|+++|++++|+||++.. .++.+++.+|+.. + .++++++....||+|++|
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~--~--~ii~~~~~~~~KP~p~~~---- 114 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPI--Q--VLAATHAGLYRKPMTGMW---- 114 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCE--E--EEEecCCCCCCCCccHHH----
Confidence 6899999999999999999999998753 5678899998843 3 566666666789999999
Q ss_pred hhhhhhhcc--cCCcccccC
Q 024806 245 VDIVCNVLK--THAHKNVLV 262 (262)
Q Consensus 245 ~~~a~~~lg--v~p~e~v~I 262 (262)
..+++++| ++|++++||
T Consensus 115 -~~~~~~~~~~~~~~~~v~V 133 (166)
T TIGR01664 115 -EYLQSQYNSPIKMTRSFYV 133 (166)
T ss_pred -HHHHHHcCCCCCchhcEEE
Confidence 78899999 999999986
No 55
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.54 E-value=4.4e-14 Score=107.46 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=65.8
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCC--------HHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHHhhhhhh
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN--------EKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVD 246 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~--------~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~ 246 (262)
..++||+.++|+.|+++|++++|+||+. ...+...++++++. |+ .++.+. +..||+|++| +
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~~~~~--~~~KP~~~~~-----~ 92 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--ID--VLYACP--HCRKPKPGMF-----L 92 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC--EE--EEEECC--CCCCCChHHH-----H
Confidence 3578999999999999999999999998 88899999999875 33 334433 5789999999 8
Q ss_pred hhhhhc-ccCCcccccC
Q 024806 247 IVCNVL-KTHAHKNVLV 262 (262)
Q Consensus 247 ~a~~~l-gv~p~e~v~I 262 (262)
.+++++ +++|++++||
T Consensus 93 ~~~~~~~~~~~~~~v~I 109 (132)
T TIGR01662 93 EALKRFNEIDPEESVYV 109 (132)
T ss_pred HHHHHcCCCChhheEEE
Confidence 889999 5999999986
No 56
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.53 E-value=5.8e-15 Score=116.91 Aligned_cols=81 Identities=11% Similarity=0.003 Sum_probs=73.4
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCC-CHHHHHHHHHHhcCC---------CCcccceEEeCCCCCCCCCChHHHhhhh
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTS-NEKAVTAIVSFLLGP---------ERAEKIQIFAGDVVPRKKPDPVKICSLT 244 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~-~~~~~~~~L~~~~l~---------~~f~~~~Iv~s~~~~~~KPdp~~~~~~~ 244 (262)
..++||+.++|+.|+++|++++|+||+ ....++..++.+++. ++|+ .++++++....||+|.++
T Consensus 44 ~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd--~iv~~~~~~~~kp~~~i~---- 117 (174)
T TIGR01685 44 VTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFD--DRIEIYKPNKAKQLEMIL---- 117 (174)
T ss_pred EEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhce--eeeeccCCchHHHHHHHH----
Confidence 679999999999999999999999999 888899999999998 9999 899998888889999988
Q ss_pred hhhhhhhc--ccCCcccccC
Q 024806 245 VDIVCNVL--KTHAHKNVLV 262 (262)
Q Consensus 245 ~~~a~~~l--gv~p~e~v~I 262 (262)
+.+.+.+ |+.|++|+||
T Consensus 118 -~~~~~~~~~gl~p~e~l~V 136 (174)
T TIGR01685 118 -QKVNKVDPSVLKPAQILFF 136 (174)
T ss_pred -HHhhhcccCCCCHHHeEEE
Confidence 6666777 8999999986
No 57
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.50 E-value=1.4e-13 Score=110.05 Aligned_cols=79 Identities=13% Similarity=0.133 Sum_probs=63.8
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCH---------------HHHHHHHHHhcCCCCcccceEEeC-----------C
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNE---------------KAVTAIVSFLLGPERAEKIQIFAG-----------D 228 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~---------------~~~~~~L~~~~l~~~f~~~~Iv~s-----------~ 228 (262)
+.++||+.++|+.|+++|++++|+||++. ..+...++.+++. |+ .++.+ +
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~--~i~~~~~~~~~~~~~~~ 100 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD--LD--GIYYCPHHPEGVEEFRQ 100 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC--cc--EEEECCCCCcccccccC
Confidence 56889999999999999999999999984 3444566666554 66 45432 3
Q ss_pred CCCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 229 VVPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 229 ~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
+.+..||+|++| ..+++++|++|++|+||
T Consensus 101 ~~~~~KP~p~~~-----~~a~~~~~~~~~~~v~V 129 (176)
T TIGR00213 101 VCDCRKPKPGML-----LQARKELHIDMAQSYMV 129 (176)
T ss_pred CCCCCCCCHHHH-----HHHHHHcCcChhhEEEE
Confidence 456789999999 88999999999999986
No 58
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.49 E-value=2.8e-13 Score=112.53 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=56.4
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCC----CHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHH
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTS----NEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKI 240 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~----~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~ 240 (262)
..+++++.++|+.|+++|++++++||. .+..++.+++.+|+.++|+ .++++++....||+|..+
T Consensus 113 s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~--~i~~~d~~~~~Kp~~~~~ 180 (237)
T TIGR01672 113 SIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNP--VIFAGDKPGQYQYTKTQW 180 (237)
T ss_pred CcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchhee--EEECCCCCCCCCCCHHHH
Confidence 456778999999999999999999998 6678889999999999998 889988888889988654
No 59
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.49 E-value=2.1e-13 Score=118.49 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=67.5
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccc-----eEEeCC---CCCCCCCChHHHhhhhhh
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKI-----QIFAGD---VVPRKKPDPVKICSLTVD 246 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~-----~Iv~s~---~~~~~KPdp~~~~~~~~~ 246 (262)
.+++||+.++|+.|++.|++++|+|++.....+.+++.+++...+... ..+++. +....||+++.+ +
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L-----~ 254 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTL-----T 254 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHH-----H
Confidence 789999999999999999999999999988899999999886644311 222332 223568999999 8
Q ss_pred hhhhhcccCCcccccC
Q 024806 247 IVCNVLKTHAHKNVLV 262 (262)
Q Consensus 247 ~a~~~lgv~p~e~v~I 262 (262)
.+++++|++|+++++|
T Consensus 255 ~la~~lgi~~~qtIaV 270 (322)
T PRK11133 255 RLAQEYEIPLAQTVAI 270 (322)
T ss_pred HHHHHcCCChhhEEEE
Confidence 8899999999999875
No 60
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.48 E-value=6.4e-13 Score=108.57 Aligned_cols=81 Identities=15% Similarity=0.104 Sum_probs=59.7
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCC---CCCCCCChHHHhhhhhhhhhhh
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV---VPRKKPDPVKICSLTVDIVCNV 251 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~---~~~~KPdp~~~~~~~~~~a~~~ 251 (262)
.+++||+.++|+.|+++ ++++|+||+....++.+++++|+..+|... +...++ .+..+|.|... ..+++.
T Consensus 67 ~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~-~~~~~~~~i~~~~~~~p~~k-----~~~l~~ 139 (205)
T PRK13582 67 LDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHS-LEVDEDGMITGYDLRQPDGK-----RQAVKA 139 (205)
T ss_pred CCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcce-EEECCCCeEECccccccchH-----HHHHHH
Confidence 67899999999999999 999999999999999999999999888632 222111 12223334333 334556
Q ss_pred cccCCcccccC
Q 024806 252 LKTHAHKNVLV 262 (262)
Q Consensus 252 lgv~p~e~v~I 262 (262)
++..+++++||
T Consensus 140 ~~~~~~~~v~i 150 (205)
T PRK13582 140 LKSLGYRVIAA 150 (205)
T ss_pred HHHhCCeEEEE
Confidence 77777888875
No 61
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.44 E-value=2.1e-12 Score=103.76 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=48.4
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGD 228 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~ 228 (262)
.+++||+.++|+.|+++|++++|+||+....++..++.+++.++|+ .|++++
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~--~i~~~~ 122 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFI--EIYSNP 122 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhhee--EEeccC
Confidence 6899999999999999999999999999999999999999999998 788654
No 62
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.37 E-value=2.3e-12 Score=97.35 Aligned_cols=81 Identities=22% Similarity=0.357 Sum_probs=71.6
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCC----------------CCChH
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK----------------KPDPV 238 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~----------------KPdp~ 238 (262)
..+++|+.++|+.|+++|++++|+||+....++..++.+++..+|+ .+++++..... ||++.
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFD--PVITSNGAAIYYPKEGLFLGGGPFDIGKPNPD 100 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhh--heeccchhhhhcccccccccccccccCCCCHH
Confidence 6789999999999999999999999999999999999999988888 78877765544 99999
Q ss_pred HHhhhhhhhhhhhcccCCcccccC
Q 024806 239 KICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 239 ~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
.+ ..+.+.++..++++++|
T Consensus 101 ~~-----~~~~~~~~~~~~~~~~i 119 (139)
T cd01427 101 KL-----LAALKLLGVDPEEVLMV 119 (139)
T ss_pred HH-----HHHHHHcCCChhhEEEe
Confidence 99 77888888888888765
No 63
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.35 E-value=8e-12 Score=102.98 Aligned_cols=88 Identities=14% Similarity=0.171 Sum_probs=65.6
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcc-cceEEeCCCCCCCCCChHHHhh-----hhhhhh
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE-KIQIFAGDVVPRKKPDPVKICS-----LTVDIV 248 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~-~~~Iv~s~~~~~~KPdp~~~~~-----~~~~~a 248 (262)
.+++||+.++|+.|+++|++++|+|++....++.+++.++..+++. ...++.++.....||+|..+.. .--..+
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~ 148 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSL 148 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHH
Confidence 6899999999999999999999999999999999999875444441 1145566666778899887620 000245
Q ss_pred hhhcccCCcccccC
Q 024806 249 CNVLKTHAHKNVLV 262 (262)
Q Consensus 249 ~~~lgv~p~e~v~I 262 (262)
++.++..+++++||
T Consensus 149 l~~~~~~~~~~i~i 162 (214)
T TIGR03333 149 IRKLSEPNDYHIVI 162 (214)
T ss_pred HHHHhhcCCcEEEE
Confidence 66677778888775
No 64
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.31 E-value=1.8e-11 Score=99.70 Aligned_cols=82 Identities=11% Similarity=0.021 Sum_probs=61.7
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCC-C---------CCCCCChHHHhhhh
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV-V---------PRKKPDPVKICSLT 244 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~-~---------~~~KPdp~~~~~~~ 244 (262)
..++||+.++|+.++++|++++|+|++....++.+++.+|+..+|... +...++ . ..++++...+
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~-l~~~~~g~~~g~~~~~~~~g~~K~~~l---- 160 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTR-LEESEDGIYTGNIDGNNCKGEGKVHAL---- 160 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecc-eEEcCCCEEeCCccCCCCCChHHHHHH----
Confidence 468999999999999999999999999999999999999998888632 232121 1 1123333444
Q ss_pred hhhhhhhcccCCcccccC
Q 024806 245 VDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 245 ~~~a~~~lgv~p~e~v~I 262 (262)
+..++..|++++++++|
T Consensus 161 -~~~~~~~~~~~~~~~~~ 177 (202)
T TIGR01490 161 -AELLAEEQIDLKDSYAY 177 (202)
T ss_pred -HHHHHHcCCCHHHcEee
Confidence 66677889888888764
No 65
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.28 E-value=8.6e-12 Score=98.01 Aligned_cols=79 Identities=11% Similarity=0.114 Sum_probs=68.8
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCC---------------HHHHHHHHHHhcCCCCcccceE-Ee----CCCCCCCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN---------------EKAVTAIVSFLLGPERAEKIQI-FA----GDVVPRKK 234 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~---------------~~~~~~~L~~~~l~~~f~~~~I-v~----s~~~~~~K 234 (262)
+.++||+.++|+.|+++|++++|+||.+ ...+..+++.+|+. |+ .+ ++ +++.+..|
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--fd--~ii~~~~~~~~~~~~~K 103 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--FD--DVLICPHFPDDNCDCRK 103 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--ee--EEEECCCCCCCCCCCCC
Confidence 5789999999999999999999999973 55778889999886 76 45 44 57888999
Q ss_pred CChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 235 PDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 235 Pdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
|+|++| +.+++++|++|++|+||
T Consensus 104 P~~~~~-----~~~~~~~~~~~~e~l~I 126 (161)
T TIGR01261 104 PKIKLL-----EPYLKKNLIDKARSYVI 126 (161)
T ss_pred CCHHHH-----HHHHHHcCCCHHHeEEE
Confidence 999999 88899999999999986
No 66
>PRK11590 hypothetical protein; Provisional
Probab=99.25 E-value=8.9e-11 Score=96.54 Aligned_cols=127 Identities=17% Similarity=0.064 Sum_probs=73.9
Q ss_pred CCcEEEEecCccccccCcchHHHHHHHHH-HHccCCCCCCHHHHHHHHHhCCCHHHHHHHH--H--hcCCCCCCCCcHHH
Q 024806 76 LPSALLFDCDGVLVDTEKDGHRISFNDTF-KEKELGVTWDVDLYGELLKIGGGKERMTAYF--N--KTGWPEKAPSDEEE 150 (262)
Q Consensus 76 ~ik~viFD~DGTL~d~~~~~~~~a~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~ 150 (262)
..|++|||+||||++.. ...+|...+ +++|+... ..+..... +|.+........ . ..-|....+..++.
T Consensus 5 ~~k~~iFD~DGTL~~~d---~~~~~~~~~~~~~g~~~~-~~~~~~~~--ig~~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 78 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD---MFGSFLRYLLRRQPLNLL-LVLPLLPV--IGLGLLVKGRAARWPMSLLLWGCTFGHSEAR 78 (211)
T ss_pred cceEEEEecCCCCcccc---hHHHHHHHHHHhcchhhH-HHhHHHHH--hccCcccchhhhhhhHHHHHHHHHcCCCHHH
Confidence 45799999999999433 345677766 77776532 22333333 333322211110 0 00000000112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHH-HHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC
Q 024806 151 RKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLI-DQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (262)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L-~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~ 217 (262)
.+++.+.+ .+.|.+ ...++||+.++| +.|+++|++++|+||+.+..++.+++.+|+..
T Consensus 79 ~~~~~~~f----~~~~~~-----~~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~ 137 (211)
T PRK11590 79 LQALEADF----VRWFRD-----NVTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLP 137 (211)
T ss_pred HHHHHHHH----HHHHHH-----hCcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccc
Confidence 23333332 222322 146799999999 67888999999999999999999999987643
No 67
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.25 E-value=8.2e-11 Score=94.00 Aligned_cols=160 Identities=14% Similarity=0.092 Sum_probs=101.9
Q ss_pred CCCcEEEEecCccccccCcchHHHHHH----HH-HHHccCCCCCCHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCcHH
Q 024806 75 VLPSALLFDCDGVLVDTEKDGHRISFN----DT-FKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEE 149 (262)
Q Consensus 75 ~~ik~viFD~DGTL~d~~~~~~~~a~~----~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (262)
+.++.++||+|+||+..... ...+.+ +. .+++|+...........++...+ ...+-+...|...
T Consensus 13 ~~~~~l~FDiDdtLYp~St~-i~~~~~~nI~~f~~eklgi~~e~a~~L~~~~yk~YG---~t~aGL~~~~~~~------- 81 (244)
T KOG3109|consen 13 PNYKCLFFDIDDTLYPLSTG-IQLMMRNNIQEFFVEKLGISEEEAEELRESLYKEYG---LTMAGLKAVGYIF------- 81 (244)
T ss_pred ccceEEEEecccccccCchh-HHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHHh---HHHHHHHHhcccC-------
Confidence 36899999999999987764 444444 33 33467765422222222211111 1122222222110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCC
Q 024806 150 ERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV 229 (262)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~ 229 (262)
+ ..++.+.+.+ ...-..+.+.+...++|-.|++++ ..+.||+.+..+.++|+.+|+.+.|+ .|++-+-
T Consensus 82 d----~deY~~~V~~----~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFe--gii~~e~ 149 (244)
T KOG3109|consen 82 D----ADEYHRFVHG----RLPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFE--GIICFET 149 (244)
T ss_pred C----HHHHHHHhhc----cCcHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHHhcc--ceeEeec
Confidence 0 1122221111 111113778888999999998875 77899999999999999999999999 6666543
Q ss_pred CC------CCCCChHHHhhhhhhhhhhhcccC-CcccccC
Q 024806 230 VP------RKKPDPVKICSLTVDIVCNVLKTH-AHKNVLV 262 (262)
Q Consensus 230 ~~------~~KPdp~~~~~~~~~~a~~~lgv~-p~e~v~I 262 (262)
.. .-||++..| +.+.+..|+. |..++|+
T Consensus 150 ~np~~~~~vcKP~~~af-----E~a~k~agi~~p~~t~Ff 184 (244)
T KOG3109|consen 150 LNPIEKTVVCKPSEEAF-----EKAMKVAGIDSPRNTYFF 184 (244)
T ss_pred cCCCCCceeecCCHHHH-----HHHHHHhCCCCcCceEEE
Confidence 32 459999999 8899999998 9888874
No 68
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.24 E-value=1.7e-11 Score=107.06 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=67.7
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH----hcCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhh
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF----LLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNV 251 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~----~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~ 251 (262)
.+++|+.++|+.|+++|++++|+||++...+..+++. +++.++|+ .+..+ +||+|+.+ ..+++.
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~--~~~~~-----~~pk~~~i-----~~~~~~ 98 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFD--ARSIN-----WGPKSESL-----RKIAKK 98 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHee--EEEEe-----cCchHHHH-----HHHHHH
Confidence 3579999999999999999999999999999999999 89999998 55443 68999999 888999
Q ss_pred cccCCcccccC
Q 024806 252 LKTHAHKNVLV 262 (262)
Q Consensus 252 lgv~p~e~v~I 262 (262)
+|+.|+++|||
T Consensus 99 l~i~~~~~vfi 109 (320)
T TIGR01686 99 LNLGTDSFLFI 109 (320)
T ss_pred hCCCcCcEEEE
Confidence 99999999986
No 69
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.24 E-value=9.1e-11 Score=93.42 Aligned_cols=81 Identities=19% Similarity=0.151 Sum_probs=60.4
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCC-C---CCC--CCCC------hHHHhh
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGD-V---VPR--KKPD------PVKICS 242 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~-~---~~~--~KPd------p~~~~~ 242 (262)
+.++||+.++|+.|+++|++++|+|++....++.+++.+|+..+|.. .+..+ + .+. .||. +..+
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~--~~~~~~~g~~~g~~~~~~~~~~~~K~~~l-- 147 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFAN--RLEFDDNGLLTGPIEGQVNPEGECKGKVL-- 147 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheee--eEEECCCCEEeCccCCcccCCcchHHHHH--
Confidence 67899999999999999999999999999999999999999887763 22221 1 110 1122 2333
Q ss_pred hhhhhhhhhcccCCcccccC
Q 024806 243 LTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 243 ~~~~~a~~~lgv~p~e~v~I 262 (262)
+..++.+|+.++++++|
T Consensus 148 ---~~~~~~~~~~~~~~~~i 164 (177)
T TIGR01488 148 ---KELLEESKITLKKIIAV 164 (177)
T ss_pred ---HHHHHHhCCCHHHEEEE
Confidence 55677888888888775
No 70
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.24 E-value=4.5e-11 Score=100.82 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=56.7
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHH
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKI 240 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~ 240 (262)
||+.++|+.|+++|+++||+||+.+..+...++.+|+..+|+ .|++++++...||+|+..
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFd--vIIs~Gdv~~~kp~~e~~ 208 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFD--IIISGGHKAEEYSTMSTE 208 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccC--EEEECCccccCCCCcccc
Confidence 889999999999999999999999999999999999999999 899999999999999743
No 71
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.23 E-value=8.5e-12 Score=94.42 Aligned_cols=75 Identities=11% Similarity=0.126 Sum_probs=67.3
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCC-CHHHHHHHHHHhc-------CCCCcccceEEeCCCCCCCCCChHHHhhhhhhhh
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTS-NEKAVTAIVSFLL-------GPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIV 248 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~-~~~~~~~~L~~~~-------l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a 248 (262)
++||+.++|+.|+++|++++|+||+ ....+...++.++ +.++|+ .++++++ ||+|++| ..+
T Consensus 30 ~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~--~~~~~~~----~pkp~~~-----~~a 98 (128)
T TIGR01681 30 TIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFD--PLTIGYW----LPKSPRL-----VEI 98 (128)
T ss_pred HHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhh--hhhhcCC----CcHHHHH-----HHH
Confidence 6799999999999999999999999 8888888899888 789998 7777754 5889999 788
Q ss_pred hhhcc--cCCcccccC
Q 024806 249 CNVLK--THAHKNVLV 262 (262)
Q Consensus 249 ~~~lg--v~p~e~v~I 262 (262)
++++| +.|++|+||
T Consensus 99 ~~~lg~~~~p~~~l~i 114 (128)
T TIGR01681 99 ALKLNGVLKPKSILFV 114 (128)
T ss_pred HHHhcCCCCcceEEEE
Confidence 99999 999999986
No 72
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.22 E-value=1.3e-11 Score=101.05 Aligned_cols=76 Identities=29% Similarity=0.401 Sum_probs=64.8
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhccc
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLKT 254 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lgv 254 (262)
.+++||+.++|+.|+++|++++++|+.+...+..+.+.+|+.+ .++.++.. .||++++| ..+++.|++
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~-----~~v~a~~~--~kP~~k~~-----~~~i~~l~~ 193 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD-----SIVFARVI--GKPEPKIF-----LRIIKELQV 193 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS-----EEEEESHE--TTTHHHHH-----HHHHHHHTC
T ss_pred CcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc-----cccccccc--ccccchhH-----HHHHHHHhc
Confidence 4678999999999999999999999999999999999998833 23333322 79999999 788999999
Q ss_pred CCcccccC
Q 024806 255 HAHKNVLV 262 (262)
Q Consensus 255 ~p~e~v~I 262 (262)
++++++||
T Consensus 194 ~~~~v~~v 201 (215)
T PF00702_consen 194 KPGEVAMV 201 (215)
T ss_dssp TGGGEEEE
T ss_pred CCCEEEEE
Confidence 99999886
No 73
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.18 E-value=8e-11 Score=103.17 Aligned_cols=79 Identities=13% Similarity=0.161 Sum_probs=65.8
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCC---------------CHHHHHHHHHHhcCCCCcccceEE-e----CCCCCCCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTS---------------NEKAVTAIVSFLLGPERAEKIQIF-A----GDVVPRKK 234 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~---------------~~~~~~~~L~~~~l~~~f~~~~Iv-~----s~~~~~~K 234 (262)
..++||+.++|+.|+++|++++|+||. ....+..+++.+++. |+ .++ + +++.+.+|
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~--fd--~i~i~~~~~sd~~~~rK 104 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIK--FD--EVLICPHFPEDNCSCRK 104 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCc--ee--eEEEeCCcCcccCCCCC
Confidence 568999999999999999999999995 345677788888773 66 444 3 35677899
Q ss_pred CChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 235 PDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 235 Pdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
|+|.+| ..+++.++++|++++||
T Consensus 105 P~p~~l-----~~a~~~l~v~~~~svmI 127 (354)
T PRK05446 105 PKTGLV-----EEYLAEGAIDLANSYVI 127 (354)
T ss_pred CCHHHH-----HHHHHHcCCCcccEEEE
Confidence 999999 77888999999999986
No 74
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.18 E-value=1.2e-10 Score=106.88 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=66.4
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCH------------HHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHHhhhh
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNE------------KAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLT 244 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~------------~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~ 244 (262)
++||+.+.|+.|++.|++++|+||... ..+..+++.+|+. |+ .+++.++...+||+|.++
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip--fd--viia~~~~~~RKP~pGm~---- 269 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP--FQ--VFIAIGAGFYRKPLTGMW---- 269 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc--eE--EEEeCCCCCCCCCCHHHH----
Confidence 689999999999999999999999876 4578889999874 77 778877778899999999
Q ss_pred hhhhhhhc----ccCCcccccC
Q 024806 245 VDIVCNVL----KTHAHKNVLV 262 (262)
Q Consensus 245 ~~~a~~~l----gv~p~e~v~I 262 (262)
..+++.+ ++++++++||
T Consensus 270 -~~a~~~~~~~~~Id~~~S~~V 290 (526)
T TIGR01663 270 -DHLKEEANDGTEIQEDDCFFV 290 (526)
T ss_pred -HHHHHhcCcccCCCHHHeEEe
Confidence 6777777 4899999987
No 75
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.16 E-value=4.1e-10 Score=92.44 Aligned_cols=84 Identities=19% Similarity=0.065 Sum_probs=62.7
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCC-------CCCCCCChHHHhhhhhhh
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV-------VPRKKPDPVKICSLTVDI 247 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~-------~~~~KPdp~~~~~~~~~~ 247 (262)
..++||+.++++.|+++|++++|+|++....++.+.+.+|+...+.. ....++ .+..-... -....++.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an--~l~~~dG~ltG~v~g~~~~~~--~K~~~l~~ 151 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVAN--ELEIDDGKLTGRVVGPICDGE--GKAKALRE 151 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheee--EEEEeCCEEeceeeeeecCcc--hHHHHHHH
Confidence 68999999999999999999999999999999999999999988873 333333 11111100 11223367
Q ss_pred hhhhcccCCcccccC
Q 024806 248 VCNVLKTHAHKNVLV 262 (262)
Q Consensus 248 a~~~lgv~p~e~v~I 262 (262)
.++.+|+++++++.+
T Consensus 152 ~~~~~g~~~~~~~a~ 166 (212)
T COG0560 152 LAAELGIPLEETVAY 166 (212)
T ss_pred HHHHcCCCHHHeEEE
Confidence 788899988888754
No 76
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.14 E-value=8.7e-11 Score=91.16 Aligned_cols=77 Identities=13% Similarity=0.122 Sum_probs=69.4
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC-CcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhcc
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE-RAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLK 253 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~-~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lg 253 (262)
..++||+.++|+.|+ ++++++|+||+.+..++.+++++++.. +|+ .|++++++...||+ | ..+++++|
T Consensus 44 v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~--~i~~~~d~~~~KP~---~-----~k~l~~l~ 112 (148)
T smart00577 44 VKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGY--RRLFRDECVFVKGK---Y-----VKDLSLLG 112 (148)
T ss_pred EEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEee--eEEECccccccCCe---E-----eecHHHcC
Confidence 578999999999998 579999999999999999999998865 457 89999999999997 6 66889999
Q ss_pred cCCcccccC
Q 024806 254 THAHKNVLV 262 (262)
Q Consensus 254 v~p~e~v~I 262 (262)
++|++||||
T Consensus 113 ~~p~~~i~i 121 (148)
T smart00577 113 RDLSNVIII 121 (148)
T ss_pred CChhcEEEE
Confidence 999999986
No 77
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.14 E-value=6e-10 Score=90.92 Aligned_cols=64 Identities=17% Similarity=0.083 Sum_probs=50.2
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEE------eCCCCCCCCCChHHH
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIF------AGDVVPRKKPDPVKI 240 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv------~s~~~~~~KPdp~~~ 240 (262)
++++||+.++|+.|++.| +++|+|++....++.+++.+|+..+|.....+ ++... ..||++..+
T Consensus 67 i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~-~~~~~K~~~ 136 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQL-RQKDPKRQS 136 (203)
T ss_pred CCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCeeECeee-cCcchHHHH
Confidence 689999999999999985 99999999999999999999999888642222 22211 456666665
No 78
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.11 E-value=2.6e-11 Score=95.85 Aligned_cols=63 Identities=16% Similarity=0.032 Sum_probs=55.9
Q ss_pred HHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 184 LIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 184 ~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
-++.|+++|++++|+||.+...++..++.+|+.++|+ .+ ||+|++| +.+++++|++|+++++|
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~--~~---------kpkp~~~-----~~~~~~l~~~~~ev~~i 104 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHE--GI---------KKKTEPY-----AQMLEEMNISDAEVCYV 104 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEe--cC---------CCCHHHH-----HHHHHHcCcCHHHEEEE
Confidence 3567788999999999999999999999999998886 22 7999999 88899999999999886
No 79
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.08 E-value=5.7e-10 Score=85.70 Aligned_cols=68 Identities=24% Similarity=0.232 Sum_probs=57.7
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhcccCCcc
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLKTHAHK 258 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e 258 (262)
|.+.+.+..++++|+++.|+||+.+..+....+.+|+. |. .+..||.+..| +.|++.++++|++
T Consensus 49 pe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~-fi----------~~A~KP~~~~f-----r~Al~~m~l~~~~ 112 (175)
T COG2179 49 PELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP-FI----------YRAKKPFGRAF-----RRALKEMNLPPEE 112 (175)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCc-ee----------ecccCccHHHH-----HHHHHHcCCChhH
Confidence 44456667888999999999999999999999998652 22 25689999999 9999999999999
Q ss_pred cccC
Q 024806 259 NVLV 262 (262)
Q Consensus 259 ~v~I 262 (262)
|+||
T Consensus 113 vvmV 116 (175)
T COG2179 113 VVMV 116 (175)
T ss_pred EEEE
Confidence 9997
No 80
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.07 E-value=8.1e-11 Score=91.94 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=56.4
Q ss_pred HHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 184 LIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 184 ~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
+|+.|+++|++++|+||.+...+...++.+|+.++|+ . .||+|+++ ..+++.+|+.|++|+||
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~--~---------~~~k~~~~-----~~~~~~~~~~~~~~~~v 98 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQ--G---------QSNKLIAF-----SDILEKLALAPENVAYI 98 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEe--c---------ccchHHHH-----HHHHHHcCCCHHHEEEE
Confidence 7889999999999999999999999999999888876 2 27889999 78899999999999886
No 81
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.03 E-value=2.5e-10 Score=97.85 Aligned_cols=78 Identities=10% Similarity=0.060 Sum_probs=58.9
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHHHH-HHHHHHhcCCCCcccceEE---eCCCCCCCCCChHHHhhhhhhhhhhhc
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAV-TAIVSFLLGPERAEKIQIF---AGDVVPRKKPDPVKICSLTVDIVCNVL 252 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~-~~~L~~~~l~~~f~~~~Iv---~s~~~~~~KPdp~~~~~~~~~~a~~~l 252 (262)
.|+|+.++++.|+++|+ ++|+||.+.... ...+...+...+|+ .+. ..+....+||+|.+| +.+++++
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~--~i~~~~g~~~~~~gKP~p~~~-----~~~~~~~ 215 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVA--AIETASGRQPLVVGKPSPYMF-----ECITENF 215 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHH--HHHHHhCCceeccCCCCHHHH-----HHHHHHh
Confidence 48899999999998887 789999985433 12233445556666 343 234456789999999 8889999
Q ss_pred ccCCcccccC
Q 024806 253 KTHAHKNVLV 262 (262)
Q Consensus 253 gv~p~e~v~I 262 (262)
|++|++++||
T Consensus 216 ~~~~~~~lmI 225 (279)
T TIGR01452 216 SIDPARTLMV 225 (279)
T ss_pred CCChhhEEEE
Confidence 9999999997
No 82
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.02 E-value=1.5e-09 Score=90.29 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=51.6
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCC----CHHHHHHHHHHhcC--CCCcccceEEeCCCCCCCCCChHHH
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTS----NEKAVTAIVSFLLG--PERAEKIQIFAGDVVPRKKPDPVKI 240 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~----~~~~~~~~L~~~~l--~~~f~~~~Iv~s~~~~~~KPdp~~~ 240 (262)
..++||+.++|+.|+++|++++++||. ....++.+++.+|+ .++|+ .++++++. .||++...
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~--vil~gd~~--~K~~K~~~ 180 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNP--VIFAGDKP--GQYTKTQW 180 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCccccee--EEEcCCCC--CCCCHHHH
Confidence 678999999999999999999999995 35577777778999 88998 78887763 78887654
No 83
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.01 E-value=1.2e-08 Score=86.34 Aligned_cols=89 Identities=11% Similarity=0.112 Sum_probs=71.9
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceE------EeCCCCCCCCCCh---
Q 024806 167 MVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQI------FAGDVVPRKKPDP--- 237 (262)
Q Consensus 167 ~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~I------v~s~~~~~~KPdp--- 237 (262)
.+.+.+..+.+.||+.++++.|+++|++++|+|++....++.+|+++|+.+.+. .| +..+.+-.+||+|
T Consensus 112 ~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~--~IvSN~L~f~~dGvltG~~~P~i~ 189 (277)
T TIGR01544 112 KEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNV--KVVSNFMDFDEDGVLKGFKGPLIH 189 (277)
T ss_pred HHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCc--eEEeeeEEECCCCeEeCCCCCccc
Confidence 333433458999999999999999999999999999999999999998877776 56 5555555678998
Q ss_pred ------HHHhhhhhhhhhhhcc--cCCcccccC
Q 024806 238 ------VKICSLTVDIVCNVLK--THAHKNVLV 262 (262)
Q Consensus 238 ------~~~~~~~~~~a~~~lg--v~p~e~v~I 262 (262)
.++ ..+++.++ ..++++|+|
T Consensus 190 ~~~K~~~v~-----~~~~~~~~~~~~~~~vI~v 217 (277)
T TIGR01544 190 TFNKNHDVA-----LRNTEYFNQLKDRSNIILL 217 (277)
T ss_pred ccccHHHHH-----HHHHHHhCccCCcceEEEE
Confidence 555 56788888 788888875
No 84
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=98.98 E-value=2.7e-10 Score=96.50 Aligned_cols=79 Identities=6% Similarity=-0.124 Sum_probs=65.8
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCC---CCCCChHHHhhhhhhhhhhhcc
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP---RKKPDPVKICSLTVDIVCNVLK 253 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~---~~KPdp~~~~~~~~~~a~~~lg 253 (262)
.|+++.+.++.|++.|++++|+||.+.......+..+|+..+|+ .+..+.... ..||+|++| +.+++++|
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g~~~~--~i~~~~~~~~~~~gKP~p~~~-----~~~~~~~~ 193 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVGPFVT--ALEYATDTKATVVGKPSKTFF-----LEALRATG 193 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCchHHHH--HHHHHhCCCceeecCCCHHHH-----HHHHHHhC
Confidence 46889999999999999999999998777766777778888887 666554433 379999999 88899999
Q ss_pred cCCcccccC
Q 024806 254 THAHKNVLV 262 (262)
Q Consensus 254 v~p~e~v~I 262 (262)
++|++++||
T Consensus 194 ~~~~~~~~v 202 (257)
T TIGR01458 194 CEPEEAVMI 202 (257)
T ss_pred CChhhEEEE
Confidence 999999986
No 85
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=98.94 E-value=8.7e-09 Score=85.28 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=47.8
Q ss_pred CCCCCccHHHHHHHH--HHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeC
Q 024806 174 LLPLRPGVAKLIDQA--LEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAG 227 (262)
Q Consensus 174 ~~~~~pgv~e~L~~L--~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s 227 (262)
.+++.||+.++++.+ .+.|+.+.|+|++..-+++.+|++.|+.+.|+ .|++.
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~--~I~TN 122 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFS--EIFTN 122 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccc--eEEeC
Confidence 389999999999999 45799999999999999999999999999998 67775
No 86
>PRK08238 hypothetical protein; Validated
Probab=98.93 E-value=3e-08 Score=90.75 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=55.4
Q ss_pred CCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHH
Q 024806 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKI 240 (262)
Q Consensus 174 ~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~ 240 (262)
..+.+||+.++|+.++++|++++|+||+++..++.+++++|+ |+ .++++++....||+++..
T Consensus 70 ~lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl---Fd--~Vigsd~~~~~kg~~K~~ 131 (479)
T PRK08238 70 TLPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL---FD--GVFASDGTTNLKGAAKAA 131 (479)
T ss_pred hCCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC---CC--EEEeCCCccccCCchHHH
Confidence 367889999999999999999999999999999999999976 88 899999887888877653
No 87
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.89 E-value=6.4e-08 Score=79.44 Aligned_cols=46 Identities=15% Similarity=-0.016 Sum_probs=39.0
Q ss_pred CCCCccHHHHHH-HHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcc
Q 024806 175 LPLRPGVAKLID-QALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (262)
Q Consensus 175 ~~~~pgv~e~L~-~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~ 220 (262)
..++||+.++|+ .++++|++++|+||+....++.+.+..++....+
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~ 139 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLN 139 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCc
Confidence 367999999996 8888999999999999999999998866655443
No 88
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.87 E-value=9.1e-09 Score=87.05 Aligned_cols=51 Identities=20% Similarity=0.148 Sum_probs=47.0
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCC
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP 231 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~ 231 (262)
||+.++|+.|+++|++++|+||+++..+...++.+|+.++|+ .|+++++..
T Consensus 151 p~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFD--vII~~g~i~ 201 (303)
T PHA03398 151 PFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFD--IIICGGRKA 201 (303)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCcccc--EEEECCCcc
Confidence 888899999999999999999999999999999999999999 788887643
No 89
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=98.85 E-value=5.8e-09 Score=82.82 Aligned_cols=72 Identities=17% Similarity=0.142 Sum_probs=59.9
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCC-HHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhcc
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN-EKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLK 253 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~-~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lg 253 (262)
..++||+.++|+.|+++|++++|+||++ ...+..+++.+++..+ .+..||+|++| ..+++++|
T Consensus 42 ~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~-----------~~~~KP~p~~~-----~~~l~~~~ 105 (170)
T TIGR01668 42 NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVL-----------PHAVKPPGCAF-----RRAHPEMG 105 (170)
T ss_pred CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEE-----------cCCCCCChHHH-----HHHHHHcC
Confidence 4678999999999999999999999998 5777777776654321 13469999999 88899999
Q ss_pred cCCcccccC
Q 024806 254 THAHKNVLV 262 (262)
Q Consensus 254 v~p~e~v~I 262 (262)
++|++++||
T Consensus 106 ~~~~~~l~I 114 (170)
T TIGR01668 106 LTSEQVAVV 114 (170)
T ss_pred CCHHHEEEE
Confidence 999999986
No 90
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.85 E-value=4.9e-09 Score=90.73 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=72.3
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC-CcccceEEeCC-------CCCCCCCChHHHhhhhhh
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE-RAEKIQIFAGD-------VVPRKKPDPVKICSLTVD 246 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~-~f~~~~Iv~s~-------~~~~~KPdp~~~~~~~~~ 246 (262)
..++||+.++|+.|+++|++++++||.+....+..++.+++.+ +|+ .+++.+ +.+..||+|+++ .
T Consensus 186 ~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~--~i~~~~~~~~~~~~~~~~kp~p~~~-----~ 258 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFD--DLIGRPPDMHFQREQGDKRPDDVVK-----E 258 (300)
T ss_pred CCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchh--hhhCCcchhhhcccCCCCCCcHHHH-----H
Confidence 4689999999999999999999999999999999999999997 998 788877 456789999999 7
Q ss_pred hhhhhccc-CCcccccC
Q 024806 247 IVCNVLKT-HAHKNVLV 262 (262)
Q Consensus 247 ~a~~~lgv-~p~e~v~I 262 (262)
.++++++. .|++|+||
T Consensus 259 ~~l~~~~~~~~~~~~~v 275 (300)
T PHA02530 259 EIFWEKIAPKYDVLLAV 275 (300)
T ss_pred HHHHHHhccCceEEEEE
Confidence 78888888 57999886
No 91
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=98.81 E-value=2e-07 Score=81.38 Aligned_cols=86 Identities=10% Similarity=0.054 Sum_probs=66.8
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh-c-------CCCCcccceEEeCCCC----------------
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL-L-------GPERAEKIQIFAGDVV---------------- 230 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~-~-------l~~~f~~~~Iv~s~~~---------------- 230 (262)
+...||+.++|+.|+++|++++|+||++...++..++.+ | +.++|| .|+++..-
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD--~IIt~a~KP~FF~~~~pf~~v~~~ 260 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFD--VVIVDARKPGFFTEGRPFRQVDVE 260 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCc--EEEeCCCCCcccCCCCceEEEeCC
Confidence 667999999999999999999999999999999999997 6 889999 78876641
Q ss_pred -CCCCCCh-------HHHhhhhhhhhhhhcccCCcccccC
Q 024806 231 -PRKKPDP-------VKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 231 -~~~KPdp-------~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
+..++.. .+|..=.+....+.+|+.+++++||
T Consensus 261 ~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYv 300 (343)
T TIGR02244 261 TGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYF 300 (343)
T ss_pred CCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEE
Confidence 1122222 2444334466778888888888875
No 92
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.71 E-value=1.7e-08 Score=79.51 Aligned_cols=77 Identities=18% Similarity=0.292 Sum_probs=51.0
Q ss_pred CCCCCccHHHHHHHHHHCCCeEEEEeC-CCHHHHHHHHHHhcCC----------CCcccceEEeCCCCCCCCCChHHHhh
Q 024806 174 LLPLRPGVAKLIDQALEKGVKVAVCST-SNEKAVTAIVSFLLGP----------ERAEKIQIFAGDVVPRKKPDPVKICS 242 (262)
Q Consensus 174 ~~~~~pgv~e~L~~L~~~G~~l~IvTn-~~~~~~~~~L~~~~l~----------~~f~~~~Iv~s~~~~~~KPdp~~~~~ 242 (262)
.+.+||++.++|+.|+++|++++++|- ...+.+..+|+.+++. ++|+...|..+ ....-|
T Consensus 43 ~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g-------sK~~Hf-- 113 (169)
T PF12689_consen 43 EVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG-------SKTTHF-- 113 (169)
T ss_dssp EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS--------HHHHH--
T ss_pred EEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecC-------chHHHH--
Confidence 378999999999999999999999994 4567999999999999 88884222221 334556
Q ss_pred hhhhhhhhhcccCCcccccC
Q 024806 243 LTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 243 ~~~~~a~~~lgv~p~e~v~I 262 (262)
+.+.+..|++.++.+|+
T Consensus 114 ---~~i~~~tgI~y~eMlFF 130 (169)
T PF12689_consen 114 ---RRIHRKTGIPYEEMLFF 130 (169)
T ss_dssp ---HHHHHHH---GGGEEEE
T ss_pred ---HHHHHhcCCChhHEEEe
Confidence 66778999988887763
No 93
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.68 E-value=2.8e-07 Score=77.96 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=46.7
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCH---HHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHH
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNE---KAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKI 240 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~---~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~ 240 (262)
..++||+.++|+.|+++|++++++||... ......|+.+|+..++.. .++..++ + +|.+.-+
T Consensus 117 a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d-~lllr~~-~--~~K~~rr 181 (266)
T TIGR01533 117 AKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEE-HLLLKKD-K--SSKESRR 181 (266)
T ss_pred CCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcc-eEEeCCC-C--CCcHHHH
Confidence 67899999999999999999999999874 445578888888765532 5666653 3 3444555
No 94
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.65 E-value=4.9e-08 Score=78.33 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=47.6
Q ss_pred CCCCccHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeC
Q 024806 175 LPLRPGVAKLIDQALEKGV-KVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAG 227 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~-~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s 227 (262)
++..||+.++++.+++.|. .+.|+|+.+.-+++.+|+++++.+.|. .|++.
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~--~IfTN 134 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFS--EIFTN 134 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHH--HHhcC
Confidence 8999999999999999985 999999999999999999999999999 67764
No 95
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=98.57 E-value=4.3e-08 Score=82.66 Aligned_cols=78 Identities=14% Similarity=-0.001 Sum_probs=51.5
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHH--H-HHHhcCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhc
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTA--I-VSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVL 252 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~--~-L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~l 252 (262)
..|+.+.+.+..|+ +|.+ .|+||.+...... . ...-.+...++ ...+.+.+...||+|++| +.+++.+
T Consensus 121 ~~y~~l~~a~~~l~-~g~~-~i~tN~D~~~~~~~~~~~~~G~~~~~i~--~~~~~~~~~~gKP~~~~~-----~~~~~~~ 191 (249)
T TIGR01457 121 IDYEKFATATLAIR-KGAH-FIGTNGDLAIPTERGLLPGNGSLITVLE--VATGVKPVYIGKPNAIIM-----EKAVEHL 191 (249)
T ss_pred CCHHHHHHHHHHHH-CCCe-EEEECCCCCCCCCCCCCCCcHHHHHHHH--HHhCCCccccCCChHHHH-----HHHHHHc
Confidence 34566666777774 5777 7889987543311 0 01111122233 345556667789999999 8899999
Q ss_pred ccCCcccccC
Q 024806 253 KTHAHKNVLV 262 (262)
Q Consensus 253 gv~p~e~v~I 262 (262)
|++|++++||
T Consensus 192 ~~~~~~~~~V 201 (249)
T TIGR01457 192 GTEREETLMV 201 (249)
T ss_pred CCCcccEEEE
Confidence 9999999986
No 96
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=98.51 E-value=8.7e-07 Score=69.16 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=59.7
Q ss_pred CCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh---cCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhh
Q 024806 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL---LGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCN 250 (262)
Q Consensus 174 ~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~---~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~ 250 (262)
..++||++.+.|++.+++|++++|.|.++...+.....+- .+..+|+ ..+.- .. -.|-...-| ..++.
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfs--GyfDt-ti-G~KrE~~SY-----~kIa~ 171 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFS--GYFDT-TI-GKKRESQSY-----AKIAG 171 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhc--ceeec-cc-cccccchhH-----HHHHH
Confidence 3689999999999999999999999999988777766542 3333444 22222 22 256777888 77788
Q ss_pred hcccCCcccccC
Q 024806 251 VLKTHAHKNVLV 262 (262)
Q Consensus 251 ~lgv~p~e~v~I 262 (262)
..|+.|.|.+|+
T Consensus 172 ~iGl~p~eilFL 183 (229)
T COG4229 172 DIGLPPAEILFL 183 (229)
T ss_pred hcCCCchheEEe
Confidence 899999988764
No 97
>PLN02645 phosphoglycolate phosphatase
Probab=98.51 E-value=9.3e-08 Score=83.24 Aligned_cols=74 Identities=11% Similarity=0.028 Sum_probs=52.1
Q ss_pred HHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHhcCCCCcccceEEeCCCCC---CCCCChHHHhhhhhhhhhhhcccCCc
Q 024806 182 AKLIDQALEKGVKVAVCSTSNEKA-VTAIVSFLLGPERAEKIQIFAGDVVP---RKKPDPVKICSLTVDIVCNVLKTHAH 257 (262)
Q Consensus 182 ~e~L~~L~~~G~~l~IvTn~~~~~-~~~~L~~~~l~~~f~~~~Iv~s~~~~---~~KPdp~~~~~~~~~~a~~~lgv~p~ 257 (262)
......|+.++-.++|+||.+... ....+...|...+|+ .+.++.... .+||+|.+| +.+++++|++++
T Consensus 176 ~~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~--~i~~~~~~~~~~~gKP~p~~~-----~~a~~~~~~~~~ 248 (311)
T PLN02645 176 QYATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVG--AIKGSTEREPLVVGKPSTFMM-----DYLANKFGIEKS 248 (311)
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHH--HHHHHhCCCcccCCCChHHHH-----HHHHHHcCCCcc
Confidence 334556654334678999998543 233445567777887 666655432 359999999 888999999999
Q ss_pred ccccC
Q 024806 258 KNVLV 262 (262)
Q Consensus 258 e~v~I 262 (262)
+++||
T Consensus 249 ~~~~V 253 (311)
T PLN02645 249 QICMV 253 (311)
T ss_pred cEEEE
Confidence 99987
No 98
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=98.50 E-value=4.9e-07 Score=70.90 Aligned_cols=76 Identities=21% Similarity=0.379 Sum_probs=52.0
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCC---H-----------HHHHHHHHHhcCCCCcccceEEeC-CCCCCCCCChHHHh
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSN---E-----------KAVTAIVSFLLGPERAEKIQIFAG-DVVPRKKPDPVKIC 241 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~---~-----------~~~~~~L~~~~l~~~f~~~~Iv~s-~~~~~~KPdp~~~~ 241 (262)
+.|++.+.|+.|.+.||.++|+||-. . ..++.+++.+++. + .++.+ ..-..+||.+-|+
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip--~---~~~~a~~~d~~RKP~~GM~- 103 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIP--I---QVYAAPHKDPCRKPNPGMW- 103 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS---E---EEEECGCSSTTSTTSSHHH-
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCc--e---EEEecCCCCCCCCCchhHH-
Confidence 44689999999999999999999982 2 4455666667554 2 23333 3337899999999
Q ss_pred hhhhhhhhhhcc----cCCcccccC
Q 024806 242 SLTVDIVCNVLK----THAHKNVLV 262 (262)
Q Consensus 242 ~~~~~~a~~~lg----v~p~e~v~I 262 (262)
+.+++.+. ++.++++||
T Consensus 104 ----~~~~~~~~~~~~id~~~Sf~V 124 (159)
T PF08645_consen 104 ----EFALKDYNDGVEIDLANSFYV 124 (159)
T ss_dssp ----HHHCCCTSTT--S-CCC-EEE
T ss_pred ----HHHHHhccccccccccceEEE
Confidence 66666665 477887775
No 99
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.49 E-value=2.9e-06 Score=66.98 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=41.5
Q ss_pred CCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC
Q 024806 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (262)
Q Consensus 174 ~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~ 217 (262)
.+.+-||+.+++..|+++|.+++++|++.+..++.+-..+|+..
T Consensus 86 k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 86 KPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred CCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcH
Confidence 47899999999999999999999999999999999999998866
No 100
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.47 E-value=2.1e-07 Score=78.08 Aligned_cols=76 Identities=14% Similarity=0.074 Sum_probs=59.8
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHH--HHHHHhcCCC-CcccceEEeCCCCCCCCCChHHHhhhhhhhhhhh
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVT--AIVSFLLGPE-RAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNV 251 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~--~~L~~~~l~~-~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~ 251 (262)
..++||+.++|+.|+++|++++++||+++.... ..|+.+|+.. +|+ .|++++++.. ..+ ..++++
T Consensus 23 ~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~--~Ii~s~~~~~-----~~l-----~~~~~~ 90 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPE--MIISSGEIAV-----QMI-----LESKKR 90 (242)
T ss_pred CccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccc--eEEccHHHHH-----HHH-----Hhhhhh
Confidence 467999999999999999999999999887666 7899999987 899 8899886432 233 445566
Q ss_pred cccCCcccccC
Q 024806 252 LKTHAHKNVLV 262 (262)
Q Consensus 252 lgv~p~e~v~I 262 (262)
+|..|.++++|
T Consensus 91 ~~~~~~~~~~v 101 (242)
T TIGR01459 91 FDIRNGIIYLL 101 (242)
T ss_pred ccCCCceEEEe
Confidence 66666666654
No 101
>PTZ00445 p36-lilke protein; Provisional
Probab=98.46 E-value=8.8e-07 Score=71.37 Aligned_cols=82 Identities=16% Similarity=0.252 Sum_probs=58.4
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHH---------------HHHHHHHHhcCCCCcccceEEeCC-----------C
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEK---------------AVTAIVSFLLGPERAEKIQIFAGD-----------V 229 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~---------------~~~~~L~~~~l~~~f~~~~Iv~s~-----------~ 229 (262)
.+-|+...++..|++.|++++|||=++.. .++..|+.-+-.--.. .+++.. .
T Consensus 75 ~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~--~~~~yyp~~w~~p~~y~~ 152 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIK--KVYAYYPKFWQEPSDYRP 152 (219)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceee--eeeeeCCcccCChhhhhh
Confidence 35677888999999999999999988753 5777777432222121 232211 2
Q ss_pred CCCCCCChHH--HhhhhhhhhhhhcccCCcccccC
Q 024806 230 VPRKKPDPVK--ICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 230 ~~~~KPdp~~--~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
++..||+|.+ |- + +.+++++|+.|+|++||
T Consensus 153 ~gl~KPdp~iK~yH-l--e~ll~~~gl~peE~LFI 184 (219)
T PTZ00445 153 LGLDAPMPLDKSYH-L--KQVCSDFNVNPDEILFI 184 (219)
T ss_pred hcccCCCccchHHH-H--HHHHHHcCCCHHHeEee
Confidence 3788999999 71 1 55789999999999986
No 102
>PRK10444 UMP phosphatase; Provisional
Probab=98.40 E-value=9e-08 Score=80.56 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=27.1
Q ss_pred EeCCCCCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 225 FAGDVVPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 225 v~s~~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
.+.+.....||+|++| +.+++.++++|++++||
T Consensus 165 ~g~~~~~~gKP~~~~~-----~~~~~~~~~~~~~~v~I 197 (248)
T PRK10444 165 SGRKPFYVGKPSPWII-----RAALNKMQAHSEETVIV 197 (248)
T ss_pred hCCCccccCCCCHHHH-----HHHHHHcCCCcccEEEE
Confidence 3334445679999999 88899999999999987
No 103
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=7.8e-06 Score=64.01 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=47.2
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGD 228 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~ 228 (262)
+.+.||..++++..+++++++.|+|++....+..+++.+++.+..+.+.|++.+
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~ 125 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNN 125 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecC
Confidence 678999999999999999999999999999999999999877777755555544
No 104
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.24 E-value=1.4e-06 Score=69.92 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=36.2
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCc
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f 219 (262)
|++.++|+.++++|++++|+|++....++.+++.+|+...+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~ 132 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDN 132 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGG
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceE
Confidence 55559999999999999999999999999999998877643
No 105
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.16 E-value=3.8e-07 Score=76.51 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=63.5
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceE--EeCCCCCCCCCChHHHhhhhhhhhhhhcccC
Q 024806 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQI--FAGDVVPRKKPDPVKICSLTVDIVCNVLKTH 255 (262)
Q Consensus 178 ~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~I--v~s~~~~~~KPdp~~~~~~~~~~a~~~lgv~ 255 (262)
++++.++++.|+++|+++ |+||.+.......+..++...+|. .+ .+.+....+||+|.+| +.+++++|+.
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~--~i~~~g~~~~~~gKP~~~~~-----~~~~~~~~~~ 211 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAE--LIKQLGGKVIYSGKPYPAIF-----HKALKECSNI 211 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHH--HHHHhCCcEecCCCCCHHHH-----HHHHHHcCCC
Confidence 789999999999899997 889999887777777777777776 44 5666656899999999 8889999975
Q ss_pred -CcccccC
Q 024806 256 -AHKNVLV 262 (262)
Q Consensus 256 -p~e~v~I 262 (262)
+++++||
T Consensus 212 ~~~~~~~v 219 (242)
T TIGR01459 212 PKNRMLMV 219 (242)
T ss_pred CcccEEEE
Confidence 5689886
No 106
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.08 E-value=5.3e-06 Score=65.27 Aligned_cols=77 Identities=9% Similarity=0.096 Sum_probs=66.1
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC-CcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhcc
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE-RAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLK 253 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~-~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lg 253 (262)
....||+.++|+.|.+. +.++|.|++.+..++.+++.++... +|+ .+++.++....||. | ...++.+|
T Consensus 41 v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~--~~l~r~~~~~~~~~---~-----~K~L~~l~ 109 (162)
T TIGR02251 41 VFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVIS--RRLYRESCVFTNGK---Y-----VKDLSLVG 109 (162)
T ss_pred EEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEe--EEEEccccEEeCCC---E-----EeEchhcC
Confidence 56789999999999988 9999999999999999999998766 888 78888877666665 5 55688899
Q ss_pred cCCcccccC
Q 024806 254 THAHKNVLV 262 (262)
Q Consensus 254 v~p~e~v~I 262 (262)
.+++++|+|
T Consensus 110 ~~~~~vIiV 118 (162)
T TIGR02251 110 KDLSKVIII 118 (162)
T ss_pred CChhhEEEE
Confidence 988998876
No 107
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.04 E-value=1.5e-05 Score=68.15 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCc
Q 024806 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (262)
Q Consensus 180 gv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f 219 (262)
++.++|+.|+++|++++++|+.+...+...++.+++..+|
T Consensus 25 ~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~~~ 64 (273)
T PRK00192 25 PAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLEDPF 64 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCE
Confidence 3457788889999999999999999999999999887655
No 108
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.01 E-value=2.4e-05 Score=61.53 Aligned_cols=64 Identities=19% Similarity=0.180 Sum_probs=38.9
Q ss_pred HHHHHHHHHCCC--eEEEEeCC-------CHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhc
Q 024806 182 AKLIDQALEKGV--KVAVCSTS-------NEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVL 252 (262)
Q Consensus 182 ~e~L~~L~~~G~--~l~IvTn~-------~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~l 252 (262)
.+.++.+++.+. ++.|+||+ ....++.+-+.+|+. .+- ....||.. + +.+.+.+
T Consensus 65 ~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp-vl~---------h~~kKP~~--~-----~~i~~~~ 127 (168)
T PF09419_consen 65 AEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP-VLR---------HRAKKPGC--F-----REILKYF 127 (168)
T ss_pred HHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc-EEE---------eCCCCCcc--H-----HHHHHHH
Confidence 344455555554 59999998 467788888888642 221 23578843 3 3334444
Q ss_pred c-----cCCcccccC
Q 024806 253 K-----THAHKNVLV 262 (262)
Q Consensus 253 g-----v~p~e~v~I 262 (262)
+ .+|+|.+||
T Consensus 128 ~~~~~~~~p~eiavI 142 (168)
T PF09419_consen 128 KCQKVVTSPSEIAVI 142 (168)
T ss_pred hhccCCCCchhEEEE
Confidence 3 358888876
No 109
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=97.99 E-value=6.2e-05 Score=63.97 Aligned_cols=76 Identities=11% Similarity=-0.038 Sum_probs=43.5
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCH-----HHHHHHHHHhcCCC---CcccceEEeCCCCCCCCCChHHHhhhhhhhh
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNE-----KAVTAIVSFLLGPE---RAEKIQIFAGDVVPRKKPDPVKICSLTVDIV 248 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~-----~~~~~~L~~~~l~~---~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a 248 (262)
.++++.++++.++..+..+.++++... ...+.+.+.+++.. +++...+.. . +..| +..+ +.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~-~--~~~K--~~~l-----~~l 207 (272)
T PRK10530 138 TFTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIAR-K--GNSK--GKRL-----TQW 207 (272)
T ss_pred ceEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEec-C--CCCh--HHHH-----HHH
Confidence 457788888888777777777777542 22333334443321 111000111 1 1223 3455 788
Q ss_pred hhhcccCCcccccC
Q 024806 249 CNVLKTHAHKNVLV 262 (262)
Q Consensus 249 ~~~lgv~p~e~v~I 262 (262)
++.+|++++++++|
T Consensus 208 ~~~~gi~~~e~i~~ 221 (272)
T PRK10530 208 VEAQGWSMKNVVAF 221 (272)
T ss_pred HHHcCCCHHHeEEe
Confidence 99999999999875
No 110
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=97.96 E-value=2.3e-05 Score=66.32 Aligned_cols=76 Identities=14% Similarity=0.079 Sum_probs=48.8
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCH---HHHHHHHHH-hcCCCCcccceEEeCCCC-----CCCCCChHHHh--hhhh
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNE---KAVTAIVSF-LLGPERAEKIQIFAGDVV-----PRKKPDPVKIC--SLTV 245 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~---~~~~~~L~~-~~l~~~f~~~~Iv~s~~~-----~~~KPdp~~~~--~~~~ 245 (262)
++||+.++|+.|+++|.++.++||++. +.+...|+. .++....+ .|++|.+. ...+|...+|. .-++
T Consensus 25 ~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~--~i~TS~~at~~~l~~~~~~~kv~viG~~~l 102 (269)
T COG0647 25 AIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPD--DIVTSGDATADYLAKQKPGKKVYVIGEEGL 102 (269)
T ss_pred cCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHH--HeecHHHHHHHHHHhhCCCCEEEEECCcch
Confidence 568999999999999999999999964 334455555 44545566 68887643 23344445553 2222
Q ss_pred hhhhhhccc
Q 024806 246 DIVCNVLKT 254 (262)
Q Consensus 246 ~~a~~~lgv 254 (262)
...++.+|+
T Consensus 103 ~~~l~~~G~ 111 (269)
T COG0647 103 KEELEGAGF 111 (269)
T ss_pred HHHHHhCCc
Confidence 334444553
No 111
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=97.96 E-value=9e-06 Score=62.12 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=50.3
Q ss_pred HHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 185 IDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 185 L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
|+.|.+.|++++|+|+.....++...+.+|+..+|. +.+ -.-..| +..++++++.++|+.||
T Consensus 44 ik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~q-----G~~------dK~~a~-----~~L~~~~~l~~e~~ayi 105 (170)
T COG1778 44 IKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQ-----GIS------DKLAAF-----EELLKKLNLDPEEVAYV 105 (170)
T ss_pred HHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeee-----chH------hHHHHH-----HHHHHHhCCCHHHhhhh
Confidence 556778899999999999999999999999987775 111 124566 77899999999999875
No 112
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=97.95 E-value=2.8e-05 Score=64.48 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=23.0
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~ 217 (262)
+.|+.|+++|++++++|+.+...+...++.+++..
T Consensus 27 ~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (230)
T PRK01158 27 EAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSG 61 (230)
T ss_pred HHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCC
Confidence 45556666777777777777666666666665543
No 113
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=97.94 E-value=1.4e-05 Score=64.08 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=53.5
Q ss_pred HHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 184 LIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 184 ~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
.++.|+++|++++|+||.....+..+++.+|+..+|+ . .++.++.+ +.+++.+|++|+|++||
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~--g---------~~~k~~~l-----~~~~~~~gl~~~ev~~V 118 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQ--G---------QSNKLIAF-----SDLLEKLAIAPEQVAYI 118 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeec--C---------CCcHHHHH-----HHHHHHhCCCHHHEEEE
Confidence 5667788999999999999999999999998877774 1 24557788 88899999999999986
No 114
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.93 E-value=0.00018 Score=59.42 Aligned_cols=52 Identities=17% Similarity=0.098 Sum_probs=41.9
Q ss_pred CCCCCccHHHHHHHHHHCCCeEEEEeCCCHHH---HHHHHHHhcCCCCcccceEEeCC
Q 024806 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEKA---VTAIVSFLLGPERAEKIQIFAGD 228 (262)
Q Consensus 174 ~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~---~~~~L~~~~l~~~f~~~~Iv~s~ 228 (262)
..++.|++.++++.|+++|+++.++|+.+... ....|...|...+ + .++...
T Consensus 118 ~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~-~--~LiLR~ 172 (229)
T TIGR01675 118 AAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGW-K--HLILRG 172 (229)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc-C--eeeecC
Confidence 46899999999999999999999999998666 6677777776655 4 455543
No 115
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=97.87 E-value=0.0001 Score=58.57 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=60.7
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCC---------------HHHHHHHHHHhcCCCCcccceEEe-CC----CCCCCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN---------------EKAVTAIVSFLLGPERAEKIQIFA-GD----VVPRKK 234 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~---------------~~~~~~~L~~~~l~~~f~~~~Iv~-s~----~~~~~K 234 (262)
+.+.||+.+.|..|++.||+++|+||.+ ...+...|+..|+ .|+ .|+. .. ....+|
T Consensus 30 ~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv--~id--~i~~Cph~p~~~c~cRK 105 (181)
T COG0241 30 FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGV--KID--GILYCPHHPEDNCDCRK 105 (181)
T ss_pred hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCC--ccc--eEEECCCCCCCCCcccC
Confidence 5688999999999999999999999942 2334445555554 566 3433 22 246899
Q ss_pred CChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 235 PDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 235 Pdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
|.|.++ +.+++.+++++....+|
T Consensus 106 P~~gm~-----~~~~~~~~iD~~~s~~V 128 (181)
T COG0241 106 PKPGML-----LSALKEYNIDLSRSYVV 128 (181)
T ss_pred CChHHH-----HHHHHHhCCCccceEEe
Confidence 999999 88899999999988876
No 116
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=97.82 E-value=9.3e-05 Score=62.93 Aligned_cols=36 Identities=22% Similarity=0.175 Sum_probs=30.9
Q ss_pred HHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC
Q 024806 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (262)
Q Consensus 182 ~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~ 217 (262)
.+.|+.|+++|++++++|+.+...+...++.+++..
T Consensus 26 ~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (270)
T PRK10513 26 KQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHMEQ 61 (270)
T ss_pred HHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCCC
Confidence 366778889999999999999999999999887753
No 117
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=97.77 E-value=8.1e-05 Score=63.44 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=15.3
Q ss_pred CCcEEEEecCccccccCc
Q 024806 76 LPSALLFDCDGVLVDTEK 93 (262)
Q Consensus 76 ~ik~viFD~DGTL~d~~~ 93 (262)
|+|.++||+||||++...
T Consensus 1 m~kli~~DlDGTLl~~~~ 18 (272)
T PRK15126 1 MARLAAFDMDGTLLMPDH 18 (272)
T ss_pred CccEEEEeCCCcCcCCCC
Confidence 489999999999997543
No 118
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=97.69 E-value=0.00013 Score=59.97 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC
Q 024806 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (262)
Q Consensus 180 gv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~ 217 (262)
...+.|+.|+++|++++++|+.+...+...++.+++..
T Consensus 22 ~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~ 59 (215)
T TIGR01487 22 RAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSG 59 (215)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCC
Confidence 34466778888899999999998888888888876653
No 119
>PRK10976 putative hydrolase; Provisional
Probab=97.68 E-value=0.00013 Score=61.97 Aligned_cols=18 Identities=22% Similarity=0.408 Sum_probs=15.3
Q ss_pred CCcEEEEecCccccccCc
Q 024806 76 LPSALLFDCDGVLVDTEK 93 (262)
Q Consensus 76 ~ik~viFD~DGTL~d~~~ 93 (262)
|+|.|+||+||||++...
T Consensus 1 mikli~~DlDGTLl~~~~ 18 (266)
T PRK10976 1 MYQVVASDLDGTLLSPDH 18 (266)
T ss_pred CceEEEEeCCCCCcCCCC
Confidence 379999999999997654
No 120
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=97.66 E-value=0.00014 Score=61.72 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=29.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC
Q 024806 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (262)
Q Consensus 181 v~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~ 217 (262)
+.+.|+.++++|++++++|+.+-..+..+++.+++..
T Consensus 25 ~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 25 TKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred HHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc
Confidence 3366667788899999999998888888888887766
No 121
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=97.65 E-value=0.00015 Score=58.51 Aligned_cols=40 Identities=15% Similarity=0.264 Sum_probs=27.3
Q ss_pred CCCCCccHHHHHHHHHHCCCeEEEEeCCCHH-------HHHHHHHHh
Q 024806 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEK-------AVTAIVSFL 213 (262)
Q Consensus 174 ~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~-------~~~~~L~~~ 213 (262)
.++++||+.|+|+.|.+.|+.+.++|..+.. .....|++.
T Consensus 71 ~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~h 117 (191)
T PF06941_consen 71 NLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERH 117 (191)
T ss_dssp T--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHH
Confidence 3789999999999999999888888777533 334555554
No 122
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=97.59 E-value=4.2e-05 Score=63.96 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.5
Q ss_pred CCCCCChHHHhhhhhhhhhhhcccCCccc-ccC
Q 024806 231 PRKKPDPVKICSLTVDIVCNVLKTHAHKN-VLV 262 (262)
Q Consensus 231 ~~~KPdp~~~~~~~~~~a~~~lgv~p~e~-v~I 262 (262)
...||+|++| +.++++++++++++ +||
T Consensus 185 ~~~KP~~~~~-----~~~~~~~~~~~~~~~~~I 212 (236)
T TIGR01460 185 VVGKPSPAIY-----RAALNLLQARPERRDVMV 212 (236)
T ss_pred eecCCCHHHH-----HHHHHHhCCCCccceEEE
Confidence 3679999999 88999999999888 775
No 123
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=97.56 E-value=0.00019 Score=59.74 Aligned_cols=46 Identities=26% Similarity=0.245 Sum_probs=37.1
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCH---HHHHHHHHHhcCCCCcc
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNE---KAVTAIVSFLLGPERAE 220 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~---~~~~~~L~~~~l~~~f~ 220 (262)
.++.||+.++++.++++|++|.++||.+. .....-|+..|...+-.
T Consensus 114 ~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~ 162 (229)
T PF03767_consen 114 APAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDH 162 (229)
T ss_dssp GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSC
T ss_pred CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccch
Confidence 47899999999999999999999999854 45566677777655443
No 124
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.56 E-value=0.00028 Score=60.21 Aligned_cols=39 Identities=5% Similarity=0.031 Sum_probs=33.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCc
Q 024806 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (262)
Q Consensus 181 v~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f 219 (262)
+.+.|+.|+++|++++++|+.....+..+.+.+++.++|
T Consensus 23 a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~p~ 61 (302)
T PRK12702 23 ARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEHPF 61 (302)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeE
Confidence 346778889999999999999999999999999887644
No 125
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.56 E-value=0.0014 Score=55.33 Aligned_cols=52 Identities=17% Similarity=0.096 Sum_probs=39.0
Q ss_pred CCCCCccHHHHHHHHHHCCCeEEEEeCCCHHH---HHHHHHHhcCCCCcccceEEeCC
Q 024806 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEKA---VTAIVSFLLGPERAEKIQIFAGD 228 (262)
Q Consensus 174 ~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~---~~~~L~~~~l~~~f~~~~Iv~s~ 228 (262)
..++.||+.++.+.|+++|+++.++||.+... ....|+..|...+ + .++..+
T Consensus 143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~-~--~LiLR~ 197 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTW-E--KLILKD 197 (275)
T ss_pred cCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCc-c--eeeecC
Confidence 37889999999999999999999999998543 4445555666554 3 455543
No 126
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.51 E-value=0.00025 Score=52.61 Aligned_cols=80 Identities=19% Similarity=0.098 Sum_probs=60.8
Q ss_pred CCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHHh---hhhh-hhhh
Q 024806 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKIC---SLTV-DIVC 249 (262)
Q Consensus 174 ~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~---~~~~-~~a~ 249 (262)
...++|.+.++++.++..|+-++..|=+...-+...|+.+++..||+ .++. +|+|.-++ ++.. ..+-
T Consensus 39 ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFh--y~Vi-------ePhP~K~~ML~~llr~i~~e 109 (164)
T COG4996 39 EVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFH--YIVI-------EPHPYKFLMLSQLLREINTE 109 (164)
T ss_pred EEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEE--EEEe-------cCCChhHHHHHHHHHHHHHh
Confidence 37899999999999999999999999998899999999999999998 5554 45555443 1111 1223
Q ss_pred hhcccCCcccccC
Q 024806 250 NVLKTHAHKNVLV 262 (262)
Q Consensus 250 ~~lgv~p~e~v~I 262 (262)
+...+.|.+.||+
T Consensus 110 r~~~ikP~~Ivy~ 122 (164)
T COG4996 110 RNQKIKPSEIVYL 122 (164)
T ss_pred hccccCcceEEEE
Confidence 4455678877763
No 127
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00075 Score=57.23 Aligned_cols=26 Identities=12% Similarity=0.276 Sum_probs=24.0
Q ss_pred CCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 232 RKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 232 ~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
.+||++.++ +.+.++++++|++++||
T Consensus 222 ~GKP~~~m~-----~~l~~~~~i~psRt~mv 247 (306)
T KOG2882|consen 222 LGKPSTFMF-----EYLLEKFNIDPSRTCMV 247 (306)
T ss_pred cCCCCHHHH-----HHHHHHcCCCcceEEEE
Confidence 479999999 88899999999999997
No 128
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.40 E-value=0.00041 Score=54.13 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=46.5
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCC-CCcccceEEeCCCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP-ERAEKIQIFAGDVV 230 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~-~~f~~~~Iv~s~~~ 230 (262)
..++||+.++|+.|++. ++++|+|++.+..+..+++.++.. .+|.. .|++.++.
T Consensus 57 v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F~~-ri~~rd~~ 111 (156)
T TIGR02250 57 TKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYFGD-RIISRDES 111 (156)
T ss_pred EEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCeecc-EEEEeccC
Confidence 67899999999999966 999999999999999999999887 48831 67777764
No 129
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=97.35 E-value=0.00042 Score=49.95 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=39.1
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHhcCCCCcccceEEeCCC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSN---EKAVTAIVSFLLGPERAEKIQIFAGDV 229 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~---~~~~~~~L~~~~l~~~f~~~~Iv~s~~ 229 (262)
.++||+.++|+.|+++|.++.++||++ +......|+.+|+.--.+ .|+++..
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~--~i~ts~~ 68 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDED--EIITSGM 68 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GG--GEEEHHH
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcC--EEEChHH
Confidence 478999999999999999999999995 345666778888875554 6887653
No 130
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=97.30 E-value=0.0002 Score=62.64 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=20.2
Q ss_pred EEEEecCccccccCcchHHHHHHHHHHHc
Q 024806 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEK 107 (262)
Q Consensus 79 ~viFD~DGTL~d~~~~~~~~a~~~~~~~~ 107 (262)
+++||+||||+++... +. .+.++++.+
T Consensus 2 ~~ifD~DGvL~~g~~~-i~-ga~eal~~L 28 (321)
T TIGR01456 2 GFAFDIDGVLFRGKKP-IA-GASDALRRL 28 (321)
T ss_pred EEEEeCcCceECCccc-cH-HHHHHHHHH
Confidence 6899999999999885 43 455555543
No 131
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=97.24 E-value=0.0021 Score=50.20 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=30.2
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHHHHH---HHHHH
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVT---AIVSF 212 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~---~~L~~ 212 (262)
..|++.++++.|+++|+++.++|+.+...+. ..++.
T Consensus 28 ~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~ 66 (157)
T smart00775 28 THPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQ 66 (157)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHH
Confidence 3589999999999999999999999877664 56655
No 132
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.24 E-value=0.0011 Score=56.55 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=30.2
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCC
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~ 216 (262)
+.|+.|+++|++++++|+.+...+...++.+++.
T Consensus 31 ~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 31 PWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred HHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 5677888999999999999999999999999874
No 133
>PTZ00174 phosphomannomutase; Provisional
Probab=97.23 E-value=0.00097 Score=56.10 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=20.2
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVS 211 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~ 211 (262)
+.|+.|+++|++++++|+.+...+...++
T Consensus 29 ~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 29 DTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 55666777888888888887665555554
No 134
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=97.23 E-value=0.00077 Score=55.55 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=21.7
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcC
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG 215 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l 215 (262)
+.|+.|+++|++++++|+.+...+..+++.+++
T Consensus 22 ~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~ 54 (225)
T TIGR01482 22 EAIRKAESVGIPVVLVTGNSVQFARALAKLIGT 54 (225)
T ss_pred HHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCC
Confidence 445566667777777777776666666666653
No 135
>PLN02887 hydrolase family protein
Probab=97.22 E-value=0.0013 Score=61.92 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=30.3
Q ss_pred HHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCC
Q 024806 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (262)
Q Consensus 182 ~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~ 216 (262)
.+.|+.|+++|++++|+|+.+...+...++.+++.
T Consensus 331 ~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 331 AKALKEALSRGVKVVIATGKARPAVIDILKMVDLA 365 (580)
T ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence 36777889999999999999999998899888764
No 136
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=97.14 E-value=0.001 Score=53.46 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=28.0
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVS 211 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~ 211 (262)
..||+.|.|+.|++++.++=.+||...+.-+.+.+
T Consensus 24 avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~ 58 (262)
T KOG3040|consen 24 AVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHE 58 (262)
T ss_pred cCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHH
Confidence 67999999999998889999999996554444433
No 137
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=97.14 E-value=0.0014 Score=55.24 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=19.5
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCC
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~ 216 (262)
+.|+.|+++|++++++|+.+...+...++.+++.
T Consensus 23 ~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 23 EALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 4445555566666666666655555555555443
No 138
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.13 E-value=0.0031 Score=53.22 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=42.9
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCC
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGD 228 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~ 228 (262)
|.+.+.|..|+++|.-+++=|-++++.+...++.+++.++|+ .|+++.
T Consensus 145 ~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd--~ii~~G 192 (297)
T PF05152_consen 145 PAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEGYFD--IIICGG 192 (297)
T ss_pred hHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccccE--EEEeCC
Confidence 556677889999999999999999999999999999999999 777654
No 139
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.13 E-value=0.0008 Score=63.33 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=43.7
Q ss_pred CCCCccHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHhcCCCCcc
Q 024806 175 LPLRPGVAKLIDQALEKG-VKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G-~~l~IvTn~~~~~~~~~L~~~~l~~~f~ 220 (262)
..++||+.++|+.|+++| ++++|+||.+...++.+++++|+.++|.
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~ 429 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHA 429 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeec
Confidence 578999999999999999 9999999999999999999999988886
No 140
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=97.10 E-value=0.00067 Score=63.54 Aligned_cols=46 Identities=20% Similarity=0.144 Sum_probs=43.5
Q ss_pred CCCCccHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHhcCCCCcc
Q 024806 175 LPLRPGVAKLIDQALEKGV-KVAVCSTSNEKAVTAIVSFLLGPERAE 220 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~-~l~IvTn~~~~~~~~~L~~~~l~~~f~ 220 (262)
-+++||+.++|+.|+++|+ +++++||.+...++.+++++|+.++|.
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~ 407 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHA 407 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhh
Confidence 4689999999999999999 999999999999999999999988886
No 141
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=97.06 E-value=0.0014 Score=54.28 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCC
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~ 216 (262)
|...+.|+.|+++|++++++|+.+...+..+++.+++.
T Consensus 18 ~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 18 PETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred HHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 34457777888899999999999999999999988765
No 142
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.03 E-value=0.0023 Score=60.62 Aligned_cols=35 Identities=11% Similarity=0.058 Sum_probs=29.4
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~ 217 (262)
+.|+.|+++|++++++|+.+...+...++.+++.+
T Consensus 440 eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~~ 474 (694)
T PRK14502 440 DALRLLKDKELPLVFCSAKTMGEQDLYRNELGIKD 474 (694)
T ss_pred HHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCCC
Confidence 56677888999999999999888888888887644
No 143
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=96.99 E-value=0.0029 Score=47.45 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=44.4
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHHH---------------HHHHHHHhcCCCCcccceEEeCCC----CCC----C
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKA---------------VTAIVSFLLGPERAEKIQIFAGDV----VPR----K 233 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~~---------------~~~~L~~~~l~~~f~~~~Iv~s~~----~~~----~ 233 (262)
+.+++.+.|+.|+++|+.+.++|+.+... ....|++.++ +| | .++.+.. -+. .
T Consensus 25 ~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~i-pY-d--~l~~~kp~~~~~~~~~dD~ 100 (126)
T TIGR01689 25 PILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNV-PY-D--EIYVGKPWCGHDGFYVDDR 100 (126)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCC-CC-c--eEEeCCCcCCCCCceecch
Confidence 45677788889999999999999987553 3455555544 33 3 3433321 011 1
Q ss_pred CCChHHHhhhhhhhhhhhccc
Q 024806 234 KPDPVKICSLTVDIVCNVLKT 254 (262)
Q Consensus 234 KPdp~~~~~~~~~~a~~~lgv 254 (262)
-=.|+.|.++..+.+.+.++.
T Consensus 101 ~ir~~~~~~~~~~~~~~~~~~ 121 (126)
T TIGR01689 101 AIRPSEFSSLTYDEINTLTKI 121 (126)
T ss_pred hhCHHHHHhcCHHHHHHHHhh
Confidence 123556666665666666654
No 144
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=96.69 E-value=0.0023 Score=60.37 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=39.6
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~ 216 (262)
.+++||+.++|+.|+++|++++++||..+..++.+++.+|+.
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN 445 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc
Confidence 468999999999999999999999999999999999999884
No 145
>PLN02645 phosphoglycolate phosphatase
Probab=96.42 E-value=0.0077 Score=52.47 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=41.5
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHhcCCCCcccceEEeCC
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSN---EKAVTAIVSFLLGPERAEKIQIFAGD 228 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~---~~~~~~~L~~~~l~~~f~~~~Iv~s~ 228 (262)
++||+.++|+.|+++|++++++||++ .......|+.+|+...++ .|+++.
T Consensus 45 ~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~--~I~ts~ 97 (311)
T PLN02645 45 LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEE--EIFSSS 97 (311)
T ss_pred cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChh--hEeehH
Confidence 67999999999999999999999997 455555667888877776 778775
No 146
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=96.32 E-value=0.077 Score=49.19 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=26.7
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH-hcCC
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF-LLGP 216 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~-~~l~ 216 (262)
+.|.+.+ .++++|.. +|+|.+.+..++.+.+. +|++
T Consensus 111 l~~~a~~---~~~~~g~~-vvVSASp~~~Vepfa~~~LGid 147 (497)
T PLN02177 111 VHPETWR---VFNSFGKR-YIITASPRIMVEPFVKTFLGAD 147 (497)
T ss_pred cCHHHHH---HHHhCCCE-EEEECCcHHHHHHHHHHcCCCC
Confidence 5565554 44567755 99999999999999976 6654
No 147
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=96.19 E-value=0.0096 Score=59.20 Aligned_cols=54 Identities=22% Similarity=0.443 Sum_probs=48.7
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP 231 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~ 231 (262)
+++||+.++++.|++.|+++.++|+.....+..+.+.+|+.+.++ .++++++..
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~--~~v~g~~l~ 581 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTS--QSVSGEKLD 581 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCC--ceeEhHHhH
Confidence 789999999999999999999999999999999999999988887 667766553
No 148
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=96.00 E-value=0.017 Score=49.19 Aligned_cols=36 Identities=8% Similarity=0.012 Sum_probs=28.2
Q ss_pred CccHHHHHHHHHH-CCCeEEEEeCCCHHHHHHHHHHh
Q 024806 178 RPGVAKLIDQALE-KGVKVAVCSTSNEKAVTAIVSFL 213 (262)
Q Consensus 178 ~pgv~e~L~~L~~-~G~~l~IvTn~~~~~~~~~L~~~ 213 (262)
.+.+.+.|+.|.+ .|+.++|+|+.+...+..+++.+
T Consensus 38 ~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~ 74 (266)
T PRK10187 38 PDNILQGLQLLATANDGALALISGRSMVELDALAKPY 74 (266)
T ss_pred CHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcc
Confidence 3566677888887 68999999999988887777654
No 149
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=95.94 E-value=0.13 Score=42.14 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=30.2
Q ss_pred eCCCHHHHHHHHHHhcCC----CCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 199 STSNEKAVTAIVSFLLGP----ERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 199 Tn~~~~~~~~~L~~~~l~----~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
++.....+...++..++. .+|. .|...+ ..|+. .. +.+++.+|++++++++|
T Consensus 146 ~~~~~~~~~~~l~~~~~~~~~~~~~~--ei~~~~---~~Kg~--al-----~~l~~~lgi~~~~vi~~ 201 (221)
T TIGR02463 146 SDSRMPRFTALLADLGLAIVQGNRFS--HVLGAS---SSKGK--AA-----NWLKATYNQPDVKTLGL 201 (221)
T ss_pred chhHHHHHHHHHHHcCCeEEecCCee--EEecCC---CCHHH--HH-----HHHHHHhCCCCCcEEEE
Confidence 444445555666665543 3332 233322 23444 33 77899999999998865
No 150
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=95.92 E-value=0.07 Score=41.47 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=45.9
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHHHH---HHHHHHh--cCCCCcccceEEeC-CCC------CCCCCChHHHhhhh
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAV---TAIVSFL--LGPERAEKIQIFAG-DVV------PRKKPDPVKICSLT 244 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~---~~~L~~~--~l~~~f~~~~Iv~s-~~~------~~~KPdp~~~~~~~ 244 (262)
.++|+.++...+.++||++.-+|..+.... +..|+.. +...+.+. -++.+ +.. ..-.++|+.|....
T Consensus 28 ~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~G-pv~~sP~~l~~al~rEvi~~~p~~fK~~~ 106 (157)
T PF08235_consen 28 THPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDG-PVLLSPDSLFSALHREVISKDPEEFKIAC 106 (157)
T ss_pred hhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCC-CEEECCcchhhhhhccccccChHHHHHHH
Confidence 458999999999999999999999974333 3444444 22244443 24444 210 12245788887555
Q ss_pred hhhhhhh
Q 024806 245 VDIVCNV 251 (262)
Q Consensus 245 ~~~a~~~ 251 (262)
+..+...
T Consensus 107 L~~l~~~ 113 (157)
T PF08235_consen 107 LRDLRAL 113 (157)
T ss_pred HHHHHHh
Confidence 5555554
No 151
>PRK10671 copA copper exporting ATPase; Provisional
Probab=95.82 E-value=0.014 Score=57.77 Aligned_cols=70 Identities=17% Similarity=0.194 Sum_probs=54.4
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhccc
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLKT 254 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lgv 254 (262)
-+++||+.+.|+.|+++|++++++|+.....++.+.+.+|+.++|. .+ .|... ..+.+.++.
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~~~~--~~---------~p~~K-------~~~i~~l~~ 710 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIA--GV---------LPDGK-------AEAIKRLQS 710 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCEEEe--CC---------CHHHH-------HHHHHHHhh
Confidence 3679999999999999999999999999999999999999977664 21 13222 224566677
Q ss_pred CCcccccC
Q 024806 255 HAHKNVLV 262 (262)
Q Consensus 255 ~p~e~v~I 262 (262)
++++++||
T Consensus 711 ~~~~v~~v 718 (834)
T PRK10671 711 QGRQVAMV 718 (834)
T ss_pred cCCEEEEE
Confidence 77777764
No 152
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=95.75 E-value=0.042 Score=45.42 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=37.2
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHH----HHHHHHHhcCCCCccc
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKA----VTAIVSFLLGPERAEK 221 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~----~~~~L~~~~l~~~f~~ 221 (262)
..+.||+.|++++..++|.+|.-+||...+. ...-|++.|+...-+.
T Consensus 121 sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~ 171 (274)
T COG2503 121 SKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLES 171 (274)
T ss_pred cccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCccccccc
Confidence 5789999999999999999999999997665 3445556666555543
No 153
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=95.72 E-value=0.0052 Score=41.52 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=24.0
Q ss_pred CCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 232 RKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 232 ~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
.+||+|.+| +.+++.++++|++++||
T Consensus 2 ~gKP~p~~~-----~~a~~~~~~~~~~~~~V 27 (75)
T PF13242_consen 2 CGKPSPGML-----EQALKRLGVDPSRCVMV 27 (75)
T ss_dssp CSTTSHHHH-----HHHHHHHTSGGGGEEEE
T ss_pred CCCCcHHHH-----HHHHHHcCCCHHHEEEE
Confidence 479999999 88999999999999986
No 154
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=95.66 E-value=0.027 Score=47.42 Aligned_cols=50 Identities=10% Similarity=0.254 Sum_probs=41.7
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCC---CHHHHHHHHHHhcCCCCcccceEEeCC
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTS---NEKAVTAIVSFLLGPERAEKIQIFAGD 228 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~---~~~~~~~~L~~~~l~~~f~~~~Iv~s~ 228 (262)
++||+.++|+.|+++|++++++||+ +...+...++.+|+....+ .|+++.
T Consensus 18 ~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~--~iit~~ 70 (249)
T TIGR01457 18 RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLE--TVFTAS 70 (249)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChh--hEeeHH
Confidence 4679999999999999999999994 4777788888898876666 677774
No 155
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=95.58 E-value=0.028 Score=48.12 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=40.1
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHhcCCCCcccceEEeCC
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSN---EKAVTAIVSFLLGPERAEKIQIFAGD 228 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~---~~~~~~~L~~~~l~~~f~~~~Iv~s~ 228 (262)
++||+.++|+.|+++|++++++||++ +......|+.+|+....+ .|+++.
T Consensus 19 ~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~--~i~ts~ 71 (279)
T TIGR01452 19 VVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAE--QLFSSA 71 (279)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChh--hEecHH
Confidence 67999999999999999999999975 444456778888866655 677764
No 156
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=95.50 E-value=0.019 Score=48.64 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=39.3
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHhcCCCCcccceEEeCC
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEK---AVTAIVSFLLGPERAEKIQIFAGD 228 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~---~~~~~L~~~~l~~~f~~~~Iv~s~ 228 (262)
+.||+.++|+.|+++|++++++||++.. .+...|+.+|+.--.+ .|+++.
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~--~i~ts~ 74 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISED--EVFTPA 74 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHH--HeEcHH
Confidence 6799999999999999999999997544 4677777887753333 566664
No 157
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=95.11 E-value=0.1 Score=47.83 Aligned_cols=31 Identities=13% Similarity=-0.071 Sum_probs=26.4
Q ss_pred HHHHHHHCCCeEEEEeCCCHHHHHHHHHH-hcC
Q 024806 184 LIDQALEKGVKVAVCSTSNEKAVTAIVSF-LLG 215 (262)
Q Consensus 184 ~L~~L~~~G~~l~IvTn~~~~~~~~~L~~-~~l 215 (262)
.++..+..| +++|+|.+++.+++..++. +|.
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~ 132 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRA 132 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCC
Confidence 566777788 9999999999999999998 544
No 158
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=95.06 E-value=0.23 Score=41.97 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=31.7
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~ 213 (262)
-..-+++.++++.|.++|+++..+|..+.......++.+
T Consensus 80 ~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~L 118 (252)
T PF11019_consen 80 ELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLREL 118 (252)
T ss_pred EEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHH
Confidence 345689999999999999999999999866666655544
No 159
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=94.57 E-value=0.04 Score=42.84 Aligned_cols=53 Identities=15% Similarity=0.282 Sum_probs=42.6
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcC-CCCcccceEEeCCCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG-PERAEKIQIFAGDVV 230 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l-~~~f~~~~Iv~s~~~ 230 (262)
..+.||+.++|+.|.+. +.++|.|.+.+..++.+++.+.- ..+|+ .++..++.
T Consensus 35 v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ldp~~~~~~--~~~~r~~~ 88 (159)
T PF03031_consen 35 VKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALDPNGKLFS--RRLYRDDC 88 (159)
T ss_dssp EEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHTTTTSSEE--EEEEGGGS
T ss_pred EeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhhhhccccc--cccccccc
Confidence 55789999999999776 99999999999999999999965 56787 77776654
No 160
>PLN02580 trehalose-phosphatase
Probab=94.45 E-value=0.092 Score=46.90 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=29.7
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF 212 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~ 212 (262)
.+-|++.++|+.|.++ .+++|||+.+...+..++.-
T Consensus 141 ~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l~~ 176 (384)
T PLN02580 141 LMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELVGL 176 (384)
T ss_pred cCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHhCC
Confidence 3557888899999888 68999999998888887753
No 161
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=94.30 E-value=0.14 Score=42.45 Aligned_cols=63 Identities=10% Similarity=0.106 Sum_probs=37.4
Q ss_pred CCCeEEEEeCCCH----HHHHHHHHHhcCCCCcccceEEeC----CCCCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 191 KGVKVAVCSTSNE----KAVTAIVSFLLGPERAEKIQIFAG----DVVPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 191 ~G~~l~IvTn~~~----~~~~~~L~~~~l~~~f~~~~Iv~s----~~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
..+++.+...... ..+...++..+ ..+. .++++ +..+..++++... +.+++++|++++++++|
T Consensus 111 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~--~~~~--~~~~~~~~~ei~~~~~~K~~al-----~~l~~~~g~~~~~~i~~ 181 (236)
T TIGR02471 111 GPFKISYLLDPEGEPILPQIRQRLRQQS--QAAK--VILSCGWFLDVLPLRASKGLAL-----RYLSYRWGLPLEQILVA 181 (236)
T ss_pred CCeeEEEEECcccchHHHHHHHHHHhcc--CCEE--EEEECCceEEEeeCCCChHHHH-----HHHHHHhCCCHHHEEEE
Confidence 3477777665431 12333444432 2223 34454 3345566777777 78899999999888764
No 162
>PLN02423 phosphomannomutase
Probab=94.20 E-value=0.037 Score=46.46 Aligned_cols=29 Identities=28% Similarity=0.475 Sum_probs=18.8
Q ss_pred CCcEEE-EecCccccccCcchHHHHHHHHHH
Q 024806 76 LPSALL-FDCDGVLVDTEKDGHRISFNDTFK 105 (262)
Q Consensus 76 ~ik~vi-FD~DGTL~d~~~~~~~~a~~~~~~ 105 (262)
+++.++ ||+||||++.... +.....++++
T Consensus 5 ~~~~i~~~D~DGTLl~~~~~-i~~~~~~ai~ 34 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPRKE-ATPEMLEFMK 34 (245)
T ss_pred ccceEEEEeccCCCcCCCCc-CCHHHHHHHH
Confidence 456555 9999999987764 3333344444
No 163
>PRK10444 UMP phosphatase; Provisional
Probab=94.08 E-value=0.12 Score=43.45 Aligned_cols=51 Identities=12% Similarity=0.209 Sum_probs=37.5
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHH---HHHHHHHhcCCCCcccceEEeCC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKA---VTAIVSFLLGPERAEKIQIFAGD 228 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~---~~~~L~~~~l~~~f~~~~Iv~s~ 228 (262)
.+.||+.++|+.|+++|.++.++||++... ....|+.+|+.--.+ .|+++.
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~--~i~ts~ 70 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDS--VFYTSA 70 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHh--hEecHH
Confidence 367999999999999999999999997544 444555566633333 567763
No 164
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=93.98 E-value=0.084 Score=39.91 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=32.3
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCC--CHHHHHHHHHHhcCCCCcc
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTS--NEKAVTAIVSFLLGPERAE 220 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~--~~~~~~~~L~~~~l~~~f~ 220 (262)
+...|++.++++.|.+. |.++|+|.. .....+...+.+ .++|+
T Consensus 67 L~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl--~E~FP 111 (180)
T COG4502 67 LGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWL--KEKFP 111 (180)
T ss_pred cCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHH--HHHCC
Confidence 78899999999999998 999999988 334455555543 44454
No 165
>PLN03017 trehalose-phosphatase
Probab=93.73 E-value=0.17 Score=44.93 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=26.3
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIV 210 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L 210 (262)
+.+++.+.|+.|. +|++++|+|+.+...+..++
T Consensus 134 i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~ 166 (366)
T PLN03017 134 MSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFV 166 (366)
T ss_pred CCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhh
Confidence 3466677888888 67999999999988777764
No 166
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=93.69 E-value=0.62 Score=38.99 Aligned_cols=64 Identities=13% Similarity=0.206 Sum_probs=37.6
Q ss_pred HCCCeEEEEeCCCH-----HHHHHHHHHhcCCCCcccceEEeC----CCCCCCCCChHHHhhhhhhhhhhhcccCCcccc
Q 024806 190 EKGVKVAVCSTSNE-----KAVTAIVSFLLGPERAEKIQIFAG----DVVPRKKPDPVKICSLTVDIVCNVLKTHAHKNV 260 (262)
Q Consensus 190 ~~G~~l~IvTn~~~-----~~~~~~L~~~~l~~~f~~~~Iv~s----~~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v 260 (262)
+.-+++.++..... ......+...++ .+. .++++ +.....++..... +.+++.+|+++++++
T Consensus 117 ~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~--~~~~~~~~ldi~~~~~~K~~al-----~~l~~~~~i~~~~~i 187 (249)
T TIGR01485 117 QRPHKVSFFLDPEAAPEVIKQLTEMLKETGL--DVK--LIYSSGKDLDILPQGSGKGQAL-----QYLLQKLAMEPSQTL 187 (249)
T ss_pred cCCeeEEEEechhhhhHHHHHHHHHHHhcCC--CEE--EEEECCceEEEEeCCCChHHHH-----HHHHHHcCCCccCEE
Confidence 34578887765432 112223333222 122 34444 3445667777777 888999999999987
Q ss_pred cC
Q 024806 261 LV 262 (262)
Q Consensus 261 ~I 262 (262)
++
T Consensus 188 ~~ 189 (249)
T TIGR01485 188 VC 189 (249)
T ss_pred EE
Confidence 64
No 167
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=93.50 E-value=0.17 Score=49.45 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=28.0
Q ss_pred CccHHHHHHHHHH-CCCeEEEEeCCCHHHHHHHHHHh
Q 024806 178 RPGVAKLIDQALE-KGVKVAVCSTSNEKAVTAIVSFL 213 (262)
Q Consensus 178 ~pgv~e~L~~L~~-~G~~l~IvTn~~~~~~~~~L~~~ 213 (262)
.+++.+.|+.|.+ .|+.++|+|+.+...++..+..+
T Consensus 516 ~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~ 552 (726)
T PRK14501 516 DKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDL 552 (726)
T ss_pred CHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCC
Confidence 3566688888888 48999999999988787776544
No 168
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=93.49 E-value=0.15 Score=46.58 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=39.4
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhc---------CCCCcccceEEeCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLL---------GPERAEKIQIFAGD 228 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~---------l~~~f~~~~Iv~s~ 228 (262)
+..-|.+..+|+.||+.|-++.++||++-..+...++.+- +.++|| .|++..
T Consensus 182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFD--vVIv~A 242 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFD--VVIVDA 242 (448)
T ss_dssp EE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCEC--EEEES-
T ss_pred ccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhhee--EEEEcC
Confidence 3456899999999999999999999999999999999772 456899 777654
No 169
>PLN02151 trehalose-phosphatase
Probab=93.45 E-value=0.17 Score=44.73 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=27.9
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVS 211 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~ 211 (262)
.+.|++.+.|+.|.+ +.+++|+|+.+...+..++.
T Consensus 120 ~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 120 FMSKKMRNTVRKLAK-CFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred cCCHHHHHHHHHHhc-CCCEEEEECCCHHHHHHHcC
Confidence 345777888888884 47999999999888877764
No 170
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=93.24 E-value=0.48 Score=38.97 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=54.3
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhc-------CCCCcccceEEeCCCCCCCCCChHHHhhhhhhh
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLL-------GPERAEKIQIFAGDVVPRKKPDPVKICSLTVDI 247 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~-------l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~ 247 (262)
.+.++++...++..++.|++++|.|.++...+..+..+-+ +..||| . ..| .|-.-..| ..
T Consensus 122 ~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~gdl~~y~~gyfD--t-----~iG-~K~e~~sy-----~~ 188 (254)
T KOG2630|consen 122 AHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAGDLRKYISGYFD--T-----TIG-LKVESQSY-----KK 188 (254)
T ss_pred ccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcchHHHHhhhhhh--c-----ccc-ceehhHHH-----HH
Confidence 4789999999999999999999999999776666554321 344665 2 123 35556777 66
Q ss_pred hhhhcccCCccccc
Q 024806 248 VCNVLKTHAHKNVL 261 (262)
Q Consensus 248 a~~~lgv~p~e~v~ 261 (262)
+.+.+|.+|.+.++
T Consensus 189 I~~~Ig~s~~eiLf 202 (254)
T KOG2630|consen 189 IGHLIGKSPREILF 202 (254)
T ss_pred HHHHhCCChhheEE
Confidence 77888888877655
No 171
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=92.78 E-value=0.056 Score=43.26 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=14.8
Q ss_pred CCcEEEEecCcccccc
Q 024806 76 LPSALLFDCDGVLVDT 91 (262)
Q Consensus 76 ~ik~viFD~DGTL~d~ 91 (262)
.+|+|+||+||||+|.
T Consensus 20 ~ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 20 NIRLLICDVDGVFSDG 35 (183)
T ss_pred CceEEEEcCCeeeecC
Confidence 5999999999999986
No 172
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=92.70 E-value=0.3 Score=48.37 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=25.8
Q ss_pred ccHHHHHHHH-HHCCCeEEEEeCCCHHHHHHHHHH
Q 024806 179 PGVAKLIDQA-LEKGVKVAVCSTSNEKAVTAIVSF 212 (262)
Q Consensus 179 pgv~e~L~~L-~~~G~~l~IvTn~~~~~~~~~L~~ 212 (262)
|++.++|+.| ++.|..++|+|+.+...++.++..
T Consensus 619 ~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~ 653 (854)
T PLN02205 619 SKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSP 653 (854)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCC
Confidence 5566777777 567899999999988777777753
No 173
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=92.41 E-value=0.075 Score=39.86 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=13.3
Q ss_pred cEEEEecCccccccC
Q 024806 78 SALLFDCDGVLVDTE 92 (262)
Q Consensus 78 k~viFD~DGTL~d~~ 92 (262)
|+++||+||||++..
T Consensus 1 kli~~DlD~Tl~~~~ 15 (128)
T TIGR01681 1 KVIVFDLDNTLWTGE 15 (128)
T ss_pred CEEEEeCCCCCCCCC
Confidence 689999999999874
No 174
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=92.35 E-value=0.34 Score=40.07 Aligned_cols=40 Identities=8% Similarity=-0.008 Sum_probs=35.9
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC
Q 024806 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (262)
Q Consensus 178 ~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~ 217 (262)
.+++.++|+.|+++|+++.++|+.+...+...++.+|+.+
T Consensus 17 ~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~ 56 (225)
T TIGR02461 17 PGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVEP 56 (225)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCC
Confidence 4568899999999999999999999999999999998755
No 175
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=92.27 E-value=0.36 Score=40.23 Aligned_cols=51 Identities=22% Similarity=0.239 Sum_probs=38.0
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHH-hcCCCCcccceEEeCC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSN---EKAVTAIVSF-LLGPERAEKIQIFAGD 228 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~---~~~~~~~L~~-~~l~~~f~~~~Iv~s~ 228 (262)
.++|++.+.|+.|+++|+++.++||+. .......|.. +|+.--++ .++++.
T Consensus 14 ~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~--~iits~ 68 (236)
T TIGR01460 14 KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPD--QIITSG 68 (236)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHH--HeeeHH
Confidence 468999999999999999999999885 3444445555 56654455 677764
No 176
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=92.16 E-value=0.34 Score=39.66 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCC
Q 024806 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (262)
Q Consensus 180 gv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~ 216 (262)
...++|+.|+++|++++++||.+...+...++.+++.
T Consensus 20 ~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 20 PAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 3678999999999999999999999999999999875
No 177
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=92.12 E-value=0.36 Score=40.98 Aligned_cols=36 Identities=11% Similarity=0.071 Sum_probs=28.0
Q ss_pred CCCccHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHH
Q 024806 176 PLRPGVAKLIDQALEK-GVKVAVCSTSNEKAVTAIVS 211 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~-G~~l~IvTn~~~~~~~~~L~ 211 (262)
.+.+++.++|+.|..+ .--++|+|+.+...++..+.
T Consensus 40 ~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 40 VPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFG 76 (266)
T ss_pred CCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcC
Confidence 4567788888899887 23499999999887777776
No 178
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=92.11 E-value=0.95 Score=37.90 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=40.2
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEe
Q 024806 167 MVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFA 226 (262)
Q Consensus 167 ~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~ 226 (262)
.+.+....+.+.+|+.++++.|.++++|+.|.|.+--..++.+|++.+. +++...|++
T Consensus 81 ~~~V~~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~--~~~Nv~VvS 138 (246)
T PF05822_consen 81 EEAVKESDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGV--FHPNVKVVS 138 (246)
T ss_dssp HHHHHCS---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT----BTTEEEEE
T ss_pred HHHHHhcchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCC--CCCCeEEEe
Confidence 3444444588999999999999999999999999998999999999733 444444554
No 179
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=92.08 E-value=0.27 Score=48.06 Aligned_cols=44 Identities=27% Similarity=0.231 Sum_probs=40.8
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCc
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f 219 (262)
+++||+.+.|+.|+++|++++++|+.+...++.+.+.+|+..++
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~~~~ 611 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGIDFRA 611 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCeec
Confidence 78999999999999999999999999999999999999986443
No 180
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=91.87 E-value=4.1 Score=36.45 Aligned_cols=47 Identities=11% Similarity=0.056 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh---cCCCCcccceEEeC
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL---LGPERAEKIQIFAG 227 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~---~l~~~f~~~~Iv~s 227 (262)
+....+|..+++.|-++.++||+.-.........+ ++..||+ .+++.
T Consensus 201 ~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd--~v~~~ 250 (424)
T KOG2469|consen 201 GTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFD--LVETR 250 (424)
T ss_pred CccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEE--EEEEe
Confidence 33445899999999999999999877777777654 5677888 55543
No 181
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=90.66 E-value=0.63 Score=39.85 Aligned_cols=51 Identities=14% Similarity=0.164 Sum_probs=36.7
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHH---HHHhcCCCCcccceEEeC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAI---VSFLLGPERAEKIQIFAG 227 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~---L~~~~l~~~f~~~~Iv~s 227 (262)
.+.||+.++++.|++.|-.+.++||++....+.. .+.+|+.. +..+.|+++
T Consensus 38 ~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~-v~e~~i~ss 91 (306)
T KOG2882|consen 38 KPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS-VKEENIFSS 91 (306)
T ss_pred CCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc-cCcccccCh
Confidence 5789999999999999999999999975544444 44555543 333345444
No 182
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=90.56 E-value=0.15 Score=36.57 Aligned_cols=15 Identities=47% Similarity=0.806 Sum_probs=13.0
Q ss_pred EEEecCccccccCcc
Q 024806 80 LLFDCDGVLVDTEKD 94 (262)
Q Consensus 80 viFD~DGTL~d~~~~ 94 (262)
++||+||||++....
T Consensus 1 ~l~D~dGvl~~g~~~ 15 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEP 15 (101)
T ss_dssp EEEESTTTSEETTEE
T ss_pred CEEeCccEeEeCCCc
Confidence 689999999987764
No 183
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=90.49 E-value=0.7 Score=40.41 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=38.5
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh---cCCCCcccceEEe
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL---LGPERAEKIQIFA 226 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~---~l~~~f~~~~Iv~ 226 (262)
.--|....+|+.|+++|-++.++||++-.++..=.+.+ .+.++|| .|+.
T Consensus 240 ~r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFD--VVIv 291 (510)
T KOG2470|consen 240 ERNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFD--VVIV 291 (510)
T ss_pred hccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhh--eeEE
Confidence 34577889999999999999999999988888766655 3456788 4444
No 184
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=90.25 E-value=0.44 Score=39.40 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=12.2
Q ss_pred EEEEecCccccccCc
Q 024806 79 ALLFDCDGVLVDTEK 93 (262)
Q Consensus 79 ~viFD~DGTL~d~~~ 93 (262)
.|+||+||||++...
T Consensus 1 li~~DlDGTLl~~~~ 15 (225)
T TIGR02461 1 VIFTDLDGTLLPPGY 15 (225)
T ss_pred CEEEeCCCCCcCCCC
Confidence 378999999998544
No 185
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=90.07 E-value=0.45 Score=45.82 Aligned_cols=44 Identities=16% Similarity=0.139 Sum_probs=41.0
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCc
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f 219 (262)
++.||+.+.++.|++.|+++.++|+.....+..+.+.+|+.++|
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~ 489 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFI 489 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEE
Confidence 78899999999999999999999999999999999999986655
No 186
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=90.01 E-value=0.51 Score=45.69 Aligned_cols=46 Identities=26% Similarity=0.239 Sum_probs=42.5
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcc
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~ 220 (262)
-++.|++.+.++.|+++|+++.++|+-++..++.+-+.+|+++++-
T Consensus 536 D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~A 581 (713)
T COG2217 536 DELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRA 581 (713)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhhec
Confidence 3688999999999999999999999999999999999999977764
No 187
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=89.93 E-value=0.76 Score=38.61 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=34.5
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~ 217 (262)
+...++|+.|+++|++++++|+.+...+...++.+++.+
T Consensus 19 ~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~~ 57 (256)
T TIGR01486 19 GPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLED 57 (256)
T ss_pred hHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCC
Confidence 346789999999999999999999999999999997653
No 188
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=89.64 E-value=0.59 Score=45.08 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=41.8
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcc
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~ 220 (262)
++.||+.+.++.|++.|+++.++|+-+...+..+-+.+|+.++|-
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A 485 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVA 485 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEc
Confidence 789999999999999999999999999999999999999976653
No 189
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=89.50 E-value=1.3 Score=38.04 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=31.9
Q ss_pred CCCCCccHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHh
Q 024806 174 LLPLRPGVAKLIDQALEKG-VKVAVCSTSNEKAVTAIVSFL 213 (262)
Q Consensus 174 ~~~~~pgv~e~L~~L~~~G-~~l~IvTn~~~~~~~~~L~~~ 213 (262)
+..+||...++++.+++.| .+++|+||+.. ..+++.+
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgsl---pdv~~~L 127 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSL---PDVLEEL 127 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCCh---HHHHHHh
Confidence 5789999999999999999 79999999996 4555554
No 190
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=89.34 E-value=0.61 Score=45.01 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=40.8
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCc
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f 219 (262)
++.||+.+.++.|++.|+++.++|+-+...+..+-+.+|+.++|
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~ 488 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFL 488 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEE
Confidence 56899999999999999999999999999999999999997655
No 191
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=88.76 E-value=0.99 Score=38.04 Aligned_cols=40 Identities=20% Similarity=0.212 Sum_probs=34.6
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC
Q 024806 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (262)
Q Consensus 178 ~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~ 217 (262)
.|...+.|+.|+++|++++++|+.+...+...++.+++..
T Consensus 22 ~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (272)
T PRK10530 22 LPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALDT 61 (272)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCC
Confidence 4567789999999999999999999888999999887654
No 192
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=88.57 E-value=0.31 Score=39.35 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=20.3
Q ss_pred CCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 231 PRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 231 ~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
+...+++... +.+++.+|++++++++|
T Consensus 159 p~~~~K~~~~-----~~~~~~~~~~~~~~~~~ 185 (204)
T TIGR01484 159 PAGVDKGSAL-----QALLKELNGKRDEILAF 185 (204)
T ss_pred cCCCChHHHH-----HHHHHHhCCCHHHEEEE
Confidence 3456666666 78889999988888764
No 193
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=88.51 E-value=2.5 Score=33.19 Aligned_cols=33 Identities=6% Similarity=0.051 Sum_probs=23.6
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Q 024806 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVS 211 (262)
Q Consensus 178 ~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~ 211 (262)
..++...|..+++. .+++-+|..-....+..-.
T Consensus 74 ~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~~ 106 (194)
T COG5663 74 AQLVKQVLPSLKEE-HRLIYITARKADLTRITYA 106 (194)
T ss_pred HHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHHH
Confidence 35677788888887 8898888886655554433
No 194
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=87.75 E-value=0.26 Score=38.21 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=13.5
Q ss_pred cEEEEecCccccccCcc
Q 024806 78 SALLFDCDGVLVDTEKD 94 (262)
Q Consensus 78 k~viFD~DGTL~d~~~~ 94 (262)
|.+|||+||||+.....
T Consensus 1 k~LVlDLD~TLv~~~~~ 17 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSK 17 (159)
T ss_dssp EEEEEE-CTTTEEEESS
T ss_pred CEEEEeCCCcEEEEeec
Confidence 68999999999987753
No 195
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.57 E-value=9.2 Score=31.69 Aligned_cols=40 Identities=23% Similarity=0.188 Sum_probs=35.3
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG 215 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l 215 (262)
..+.||+.+.++.|.++ +.=+|+|.+.+..+++....+|+
T Consensus 82 a~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~ 121 (315)
T COG4030 82 AKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGV 121 (315)
T ss_pred cccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCC
Confidence 67999999999999887 77788899988899988888866
No 196
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=86.79 E-value=1.7 Score=43.03 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=30.2
Q ss_pred CCCccHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHH
Q 024806 176 PLRPGVAKLIDQALEK-GVKVAVCSTSNEKAVTAIVSF 212 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~-G~~l~IvTn~~~~~~~~~L~~ 212 (262)
.+.|++.++|+.|.+. +-.++|+|+.+...++.++..
T Consensus 532 ~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~ 569 (797)
T PLN03063 532 GLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGE 569 (797)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCC
Confidence 3557888889999765 688999999998888888864
No 197
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=86.12 E-value=1.5 Score=36.89 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=12.8
Q ss_pred EEEEecCccccccCc
Q 024806 79 ALLFDCDGVLVDTEK 93 (262)
Q Consensus 79 ~viFD~DGTL~d~~~ 93 (262)
.|+||+||||++...
T Consensus 1 li~~DlDGTll~~~~ 15 (256)
T TIGR01486 1 WIFTDLDGTLLDPHG 15 (256)
T ss_pred CEEEcCCCCCcCCCC
Confidence 378999999999765
No 198
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=85.74 E-value=2.5 Score=31.51 Aligned_cols=43 Identities=7% Similarity=0.079 Sum_probs=35.6
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCC-HHHHHHHHHHhcCCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN-EKAVTAIVSFLLGPE 217 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~-~~~~~~~L~~~~l~~ 217 (262)
+-.|+++...|..|+++|+.++++|++. .+.+...|+.+.+..
T Consensus 43 ~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~ 86 (144)
T KOG4549|consen 43 MIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQ 86 (144)
T ss_pred eeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCc
Confidence 6689999999999999999999999994 456677777765543
No 199
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=85.35 E-value=3 Score=37.11 Aligned_cols=60 Identities=25% Similarity=0.267 Sum_probs=37.4
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCC------------HHHHHHHHHHhcCCCCcccceEEeC-CCCCCCCCChHHHh
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSN------------EKAVTAIVSFLLGPERAEKIQIFAG-DVVPRKKPDPVKIC 241 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~------------~~~~~~~L~~~~l~~~f~~~~Iv~s-~~~~~~KPdp~~~~ 241 (262)
++|.+.+=|+.|.+.||+++|-||.. ..-++.+...+++ -| .+..+ .....+||..-+++
T Consensus 105 l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl~v--Pi---~~~~A~~~~~yRKP~tGMwe 177 (422)
T KOG2134|consen 105 LFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANLGV--PI---QLLAAIIKGKYRKPSTGMWE 177 (422)
T ss_pred eccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhcCC--ce---EEeeeccCCcccCcchhHHH
Confidence 55666677888899999999999974 1223333333322 22 12222 23357899999993
No 200
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=84.51 E-value=3.3 Score=31.17 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=38.1
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPER 218 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~ 218 (262)
-.+++.+.+.|+.|++. +.++|.|+-....+...++..|+..+
T Consensus 29 Gklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~ 71 (152)
T COG4087 29 GKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVE 71 (152)
T ss_pred cEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCcee
Confidence 46899999999999999 99999999999999999998875443
No 201
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=84.33 E-value=2 Score=43.24 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=39.4
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~ 217 (262)
++.||+.+.++.|++.|+++.++|+.....+..+.+.+|+..
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~ 578 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFS 578 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCC
Confidence 689999999999999999999999999899999999998864
No 202
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=84.17 E-value=2 Score=42.27 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=39.7
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~ 217 (262)
++.|++.+.++.|++.|+++.++|+-+...+..+-+.+|+.+
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~ 483 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGT 483 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC
Confidence 688999999999999999999999999999999999999864
No 203
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=83.40 E-value=3 Score=39.76 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=48.3
Q ss_pred CCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh-cCCCCcccceEEeCCCCCC
Q 024806 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL-LGPERAEKIQIFAGDVVPR 232 (262)
Q Consensus 174 ~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~-~l~~~f~~~~Iv~s~~~~~ 232 (262)
.+.+.|++.++|+.+.+. +.+.|+|-+.+..+..+++-+ .-..||.. .|++.++.+.
T Consensus 199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~liDP~~~lF~d-RIisrde~~~ 256 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLIDPEGKYFGD-RIISRDESPF 256 (635)
T ss_pred EEEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHhCCCCccccc-eEEEecCCCc
Confidence 367899999999999988 999999999999999999977 55567775 7888887443
No 204
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=83.24 E-value=2.6 Score=42.57 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=45.5
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVV 230 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~ 230 (262)
++.|++.+.++.|++.|+++.++|+-....+..+-+.+|+.+--. .++++++.
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~~~~--~vi~G~~~ 631 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGG--LAMEGKEF 631 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCCCCc--eEeeHHHh
Confidence 788999999999999999999999999999999999999875443 46666553
No 205
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=83.00 E-value=2.6 Score=33.84 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=32.7
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~ 213 (262)
+-+.+.+.|+.|+++|++++++|+.+...+..+++.+
T Consensus 18 ~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 18 LSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 3477889999999999999999999999999988864
No 206
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=82.65 E-value=0.73 Score=38.54 Aligned_cols=15 Identities=40% Similarity=0.709 Sum_probs=12.7
Q ss_pred cEEEEecCccccccC
Q 024806 78 SALLFDCDGVLVDTE 92 (262)
Q Consensus 78 k~viFD~DGTL~d~~ 92 (262)
.+++||+||||++..
T Consensus 4 ~~l~lD~DGTL~~~~ 18 (244)
T TIGR00685 4 RAFFFDYDGTLSEIV 18 (244)
T ss_pred EEEEEecCccccCCc
Confidence 589999999999753
No 207
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=81.35 E-value=1.5 Score=34.48 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=15.9
Q ss_pred CCCcEEEEecCccccccCc
Q 024806 75 VLPSALLFDCDGVLVDTEK 93 (262)
Q Consensus 75 ~~ik~viFD~DGTL~d~~~ 93 (262)
..+++|++|+||||.+...
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~ 41 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH 41 (170)
T ss_pred CCCCEEEEecCCccccCCC
Confidence 4789999999999996544
No 208
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=80.41 E-value=1.8 Score=37.78 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=32.4
Q ss_pred CCCCccHHHHHHHHHHC----CCeEEEEeCCC---HHH-HHHHHHHhcCC
Q 024806 175 LPLRPGVAKLIDQALEK----GVKVAVCSTSN---EKA-VTAIVSFLLGP 216 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~----G~~l~IvTn~~---~~~-~~~~L~~~~l~ 216 (262)
-.++||+.++++.|+.+ |+++.++||+. ... ++.+.+.+|+.
T Consensus 15 ~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~ 64 (321)
T TIGR01456 15 KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD 64 (321)
T ss_pred ccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC
Confidence 35699999999999998 99999999996 444 33344666653
No 209
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=79.00 E-value=2.4 Score=25.40 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Q 024806 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (262)
Q Consensus 182 ~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~ 213 (262)
.|+.+.|++.|++.+=||...+...+..|..+
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~~ 40 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKLRKL 40 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHHHHH
Confidence 37888999999999999999999999998875
No 210
>COG4996 Predicted phosphatase [General function prediction only]
Probab=78.11 E-value=1.2 Score=33.45 Aligned_cols=15 Identities=40% Similarity=0.663 Sum_probs=13.0
Q ss_pred EEEEecCccccccCc
Q 024806 79 ALLFDCDGVLVDTEK 93 (262)
Q Consensus 79 ~viFD~DGTL~d~~~ 93 (262)
+|+||.||||.|-..
T Consensus 2 ~i~~d~d~t~wdhh~ 16 (164)
T COG4996 2 AIVFDADKTLWDHHN 16 (164)
T ss_pred cEEEeCCCccccccc
Confidence 789999999998654
No 211
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=78.10 E-value=4.1 Score=40.77 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=43.2
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVV 230 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~ 230 (262)
++.|++.+.++.|++.|+++.++|+-....+..+-+.+|+.. + .++++.+.
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~~--~--~v~~g~~l 565 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGIDA--N--DFLLGADI 565 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCC--C--CeeecHhh
Confidence 678999999999999999999999999999999999999853 2 35555443
No 212
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=78.00 E-value=2.2 Score=35.06 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=13.5
Q ss_pred CCCcEEEEecCccccc
Q 024806 75 VLPSALLFDCDGVLVD 90 (262)
Q Consensus 75 ~~ik~viFD~DGTL~d 90 (262)
.++..|+.|+||||++
T Consensus 5 ~~~~lIFtDlD~TLl~ 20 (274)
T COG3769 5 QMPLLIFTDLDGTLLP 20 (274)
T ss_pred ccceEEEEcccCcccC
Confidence 4567788899999998
No 213
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=77.44 E-value=4.1 Score=40.96 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=44.3
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP 231 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~ 231 (262)
++.|++.+.++.|++.|+++.++|+-....+..+-+.+|+.+ + .++++.+..
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~--~--~v~~G~el~ 601 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLDA--G--EVLIGSDIE 601 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCc--c--CceeHHHHH
Confidence 678999999999999999999999999999999999999842 2 466665543
No 214
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=77.15 E-value=5.6 Score=33.19 Aligned_cols=38 Identities=3% Similarity=-0.063 Sum_probs=32.9
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCC
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~ 216 (262)
|.+.++++.++++|++++++|+.+...+..+++.+++.
T Consensus 24 ~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~ 61 (249)
T TIGR01485 24 LRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLL 61 (249)
T ss_pred HHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCC
Confidence 55668888999999999999999999999998877654
No 215
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=77.12 E-value=37 Score=30.42 Aligned_cols=51 Identities=8% Similarity=-0.018 Sum_probs=33.6
Q ss_pred EEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhccc
Q 024806 195 VAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLKT 254 (262)
Q Consensus 195 l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lgv 254 (262)
-++||+..-.-....+=.+|+...|..|-|+++-.+|. ..-| +++.++||-
T Consensus 373 nVlvTttqLipalaKvLL~gLg~~fpiENIYSa~kiGK----escF-----erI~~RFg~ 423 (468)
T KOG3107|consen 373 NVLVTTTQLIPALAKVLLYGLGSSFPIENIYSATKIGK----ESCF-----ERIQSRFGR 423 (468)
T ss_pred EEEEeccchhHHHHHHHHHhcCCcccchhhhhhhhccH----HHHH-----HHHHHHhCC
Confidence 45667765333333333458888888777888776663 4677 778888885
No 216
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=76.95 E-value=1.5 Score=37.37 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=24.4
Q ss_pred CCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 231 PRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 231 ~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
-.+||+|.+| +.|++.+|..+.+++||
T Consensus 187 ~~GKP~~~i~-----~~al~~~~~~~~~~~mV 213 (269)
T COG0647 187 VIGKPSPAIY-----EAALEKLGLDRSEVLMV 213 (269)
T ss_pred ccCCCCHHHH-----HHHHHHhCCCcccEEEE
Confidence 4579999999 89999999999999886
No 217
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=76.83 E-value=5 Score=41.07 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=39.9
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~ 217 (262)
++.|++.++++.|++.|+++.++|+-....+..+-+.+|+.+
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~ 687 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIP 687 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCC
Confidence 789999999999999999999999999999999999999964
No 218
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=76.53 E-value=4.3 Score=40.78 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=44.5
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP 231 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~ 231 (262)
++.|++.+.++.|++.|+++.++|+-....+..+-+.+|+.+ + .++++.+..
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~--~--~vi~G~el~ 601 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLEP--G--EPLLGTEIE 601 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC--C--CccchHhhh
Confidence 688999999999999999999999999999999999999852 2 456665543
No 219
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=75.85 E-value=26 Score=32.22 Aligned_cols=77 Identities=12% Similarity=0.086 Sum_probs=60.7
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCC--CHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHHhhhhhhhhhhhccc
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTS--NEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKICSLTVDIVCNVLKT 254 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~--~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~~~~~~~~a~~~lgv 254 (262)
+.-...++.+.+.+.|-++.++|+. +....+.+|...|-+-+-- -++.|.+....|-+...| .++++.=+|
T Consensus 100 pn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d~~ni--piY~S~e~rl~KnSg~LF-----k~Vlk~EnV 172 (635)
T COG5610 100 PNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPDFNNI--PIYMSSEFRLKKNSGNLF-----KAVLKLENV 172 (635)
T ss_pred ccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCCccCc--eeeecceeehhcccchHH-----HHHHhhcCC
Confidence 3345668999999999999999998 5677777888775433332 588888989999999999 888888888
Q ss_pred CCcccc
Q 024806 255 HAHKNV 260 (262)
Q Consensus 255 ~p~e~v 260 (262)
+|.+.+
T Consensus 173 d~~~w~ 178 (635)
T COG5610 173 DPKKWI 178 (635)
T ss_pred ChhheE
Confidence 887654
No 220
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=75.84 E-value=5.1 Score=40.77 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=39.2
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~ 217 (262)
++.|++.+.++.|+++|+++.++|+.....+..+.+.+|+.+
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~ 609 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIIS 609 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC
Confidence 678999999999999999999999999999999999998853
No 221
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=75.69 E-value=6.4 Score=38.92 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=37.7
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhc
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLL 214 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~ 214 (262)
-++.||+...+..|++.|++++++|+-+...++.+-+++|
T Consensus 722 D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VG 761 (951)
T KOG0207|consen 722 DQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVG 761 (951)
T ss_pred cccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhC
Confidence 3678999999999999999999999999999999999997
No 222
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=75.64 E-value=6.3 Score=39.71 Aligned_cols=65 Identities=22% Similarity=0.176 Sum_probs=50.8
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHH
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKI 240 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~ 240 (262)
-++.+++.+.++.|++.|+++-++|+-....+..+-+..|+..--+...++++++.. ...+.+.+
T Consensus 546 Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~-~l~~~el~ 610 (917)
T COG0474 546 DPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELD-ALSDEELA 610 (917)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhh-hcCHHHHH
Confidence 478999999999999999999999999999999999999876655300377777644 23343433
No 223
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=75.52 E-value=3.9 Score=36.40 Aligned_cols=18 Identities=22% Similarity=0.154 Sum_probs=15.3
Q ss_pred CCcEEEEecCccccccCc
Q 024806 76 LPSALLFDCDGVLVDTEK 93 (262)
Q Consensus 76 ~ik~viFD~DGTL~d~~~ 93 (262)
..+.|-||=|+||++...
T Consensus 146 ~L~LvTFDgDvTLY~DG~ 163 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDGA 163 (408)
T ss_pred CceEEEEcCCcccccCCC
Confidence 688999999999987554
No 224
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=74.98 E-value=8.1 Score=31.26 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=35.3
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCC
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~ 216 (262)
..|++.++|+.+.+. +.++|-|.+....++.+++.++..
T Consensus 46 kRP~l~eFL~~~~~~-feIvVwTAa~~~ya~~~l~~l~~~ 84 (195)
T TIGR02245 46 MRPYLHEFLTSAYED-YDIVIWSATSMKWIEIKMTELGVL 84 (195)
T ss_pred eCCCHHHHHHHHHhC-CEEEEEecCCHHHHHHHHHHhccc
Confidence 469999999999986 999999999999999999988653
No 225
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=74.10 E-value=6.2 Score=34.59 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=26.8
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHH
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEK 204 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~ 204 (262)
.-++|.+.++++.++++|+.++|.||+...
T Consensus 141 PlL~p~l~eli~~~k~~Gi~~~L~TNG~~~ 170 (322)
T PRK13762 141 PTLYPYLPELIEEFHKRGFTTFLVTNGTRP 170 (322)
T ss_pred ccchhhHHHHHHHHHHcCCCEEEECCCCCH
Confidence 557889999999999999999999999753
No 226
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=73.54 E-value=2.1 Score=33.46 Aligned_cols=16 Identities=31% Similarity=0.598 Sum_probs=13.5
Q ss_pred cEEEEecCccccccCc
Q 024806 78 SALLFDCDGVLVDTEK 93 (262)
Q Consensus 78 k~viFD~DGTL~d~~~ 93 (262)
|+++||.||||.++..
T Consensus 2 ~~~~~d~dg~l~~~~~ 17 (161)
T TIGR01261 2 KILFIDRDGTLIEEPP 17 (161)
T ss_pred CEEEEeCCCCccccCC
Confidence 6899999999988543
No 227
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=73.41 E-value=9.4 Score=39.14 Aligned_cols=44 Identities=11% Similarity=0.186 Sum_probs=40.6
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCc
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f 219 (262)
++.|++.+.++.|++.|+++.++|+-+...+..+-+..|+.+--
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii~~~ 699 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIVNPS 699 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCC
Confidence 78999999999999999999999999999999999999986543
No 228
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=73.08 E-value=8.4 Score=30.60 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=30.7
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPER 218 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~ 218 (262)
.-+++++.++++.+++.|+.+.|.||+........+...|..++
T Consensus 73 Pll~~~l~~li~~~~~~g~~v~i~TNg~~~~~l~~l~~~g~~~~ 116 (191)
T TIGR02495 73 PTLQAGLPDFLRKVRELGFEVKLDTNGSNPRVLEELLEEGLVDY 116 (191)
T ss_pred ccCcHhHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHhcCCCcE
Confidence 45567788999999999999999999974433333333343333
No 229
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=71.23 E-value=4.3 Score=37.29 Aligned_cols=38 Identities=16% Similarity=0.003 Sum_probs=20.6
Q ss_pred CCCCcEEEEecCccccccCcc-----hHHHHHHHHHHHccCCC
Q 024806 74 SVLPSALLFDCDGVLVDTEKD-----GHRISFNDTFKEKELGV 111 (262)
Q Consensus 74 ~~~ik~viFD~DGTL~d~~~~-----~~~~a~~~~~~~~g~~~ 111 (262)
+..|+++-||+|-||+.+... .+..+...+.++.|.+.
T Consensus 9 l~~i~~iGFDmDyTLa~Y~~~~~~~L~y~~~~~~LV~~~gYP~ 51 (448)
T PF05761_consen 9 LKDIDVIGFDMDYTLARYKSPELEELIYELARERLVEEKGYPE 51 (448)
T ss_dssp CCC--EEEE-TBTTTBEE-CCHHHHHHHHHHHHHHHHHTT--G
T ss_pred cccCCEEEECcccchhhcCHHHHHHHHHHHHHHHHHhccCCCH
Confidence 568999999999999987762 13323333444466654
No 230
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=71.04 E-value=2.8 Score=37.89 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=15.2
Q ss_pred CCcEEEEecCccccccCc
Q 024806 76 LPSALLFDCDGVLVDTEK 93 (262)
Q Consensus 76 ~ik~viFD~DGTL~d~~~ 93 (262)
..+.||+|+||||..+..
T Consensus 374 n~kiVVsDiDGTITkSD~ 391 (580)
T COG5083 374 NKKIVVSDIDGTITKSDA 391 (580)
T ss_pred CCcEEEEecCCcEEehhh
Confidence 357999999999987765
No 231
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=69.77 E-value=11 Score=37.12 Aligned_cols=57 Identities=23% Similarity=0.301 Sum_probs=46.4
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccc--eEEeCCCCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKI--QIFAGDVVP 231 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~--~Iv~s~~~~ 231 (262)
-+|.|++.+.++.+++.|+++-++|+-....++.+-+++|+...-++. ..+++.++.
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD 641 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFD 641 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhh
Confidence 378999999999999999999999999999999999999876655521 345555443
No 232
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=69.51 E-value=3.6 Score=33.29 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.3
Q ss_pred CCCcEEEEecCccccccC
Q 024806 75 VLPSALLFDCDGVLVDTE 92 (262)
Q Consensus 75 ~~ik~viFD~DGTL~d~~ 92 (262)
..-|.+|.|+|+||++..
T Consensus 19 ~~kklLVLDLDeTLvh~~ 36 (195)
T TIGR02245 19 EGKKLLVLDIDYTLFDHR 36 (195)
T ss_pred CCCcEEEEeCCCceEccc
Confidence 356899999999999864
No 233
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=69.37 E-value=10 Score=35.35 Aligned_cols=40 Identities=28% Similarity=0.299 Sum_probs=37.4
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG 215 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l 215 (262)
++.|++.++++.|++.|+++.++|+.....+..+-+.+|+
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi 386 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGI 386 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCc
Confidence 7899999999999999999999999999999999988875
No 234
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.65 E-value=13 Score=34.33 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=54.5
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCC----CCCCChHHHhhhhhhhhhhhc
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP----RKKPDPVKICSLTVDIVCNVL 252 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~----~~KPdp~~~~~~~~~~a~~~l 252 (262)
++-...+.+..|+++|+-++|+|-+....+..+.+.. -+ .|..-+++. .+-|..+-. +.+|++|
T Consensus 256 ~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~kh-----p~--MiLkeedfa~~~iNW~~K~eNi-----rkIAkkl 323 (574)
T COG3882 256 AFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKH-----PD--MILKEEDFAVFQINWDPKAENI-----RKIAKKL 323 (574)
T ss_pred hHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhhC-----CC--eEeeHhhhhhheecCCcchhhH-----HHHHHHh
Confidence 4445678899999999999999999888888877753 22 344444432 467888888 8889999
Q ss_pred ccCCcccccC
Q 024806 253 KTHAHKNVLV 262 (262)
Q Consensus 253 gv~p~e~v~I 262 (262)
++.-+-.|||
T Consensus 324 Nlg~dSmvFi 333 (574)
T COG3882 324 NLGLDSMVFI 333 (574)
T ss_pred CCCccceEEe
Confidence 9866655553
No 235
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=68.49 E-value=3.1 Score=31.79 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=13.7
Q ss_pred cEEEEecCccccccCc
Q 024806 78 SALLFDCDGVLVDTEK 93 (262)
Q Consensus 78 k~viFD~DGTL~d~~~ 93 (262)
+.+++|+||||+++..
T Consensus 3 ~~lvldld~tl~~~~~ 18 (148)
T smart00577 3 KTLVLDLDETLVHSTH 18 (148)
T ss_pred cEEEEeCCCCeECCCC
Confidence 5799999999999753
No 236
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=67.62 E-value=11 Score=31.21 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC
Q 024806 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (262)
Q Consensus 180 gv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~ 217 (262)
.+.+.+..|++.|+++..+|+.++..+...-+.+|+..
T Consensus 27 pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~ 64 (274)
T COG3769 27 PAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQG 64 (274)
T ss_pred ccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCC
Confidence 35689999999999999999999999999999998774
No 237
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=67.62 E-value=20 Score=34.30 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=27.4
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHh--cCCCCcccceEEeCC
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTSN---EKAVTAIVSFL--LGPERAEKIQIFAGD 228 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~~---~~~~~~~L~~~--~l~~~f~~~~Iv~s~ 228 (262)
-||.++....+++||++.-+|... ....+..|+.+ .+...-+...|++.+
T Consensus 561 ~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdGPViLSPd 615 (738)
T KOG2116|consen 561 TGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPDGPVILSPD 615 (738)
T ss_pred hhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCCCCEEeCCC
Confidence 566666677777777777777663 22333444433 344445543444434
No 238
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=67.58 E-value=8.9 Score=39.34 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=39.6
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCc
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f 219 (262)
++.||+.+.++.|++.|+++.++|+-..+.+..+-+..|+.+--
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~~~ 674 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRN 674 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCCCC
Confidence 78899999999999999999999999989999998888876543
No 239
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=66.77 E-value=4.8 Score=33.75 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=18.2
Q ss_pred cEEEEecCccccccCcchHHHHHHHHHH
Q 024806 78 SALLFDCDGVLVDTEKDGHRISFNDTFK 105 (262)
Q Consensus 78 k~viFD~DGTL~d~~~~~~~~a~~~~~~ 105 (262)
..++.|+||||++.... ....+.++++
T Consensus 3 ~ll~sDlD~Tl~~~~~~-~~~~l~~~l~ 29 (247)
T PF05116_consen 3 RLLASDLDGTLIDGDDE-ALARLEELLE 29 (247)
T ss_dssp EEEEEETBTTTBHCHHH-HHHHHHHHHH
T ss_pred EEEEEECCCCCcCCCHH-HHHHHHHHHH
Confidence 57889999999944443 3445555555
No 240
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=62.17 E-value=5 Score=31.28 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=14.2
Q ss_pred cEEEEecCccccccCcc
Q 024806 78 SALLFDCDGVLVDTEKD 94 (262)
Q Consensus 78 k~viFD~DGTL~d~~~~ 94 (262)
+.+++|+|+||+.+...
T Consensus 2 ~~lvlDLDeTLi~~~~~ 18 (162)
T TIGR02251 2 KTLVLDLDETLVHSTFK 18 (162)
T ss_pred cEEEEcCCCCcCCCCCC
Confidence 47999999999987653
No 241
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=61.94 E-value=8.2 Score=32.19 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=25.4
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCH
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNE 203 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~ 203 (262)
.-++++..++++.|++.|+++.|-||+..
T Consensus 83 Pll~~~l~~li~~l~~~g~~v~leTNGtl 111 (238)
T TIGR03365 83 PALQKPLGELIDLGKAKGYRFALETQGSV 111 (238)
T ss_pred hhhhHhHHHHHHHHHHCCCCEEEECCCCC
Confidence 34568899999999999999999999984
No 242
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=61.38 E-value=16 Score=34.18 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=39.5
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcc
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~ 220 (262)
..||+.|-+.+||+.|++...||+-++-.+..+-+..|+++|.-
T Consensus 448 vK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfiA 491 (681)
T COG2216 448 VKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFIA 491 (681)
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchhhhh
Confidence 56999999999999999999999999888888888888877764
No 243
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=60.67 E-value=21 Score=29.41 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=27.6
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCC
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~ 216 (262)
++++ ++++|++++++|+.+...+..+++.+++.
T Consensus 22 ~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~ 54 (236)
T TIGR02471 22 ELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLP 54 (236)
T ss_pred HHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCC
Confidence 3444 47789999999999999999999988764
No 244
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=59.89 E-value=1.3 Score=26.31 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=21.0
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~ 213 (262)
|+.+.|++.|+..|-||...+...+..|..+
T Consensus 10 ELr~~L~~~G~~~GPIt~tTR~vY~kkL~kl 40 (43)
T PF03020_consen 10 ELREELREYGEPPGPITPTTRKVYEKKLAKL 40 (43)
T ss_dssp CCHHCCCCCT-S-----CCCHHHHHHHCHHH
T ss_pred HHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Confidence 4667888899999999999999999888765
No 245
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=59.42 E-value=4.5 Score=33.47 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=7.9
Q ss_pred EEecCccccccCc
Q 024806 81 LFDCDGVLVDTEK 93 (262)
Q Consensus 81 iFD~DGTL~d~~~ 93 (262)
+||+||||.+...
T Consensus 1 ~lDyDGTL~p~~~ 13 (235)
T PF02358_consen 1 FLDYDGTLAPIVD 13 (235)
T ss_dssp EEE-TTTSS---S
T ss_pred CcccCCccCCCCC
Confidence 6899999987655
No 246
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=58.16 E-value=14 Score=32.19 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=0.0
Q ss_pred CCCCCCccccccccccCCCCc--EEEEecCccccccCcc--hHHHHHHHHHHHcc
Q 024806 58 SANPMSMRNVRVTCSASVLPS--ALLFDCDGVLVDTEKD--GHRISFNDTFKEKE 108 (262)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~ik--~viFD~DGTL~d~~~~--~~~~a~~~~~~~~g 108 (262)
..++.+++.-+...+.....+ ++.||+||||+..... ...+++..+-+.-|
T Consensus 14 rr~r~~~~kf~~~~s~~ss~~~fgfafDIDGVL~RG~~~i~~~~~Alr~L~~~~g 68 (389)
T KOG1618|consen 14 RRNRPPMRKFISEISFESSPPTFGFAFDIDGVLFRGHRPIPGALKALRRLVDNQG 68 (389)
T ss_pred HhcCCchhhhhcccCCCCCCCceeEEEecccEEEecCCCCcchHHHHHHHHhcCC
No 247
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.08 E-value=14 Score=31.09 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=38.1
Q ss_pred CCCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCc
Q 024806 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (262)
Q Consensus 174 ~~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f 219 (262)
.+.+.+|..++.+.|.++++++.|.|.+--..++.++++.+...-+
T Consensus 136 ~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~pn 181 (298)
T KOG3128|consen 136 NIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHPN 181 (298)
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCcc
Confidence 3556789999999999999999999999888888888876554444
No 248
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=58.00 E-value=21 Score=31.17 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=26.2
Q ss_pred CCCCCccHHHHHHHHHHCCCeEEEEeCCC
Q 024806 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSN 202 (262)
Q Consensus 174 ~~~~~pgv~e~L~~L~~~G~~l~IvTn~~ 202 (262)
+.-++|++.++++.++++|..+.++||+.
T Consensus 82 EPLL~pdl~eiv~~~~~~g~~v~l~TNG~ 110 (318)
T TIGR03470 82 EPLLHPEIDEIVRGLVARKKFVYLCTNAL 110 (318)
T ss_pred cccccccHHHHHHHHHHcCCeEEEecCce
Confidence 35678999999999999999999999996
No 249
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=57.53 E-value=24 Score=31.12 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=25.2
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN 202 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~ 202 (262)
.-+.|+..++++.++++|+.+.|.||+.
T Consensus 64 Pll~~~~~~ii~~~~~~g~~~~l~TNG~ 91 (358)
T TIGR02109 64 PLARPDLVELVAHARRLGLYTNLITSGV 91 (358)
T ss_pred ccccccHHHHHHHHHHcCCeEEEEeCCc
Confidence 5578999999999999999999999995
No 250
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=56.86 E-value=10 Score=30.80 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=13.8
Q ss_pred cEEEEecCccccccCcc
Q 024806 78 SALLFDCDGVLVDTEKD 94 (262)
Q Consensus 78 k~viFD~DGTL~d~~~~ 94 (262)
-.++||+||||......
T Consensus 12 ~l~lfdvdgtLt~~r~~ 28 (252)
T KOG3189|consen 12 TLCLFDVDGTLTPPRQK 28 (252)
T ss_pred eEEEEecCCcccccccc
Confidence 47999999999876554
No 251
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=55.87 E-value=25 Score=31.35 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=25.6
Q ss_pred CCCCCccHHHHHHHHHHCCCeEEEEeCCC
Q 024806 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSN 202 (262)
Q Consensus 174 ~~~~~pgv~e~L~~L~~~G~~l~IvTn~~ 202 (262)
+.-++|++.++++.++++|+.+.+.||+.
T Consensus 72 EPll~~~~~~il~~~~~~g~~~~i~TNG~ 100 (378)
T PRK05301 72 EPLLRKDLEELVAHARELGLYTNLITSGV 100 (378)
T ss_pred ccCCchhHHHHHHHHHHcCCcEEEECCCc
Confidence 35678999999999999999999999995
No 252
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=55.61 E-value=84 Score=25.17 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=29.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHH----HHHHhcCCCCcccceEEeCCC
Q 024806 181 VAKLIDQALEKGVKVAVCSTSNEKAVTA----IVSFLLGPERAEKIQIFAGDV 229 (262)
Q Consensus 181 v~e~L~~L~~~G~~l~IvTn~~~~~~~~----~L~~~~l~~~f~~~~Iv~s~~ 229 (262)
+..++.--.++|-.++.+|+..+..++. +-+.+.+...-. .++.++-
T Consensus 119 A~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~p--v~f~Gdk 169 (237)
T COG3700 119 ARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNP--VIFAGDK 169 (237)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcc--eeeccCC
Confidence 3455666667899999999986554443 333456655555 5666664
No 253
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=55.26 E-value=24 Score=28.94 Aligned_cols=28 Identities=11% Similarity=0.258 Sum_probs=23.8
Q ss_pred CCCCcc-HHHHHHHHHHCCCeEEEEeCCC
Q 024806 175 LPLRPG-VAKLIDQALEKGVKVAVCSTSN 202 (262)
Q Consensus 175 ~~~~pg-v~e~L~~L~~~G~~l~IvTn~~ 202 (262)
.-++++ +.++++.+++.|+.+++.||+.
T Consensus 49 Pllq~~fl~~l~~~~k~~gi~~~leTnG~ 77 (213)
T PRK10076 49 VLMQAEFATRFLQRLRLWGVSCAIETAGD 77 (213)
T ss_pred HHcCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 345566 6799999999999999999994
No 254
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=54.95 E-value=18 Score=26.36 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=24.3
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCCHHHH
Q 024806 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAV 206 (262)
Q Consensus 178 ~pgv~e~L~~L~~~G~~l~IvTn~~~~~~ 206 (262)
-+++.+.++.++++|.++..+|+.....+
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~s~l 87 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVGSTL 87 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCChH
Confidence 46788999999999999999999975433
No 255
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=53.80 E-value=28 Score=24.61 Aligned_cols=60 Identities=12% Similarity=-0.016 Sum_probs=40.2
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh----cCCCCcccceEEeCCCCC--CCCCCh
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL----LGPERAEKIQIFAGDVVP--RKKPDP 237 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~----~l~~~f~~~~Iv~s~~~~--~~KPdp 237 (262)
-...=|..+.++.|+.-.-|+.|+..+.....+..++.. ++.-|+ .--++-|.| ..||..
T Consensus 18 GkvilG~k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs~ipV~~---y~Gt~~eLG~~cgkpf~ 83 (100)
T COG1911 18 GKVILGSKRTIKSLKLGKAKLIIIASNCPKELKEDIEYYAKLSDIPVYV---YEGTSVELGTVCGKPFR 83 (100)
T ss_pred CCEEEehHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHcCCcEEE---ecCCceeHHhhhCCCce
Confidence 456789999999999877888877777667788777765 333232 123334544 567664
No 256
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=53.77 E-value=8 Score=30.00 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=15.2
Q ss_pred CcEEEEecCccccccCcc
Q 024806 77 PSALLFDCDGVLVDTEKD 94 (262)
Q Consensus 77 ik~viFD~DGTL~d~~~~ 94 (262)
-..+++|+|.||+.+...
T Consensus 6 kl~LVLDLDeTLihs~~~ 23 (156)
T TIGR02250 6 KLHLVLDLDQTLIHTTKD 23 (156)
T ss_pred ceEEEEeCCCCccccccc
Confidence 458999999999988764
No 257
>PLN03190 aminophospholipid translocase; Provisional
Probab=53.69 E-value=27 Score=36.33 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=37.7
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPER 218 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~ 218 (262)
++.+|+.++++.|++.|+++.++|+-....+..+-...++..-
T Consensus 726 ~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA~s~~Ll~~ 768 (1178)
T PLN03190 726 KLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTN 768 (1178)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 7899999999999999999999999988888888777666544
No 258
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=51.85 E-value=14 Score=30.37 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=18.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCHH
Q 024806 181 VAKLIDQALEKGVKVAVCSTSNEK 204 (262)
Q Consensus 181 v~e~L~~L~~~G~~l~IvTn~~~~ 204 (262)
|.++|..|+++ +.+||||+++-.
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~ 23 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLP 23 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HH
T ss_pred CHHHHHHHHhc-CeEEEEcchhHH
Confidence 56899999987 999999999744
No 259
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=51.01 E-value=18 Score=26.42 Aligned_cols=30 Identities=7% Similarity=0.171 Sum_probs=25.2
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHHHH
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAV 206 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~ 206 (262)
--+.+.++++.++++|.++..+|+.....+
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNSTL 88 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCch
Confidence 457789999999999999999999875433
No 260
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=50.79 E-value=34 Score=26.26 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.6
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCCH
Q 024806 178 RPGVAKLIDQALEKGVKVAVCSTSNE 203 (262)
Q Consensus 178 ~pgv~e~L~~L~~~G~~l~IvTn~~~ 203 (262)
.+++.++++.++++|+++.+-||...
T Consensus 74 ~~~l~~ll~~lk~~Gl~i~l~Tg~~~ 99 (147)
T TIGR02826 74 REALLSLLKIFKEKGLKTCLYTGLEP 99 (147)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 36688999999999999999999754
No 261
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=49.04 E-value=24 Score=25.78 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=24.0
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHH
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEK 204 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~ 204 (262)
--+++.+.++.++++|.++..+|+....
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTDDEDS 86 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 3467889999999999999999998754
No 262
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=46.76 E-value=34 Score=35.30 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=37.4
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcc
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~ 220 (262)
-++.+||.+.|+.|++.|+|+-++|+--.+.+..+.-..++.+--.
T Consensus 650 DkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC~Ll~~~m 695 (1151)
T KOG0206|consen 650 DKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSCRLLRQDM 695 (1151)
T ss_pred chhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhhcCCCCCc
Confidence 3678999999999999999999999988777777776665554433
No 263
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=46.67 E-value=1.7e+02 Score=24.23 Aligned_cols=78 Identities=12% Similarity=0.050 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCC-CCCCCCChHHHhhhhhhhhhhhcccCCcc
Q 024806 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV-VPRKKPDPVKICSLTVDIVCNVLKTHAHK 258 (262)
Q Consensus 180 gv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~-~~~~KPdp~~~~~~~~~~a~~~lgv~p~e 258 (262)
-+-+..+.|.+..-+.-|.-+..+-+.+.---.+|...|...-..-++.+ .-.+||+|.+| +.+++.+|++|++
T Consensus 126 ~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvGKP~~~fF-----e~al~~~gv~p~~ 200 (262)
T KOG3040|consen 126 RLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVGKPSPFFF-----ESALQALGVDPEE 200 (262)
T ss_pred HHHHHHHHHHcCCCCeEEEecCceeeeeccccccCchHHHHHhhhccCceEEEecCCCHHHH-----HHHHHhcCCChHH
Confidence 34455666666543444444444332222211233333332100111211 23579999999 8899999999999
Q ss_pred cccC
Q 024806 259 NVLV 262 (262)
Q Consensus 259 ~v~I 262 (262)
+|||
T Consensus 201 aVMI 204 (262)
T KOG3040|consen 201 AVMI 204 (262)
T ss_pred heEE
Confidence 9997
No 264
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=46.66 E-value=32 Score=24.96 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=24.2
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHHHH
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAV 206 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~ 206 (262)
--.++.+.++.++++|.++.++|+.....+
T Consensus 65 ~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l 94 (131)
T PF01380_consen 65 ETRELIELLRFAKERGAPVILITSNSESPL 94 (131)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEEESSTTSHH
T ss_pred cchhhhhhhHHHHhcCCeEEEEeCCCCCch
Confidence 346778899999999999999998874433
No 265
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=46.36 E-value=44 Score=27.38 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=27.7
Q ss_pred CCCCcc-HHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHH
Q 024806 175 LPLRPG-VAKLIDQALEKGVKVAVCSTSN----EKAVTAIVS 211 (262)
Q Consensus 175 ~~~~pg-v~e~L~~L~~~G~~l~IvTn~~----~~~~~~~L~ 211 (262)
.-+.++ +.++++.+++.|+++.+.||+. .+.+..+++
T Consensus 76 Pll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~ 117 (235)
T TIGR02493 76 PLLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLE 117 (235)
T ss_pred cccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHH
Confidence 456677 4599999999999999999993 344454444
No 266
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=44.62 E-value=13 Score=37.53 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=0.0
Q ss_pred cEEEEecCccccccCc
Q 024806 78 SALLFDCDGVLVDTEK 93 (262)
Q Consensus 78 k~viFD~DGTL~d~~~ 93 (262)
.+++||+||||++...
T Consensus 592 RLlfLDyDGTLap~~~ 607 (934)
T PLN03064 592 RLLILGFNATLTEPVD 607 (934)
T ss_pred eEEEEecCceeccCCC
No 267
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=44.44 E-value=39 Score=30.69 Aligned_cols=42 Identities=7% Similarity=0.111 Sum_probs=30.2
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEE-eCCC---HHHHHHHHHHhcCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVC-STSN---EKAVTAIVSFLLGP 216 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~Iv-Tn~~---~~~~~~~L~~~~l~ 216 (262)
.-.+|.+.++|+.+++.|++++|. ||+. .......+..+++.
T Consensus 85 pl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld 130 (404)
T TIGR03278 85 VSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVR 130 (404)
T ss_pred cccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCC
Confidence 457899999999999999999995 9964 33334444444443
No 268
>PLN02382 probable sucrose-phosphatase
Probab=44.30 E-value=24 Score=32.10 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=0.0
Q ss_pred EEEEecCcccccc--CcchHHHHHHHHHHHc
Q 024806 79 ALLFDCDGVLVDT--EKDGHRISFNDTFKEK 107 (262)
Q Consensus 79 ~viFD~DGTL~d~--~~~~~~~a~~~~~~~~ 107 (262)
.|+-|+||||++. ....-...+..++++.
T Consensus 11 lI~sDLDGTLL~~~~~~~~s~~~~~~l~~~~ 41 (413)
T PLN02382 11 MIVSDLDHTMVDHHDPENLSLLRFNALWEAE 41 (413)
T ss_pred EEEEcCCCcCcCCCCccchhHHHHHHHHHHh
No 269
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=43.98 E-value=76 Score=26.15 Aligned_cols=63 Identities=17% Similarity=0.172 Sum_probs=48.2
Q ss_pred CCCCccHH-HHHHHHHHCCCeEEEEeCCCHH-----HHHHHHHHhcCCCCcccceEEeCCCCCCCCCChHHH
Q 024806 175 LPLRPGVA-KLIDQALEKGVKVAVCSTSNEK-----AVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPVKI 240 (262)
Q Consensus 175 ~~~~pgv~-e~L~~L~~~G~~l~IvTn~~~~-----~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPdp~~~ 240 (262)
..++|++. ++.+.+++.|++..|+-..... .++..++.+|+.-.|+ ..+++-+- ..+|.-+-|
T Consensus 58 y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P--~~~CsL~~-~~~p~i~~F 126 (217)
T PF02593_consen 58 YGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFP--KPFCSLEE-NGNPQIDEF 126 (217)
T ss_pred eccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecC--ccccccCC-CCChhHHHH
Confidence 46788887 7778888899999999887666 8889999998888888 67776542 445555555
No 270
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=43.73 E-value=45 Score=27.65 Aligned_cols=29 Identities=7% Similarity=0.101 Sum_probs=24.0
Q ss_pred CCCCccH-HHHHHHHHHCCCeEEEEeCCCH
Q 024806 175 LPLRPGV-AKLIDQALEKGVKVAVCSTSNE 203 (262)
Q Consensus 175 ~~~~pgv-~e~L~~L~~~G~~l~IvTn~~~ 203 (262)
.-+.++. .++++.+++.|+++++.||+..
T Consensus 81 Pll~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 81 AILQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred HhcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4456774 5899999999999999999973
No 271
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=43.05 E-value=55 Score=22.89 Aligned_cols=36 Identities=14% Similarity=0.014 Sum_probs=28.0
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcc
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~ 220 (262)
++.+.++++|..+.++.-. ..+...++..|+.+.|+
T Consensus 66 ~~~~~~~~~~~~~~l~~~~--~~~~~~l~~~~l~~~~~ 101 (108)
T TIGR00377 66 GRYKQVRRVGGQLVLVSVS--PRVARLLDITGLLRIIP 101 (108)
T ss_pred HHHHHHHhcCCEEEEEeCC--HHHHHHHHHhChhheec
Confidence 5566778889888776544 57899999999998886
No 272
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=42.73 E-value=32 Score=26.98 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=25.7
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHHHHHH
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTA 208 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~ 208 (262)
--+.+.++++.++++|.++..+|+.....+..
T Consensus 84 ~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~ 115 (179)
T TIGR03127 84 ETESLVTVAKKAKEIGATVAAITTNPESTLGK 115 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCchHH
Confidence 34678899999999999999999987554433
No 273
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=40.66 E-value=62 Score=22.67 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=28.1
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcc
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~ 220 (262)
.+.+.++++|.++.++.-. ..+...++..|+.+.|+
T Consensus 62 ~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~ 97 (106)
T TIGR02886 62 GRYKKIKNEGGEVIVCNVS--PAVKRLFELSGLFKIIR 97 (106)
T ss_pred HHHHHHHHcCCEEEEEeCC--HHHHHHHHHhCCceEEE
Confidence 5667788899999876433 58899999998888774
No 274
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=40.44 E-value=19 Score=24.20 Aligned_cols=17 Identities=41% Similarity=0.817 Sum_probs=14.6
Q ss_pred CcEEEEecCccccccCc
Q 024806 77 PSALLFDCDGVLVDTEK 93 (262)
Q Consensus 77 ik~viFD~DGTL~d~~~ 93 (262)
.-.|+++-|||.+|++.
T Consensus 38 ~~~l~L~eDGT~VddEe 54 (74)
T smart00266 38 PVTLVLEEDGTIVDDEE 54 (74)
T ss_pred CcEEEEecCCcEEccHH
Confidence 34788999999999887
No 275
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=40.41 E-value=18 Score=28.89 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.4
Q ss_pred CcEEEEecCccccccCc
Q 024806 77 PSALLFDCDGVLVDTEK 93 (262)
Q Consensus 77 ik~viFD~DGTL~d~~~ 93 (262)
.+++++|-||||.....
T Consensus 5 ~k~lflDRDGtin~d~~ 21 (181)
T COG0241 5 QKALFLDRDGTINIDKG 21 (181)
T ss_pred CcEEEEcCCCceecCCC
Confidence 68999999999976555
No 276
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=40.39 E-value=37 Score=24.74 Aligned_cols=26 Identities=23% Similarity=0.274 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCHH
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTSNEK 204 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~~~~ 204 (262)
+.+.++++.++++|.++.++|+....
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 56788999999999999999998743
No 277
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=40.00 E-value=48 Score=28.36 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=24.2
Q ss_pred CCCCccH-HHHHHHHHHCCCeEEEEeCCC
Q 024806 175 LPLRPGV-AKLIDQALEKGVKVAVCSTSN 202 (262)
Q Consensus 175 ~~~~pgv-~e~L~~L~~~G~~l~IvTn~~ 202 (262)
.-+.++. .++++.++++|+.+.+.||+.
T Consensus 136 Pll~~~~l~~l~~~~k~~g~~~~i~TnG~ 164 (295)
T TIGR02494 136 PLLQPEFALALLQACHERGIHTAVETSGF 164 (295)
T ss_pred hhchHHHHHHHHHHHHHcCCcEeeeCCCC
Confidence 4567885 699999999999999999995
No 278
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=39.21 E-value=52 Score=25.61 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcC
Q 024806 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG 215 (262)
Q Consensus 180 gv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l 215 (262)
.+.++++...+.|++++|+|+++ .+...++...-
T Consensus 74 ~Ig~l~~lae~~g~~v~i~~Ggt--~ar~~ik~~~p 107 (158)
T PF01976_consen 74 DIGDLKKLAEKYGYKVYIATGGT--LARKIIKEYRP 107 (158)
T ss_pred chhHHHHHHHHcCCEEEEEcChH--HHHHHHHHhCC
Confidence 57788888899999999999996 77888887633
No 279
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=39.07 E-value=21 Score=24.26 Aligned_cols=17 Identities=41% Similarity=0.653 Sum_probs=14.7
Q ss_pred CcEEEEecCccccccCc
Q 024806 77 PSALLFDCDGVLVDTEK 93 (262)
Q Consensus 77 ik~viFD~DGTL~d~~~ 93 (262)
.-.++.+-|||.+|++.
T Consensus 40 ~~~lvL~eDGT~Vd~Ee 56 (78)
T cd06539 40 LVTLVLEEDGTVVDTEE 56 (78)
T ss_pred CcEEEEeCCCCEEccHH
Confidence 45789999999999887
No 280
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=38.68 E-value=74 Score=22.67 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=29.8
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhc
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLL 214 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~ 214 (262)
++..++.+.++++|+.+..+|..+.+.+...++..+
T Consensus 46 ~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~ 81 (124)
T PF00578_consen 46 PELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG 81 (124)
T ss_dssp HHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT
T ss_pred hHHHHHhhhhccceEEeeecccccccchhhhhhhhc
Confidence 445567778888899999999999888888888875
No 281
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=38.48 E-value=90 Score=27.41 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=33.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCCC---------------------HHHHHHHHHHhcCCCCcccceEEeCC
Q 024806 181 VAKLIDQALEKGVKVAVCSTSN---------------------EKAVTAIVSFLLGPERAEKIQIFAGD 228 (262)
Q Consensus 181 v~e~L~~L~~~G~~l~IvTn~~---------------------~~~~~~~L~~~~l~~~f~~~~Iv~s~ 228 (262)
-.++|++...+|+++.-.|+.. ...+++.|+..|+..-.+ .||+.+
T Consensus 179 KVdLL~y~~~~~l~Viss~GaaaksDPTrv~v~Dis~t~~DPlsR~vRrrLrk~GI~~GIp--VVFS~E 245 (430)
T KOG2018|consen 179 KVDLLEYCYNHGLKVISSTGAAAKSDPTRVNVADISETEEDPLSRSVRRRLRKRGIEGGIP--VVFSLE 245 (430)
T ss_pred hhHHHHHHHHcCCceEeccCccccCCCceeehhhccccccCcHHHHHHHHHHHhccccCCc--eEEecC
Confidence 3578999999999886655542 356788899899998887 455433
No 282
>PRK14129 heat shock protein HspQ; Provisional
Probab=38.41 E-value=28 Score=24.91 Aligned_cols=19 Identities=16% Similarity=-0.013 Sum_probs=14.9
Q ss_pred CCCcEEEEecCccccccCc
Q 024806 75 VLPSALLFDCDGVLVDTEK 93 (262)
Q Consensus 75 ~~ik~viFD~DGTL~d~~~ 93 (262)
-.+++||||+|-+--.+++
T Consensus 17 ~~yrGVV~DVDP~fs~~e~ 35 (105)
T PRK14129 17 LGYLGVVVDIDPEYSLEEP 35 (105)
T ss_pred cCCCeEEEeeCCCcCCCch
Confidence 4688999999988766665
No 283
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=38.30 E-value=70 Score=21.67 Aligned_cols=37 Identities=11% Similarity=0.037 Sum_probs=27.7
Q ss_pred HHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcc
Q 024806 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (262)
Q Consensus 182 ~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~ 220 (262)
.++.+.++++|..+.++ +.+ ..+...++..|+.++|.
T Consensus 60 ~~l~~~~~~~g~~v~i~-~~~-~~~~~~l~~~gl~~~~~ 96 (99)
T cd07043 60 LGAYKRARAAGGRLVLV-NVS-PAVRRVLELTGLDRLFP 96 (99)
T ss_pred HHHHHHHHHcCCeEEEE-cCC-HHHHHHHHHhCcceeee
Confidence 35677788888887665 444 58899999998888775
No 284
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=38.16 E-value=22 Score=24.33 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=14.8
Q ss_pred CcEEEEecCccccccCc
Q 024806 77 PSALLFDCDGVLVDTEK 93 (262)
Q Consensus 77 ik~viFD~DGTL~d~~~ 93 (262)
.-.|+.+-|||.+|++.
T Consensus 39 ~~~lvLeeDGT~Vd~Ee 55 (81)
T cd06537 39 VLTLVLEEDGTAVDSED 55 (81)
T ss_pred ceEEEEecCCCEEccHH
Confidence 35799999999999887
No 285
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.85 E-value=52 Score=22.37 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=19.9
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCC
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTSN 202 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~~ 202 (262)
..+.++++.|+++|+++-++|++.
T Consensus 53 ~~~~~i~~~L~~~G~~~~~~~~~~ 76 (85)
T cd04906 53 EELAELLEDLKSAGYEVVDLSDDE 76 (85)
T ss_pred HHHHHHHHHHHHCCCCeEECCCCH
Confidence 347789999999999998887775
No 286
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=37.05 E-value=39 Score=26.43 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=24.8
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHH
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEK 204 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~ 204 (262)
.--+++.++++.++++|.++..+|+....
T Consensus 112 G~t~~~i~~~~~ak~~Ga~vI~IT~~~~s 140 (177)
T cd05006 112 GNSPNVLKALEAAKERGMKTIALTGRDGG 140 (177)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 34578999999999999999999998643
No 287
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=36.69 E-value=65 Score=22.97 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=29.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcc
Q 024806 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (262)
Q Consensus 181 v~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~ 220 (262)
+.++.+.++.+|.++.++.- ...+...++..|+.+.+.
T Consensus 69 L~~~~~~~~~~g~~~~l~~~--~~~v~~~l~~~~~~~~~~ 106 (117)
T PF01740_consen 69 LVDIIKELRRRGVQLVLVGL--NPDVRRILERSGLIDFIP 106 (117)
T ss_dssp HHHHHHHHHHTTCEEEEESH--HHHHHHHHHHTTGHHHSC
T ss_pred HHHHHHHHHHCCCEEEEEEC--CHHHHHHHHHcCCChhcC
Confidence 34677788899999988633 467888899998887773
No 288
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=36.61 E-value=25 Score=30.10 Aligned_cols=17 Identities=41% Similarity=0.759 Sum_probs=14.4
Q ss_pred CcEEEEecCccccccCc
Q 024806 77 PSALLFDCDGVLVDTEK 93 (262)
Q Consensus 77 ik~viFD~DGTL~d~~~ 93 (262)
.++++||+||||.+...
T Consensus 158 ~~~~~~D~dgtl~~~~~ 174 (300)
T PHA02530 158 PKAVIFDIDGTLAKMGG 174 (300)
T ss_pred CCEEEEECCCcCcCCCC
Confidence 57999999999998654
No 289
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=36.35 E-value=48 Score=24.03 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=22.3
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCC
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSN 202 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~ 202 (262)
--+++.+.++.++++|.++..+|+..
T Consensus 55 ~t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 55 NTEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34678899999999999999999765
No 290
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=36.30 E-value=75 Score=23.22 Aligned_cols=42 Identities=12% Similarity=-0.081 Sum_probs=24.9
Q ss_pred CccHHHHHHHHHHCCC---eEEEEeCCCHHHHHHHHHHhcCCCCcc
Q 024806 178 RPGVAKLIDQALEKGV---KVAVCSTSNEKAVTAIVSFLLGPERAE 220 (262)
Q Consensus 178 ~pgv~e~L~~L~~~G~---~l~IvTn~~~~~~~~~L~~~~l~~~f~ 220 (262)
.+.+.++++.|+++|. ++.+-=+.. ......++.+|++.+|+
T Consensus 64 ~~~~~~~~~~L~~~~~~~i~i~~GG~~~-~~~~~~~~~~G~d~~~~ 108 (122)
T cd02071 64 MTLFPEVIELLRELGAGDILVVGGGIIP-PEDYELLKEMGVAEIFG 108 (122)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCCC-HHHHHHHHHCCCCEEEC
Confidence 4556778888888754 333322233 34456666777776665
No 291
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=35.28 E-value=25 Score=23.87 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=14.1
Q ss_pred cEEEEecCccccccCc
Q 024806 78 SALLFDCDGVLVDTEK 93 (262)
Q Consensus 78 k~viFD~DGTL~d~~~ 93 (262)
-.|+++-|||.+|++.
T Consensus 41 ~~lvL~eDGTeVddEe 56 (78)
T cd01615 41 VTLVLEEDGTEVDDEE 56 (78)
T ss_pred eEEEEeCCCcEEccHH
Confidence 4689999999999887
No 292
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=35.00 E-value=60 Score=27.45 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=23.1
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCC
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSN 202 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~ 202 (262)
.++.+.++++.+++.|+.+++.||+.
T Consensus 97 q~e~~~~~~~~ake~Gl~~~l~TnG~ 122 (260)
T COG1180 97 QAEFALDLLRAAKERGLHVALDTNGF 122 (260)
T ss_pred hHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 45778899999999999999999994
No 293
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=34.77 E-value=1.2e+02 Score=23.73 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=10.7
Q ss_pred HHHHHHHHCCCeEEEEeCCC
Q 024806 183 KLIDQALEKGVKVAVCSTSN 202 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~ 202 (262)
++++.+.+.|.+++++-+.+
T Consensus 39 ~l~~~~~~~~~~ifllG~~~ 58 (172)
T PF03808_consen 39 DLLRRAEQRGKRIFLLGGSE 58 (172)
T ss_pred HHHHHHHHcCCeEEEEeCCH
Confidence 44445555566666664443
No 294
>PRK13937 phosphoheptose isomerase; Provisional
Probab=34.67 E-value=51 Score=26.26 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=24.3
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHH
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEK 204 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~ 204 (262)
--+.+.+.++.++++|.++..+|+....
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~~s 145 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRDGG 145 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4578999999999999999999998644
No 295
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=34.57 E-value=45 Score=25.55 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=24.1
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHH
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEK 204 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~ 204 (262)
--+.+.+.++.++++|.++..+|+....
T Consensus 91 ~t~~~~~~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 91 NSKNVLKAIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 3578889999999999999999997644
No 296
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=34.57 E-value=1.1e+02 Score=23.90 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=17.1
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHH
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSF 212 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~ 212 (262)
++++.+.++|.+++++-+.. +.++...+.
T Consensus 37 ~ll~~~~~~~~~v~llG~~~-~~~~~~~~~ 65 (171)
T cd06533 37 ALLELAAQKGLRVFLLGAKP-EVLEKAAER 65 (171)
T ss_pred HHHHHHHHcCCeEEEECCCH-HHHHHHHHH
Confidence 56666666778888884443 444444333
No 297
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=34.45 E-value=1e+02 Score=30.84 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=46.2
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP 231 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~ 231 (262)
-+..||+.+.++..++.|+.+-.+|+.+-..++.+-...|+..--++..+..+.+++
T Consensus 646 DPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~~~d~~~lEG~eFr 702 (1034)
T KOG0204|consen 646 DPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILTPGGDFLALEGKEFR 702 (1034)
T ss_pred CCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccccCCCccceecchhhh
Confidence 378999999999999999999999999988888888888887665543455555544
No 298
>COG3785 Uncharacterized conserved protein [Function unknown]
Probab=34.44 E-value=33 Score=24.57 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=18.6
Q ss_pred CCCCcEEEEecCccccccCcchHH
Q 024806 74 SVLPSALLFDCDGVLVDTEKDGHR 97 (262)
Q Consensus 74 ~~~ik~viFD~DGTL~d~~~~~~~ 97 (262)
..++.+|+||+|-.-.++++ |+.
T Consensus 25 lfpfrGVV~DvDPeyantee-w~~ 47 (116)
T COG3785 25 LFPFRGVVFDVDPEYANTEE-WPD 47 (116)
T ss_pred hcccceEEEecCcccccCcc-Chh
Confidence 45789999999999888887 443
No 299
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=34.05 E-value=51 Score=21.88 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=19.9
Q ss_pred CccHHHHHHHHHHCCCeEEEEe
Q 024806 178 RPGVAKLIDQALEKGVKVAVCS 199 (262)
Q Consensus 178 ~pgv~e~L~~L~~~G~~l~IvT 199 (262)
-+++.++++.++++|.++..+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4778899999999999999998
No 300
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=33.56 E-value=81 Score=22.03 Aligned_cols=33 Identities=12% Similarity=-0.036 Sum_probs=27.7
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcC
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG 215 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l 215 (262)
.+++.|.++|++++.-+....+...+.++.+|.
T Consensus 43 ~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~ 75 (89)
T PF08444_consen 43 HLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGF 75 (89)
T ss_pred HHHHHHHHCCCCeEeehHhccHHHHHHHHHCCC
Confidence 567788999999999988888888888888754
No 301
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=33.44 E-value=27 Score=23.81 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=14.2
Q ss_pred cEEEEecCccccccCc
Q 024806 78 SALLFDCDGVLVDTEK 93 (262)
Q Consensus 78 k~viFD~DGTL~d~~~ 93 (262)
-.|+++-|||.+|++.
T Consensus 43 ~~lvL~eDGT~VddEe 58 (80)
T cd06536 43 ITLVLAEDGTIVEDED 58 (80)
T ss_pred eEEEEecCCcEEccHH
Confidence 4788999999999887
No 302
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=33.32 E-value=51 Score=25.81 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=25.0
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHHHH
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAV 206 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~ 206 (262)
-.+.+.++++.++++|.++..+|+.....+
T Consensus 87 ~t~~~i~~~~~ak~~g~~iI~IT~~~~s~l 116 (179)
T cd05005 87 ETSSVVNAAEKAKKAGAKVVLITSNPDSPL 116 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCch
Confidence 457788999999999999999999875533
No 303
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=31.85 E-value=1.2e+02 Score=21.36 Aligned_cols=37 Identities=11% Similarity=-0.041 Sum_probs=28.0
Q ss_pred HHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCC-Ccc
Q 024806 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE-RAE 220 (262)
Q Consensus 182 ~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~-~f~ 220 (262)
.++.+.++.+|.++.++--. ..+...++..|+.. .|+
T Consensus 63 ~~~~~~~~~~g~~l~l~g~~--~~v~~~l~~~gl~~~~~~ 100 (109)
T cd07041 63 LRLARALRLLGARTILTGIR--PEVAQTLVELGIDLSGIR 100 (109)
T ss_pred HHHHHHHHHcCCeEEEEeCC--HHHHHHHHHhCCChhhce
Confidence 36677888899999887444 57888999998877 554
No 304
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=31.68 E-value=56 Score=27.60 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=24.5
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCH
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNE 203 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~ 203 (262)
.-+|+..++++.|+++|+++.+..+..-
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 3579999999999999999999888753
No 305
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.08 E-value=27 Score=32.35 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=12.9
Q ss_pred CCcEEEEecCccccc
Q 024806 76 LPSALLFDCDGVLVD 90 (262)
Q Consensus 76 ~ik~viFD~DGTL~d 90 (262)
..|++++|+||||+-
T Consensus 221 ~kK~LVLDLDNTLWG 235 (574)
T COG3882 221 SKKALVLDLDNTLWG 235 (574)
T ss_pred ccceEEEecCCcccc
Confidence 457999999999984
No 306
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=30.34 E-value=67 Score=25.74 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=24.3
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHH
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEK 204 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~ 204 (262)
--+.+.+.++.++++|.++..+|+....
T Consensus 123 ~t~~~i~~~~~ak~~g~~iI~iT~~~~s 150 (192)
T PRK00414 123 NSGNIIKAIEAARAKGMKVITLTGKDGG 150 (192)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3578899999999999999999998643
No 307
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=29.98 E-value=55 Score=27.60 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=16.3
Q ss_pred CCCcEEEEecCccccccCc
Q 024806 75 VLPSALLFDCDGVLVDTEK 93 (262)
Q Consensus 75 ~~ik~viFD~DGTL~d~~~ 93 (262)
+|+|.|++|+||||++...
T Consensus 2 ~~~kli~~DlDGTLl~~~~ 20 (273)
T PRK00192 2 MMKLLVFTDLDGTLLDHHT 20 (273)
T ss_pred CcceEEEEcCcccCcCCCC
Confidence 5799999999999998543
No 308
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=29.76 E-value=90 Score=21.48 Aligned_cols=41 Identities=7% Similarity=0.041 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHC--CCeEEEEeCCCHHHHHHHHHHhcCCCCcc
Q 024806 180 GVAKLIDQALEK--GVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (262)
Q Consensus 180 gv~e~L~~L~~~--G~~l~IvTn~~~~~~~~~L~~~~l~~~f~ 220 (262)
...++++.|++. +.++.++|+..........-..|..+|+.
T Consensus 57 ~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~ 99 (112)
T PF00072_consen 57 DGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLS 99 (112)
T ss_dssp BHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEE
T ss_pred cccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 444788888774 48999999776544444444666655553
No 309
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=29.62 E-value=1e+02 Score=26.40 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=24.3
Q ss_pred CCCCccHHHHHHHHHHCCC-eEEEEeCCC
Q 024806 175 LPLRPGVAKLIDQALEKGV-KVAVCSTSN 202 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~-~l~IvTn~~ 202 (262)
+-+.+++.++++.+++.|+ .+.+.||+.
T Consensus 67 Pll~~~l~~iv~~l~~~g~~~v~i~TNG~ 95 (302)
T TIGR02668 67 PLLRKDLIEIIRRIKDYGIKDVSMTTNGI 95 (302)
T ss_pred cccccCHHHHHHHHHhCCCceEEEEcCch
Confidence 4567889999999999998 899999995
No 310
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=29.56 E-value=1.2e+02 Score=21.85 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=28.4
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcc
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~ 220 (262)
.+++.++..|.++.++...+ .+...+...|+...|.
T Consensus 67 ~~~~~~~~~g~~~~l~~i~p--~v~~~~~~~gl~~~~~ 102 (117)
T COG1366 67 ALLKSARLRGVELVLVGIQP--EVARTLELTGLDKSFI 102 (117)
T ss_pred HHHHHHHhcCCeEEEEeCCH--HHHHHHHHhCchhhcc
Confidence 45667888999998876665 7888999998888773
No 311
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=29.44 E-value=59 Score=25.41 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=17.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCCC
Q 024806 181 VAKLIDQALEKGVKVAVCSTSN 202 (262)
Q Consensus 181 v~e~L~~L~~~G~~l~IvTn~~ 202 (262)
+.+++..|+++|++++++=...
T Consensus 19 ie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 19 IEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred HHHHHHHHHhCCcEEEEEEecC
Confidence 4578889999999999986554
No 312
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.39 E-value=1.1e+02 Score=22.96 Aligned_cols=42 Identities=12% Similarity=-0.118 Sum_probs=25.6
Q ss_pred ccHHHHHHHHHHCCC-eEEEEeCC-CHHHHHHHHHHhcCCCCcc
Q 024806 179 PGVAKLIDQALEKGV-KVAVCSTS-NEKAVTAIVSFLLGPERAE 220 (262)
Q Consensus 179 pgv~e~L~~L~~~G~-~l~IvTn~-~~~~~~~~L~~~~l~~~f~ 220 (262)
+.+.++++.|+++|. .+.|+-++ ....-...++.+|+..+|.
T Consensus 68 ~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~ 111 (132)
T TIGR00640 68 TLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFG 111 (132)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEEC
Confidence 446677888888764 23233342 3344455688888877775
No 313
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=28.99 E-value=2e+02 Score=23.36 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=15.4
Q ss_pred HHHHHHHHHCCCeEEEEeCC
Q 024806 182 AKLIDQALEKGVKVAVCSTS 201 (262)
Q Consensus 182 ~e~L~~L~~~G~~l~IvTn~ 201 (262)
..+++.|++. |+++|++|-
T Consensus 31 e~~~~~L~~~-~~~aVI~~D 49 (202)
T COG0378 31 EKTLRALKDE-YKIAVITGD 49 (202)
T ss_pred HHHHHHHHhh-CCeEEEece
Confidence 4567788877 999999987
No 314
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=28.75 E-value=22 Score=23.86 Aligned_cols=9 Identities=56% Similarity=0.873 Sum_probs=8.2
Q ss_pred EEecCcccc
Q 024806 81 LFDCDGVLV 89 (262)
Q Consensus 81 iFD~DGTL~ 89 (262)
=|||+|.|+
T Consensus 4 RFdf~G~l~ 12 (73)
T PF08620_consen 4 RFDFDGNLL 12 (73)
T ss_pred cccCCCCEe
Confidence 399999999
No 315
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=28.49 E-value=94 Score=25.92 Aligned_cols=55 Identities=11% Similarity=0.047 Sum_probs=34.6
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCC-----CCCCCCChHHH
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV-----VPRKKPDPVKI 240 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~-----~~~~KPdp~~~ 240 (262)
++++...+.++.++++|+.+...+..+++..++ ...| .++++-. ....+|++.--
T Consensus 26 ~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~l-~~Pd--~~I~svGt~I~~~~~~~~d~~w~ 85 (247)
T PF05116_consen 26 ELLEQQARPEILFVYVTGRSLESVLRLLREYNL-PQPD--YIITSVGTEIYYGENWQPDEEWQ 85 (247)
T ss_dssp HHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT--EE-S--EEEETTTTEEEESSTTEE-HHHH
T ss_pred HHHHHhhCCCceEEEECCCCHHHHHHHHHhCCC-CCCC--EEEecCCeEEEEcCCCcChHHHH
Confidence 344434467899999999999999999998866 3456 6777631 12567776543
No 316
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=28.31 E-value=88 Score=23.17 Aligned_cols=28 Identities=46% Similarity=0.673 Sum_probs=24.3
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN 202 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~ 202 (262)
.+.+|-..++++..+++|+++++|.-+-
T Consensus 58 ~~~~~~l~~~~~~a~e~GVk~yvCe~s~ 85 (120)
T COG2044 58 HPNFPPLEELIKQAIEAGVKIYVCEQSL 85 (120)
T ss_pred CCCCCCHHHHHHHHHHcCCEEEEEcchh
Confidence 3567889999999999999999997765
No 317
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=28.07 E-value=38 Score=23.04 Aligned_cols=16 Identities=56% Similarity=0.731 Sum_probs=14.1
Q ss_pred cEEEEecCccccccCc
Q 024806 78 SALLFDCDGVLVDTEK 93 (262)
Q Consensus 78 k~viFD~DGTL~d~~~ 93 (262)
-.|+.+-|||.+|++.
T Consensus 40 ~~lvL~eDGT~Vd~Ee 55 (79)
T cd06538 40 SSLVLDEDGTGVDTEE 55 (79)
T ss_pred cEEEEecCCcEEccHH
Confidence 4689999999999887
No 318
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=27.94 E-value=75 Score=25.98 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=24.5
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN 202 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~ 202 (262)
.-..++..++++.|+++|+++.+=||++
T Consensus 82 P~~~~~l~~Ll~~l~~~g~~~~lETngt 109 (212)
T COG0602 82 PLLQPNLLELLELLKRLGFRIALETNGT 109 (212)
T ss_pred CCCcccHHHHHHHHHhCCceEEecCCCC
Confidence 3345699999999999999999999996
No 319
>PRK13938 phosphoheptose isomerase; Provisional
Probab=27.26 E-value=79 Score=25.52 Aligned_cols=28 Identities=21% Similarity=0.148 Sum_probs=24.0
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHH
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEK 204 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~ 204 (262)
--+.+.+.++.++++|.++..+|+....
T Consensus 125 ~t~~vi~a~~~Ak~~G~~vI~iT~~~~s 152 (196)
T PRK13938 125 NSMSVLRAAKTARELGVTVVAMTGESGG 152 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 3567889999999999999999998744
No 320
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=26.83 E-value=56 Score=25.17 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=30.8
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCC
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV 229 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~ 229 (262)
.++.++=+.|++.|+++.++.+...+.+..+.+.++ .+ .|++..+
T Consensus 53 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~----~~--~V~~~~~ 97 (165)
T PF00875_consen 53 ESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYG----AT--AVYFNEE 97 (165)
T ss_dssp HHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHT----ES--EEEEE--
T ss_pred HHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcC----cC--eeEeccc
Confidence 455567778888899999998888777777777775 34 5566555
No 321
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=26.81 E-value=79 Score=19.90 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=16.1
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCC
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTS 201 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~ 201 (262)
|+-.+-|+.|.+.|++|.|.+-.
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~~ 24 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTYS 24 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--HH
T ss_pred cHHHHHHHHHHHCCCeEEecCcH
Confidence 45568899999999999997543
No 322
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=26.55 E-value=1.6e+02 Score=20.76 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=30.4
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~ 213 (262)
-.+.-|..++++.+++...++.|+++...+.....+..+
T Consensus 15 gkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~ 53 (99)
T PRK01018 15 GKVILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIEYY 53 (99)
T ss_pred CCEEEcHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHH
Confidence 468899999999999877888888877656666666543
No 323
>COG1546 CinA Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only]
Probab=26.42 E-value=1.4e+02 Score=23.31 Aligned_cols=49 Identities=10% Similarity=0.044 Sum_probs=36.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh-cCCCCcccceEEeCCC
Q 024806 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL-LGPERAEKIQIFAGDV 229 (262)
Q Consensus 181 v~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~-~l~~~f~~~~Iv~s~~ 229 (262)
...+.+.|+++|..++.+=.+.-..+...|-.. |-..||+.-.|..+.+
T Consensus 10 a~~v~~~L~~~g~tlatAEScTgGlla~~lt~i~GaS~~f~gg~VtYSne 59 (162)
T COG1546 10 AEAVGELLKERGLTLATAESCTGGLLAAALTDIPGASAVFEGGFVTYSNE 59 (162)
T ss_pred HHHHHHHHHHcCCEEEEEecchhHHHHHHHHcCCCcHHHhCCceEEEcHH
Confidence 346778889999999999888877777777765 6777998744444444
No 324
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=26.29 E-value=56 Score=26.32 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=35.5
Q ss_pred eEEEEeCCCHHHHHHHHHHhcCCCCcccceE---EeCCCCCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 194 KVAVCSTSNEKAVTAIVSFLLGPERAEKIQI---FAGDVVPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 194 ~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~I---v~s~~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
...+.+....+.+...++.++.. +. .. ..-+.......+...+ +.+++.+|++++++++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~ei~~~~~~K~~~i-----~~l~~~~~i~~~~~i~~ 171 (225)
T TIGR01482 109 LVKMRYGIDVDTVREIIKELGLN--LV--AVDSGFDIHILPQGVNKGVAV-----KKLKEKLGIKPGETLVC 171 (225)
T ss_pred eEEEeecCCHHHHHHHHHhcCce--EE--EecCCcEEEEeeCCCCHHHHH-----HHHHHHhCCCHHHEEEE
Confidence 34455555666777777776542 11 11 1112223344555566 78899999999998764
No 325
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.20 E-value=80 Score=27.12 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=23.0
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTS 201 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~ 201 (262)
..+|+..++++.|+++|+++.+..+-
T Consensus 71 ~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 71 KLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred hcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 46899999999999999999987765
No 326
>COG2810 Predicted type IV restriction endonuclease [Defense mechanisms]
Probab=26.14 E-value=77 Score=26.48 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=32.2
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh-cCCCCcccceEEeCCCCC
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL-LGPERAEKIQIFAGDVVP 231 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~-~l~~~f~~~~Iv~s~~~~ 231 (262)
+.-++..++++.-.+|+.++|+||+. ++.+++.+ ++..--+ .|++--+..
T Consensus 82 ~akd~qq~~~Yav~~Gv~~~iVtnGr---vWiV~d~~r~Gk~e~~--qi~T~~d~~ 132 (284)
T COG2810 82 PAKDVQQLAKYAVDKGVEVGIVTNGR---VWIVVDAFRPGKIEQD--QILTWSDSS 132 (284)
T ss_pred chHHHHHHHHHHHhcCcEEEEEeCCe---EEEEEecccCCchhhh--heeeeeccc
Confidence 34567788999999999999999995 34444433 3333333 455544433
No 327
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=25.92 E-value=1.4e+02 Score=21.81 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=27.7
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Q 024806 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (262)
Q Consensus 178 ~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~ 213 (262)
-+.+.+.++.+.++|.++.+-|.+........++.+
T Consensus 77 p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~ 112 (124)
T PF01113_consen 77 PDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEEL 112 (124)
T ss_dssp HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHH
Confidence 356668888999999999999999877777777775
No 328
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=25.82 E-value=2.5e+02 Score=20.23 Aligned_cols=53 Identities=13% Similarity=0.045 Sum_probs=39.2
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCCCCCCCCCC
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPD 236 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~~~~~~KPd 236 (262)
-+...+.+.+++ +-++.++-+.+..-+...++..|+...-+ .+++ |.+..|..
T Consensus 39 ~~~~~~~~~a~~-~~~iIaIDGC~~~Ca~k~le~~g~~~~~~--i~~t--dlgi~k~~ 91 (110)
T PF08859_consen 39 AGVEGLVKSARS-ARPIIAIDGCPLCCAKKILEEAGVKPDEH--IVLT--DLGIKKRK 91 (110)
T ss_pred cCcHHHHHHHhc-CCceEEECCCHHHHHHHHHHHcCCCCceE--EEEe--ecccccCC
Confidence 456666666654 36999999999999999999998887776 5555 44555544
No 329
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=25.69 E-value=41 Score=28.58 Aligned_cols=28 Identities=11% Similarity=-0.094 Sum_probs=20.7
Q ss_pred CeEEEEeCCCHHHHHHHHHHhcCCCCcc
Q 024806 193 VKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (262)
Q Consensus 193 ~~l~IvTn~~~~~~~~~L~~~~l~~~f~ 220 (262)
-++.|+-|++....-+--....+..||+
T Consensus 202 ~~viIiDNsP~sy~~~p~NgIpI~sw~~ 229 (262)
T KOG1605|consen 202 SKVIIVDNSPQSYRLQPENGIPIKSWFD 229 (262)
T ss_pred ccEEEEcCChHHhccCccCCCccccccc
Confidence 4778888888777666666667777776
No 330
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=25.62 E-value=1.7e+02 Score=19.83 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=28.5
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~ 213 (262)
-.+.-|..+.++.+++...++.|+.+...+.+...+..+
T Consensus 10 gkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~ 48 (82)
T PRK13602 10 KSIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKVEAL 48 (82)
T ss_pred CCEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHH
Confidence 467899999999999777777777766555566555433
No 331
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=25.37 E-value=1.8e+02 Score=21.01 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=25.4
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcC
Q 024806 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG 215 (262)
Q Consensus 181 v~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l 215 (262)
+.++++..++.|.++.|+|+.+ +.-+.+++.+|+
T Consensus 71 i~~l~~~a~~~g~~v~iis~~~-e~G~~L~~~~gG 104 (113)
T PF03465_consen 71 IEELIELAEQSGAKVEIISSEH-EEGEQLLKGFGG 104 (113)
T ss_dssp HHHHHHHHHHTTSEEEEE-TTS-HHHHHHHHCTTT
T ss_pred HHHHHHHHHHcCCEEEEEcCCC-ccHHHHHhcCCc
Confidence 6788888999999999999997 444555576654
No 332
>PRK13936 phosphoheptose isomerase; Provisional
Probab=25.18 E-value=89 Score=25.07 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=25.3
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCCHHHHHH
Q 024806 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTA 208 (262)
Q Consensus 178 ~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~ 208 (262)
-+.+.++++.++++|.++..+|+.....+..
T Consensus 124 t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~ 154 (197)
T PRK13936 124 SANVIQAIQAAHEREMHVVALTGRDGGKMAS 154 (197)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCChhhh
Confidence 4678899999999999999999986544443
No 333
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=24.54 E-value=1e+02 Score=20.31 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=20.8
Q ss_pred cEEEEecCccccccCcchHHHHHHHHHHHcc
Q 024806 78 SALLFDCDGVLVDTEKDGHRISFNDTFKEKE 108 (262)
Q Consensus 78 k~viFD~DGTL~d~~~~~~~~a~~~~~~~~g 108 (262)
+-|+.|++|+-.=+... ...++..+..+++
T Consensus 18 ~~V~lDF~gv~~~~ssF-l~eafg~l~~~~~ 47 (74)
T PF14213_consen 18 EKVVLDFEGVESITSSF-LNEAFGQLVREFG 47 (74)
T ss_pred CeEEEECCCcccccHHH-HHHHHHHHHHHcC
Confidence 34999999995545553 5667777777665
No 334
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=24.47 E-value=85 Score=25.78 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=20.4
Q ss_pred CCCCccHHHHHHHHHHC-CCeEEEEeCCCHHH
Q 024806 175 LPLRPGVAKLIDQALEK-GVKVAVCSTSNEKA 205 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~-G~~l~IvTn~~~~~ 205 (262)
..+.+++.++|+.|.+. +..++|+|+.+...
T Consensus 18 ~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~ 49 (235)
T PF02358_consen 18 AVPPPELRELLRALAADPNNTVAIVSGRSLDD 49 (235)
T ss_dssp ----HHHHHHHHHHHHHSE--EEEE-SS-HHH
T ss_pred cCCCHHHHHHHHHHhccCCCEEEEEEeCCHHH
Confidence 56789999999999887 34599999998766
No 335
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.46 E-value=1e+02 Score=25.69 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCCHHH
Q 024806 180 GVAKLIDQALEKGVKVAVCSTSNEKA 205 (262)
Q Consensus 180 gv~e~L~~L~~~G~~l~IvTn~~~~~ 205 (262)
.++|++..|++. |.+.|||.+-...
T Consensus 187 kIEeLi~eLk~~-yTIviVTHnmqQA 211 (253)
T COG1117 187 KIEELITELKKK-YTIVIVTHNMQQA 211 (253)
T ss_pred HHHHHHHHHHhc-cEEEEEeCCHHHH
Confidence 578999999976 9999999997443
No 336
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.45 E-value=89 Score=27.01 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTS 201 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~ 201 (262)
.-+|+..++++.|+++|+++++..+.
T Consensus 67 ~~FPdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 67 TKFPDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred hhCCCHHHHHHHHHHCCCeEEEEECC
Confidence 35789999999999999999997665
No 337
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=24.18 E-value=87 Score=22.89 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=21.5
Q ss_pred CCCccHHHHHHHHHHCCC-eEEEEeC
Q 024806 176 PLRPGVAKLIDQALEKGV-KVAVCST 200 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~-~l~IvTn 200 (262)
-.|..+.++++.+++.|+ +++++|+
T Consensus 96 ~~~~~vv~v~d~~~~aG~~~v~l~t~ 121 (122)
T TIGR02803 96 VDYGDLMKVMNLLRQAGYLKIGLVGL 121 (122)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 467788899999999998 5999886
No 338
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=24.07 E-value=56 Score=26.45 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=35.4
Q ss_pred eEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeC---CCCCCCCCChHHHhhhhhhhhhhhcccCCcccccC
Q 024806 194 KVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAG---DVVPRKKPDPVKICSLTVDIVCNVLKTHAHKNVLV 262 (262)
Q Consensus 194 ~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s---~~~~~~KPdp~~~~~~~~~~a~~~lgv~p~e~v~I 262 (262)
.+.+.++.....+...++.++. .+. .+... +-......++..+ +.+++.+|++++++++|
T Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~--~~~--~~~~~~~~ei~~~~~~Kg~al-----~~l~~~~~i~~~~~i~~ 179 (230)
T PRK01158 117 EVALRRTVPVEEVRELLEELGL--DLE--IVDSGFAIHIKSPGVNKGTGL-----KKLAELMGIDPEEVAAI 179 (230)
T ss_pred eeeecccccHHHHHHHHHHcCC--cEE--EEecceEEEEeeCCCChHHHH-----HHHHHHhCCCHHHEEEE
Confidence 3455666666667777776532 232 22221 1122333445566 78899999999998864
No 339
>PLN02423 phosphomannomutase
Probab=23.95 E-value=1.3e+02 Score=24.97 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=26.9
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVS 211 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~ 211 (262)
.+-|...++|+.|+++ ++++++|+.....+...+.
T Consensus 24 ~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~~~~ 58 (245)
T PLN02423 24 EATPEMLEFMKELRKV-VTVGVVGGSDLSKISEQLG 58 (245)
T ss_pred cCCHHHHHHHHHHHhC-CEEEEECCcCHHHHHHHhc
Confidence 4567889999999987 9999999996554444444
No 340
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=23.95 E-value=55 Score=22.25 Aligned_cols=17 Identities=41% Similarity=0.685 Sum_probs=14.0
Q ss_pred CcEEEEecCccccccCc
Q 024806 77 PSALLFDCDGVLVDTEK 93 (262)
Q Consensus 77 ik~viFD~DGTL~d~~~ 93 (262)
.-.++++=|||.+|.+.
T Consensus 40 ~~~lvL~eDGT~VddEe 56 (78)
T PF02017_consen 40 PVRLVLEEDGTEVDDEE 56 (78)
T ss_dssp TCEEEETTTTCBESSCH
T ss_pred CcEEEEeCCCcEEccHH
Confidence 34678899999999886
No 341
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.76 E-value=3.5e+02 Score=21.02 Aligned_cols=33 Identities=15% Similarity=0.009 Sum_probs=19.6
Q ss_pred HHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCC
Q 024806 184 LIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (262)
Q Consensus 184 ~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~ 216 (262)
.+..+.+.|..+.-+|-.+........+..++.
T Consensus 56 ~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~ 88 (157)
T COG1225 56 LLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT 88 (157)
T ss_pred HHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 334455556666666666666666666666553
No 342
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=23.60 E-value=3.2e+02 Score=22.58 Aligned_cols=72 Identities=10% Similarity=0.085 Sum_probs=31.7
Q ss_pred HHHHHHCCC-eEEEEeCCCHHHHHHHHHHh-cCCCCcccceEEeCCCCCCCC-CChHHHhhhhhhhhhhhcccCC
Q 024806 185 IDQALEKGV-KVAVCSTSNEKAVTAIVSFL-LGPERAEKIQIFAGDVVPRKK-PDPVKICSLTVDIVCNVLKTHA 256 (262)
Q Consensus 185 L~~L~~~G~-~l~IvTn~~~~~~~~~L~~~-~l~~~f~~~~Iv~s~~~~~~K-Pdp~~~~~~~~~~a~~~lgv~p 256 (262)
++.+.+++. .+++-++.+...+-..|... .....++...++-.||+...- .+.......+-+.....+++.+
T Consensus 21 ~~~i~~~~~~~l~lsgG~tp~~~y~~L~~~~~~~~~w~~v~~f~~DEv~~~~~~~~~s~~~~~~~~l~~~~~i~~ 95 (239)
T PRK12358 21 LGYMSKTKRVNLAITAGSTPKGMYEYLITLVKGKAWYDNVHYYNFDEIPFRGKEGEGVTITNLRNLFFTPAGIKE 95 (239)
T ss_pred HHHHHhCCCeEEEECCCCCHHHHHHHHHHHHhcCCCHHHcEEEeccccCCCCccccccHHHHHHHHhcCcCCCCH
Confidence 344444554 55555554444444444432 111124444677788854322 2222211222244555566633
No 343
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=23.54 E-value=2e+02 Score=21.26 Aligned_cols=32 Identities=13% Similarity=-0.053 Sum_probs=17.4
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhc
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLL 214 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~ 214 (262)
++.+.+++.|+.+..++..+...+....+..+
T Consensus 53 ~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~ 84 (149)
T cd03018 53 DSLELFEAAGAEVLGISVDSPFSLRAWAEENG 84 (149)
T ss_pred HHHHHHHhCCCEEEEecCCCHHHHHHHHHhcC
Confidence 44445555566666666555555555555543
No 344
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=23.51 E-value=52 Score=27.90 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=16.2
Q ss_pred CCeEEEEeCCCHHHHHHHHHHh
Q 024806 192 GVKVAVCSTSNEKAVTAIVSFL 213 (262)
Q Consensus 192 G~~l~IvTn~~~~~~~~~L~~~ 213 (262)
-++++|||..+....+++++.+
T Consensus 186 piRtalVTAR~apah~RvI~TL 207 (264)
T PF06189_consen 186 PIRTALVTARSAPAHERVIRTL 207 (264)
T ss_pred ceEEEEEEcCCCchhHHHHHHH
Confidence 4889999988766666666655
No 345
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=23.45 E-value=3e+02 Score=20.01 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=24.9
Q ss_pred cEEEEecCccccccCcchHHHHHHHHHHHccCCCC
Q 024806 78 SALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVT 112 (262)
Q Consensus 78 k~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~ 112 (262)
+.|-.|=+|=|+|... |-.+....++++.|+..+
T Consensus 7 ~~ie~D~eGfL~~~~d-W~e~vA~~lA~~egieLT 40 (109)
T PRK11508 7 KEIETDTEGYLKESSQ-WSEPLAVVIAENEGISLS 40 (109)
T ss_pred EEeeeCCCCCcCChHH-CCHHHHHHHHHHhCCCCC
Confidence 3578899999999776 666666667777777543
No 346
>PRK15468 carboxysome structural protein EutS; Provisional
Probab=23.24 E-value=29 Score=25.03 Aligned_cols=28 Identities=7% Similarity=0.074 Sum_probs=17.4
Q ss_pred CCCChHHHhhhhhhhhhhhcc---cCCccccc
Q 024806 233 KKPDPVKICSLTVDIVCNVLK---THAHKNVL 261 (262)
Q Consensus 233 ~KPdp~~~~~~~~~~a~~~lg---v~p~e~v~ 261 (262)
..|++++|++++++ ....+| +.|.|...
T Consensus 23 a~P~~~iy~klGl~-~~~AIGIlTiTP~E~aI 53 (111)
T PRK15468 23 AHPGEELAKKIGVP-DAGAIGIMTLTPGETAM 53 (111)
T ss_pred cCCcHHHHHHhCCC-ccCceEEEEeCcchHHH
Confidence 56888998777765 334444 35665543
No 347
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=23.23 E-value=2e+02 Score=25.09 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=23.8
Q ss_pred CCCCCccHHHHHHHHHHCCC--eEEEEeCCC
Q 024806 174 LLPLRPGVAKLIDQALEKGV--KVAVCSTSN 202 (262)
Q Consensus 174 ~~~~~pgv~e~L~~L~~~G~--~l~IvTn~~ 202 (262)
++-+.++..++++.+++.+. .+.+.||+.
T Consensus 71 EPllr~dl~~li~~i~~~~~l~~i~itTNG~ 101 (329)
T PRK13361 71 EPLVRRGCDQLVARLGKLPGLEELSLTTNGS 101 (329)
T ss_pred CCCccccHHHHHHHHHhCCCCceEEEEeChh
Confidence 35677899999999998764 789999985
No 348
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=23.21 E-value=1.8e+02 Score=23.17 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=27.7
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCc
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f 219 (262)
.+-..|...|++.++.|... .+...+.++|+....
T Consensus 107 ~l~~~L~~~g~~w~vfTaT~--~lr~~~~rlgl~~~~ 141 (179)
T PF12261_consen 107 ALAQLLAQQGFEWVVFTATR--QLRNLFRRLGLPPTV 141 (179)
T ss_pred HHHHHHHHCCCCEEEEeCCH--HHHHHHHHcCCCcee
Confidence 34567788999999999986 789999999775443
No 349
>COG1852 Uncharacterized conserved protein [Function unknown]
Probab=23.09 E-value=1.3e+02 Score=24.28 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH
Q 024806 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF 212 (262)
Q Consensus 180 gv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~ 212 (262)
.+.++++.-.+.|+++.|+++++ .+..+++.
T Consensus 121 vi~ei~e~ae~~gykvfIvpGgs--~vkkIlKe 151 (209)
T COG1852 121 VIGEIKEIAEKYGYKVFIVPGGS--FVKKILKE 151 (209)
T ss_pred ehHHHHHHHHHhCcEEEEecChH--HHHHHHhh
Confidence 46788888889999999999997 88999986
No 350
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=22.87 E-value=46 Score=26.80 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=11.5
Q ss_pred cEEEEecCcccccc
Q 024806 78 SALLFDCDGVLVDT 91 (262)
Q Consensus 78 k~viFD~DGTL~d~ 91 (262)
..|-||+|||++..
T Consensus 59 ~~v~~D~~GT~m~i 72 (271)
T PF06901_consen 59 HTVTFDFQGTKMVI 72 (271)
T ss_pred eeEEEeccceEEEe
Confidence 37999999998753
No 351
>PF04358 DsrC: DsrC like protein; InterPro: IPR007453 DsrC (P45573 from SWISSPROT) has been observed to co-purify with Desulphovibrio vulgaris dissimilatory sulphite reductase []. However, DsrC appears to be only loosely associated to the sulphite reductase, which suggests that it may not be an integral part of the dissimilatory sulphite reductase. Many proteins in this entry are found in organisms such as Escherichia coli and Haemophilus influenzae which do not contain dissimilatory sulphite reductases but can synthesise assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins []. The strictly conserved cysteine in the C terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds []. Also included in this entry is TusE, a partner to TusBCD in a sulphur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Many proteins in this entry are annotated as the third (gamma) subunit of dissimilatory sulphite reductase ; PDB: 2V4J_F 2A5W_C 1SAU_A 1JI8_A 1YX3_A.
Probab=22.83 E-value=3e+02 Score=19.91 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=23.3
Q ss_pred cEEEEecCccccccCcchHHHHHHHHHHHccCCCC
Q 024806 78 SALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVT 112 (262)
Q Consensus 78 k~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~ 112 (262)
+.|-+|=||=|+|... |-.+....++++.|+..+
T Consensus 7 ~~i~~D~eGfL~~~~d-W~eevA~~lA~~egI~Lt 40 (109)
T PF04358_consen 7 KTIETDEEGFLVDPED-WNEEVAEALAKEEGIELT 40 (109)
T ss_dssp EEEEEETTSEESSGGG---HHHHHHHHHCTT-S--
T ss_pred EEeeeCCCcCcCChHh-CCHHHHHHHHHHcCCCCC
Confidence 5788999999999877 666666667777787743
No 352
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=22.71 E-value=96 Score=25.03 Aligned_cols=29 Identities=7% Similarity=0.241 Sum_probs=24.6
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCCHHHH
Q 024806 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAV 206 (262)
Q Consensus 178 ~pgv~e~L~~L~~~G~~l~IvTn~~~~~~ 206 (262)
-+.+.+.++.+|++|.++..+|+.....+
T Consensus 122 s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l 150 (196)
T PRK10886 122 SRDIVKAVEAAVTRDMTIVALTGYDGGEL 150 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCChh
Confidence 56788999999999999999999875433
No 353
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=22.71 E-value=1.8e+02 Score=24.39 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=17.1
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~ 213 (262)
++++...++|++++++ ++....++...+.+
T Consensus 96 ~ll~~~~~~~~~v~ll-G~~~~v~~~a~~~l 125 (243)
T PRK03692 96 ALMARAGKEGTPVFLV-GGKPEVLAQTEAKL 125 (243)
T ss_pred HHHHHHHhcCCeEEEE-CCCHHHHHHHHHHH
Confidence 4455555667888888 33335455554444
No 354
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=22.70 E-value=1.9e+02 Score=25.52 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=26.7
Q ss_pred CCCCccHHHHHHHHHHCC-CeEEEEeCCCHH
Q 024806 175 LPLRPGVAKLIDQALEKG-VKVAVCSTSNEK 204 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G-~~l~IvTn~~~~ 204 (262)
-+++|||-.+.+.|.+.| .++.-+||++-.
T Consensus 195 r~~ipGV~~~yr~l~~~~~apvfYvSnSPw~ 225 (373)
T COG4850 195 RQVIPGVSAWYRALTNLGDAPVFYVSNSPWQ 225 (373)
T ss_pred cCCCCCHHHHHHHHHhcCCCCeEEecCChhH
Confidence 578999999999999988 899999999743
No 355
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=22.66 E-value=1.6e+02 Score=21.85 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=19.3
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcC
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG 215 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l 215 (262)
.+.+.|+++|+.+.|+++-. ......|+..|+
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG-~~a~~~l~~~GI 87 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIG-PNAYNALKAAGI 87 (121)
T ss_pred HHHHHHHHcCCCEEEECccC-HHHHHHHHHcCc
Confidence 44556666777777766666 345555555544
No 356
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=22.60 E-value=2.2e+02 Score=24.79 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=23.3
Q ss_pred CCCCccHHHHHHHHHH-CCC-eEEEEeCCC
Q 024806 175 LPLRPGVAKLIDQALE-KGV-KVAVCSTSN 202 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~-~G~-~l~IvTn~~ 202 (262)
.-+.+++.++++.+++ .|+ .+.|.||+.
T Consensus 70 Pll~~~l~~li~~i~~~~gi~~v~itTNG~ 99 (334)
T TIGR02666 70 PLLRKDLVELVARLAALPGIEDIALTTNGL 99 (334)
T ss_pred ccccCCHHHHHHHHHhcCCCCeEEEEeCch
Confidence 4567889999999987 578 899999985
No 357
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=22.55 E-value=91 Score=26.30 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=26.2
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHHHH
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTA 208 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~ 208 (262)
.-.+.+.++++.++++|.++.++|+.....+..
T Consensus 186 g~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~ 218 (278)
T PRK11557 186 GERRELNLAADEALRVGAKVLAITGFTPNALQQ 218 (278)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHH
Confidence 345778899999999999999999987444433
No 358
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=22.49 E-value=1e+02 Score=26.87 Aligned_cols=25 Identities=8% Similarity=0.086 Sum_probs=21.4
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCST 200 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn 200 (262)
..+|+..++++.|+++|+++.+..+
T Consensus 63 ~~FPdp~~mi~~L~~~G~kv~~~i~ 87 (319)
T cd06591 63 ERFPDPKAMVRELHEMNAELMISIW 87 (319)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEec
Confidence 4679999999999999999987653
No 359
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=22.47 E-value=1.1e+02 Score=25.11 Aligned_cols=41 Identities=15% Similarity=0.040 Sum_probs=31.6
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcc
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~ 220 (262)
..+.+.|..|.+.|.++.|++++. ......++.+++...+.
T Consensus 20 ~~~~~~i~~l~~~g~~vvvV~g~g-~~~~~~~~~~~~~~~~~ 60 (242)
T PF00696_consen 20 RELADDIALLSQLGIKVVVVHGGG-SFTDELLEKYGIEPKFV 60 (242)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSH-HHHHHHHHHCTHTTSEE
T ss_pred HHHHHHHHHHHhCCCeEEEEECCh-hhcCchHHhccCCcccc
Confidence 345566677778899999998877 78888888887777664
No 360
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=22.39 E-value=1e+02 Score=26.59 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.4
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCST 200 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn 200 (262)
..+|+..++++.|+++|+++++..+
T Consensus 63 ~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 63 DRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEec
Confidence 4689999999999999999999765
No 361
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.32 E-value=1e+02 Score=26.81 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.3
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTS 201 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~ 201 (262)
..+|+..++++.|+++|+++.+.-+.
T Consensus 70 ~~FPdp~~mi~~L~~~g~k~~~~i~P 95 (317)
T cd06599 70 DRFPDPAAFVAKFHERGIRLAPNIKP 95 (317)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 57899999999999999999885554
No 362
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=22.24 E-value=1.1e+02 Score=27.02 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=24.1
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCCHHH
Q 024806 178 RPGVAKLIDQALEKGVKVAVCSTSNEKA 205 (262)
Q Consensus 178 ~pgv~e~L~~L~~~G~~l~IvTn~~~~~ 205 (262)
-+++.+.++.++++|.++..+||.....
T Consensus 105 T~e~i~al~~ak~~Ga~~I~IT~~~~S~ 132 (340)
T PRK11382 105 TEEVIKALELGRACGALTAAFTKRADSP 132 (340)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 4678999999999999999999997443
No 363
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=22.21 E-value=2.3e+02 Score=20.60 Aligned_cols=27 Identities=11% Similarity=0.000 Sum_probs=11.8
Q ss_pred HHHHCCCeEEEEeCCCHHHHHHHHHHh
Q 024806 187 QALEKGVKVAVCSTSNEKAVTAIVSFL 213 (262)
Q Consensus 187 ~L~~~G~~l~IvTn~~~~~~~~~L~~~ 213 (262)
.+++.|+.+..+|..+...+...++..
T Consensus 52 ~~~~~~~~vv~is~d~~~~~~~~~~~~ 78 (140)
T cd03017 52 EFKALGAVVIGVSPDSVESHAKFAEKY 78 (140)
T ss_pred HHHHCCCEEEEEcCCCHHHHHHHHHHh
Confidence 333444444444444444444444443
No 364
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.88 E-value=2.2e+02 Score=23.64 Aligned_cols=45 Identities=7% Similarity=-0.075 Sum_probs=36.1
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCCCCcccceEEeCC
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGD 228 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~~~f~~~~Iv~s~ 228 (262)
.++.-.+..|..+++.++.||-.+.+.+...-+++|+. |+ .+++.
T Consensus 99 D~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rmGW~--f~---w~Ss~ 143 (247)
T COG4312 99 DHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRMGWQ--FP---WVSST 143 (247)
T ss_pred hhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhcCCc--ce---eEecc
Confidence 45556678889999999999999999999999999775 65 44444
No 365
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.79 E-value=1e+02 Score=26.80 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=23.3
Q ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCC
Q 024806 175 LPLRPGVAKLIDQALEKGVKVAVCSTS 201 (262)
Q Consensus 175 ~~~~pgv~e~L~~L~~~G~~l~IvTn~ 201 (262)
...+|+..++++.|+++|+++.+..+.
T Consensus 66 ~~~FPdp~~mi~~L~~~G~k~~~~v~P 92 (317)
T cd06598 66 RKAFPDPAGMIADLAKKGVKTIVITEP 92 (317)
T ss_pred cccCCCHHHHHHHHHHcCCcEEEEEcC
Confidence 356899999999999999999998764
No 366
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=21.78 E-value=1.1e+02 Score=25.99 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=25.3
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCCHHHH
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAV 206 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~ 206 (262)
-.+.+.++++.++++|.++..+|+.....+
T Consensus 199 ~t~~~~~~~~~ak~~g~~ii~IT~~~~s~l 228 (292)
T PRK11337 199 RTSDVIEAVELAKKNGAKIICITNSYHSPI 228 (292)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCChh
Confidence 457799999999999999999999975533
No 367
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=21.77 E-value=2.4e+02 Score=20.46 Aligned_cols=33 Identities=15% Similarity=0.051 Sum_probs=18.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Q 024806 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (262)
Q Consensus 181 v~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~ 213 (262)
+.++.+.+++.|+.+..+|..+...+....+..
T Consensus 45 l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 45 FRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 334444555566666666666655555555544
No 368
>TIGR02097 yccV hemimethylated DNA binding domain. This model describes the small protein from E. coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein. The model also describes a domain in longer eukaryotic proteins.
Probab=21.72 E-value=71 Score=22.88 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=14.8
Q ss_pred CCCcEEEEecCccccccCc
Q 024806 75 VLPSALLFDCDGVLVDTEK 93 (262)
Q Consensus 75 ~~ik~viFD~DGTL~d~~~ 93 (262)
-.+.+||||+|-....++.
T Consensus 15 ~~yrGVI~gwDp~~~~~ee 33 (101)
T TIGR02097 15 FGYRGVVIDVDPEYSNTEE 33 (101)
T ss_pred cCCCEEEEeEChhccCChH
Confidence 3678999999988776665
No 369
>PRK15482 transcriptional regulator MurR; Provisional
Probab=21.71 E-value=1.1e+02 Score=26.06 Aligned_cols=31 Identities=10% Similarity=0.171 Sum_probs=25.8
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCHHHH
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAV 206 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~~~~~~ 206 (262)
.-.+.+.++++.++++|.++..+|+.....+
T Consensus 193 g~t~~~~~~~~~a~~~g~~iI~IT~~~~s~l 223 (285)
T PRK15482 193 GSKKEIVLCAEAARKQGATVIAITSLADSPL 223 (285)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCch
Confidence 4457889999999999999999999875433
No 370
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=21.68 E-value=1.1e+02 Score=26.73 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=22.4
Q ss_pred CCCccHHHHHHHHHHCCCeEEEEeCC
Q 024806 176 PLRPGVAKLIDQALEKGVKVAVCSTS 201 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l~IvTn~ 201 (262)
.-+|+..++++.|+++|+++.+.-+.
T Consensus 68 ~~FPdp~~mi~~Lh~~G~~~~~~i~P 93 (317)
T cd06594 68 ERYPGLDELIEELKARGIRVLTYINP 93 (317)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEecC
Confidence 46799999999999999999877655
No 371
>COG4275 Uncharacterized conserved protein [Function unknown]
Probab=21.45 E-value=49 Score=24.68 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=26.1
Q ss_pred CCcEEEEecCccccccCcchHHHHHHHHHHHccCCC
Q 024806 76 LPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGV 111 (262)
Q Consensus 76 ~ik~viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~ 111 (262)
...+|=||+||+-+-.... .-+|..+++++|++.
T Consensus 44 ~fgAvpfdi~gv~~th~~e--~~sFd~~l~~fgLd~ 77 (143)
T COG4275 44 EFGAVPFDIDGVELTHVGE--RCSFDTMLAKFGLDG 77 (143)
T ss_pred hcCCcceeecceeEEeeee--eecHHHHHHHhCCCc
Confidence 3568999999997655442 347889999999985
No 372
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=21.33 E-value=1.5e+02 Score=18.81 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCC
Q 024806 180 GVAKLIDQALEKGVKVAVCSTSN 202 (262)
Q Consensus 180 gv~e~L~~L~~~G~~l~IvTn~~ 202 (262)
...++++.++++|++...+|+..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCC
Confidence 36789999999999999999986
No 373
>PF13588 HSDR_N_2: Type I restriction enzyme R protein N terminus (HSDR_N); PDB: 3H1T_A.
Probab=21.30 E-value=1e+02 Score=21.95 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=16.9
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCC
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTSN 202 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~~ 202 (262)
.++..+..+++..+.+.+++||+.
T Consensus 68 ~~~~Q~~~Y~~~~~~~~~i~tNG~ 91 (112)
T PF13588_consen 68 KAVEQLKSYARALGAPYGILTNGK 91 (112)
T ss_dssp -SHHHHHHHHHHHT-SEEEEE-SS
T ss_pred HHHHHHHHHHHhCCCCEEEEECCC
Confidence 356667777777789999999996
No 374
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=21.10 E-value=2.6e+02 Score=18.53 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=13.9
Q ss_pred CCCccHHHHHHHHHHCCCeE
Q 024806 176 PLRPGVAKLIDQALEKGVKV 195 (262)
Q Consensus 176 ~~~pgv~e~L~~L~~~G~~l 195 (262)
...|...++...|.+.|+.+
T Consensus 56 R~~~~~~Dv~~Al~~~gi~~ 75 (77)
T smart00576 56 RTEPNLGDVVLALENLGISV 75 (77)
T ss_pred CCCCCHHHHHHHHHHhCccc
Confidence 34566777778888777654
No 375
>PRK02947 hypothetical protein; Provisional
Probab=21.01 E-value=1.1e+02 Score=25.60 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=23.2
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCCC
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTSN 202 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~~ 202 (262)
--+.+.++++.++++|.++..+|+..
T Consensus 118 ~t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 118 RNPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 34678999999999999999999986
No 376
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=20.89 E-value=2.4e+02 Score=19.96 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=23.3
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHH
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSF 212 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~ 212 (262)
+....|++.|+++.+|+-++.+.++...+.
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~ 33 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEGIEKFCEL 33 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHHHHHHHhc
Confidence 446678889999999999987556666654
No 377
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=20.81 E-value=1.3e+02 Score=25.36 Aligned_cols=31 Identities=13% Similarity=0.077 Sum_probs=25.8
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCCHHHHHH
Q 024806 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTA 208 (262)
Q Consensus 178 ~pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~ 208 (262)
-|.+.+.++..+++|.++..+|++....+..
T Consensus 131 T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~ 161 (257)
T cd05007 131 TPYVLGALRYARARGALTIGIACNPGSPLLQ 161 (257)
T ss_pred CHHHHHHHHHHHHCCCeEEEEECCCCChhHH
Confidence 5789999999999999999999987554433
No 378
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=20.66 E-value=2e+02 Score=22.70 Aligned_cols=29 Identities=7% Similarity=0.078 Sum_probs=15.3
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHH
Q 024806 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSF 212 (262)
Q Consensus 183 e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~ 212 (262)
++++...++|++++++-+.+ ..++...+.
T Consensus 39 ~l~~~~~~~~~~vfllG~~~-~v~~~~~~~ 67 (177)
T TIGR00696 39 ELCQRAGKEKLPIFLYGGKP-DVLQQLKVK 67 (177)
T ss_pred HHHHHHHHcCCeEEEECCCH-HHHHHHHHH
Confidence 45555556667777774443 344444443
No 379
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.62 E-value=1.2e+02 Score=26.82 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=21.3
Q ss_pred CCccHHHHHHHHHHCCCeEEEEeCC
Q 024806 177 LRPGVAKLIDQALEKGVKVAVCSTS 201 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~G~~l~IvTn~ 201 (262)
-+|+..++++.|+++|+++.+..+.
T Consensus 83 ~FPdp~~mi~~Lh~~G~kv~l~v~P 107 (340)
T cd06597 83 RWPNPKGMIDELHEQGVKVLLWQIP 107 (340)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEecC
Confidence 4789999999999999999775554
No 380
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=20.37 E-value=1.1e+02 Score=27.70 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=8.3
Q ss_pred HHHHHHHHHH-CCCeEEEEeCC
Q 024806 181 VAKLIDQALE-KGVKVAVCSTS 201 (262)
Q Consensus 181 v~e~L~~L~~-~G~~l~IvTn~ 201 (262)
..+.|..|-+ .|+. .|++|.
T Consensus 84 ~~~vl~~L~~~~~~~-~V~~~~ 104 (429)
T TIGR02765 84 PEDVLPELIKELGVR-TVFLHQ 104 (429)
T ss_pred HHHHHHHHHHHhCCC-EEEEec
Confidence 3444444433 2333 344454
No 381
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=20.21 E-value=2.6e+02 Score=21.24 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=25.3
Q ss_pred CCccHHHHHHHHHHC--CCeEEEEeCCCH--HHHHHHHHHh
Q 024806 177 LRPGVAKLIDQALEK--GVKVAVCSTSNE--KAVTAIVSFL 213 (262)
Q Consensus 177 ~~pgv~e~L~~L~~~--G~~l~IvTn~~~--~~~~~~L~~~ 213 (262)
..+...++++.+++. ++.+.+.||... ......+...
T Consensus 57 ~~~~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~~~~~l~~~ 97 (204)
T cd01335 57 LYPELAELLRRLKKELPGFEISIETNGTLLTEELLKELKEL 97 (204)
T ss_pred ccHhHHHHHHHHHhhCCCceEEEEcCcccCCHHHHHHHHhC
Confidence 344777888888887 899999999864 3334444443
No 382
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=20.18 E-value=2.2e+02 Score=19.03 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=26.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcCC
Q 024806 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (262)
Q Consensus 181 v~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l~ 216 (262)
+.++++.|+++ .+.. ++++.....-++|+.+|+.
T Consensus 28 a~~If~~L~k~-~~~~-l~~~~~~~FGriL~~~gi~ 61 (73)
T PF12990_consen 28 AAEIFERLQKK-SPAA-LRGSNPNHFGRILQKLGIP 61 (73)
T ss_pred HHHHHHHHHHh-Cccc-cccCCHHHHHHHHHHcCCC
Confidence 56888899887 6664 6777778888899988763
No 383
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=20.11 E-value=2.2e+02 Score=23.60 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=30.8
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcC
Q 024806 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG 215 (262)
Q Consensus 179 pgv~e~L~~L~~~G~~l~IvTn~~~~~~~~~L~~~~l 215 (262)
-++..+-+.|++.|+++.+..|.+...++..++.+.-
T Consensus 30 ~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~ 66 (241)
T smart00115 30 VDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAE 66 (241)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHh
Confidence 3567777788889999999999999999998887743
Done!