Query 024808
Match_columns 262
No_of_seqs 190 out of 411
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 14:46:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rls_A YAF9, protein AF-9 homo 100.0 2E-54 6.9E-59 373.9 16.4 151 44-194 1-168 (175)
2 3qrl_A Transcription initiatio 100.0 2.5E-37 8.4E-42 259.0 14.3 127 47-189 8-139 (140)
3 2gjd_A Ubiquitin-conjugating e 37.5 74 0.0025 25.7 6.2 34 69-102 36-69 (157)
4 3rcz_B SUMO-conjugating enzyme 36.0 74 0.0025 26.0 6.1 33 70-102 43-75 (163)
5 2grr_A Ubiquitin-conjugating e 31.4 1E+02 0.0034 25.0 6.1 35 68-102 38-72 (161)
6 3h8k_A Ubiquitin-conjugating e 28.7 99 0.0034 24.9 5.6 34 69-102 31-64 (164)
7 2onu_A Ubiquitin-conjugating e 27.9 1.1E+02 0.0037 24.7 5.7 34 69-102 26-59 (152)
8 1i7k_A Ubiquitin-conjugating e 27.3 66 0.0022 26.9 4.4 34 69-102 57-90 (179)
9 1zdn_A Ubiquitin-conjugating e 26.6 1.1E+02 0.0037 24.7 5.5 34 69-102 40-73 (158)
10 2aak_A UBC1, ubiquitin conjuga 26.1 1.2E+02 0.0042 24.1 5.7 34 69-102 31-64 (152)
11 3rz3_A Ubiquitin-conjugating e 24.3 1.3E+02 0.0044 24.9 5.6 35 68-102 34-68 (183)
12 2fo3_A Ubiquitin-conjugating e 23.7 1.4E+02 0.0048 23.0 5.5 34 69-102 33-66 (125)
13 2h2y_A Ubiquitin-conjugating e 23.5 1.4E+02 0.0048 23.5 5.5 34 69-102 47-80 (136)
14 1jat_A Ubiquitin-conjugating e 22.2 1.6E+02 0.0053 23.6 5.6 34 69-102 32-65 (155)
15 1ayz_A UBC2, ubiquitin-conjuga 21.6 1.6E+02 0.0055 24.1 5.7 34 69-102 31-64 (169)
16 4gpr_A Ubiquitin-conjugating e 21.2 1.5E+02 0.0052 23.6 5.3 34 69-102 31-64 (151)
17 2a7l_A Hypothetical ubiquitin- 20.9 2.1E+02 0.0072 22.6 6.1 35 68-102 50-84 (136)
18 1fxt_A Ubiquitin-conjugating e 20.5 1.9E+02 0.0066 22.8 5.8 34 69-102 29-62 (149)
19 2e2c_A Ubiquitin conjugating e 20.4 1.7E+02 0.0057 23.4 5.4 34 69-102 36-69 (156)
20 1z2u_A Ubiquitin-conjugating e 20.1 1.9E+02 0.0064 22.9 5.7 34 69-102 31-64 (150)
21 2bep_A Ubiquitin-conjugating e 20.1 1.9E+02 0.0064 23.2 5.7 34 69-102 38-71 (159)
22 2r0j_A Ubiquitin carrier prote 20.0 1.9E+02 0.0065 22.9 5.7 34 69-102 28-61 (149)
No 1
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=100.00 E-value=2e-54 Score=373.91 Aligned_cols=151 Identities=43% Similarity=0.833 Sum_probs=134.7
Q ss_pred eeeeEEEEeEEEccceEEcCC----CCCCCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCCCcccccCCCcEEEeee
Q 024808 44 LKDVEISIPIVYGNVAFWLGK----KASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESG 119 (262)
Q Consensus 44 ~k~~~I~~pIv~Gn~a~~l~k----k~~e~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~G 119 (262)
|||++|++||||||+|++|++ ++++++||+|+|||||++++|+++||+||+|+|||||+||+|+|++|||+|+|+|
T Consensus 1 vk~v~i~kpIv~Gn~a~~l~~~~~~~~~~~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~np~Rvv~~PPFevtE~G 80 (175)
T 3rls_A 1 IKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPNPVRSIEAPPFELTETG 80 (175)
T ss_dssp CCCCCEEEEEEEEEEEEECCSCCCTTCCTTCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSSCEEEECSSSEEEEEEE
T ss_pred CCceEEEeCEEEcceeEECCccccCCCCCCCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCCCcEEEeCCCCEEEEeE
Confidence 689999999999999999986 3667899999999999999999999999999999999999999999999999999
Q ss_pred EEeEEEEEEEEEeecCCCCCEEEEEeeccCCCCCCC-------C------CCCCCCeEEEeeeEEEecCCCHHHHHHHhc
Q 024808 120 WGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESG-------S------MSTKKPVVVESYDEIVFPEPSDSFLARVQN 186 (262)
Q Consensus 120 WGEF~I~I~I~F~~d~~ekp~~i~H~L~L~~~~~~~-------~------~~~~~pVv~E~ydeIvF~nPse~f~~~L~~ 186 (262)
||||+|.|+|||++++++|+++|.|+|+|++++... . ..+++||++|+||||||+||+|+||++|++
T Consensus 81 WGeF~i~I~i~F~~~~~ek~i~i~H~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~se~ydEivF~ePte~f~~~L~~ 160 (175)
T 3rls_A 81 WGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMS 160 (175)
T ss_dssp SSCCEEEEEEEECGGGCCCCEEEEEECCCCC-----------------------CCEEEEEEEEEEESSCCHHHHHHHHH
T ss_pred EeeEEEEEEEEEeCCCCCccEEEEEEEEecCCCCccccccccccccccccccCCCceEEEEeccEEEeCCCHHHHHHHHh
Confidence 999999999999988899999999999999986441 1 124789999999999999999999999999
Q ss_pred CCCccCCC
Q 024808 187 HPAVTLPR 194 (262)
Q Consensus 187 ~p~~~~~~ 194 (262)
+|+.++|.
T Consensus 161 ~p~~~lp~ 168 (175)
T 3rls_A 161 RPGNLLPS 168 (175)
T ss_dssp STTCCSCS
T ss_pred CCCccCCC
Confidence 99876553
No 2
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=100.00 E-value=2.5e-37 Score=259.01 Aligned_cols=127 Identities=20% Similarity=0.486 Sum_probs=108.6
Q ss_pred eEEEEeEEEccceEEcCCCC--CCCCeeeEE--EEEeCCCCCCcc-cceeeeEEEeCCCCCCCcccccCCCcEEEeeeEE
Q 024808 47 VEISIPIVYGNVAFWLGKKA--SEYQSHKWT--VYVRGATNEDLG-VVIKRAVFQLHSSFNNPTRAVESPPFELSESGWG 121 (262)
Q Consensus 47 ~~I~~pIv~Gn~a~~l~kk~--~e~~tH~Wt--VyVr~~~~edls-~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~GWG 121 (262)
++..+.|+.+.. .+++.. .+.++|+|+ |||||.++++++ +||+||+|+|||||+||+|+|++|||+|+|+|||
T Consensus 8 vkrtvr~~T~Q~--~~~~~~~~eg~~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~np~r~v~~pPF~v~e~GWG 85 (140)
T 3qrl_A 8 VKRTIRIKTQQH--ILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWG 85 (140)
T ss_dssp EEEEEEEEEEEE--ECTTSCCBTTBCCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSSCEEEECSTTCCEEEEESS
T ss_pred eEEEEEEEEeee--eCCCCCCCCCCcccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCCCeEEEcCCCcEEEEEEee
Confidence 444455555554 555543 345779999 899999999885 8999999999999999999999999999999999
Q ss_pred eEEEEEEEEEeecCCCCCEEEEEeeccCCCCCCCCCCCCCCeEEEeeeEEEecCCCHHHHHHHhcCCC
Q 024808 122 EFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVVESYDEIVFPEPSDSFLARVQNHPA 189 (262)
Q Consensus 122 EF~I~I~I~F~~d~~ekp~~i~H~L~L~~~~~~~~~~~~~pVv~E~ydeIvF~nPse~f~~~L~~~p~ 189 (262)
||+|.|+|||++++ ++++|.|+|+|+++. ++.+++|+|+||+++|+++|++.++
T Consensus 86 eF~i~I~i~f~~~~--~~~~i~H~L~f~~~~------------y~~~h~i~f~np~~~l~~~L~~~Gp 139 (140)
T 3qrl_A 86 GFPLDISVFLLEKA--GERKIPHDLNFLQES------------YEVEHVIQIPLNKPLLTEELAKSGS 139 (140)
T ss_dssp CCCEEEEEEEGGGT--EEEEEEECCCSSSSE------------EEEEEEEEEESCSHHHHHHHTTTSC
T ss_pred eEEEEEEEEEecCC--CcEEEEEEEEeCCCC------------CcceEEEEECCCCHHHHHHHHHhCC
Confidence 99999999998754 468999999999754 6778999999999999999999775
No 3
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=37.47 E-value=74 Score=25.67 Aligned_cols=34 Identities=9% Similarity=0.222 Sum_probs=24.8
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
.....|.+.+.|+.+.....=+=++.+.+.+.|+
T Consensus 36 ~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP 69 (157)
T 2gjd_A 36 MDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYP 69 (157)
T ss_dssp EEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTT
T ss_pred CcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCC
Confidence 4789999999998765543334557777778776
No 4
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=36.02 E-value=74 Score=26.02 Aligned_cols=33 Identities=9% Similarity=0.231 Sum_probs=25.9
Q ss_pred CeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 70 QSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 70 ~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
....|.+-+.|+.+.....=+=++.+.+-+.|+
T Consensus 43 nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP 75 (163)
T 3rcz_B 43 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYP 75 (163)
T ss_dssp EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CccEEEEEEECCCCCCcCCCEEEEEEECCCCCC
Confidence 789999999998776555555667777888886
No 5
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=31.42 E-value=1e+02 Score=24.95 Aligned_cols=35 Identities=6% Similarity=0.159 Sum_probs=24.9
Q ss_pred CCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 68 EYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 68 e~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
+.....|.+.+.|+.+.....=+=++...+.+.|+
T Consensus 38 ~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 72 (161)
T 2grr_A 38 TMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYP 72 (161)
T ss_dssp CEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CCCccEEEEEEECCCCCCccCCEEEEEEEcCcccC
Confidence 45789999999998765443334466777777776
No 6
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=28.70 E-value=99 Score=24.93 Aligned_cols=34 Identities=9% Similarity=0.254 Sum_probs=26.2
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
+....|.+.+.|+.+.....=+=++.+.+-+.|+
T Consensus 31 ~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP 64 (164)
T 3h8k_A 31 ENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 64 (164)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCC
Confidence 4678999999998776655555667788888886
No 7
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=27.90 E-value=1.1e+02 Score=24.65 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=24.4
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
+....|.+-+.|+.+.....=+=++.+.+.+.|+
T Consensus 26 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 59 (152)
T 2onu_A 26 GSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYP 59 (152)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CccceEEEEEECCCCCcccceEEEEEEcCcccCC
Confidence 5789999999998765544444456666677776
No 8
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=27.31 E-value=66 Score=26.89 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=24.9
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
+....|.+.+.|+.+.....=+=++.+.+.+.|+
T Consensus 57 ~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP 90 (179)
T 1i7k_A 57 DNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYP 90 (179)
T ss_dssp TEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTT
T ss_pred CcccccEEEEECCCCCCcCCCEEEEEEECCCcCC
Confidence 4789999999998765544445566677777776
No 9
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=26.58 E-value=1.1e+02 Score=24.70 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=23.9
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
+....|.+.+.|+.+.....=+=++.+.+.+.|+
T Consensus 40 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 73 (158)
T 1zdn_A 40 EDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFP 73 (158)
T ss_dssp SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CChhheeEEEECCCCCCccCcEEEEEEEcCCCCC
Confidence 4688999999998765443334456666777776
No 10
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=26.12 E-value=1.2e+02 Score=24.12 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=24.7
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
+....|.+.+.|+.+.....=+=++.+.+.+.|+
T Consensus 31 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 64 (152)
T 2aak_A 31 NNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYP 64 (152)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CCccEEEEEEeCCCCCCccCCEEEEEEECCCCCC
Confidence 4788999999998765544345566777778876
No 11
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=24.30 E-value=1.3e+02 Score=24.93 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=26.2
Q ss_pred CCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 68 EYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 68 e~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
++....|.+.+.|+.+.....=+=++.+.+-+.|+
T Consensus 34 ~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP 68 (183)
T 3rz3_A 34 EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYP 68 (183)
T ss_dssp TCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred ccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCC
Confidence 45788999999998776554445567777788886
No 12
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=23.72 E-value=1.4e+02 Score=23.01 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=23.5
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
+....|.+-+.|+.+.....=+=++.+.+-+.|+
T Consensus 33 ~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP 66 (125)
T 2fo3_A 33 NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 66 (125)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred chhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCC
Confidence 5688999999998765543334456666667775
No 13
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=23.46 E-value=1.4e+02 Score=23.49 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=23.9
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
+....|.+.+.|+.+.....=+=++.+.+.+.|+
T Consensus 47 ~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP 80 (136)
T 2h2y_A 47 SNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYP 80 (136)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred ccccccEEEEECCCCCceeCCEEEEEEEeCCCCC
Confidence 4688999999998765543334456666677775
No 14
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=22.23 E-value=1.6e+02 Score=23.59 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=24.3
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
+....|.+.+.|+.+.....=+=++.+.+.+.|+
T Consensus 32 ~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP 65 (155)
T 1jat_A 32 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYP 65 (155)
T ss_dssp TEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTT
T ss_pred CchhEEEEEEECCCCCCccCcEEEEEEEcCCCCC
Confidence 4788999999998765544445556666777776
No 15
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=21.65 E-value=1.6e+02 Score=24.11 Aligned_cols=34 Identities=9% Similarity=0.229 Sum_probs=23.7
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
+....|.+.+.|+.+.....=+=++.+.+-+.|+
T Consensus 31 ~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP 64 (169)
T 1ayz_A 31 DNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYP 64 (169)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CccccceEEEECCCCCCcCCCEEEEEEECcccCC
Confidence 4688999999998765543334456666677775
No 16
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=21.19 E-value=1.5e+02 Score=23.56 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=25.5
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
+....|.+-+.|+.+.....=+=++.+.+-+.|+
T Consensus 31 ~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 64 (151)
T 4gpr_A 31 DDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYP 64 (151)
T ss_dssp SCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTT
T ss_pred CCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCC
Confidence 4688999999998776555455567777777776
No 17
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=20.94 E-value=2.1e+02 Score=22.61 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=24.5
Q ss_pred CCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 68 EYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 68 e~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
++....|.+.+.|+.+.....=+=++.+.+-+.|+
T Consensus 50 ~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP 84 (136)
T 2a7l_A 50 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 84 (136)
T ss_dssp CCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTT
T ss_pred ccccceeEEEEECCCCCccccEEEEEEEECCCCCC
Confidence 45789999999998765543334456666667775
No 18
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=20.51 E-value=1.9e+02 Score=22.82 Aligned_cols=34 Identities=6% Similarity=-0.082 Sum_probs=23.8
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
+....|.+.+.|+.+.....=+=++.+.+.+.|+
T Consensus 29 ~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP 62 (149)
T 1fxt_A 29 SDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 62 (149)
T ss_dssp SCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTT
T ss_pred CCceEEEEEEECCCCCCcCCcEEEEEEECCCCCC
Confidence 3688999999998765543334456666777776
No 19
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=20.36 E-value=1.7e+02 Score=23.44 Aligned_cols=34 Identities=12% Similarity=0.274 Sum_probs=24.3
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
+....|.+.+.|+.+.....=+=++.+.+.+.|+
T Consensus 36 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 69 (156)
T 2e2c_A 36 DNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYP 69 (156)
T ss_dssp SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CCccEEEEEEECCCCCCcCCcEEEEEEECCCCCC
Confidence 4778999999998765543334466777777776
No 20
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=20.14 E-value=1.9e+02 Score=22.91 Aligned_cols=34 Identities=6% Similarity=0.147 Sum_probs=24.3
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
+....|.+.+.|+.+.....=+=++.+.+-+.|+
T Consensus 31 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 64 (150)
T 1z2u_A 31 DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 64 (150)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CcceEEEEEEECCCCCCcCCCEEEEEEECCCCCC
Confidence 4789999999998765544444456666777775
No 21
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=20.12 E-value=1.9e+02 Score=23.19 Aligned_cols=34 Identities=3% Similarity=-0.030 Sum_probs=24.3
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
+....|.+.+.|+.+.....=+=++.+.+-+.|+
T Consensus 38 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 71 (159)
T 2bep_A 38 ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 71 (159)
T ss_dssp SSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CchheEEEEEECCCCCCccCCEEEEEEeCCCcCC
Confidence 4688999999998765543334457777777776
No 22
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=20.03 E-value=1.9e+02 Score=22.90 Aligned_cols=34 Identities=6% Similarity=0.108 Sum_probs=24.5
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024808 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (262)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (262)
+....|.+.+.|+.+.....=+=++.+.+-+.|+
T Consensus 28 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 61 (149)
T 2r0j_A 28 ENYRHFNILINGPDGTPYEGGTYKLELFLPEQYP 61 (149)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CcccEEEEEEECCCCCCcCCCEEEEEEeCCcccC
Confidence 4789999999998765544445556667777776
Done!