Query 024811
Match_columns 262
No_of_seqs 248 out of 2106
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:34:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05891 Methyltransf_PK: AdoM 100.0 3.1E-36 6.7E-41 263.1 4.7 153 102-262 2-154 (218)
2 PRK09489 rsmC 16S ribosomal RN 99.8 6.9E-18 1.5E-22 158.1 13.9 205 34-262 75-296 (342)
3 COG2226 UbiE Methylase involve 99.7 1.9E-17 4.1E-22 147.7 11.0 98 157-262 51-149 (238)
4 KOG3178 Hydroxyindole-O-methyl 99.7 1.5E-17 3.2E-22 154.1 9.0 147 102-262 116-268 (342)
5 PLN02396 hexaprenyldihydroxybe 99.7 3.2E-17 6.9E-22 152.4 10.7 98 157-262 131-228 (322)
6 PLN02233 ubiquinone biosynthes 99.7 5.7E-17 1.2E-21 146.3 11.1 102 156-262 72-175 (261)
7 PF13649 Methyltransf_25: Meth 99.7 8.7E-18 1.9E-22 129.7 4.9 94 161-262 1-100 (101)
8 PF08241 Methyltransf_11: Meth 99.7 2.8E-17 6.1E-22 122.8 7.3 90 162-262 1-90 (95)
9 PF01209 Ubie_methyltran: ubiE 99.7 1.1E-17 2.5E-22 148.9 5.4 98 157-262 47-146 (233)
10 PTZ00098 phosphoethanolamine N 99.7 2.1E-16 4.6E-21 142.8 11.9 136 110-262 14-149 (263)
11 COG2227 UbiG 2-polyprenyl-3-me 99.7 2.4E-17 5.1E-22 146.1 5.3 96 157-262 59-154 (243)
12 PRK11207 tellurite resistance 99.7 1.3E-16 2.9E-21 138.1 9.5 98 157-262 30-127 (197)
13 COG2813 RsmC 16S RNA G1207 met 99.7 6.2E-16 1.4E-20 141.3 13.5 208 35-262 37-259 (300)
14 PLN02244 tocopherol O-methyltr 99.7 4.9E-16 1.1E-20 145.3 12.5 100 156-262 117-216 (340)
15 PF12847 Methyltransf_18: Meth 99.7 1.8E-16 3.8E-21 123.3 7.7 99 158-262 2-104 (112)
16 PRK05785 hypothetical protein; 99.6 7.7E-16 1.7E-20 136.3 10.3 89 157-261 51-139 (226)
17 PRK14103 trans-aconitate 2-met 99.6 4E-16 8.7E-21 139.6 8.0 90 157-262 29-119 (255)
18 KOG1270 Methyltransferases [Co 99.6 1E-15 2.2E-20 137.1 8.6 95 158-262 90-188 (282)
19 PRK11036 putative S-adenosyl-L 99.6 9.4E-16 2E-20 137.3 7.9 98 157-262 44-142 (255)
20 PF13847 Methyltransf_31: Meth 99.6 1.2E-15 2.7E-20 126.0 7.8 97 157-262 3-103 (152)
21 PRK01683 trans-aconitate 2-met 99.6 1.4E-15 3E-20 135.8 8.1 93 156-262 30-123 (258)
22 PRK15451 tRNA cmo(5)U34 methyl 99.6 5E-15 1.1E-19 132.4 11.7 99 157-262 56-157 (247)
23 PRK10258 biotin biosynthesis p 99.6 1.2E-15 2.6E-20 135.9 7.5 92 157-262 42-133 (251)
24 PRK15001 SAM-dependent 23S rib 99.6 3E-14 6.5E-19 135.1 16.8 205 35-262 106-333 (378)
25 TIGR03587 Pse_Me-ase pseudamin 99.6 5.7E-15 1.2E-19 128.9 10.7 92 157-260 43-135 (204)
26 TIGR00477 tehB tellurite resis 99.6 2.4E-15 5.1E-20 130.1 8.1 97 157-262 30-126 (195)
27 PF08242 Methyltransf_12: Meth 99.6 5.2E-17 1.1E-21 124.5 -2.6 95 162-262 1-96 (99)
28 TIGR02752 MenG_heptapren 2-hep 99.6 9.7E-15 2.1E-19 128.1 10.3 99 156-262 44-144 (231)
29 PF02353 CMAS: Mycolic acid cy 99.6 1.4E-14 3.1E-19 131.9 9.9 119 132-262 40-159 (273)
30 TIGR00740 methyltransferase, p 99.6 1.3E-14 2.9E-19 128.5 9.4 99 157-262 53-154 (239)
31 PRK06202 hypothetical protein; 99.6 4.6E-15 9.9E-20 130.9 6.3 96 157-261 60-160 (232)
32 PLN02336 phosphoethanolamine N 99.6 2.1E-14 4.7E-19 139.1 11.5 98 156-262 265-362 (475)
33 PRK12335 tellurite resistance 99.6 1.2E-14 2.6E-19 132.7 8.9 96 158-262 121-216 (287)
34 COG4106 Tam Trans-aconitate me 99.5 9.5E-15 2E-19 127.8 7.3 93 155-262 28-122 (257)
35 PF05401 NodS: Nodulation prot 99.5 8.8E-15 1.9E-19 126.6 6.4 96 157-262 43-139 (201)
36 COG2230 Cfa Cyclopropane fatty 99.5 4.7E-14 1E-18 128.5 10.6 101 154-262 69-169 (283)
37 TIGR03840 TMPT_Se_Te thiopurin 99.5 5.6E-14 1.2E-18 123.6 10.1 105 157-262 34-145 (213)
38 PLN02336 phosphoethanolamine N 99.5 4.7E-14 1E-18 136.7 10.3 97 157-262 37-135 (475)
39 PRK11873 arsM arsenite S-adeno 99.5 4.3E-14 9.4E-19 127.4 8.5 99 156-262 76-176 (272)
40 PF03848 TehB: Tellurite resis 99.5 3.6E-14 7.7E-19 123.0 7.3 97 157-262 30-126 (192)
41 TIGR02072 BioC biotin biosynth 99.5 6.2E-14 1.3E-18 122.0 8.8 93 158-262 35-128 (240)
42 PRK15068 tRNA mo(5)U34 methylt 99.5 4.9E-14 1.1E-18 131.1 8.5 98 157-262 122-219 (322)
43 PF13489 Methyltransf_23: Meth 99.5 3.1E-14 6.7E-19 116.6 6.0 98 140-262 11-108 (161)
44 TIGR02021 BchM-ChlM magnesium 99.5 1.3E-13 2.8E-18 120.5 10.1 97 157-262 55-151 (219)
45 PRK07580 Mg-protoporphyrin IX 99.5 1.6E-13 3.5E-18 119.8 10.3 96 157-261 63-158 (230)
46 TIGR00452 methyltransferase, p 99.5 7.9E-14 1.7E-18 129.3 8.7 98 157-262 121-218 (314)
47 PRK08317 hypothetical protein; 99.5 3.3E-13 7E-18 117.1 11.0 99 155-262 17-117 (241)
48 smart00828 PKS_MT Methyltransf 99.5 2.5E-13 5.4E-18 118.6 10.0 95 160-262 2-97 (224)
49 KOG1540 Ubiquinone biosynthesi 99.5 1.6E-13 3.5E-18 122.6 8.6 116 139-262 85-207 (296)
50 PLN02585 magnesium protoporphy 99.5 2.6E-13 5.6E-18 126.0 9.6 97 157-258 144-240 (315)
51 PLN02490 MPBQ/MSBQ methyltrans 99.5 1.8E-13 3.9E-18 128.1 8.6 95 157-262 113-208 (340)
52 PF05175 MTS: Methyltransferas 99.4 4.7E-13 1E-17 113.2 9.7 115 133-262 14-133 (170)
53 TIGR02081 metW methionine bios 99.4 3.7E-13 8E-18 115.8 8.6 90 157-261 13-104 (194)
54 PRK13255 thiopurine S-methyltr 99.4 8.8E-13 1.9E-17 116.4 11.2 105 157-262 37-148 (218)
55 PRK11705 cyclopropane fatty ac 99.4 6.8E-13 1.5E-17 126.2 11.2 96 155-262 165-260 (383)
56 smart00138 MeTrc Methyltransfe 99.4 4.2E-13 9.1E-18 121.5 8.5 106 157-262 99-235 (264)
57 PRK00107 gidB 16S rRNA methylt 99.4 1.7E-12 3.6E-17 112.1 11.2 93 157-262 45-138 (187)
58 PRK00216 ubiE ubiquinone/menaq 99.4 1.1E-12 2.5E-17 114.3 8.8 99 157-262 51-151 (239)
59 PRK06922 hypothetical protein; 99.4 1.4E-12 3E-17 130.2 10.1 99 157-262 418-530 (677)
60 TIGR00138 gidB 16S rRNA methyl 99.4 1.2E-12 2.6E-17 112.3 7.7 92 158-262 43-135 (181)
61 TIGR00537 hemK_rel_arch HemK-r 99.4 2.4E-12 5.2E-17 109.3 9.1 96 157-262 19-133 (179)
62 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 2.3E-12 5.1E-17 111.2 8.3 96 157-262 39-136 (223)
63 PRK05134 bifunctional 3-demeth 99.3 3.8E-12 8.2E-17 111.9 9.5 96 157-262 48-144 (233)
64 TIGR01983 UbiG ubiquinone bios 99.3 4.2E-12 9.1E-17 110.6 8.4 97 157-262 45-142 (224)
65 PRK00121 trmB tRNA (guanine-N( 99.3 1.9E-12 4.1E-17 112.6 5.6 100 157-262 40-149 (202)
66 TIGR02469 CbiT precorrin-6Y C5 99.3 6.9E-12 1.5E-16 98.4 7.8 95 157-262 19-115 (124)
67 TIGR03438 probable methyltrans 99.3 9.7E-12 2.1E-16 114.5 9.0 101 157-262 63-170 (301)
68 TIGR02716 C20_methyl_CrtF C-20 99.3 1.3E-11 2.7E-16 113.5 9.3 98 156-262 148-247 (306)
69 PRK13944 protein-L-isoaspartat 99.3 1.5E-11 3.2E-16 107.1 8.2 94 156-262 71-166 (205)
70 KOG4300 Predicted methyltransf 99.3 3.8E-12 8.3E-17 110.8 4.3 97 158-262 77-175 (252)
71 PRK11088 rrmA 23S rRNA methylt 99.3 1.6E-11 3.6E-16 111.1 8.3 86 157-262 85-174 (272)
72 TIGR00080 pimt protein-L-isoas 99.2 1.8E-11 4E-16 107.0 7.8 93 155-262 75-170 (215)
73 PRK13942 protein-L-isoaspartat 99.2 1.9E-11 4.2E-16 107.1 7.6 94 155-262 74-169 (212)
74 PRK08287 cobalt-precorrin-6Y C 99.2 4.5E-11 9.7E-16 102.1 8.9 93 157-262 31-124 (187)
75 PRK13256 thiopurine S-methyltr 99.2 1E-10 2.2E-15 103.9 11.2 105 157-262 43-156 (226)
76 PF13659 Methyltransf_26: Meth 99.2 8.2E-12 1.8E-16 97.8 3.7 99 158-262 1-108 (117)
77 TIGR00091 tRNA (guanine-N(7)-) 99.2 1.5E-11 3.3E-16 106.1 5.3 99 158-262 17-125 (194)
78 PF07021 MetW: Methionine bios 99.2 4.8E-11 1E-15 103.1 8.1 89 157-260 13-103 (193)
79 PRK14967 putative methyltransf 99.2 7.4E-11 1.6E-15 103.8 9.0 99 156-262 35-152 (223)
80 PLN03075 nicotianamine synthas 99.2 6.7E-11 1.5E-15 108.8 9.0 101 157-262 123-226 (296)
81 PRK00312 pcm protein-L-isoaspa 99.1 1.2E-10 2.6E-15 101.4 8.2 92 156-262 77-168 (212)
82 cd02440 AdoMet_MTases S-adenos 99.1 1.1E-10 2.4E-15 86.1 6.4 96 160-262 1-97 (107)
83 TIGR00406 prmA ribosomal prote 99.1 2.9E-10 6.4E-15 104.0 10.1 94 157-262 159-252 (288)
84 PRK00377 cbiT cobalt-precorrin 99.1 2.6E-10 5.7E-15 98.5 8.1 98 155-262 38-138 (198)
85 smart00650 rADc Ribosomal RNA 99.1 2.1E-10 4.5E-15 96.7 7.2 87 157-253 13-99 (169)
86 PHA03411 putative methyltransf 99.1 2.4E-10 5.1E-15 104.1 7.3 77 158-246 65-142 (279)
87 PRK00811 spermidine synthase; 99.1 2.7E-10 6E-15 104.1 7.7 105 157-262 76-184 (283)
88 COG4123 Predicted O-methyltran 99.1 2.2E-10 4.7E-15 102.9 6.5 101 157-262 44-163 (248)
89 PRK09328 N5-glutamine S-adenos 99.1 7.5E-10 1.6E-14 99.4 9.9 99 157-262 108-231 (275)
90 PRK04266 fibrillarin; Provisio 99.1 6.1E-10 1.3E-14 98.9 9.0 94 155-262 70-169 (226)
91 PHA03412 putative methyltransf 99.1 3.6E-10 7.9E-15 100.9 7.5 93 158-262 50-156 (241)
92 TIGR03534 RF_mod_PrmC protein- 99.1 1.2E-09 2.7E-14 96.4 10.8 98 158-262 88-210 (251)
93 KOG3010 Methyltransferase [Gen 99.1 4.9E-10 1.1E-14 99.7 7.9 94 159-261 35-128 (261)
94 PRK14968 putative methyltransf 99.0 4.1E-10 8.8E-15 95.0 7.0 100 157-262 23-141 (188)
95 TIGR03533 L3_gln_methyl protei 99.0 5.6E-10 1.2E-14 102.1 8.4 99 158-262 122-244 (284)
96 COG4976 Predicted methyltransf 99.0 7.4E-11 1.6E-15 104.3 2.1 104 141-262 113-218 (287)
97 TIGR01177 conserved hypothetic 99.0 5.1E-10 1.1E-14 104.2 7.7 100 156-262 181-287 (329)
98 PRK11188 rrmJ 23S rRNA methylt 99.0 5E-10 1.1E-14 98.1 7.2 90 156-262 50-158 (209)
99 PRK14966 unknown domain/N5-glu 99.0 1.4E-09 3.1E-14 104.2 9.5 76 157-239 251-328 (423)
100 PF08003 Methyltransf_9: Prote 99.0 8.4E-10 1.8E-14 101.4 7.4 98 157-262 115-212 (315)
101 PRK07402 precorrin-6B methylas 99.0 1.9E-09 4.1E-14 92.8 9.1 95 156-262 39-135 (196)
102 PRK11805 N5-glutamine S-adenos 99.0 1E-09 2.2E-14 101.5 7.7 98 159-262 135-256 (307)
103 PRK00517 prmA ribosomal protei 99.0 1.3E-09 2.9E-14 97.6 8.2 88 157-262 119-206 (250)
104 PF00891 Methyltransf_2: O-met 99.0 8.2E-10 1.8E-14 97.8 6.4 90 156-262 99-190 (241)
105 PRK13943 protein-L-isoaspartat 99.0 1.4E-09 3E-14 101.4 7.3 93 156-262 79-173 (322)
106 PLN02232 ubiquinone biosynthes 98.9 9.8E-10 2.1E-14 92.2 5.5 74 184-262 1-74 (160)
107 TIGR00536 hemK_fam HemK family 98.9 2.5E-09 5.4E-14 97.6 8.2 98 159-262 116-237 (284)
108 KOG1541 Predicted protein carb 98.9 1E-09 2.2E-14 96.7 5.0 94 157-262 50-153 (270)
109 TIGR03704 PrmC_rel_meth putati 98.9 2.6E-09 5.6E-14 96.1 7.5 96 158-262 87-209 (251)
110 PRK14121 tRNA (guanine-N(7)-)- 98.9 2.5E-09 5.5E-14 101.7 7.3 99 158-262 123-228 (390)
111 PF05219 DREV: DREV methyltran 98.9 4.1E-09 8.8E-14 95.0 8.2 88 157-262 94-181 (265)
112 PF05724 TPMT: Thiopurine S-me 98.9 2.7E-09 5.9E-14 94.3 6.7 106 156-262 36-148 (218)
113 PLN02366 spermidine synthase 98.9 6.2E-09 1.3E-13 96.5 8.6 104 157-262 91-199 (308)
114 PRK00274 ksgA 16S ribosomal RN 98.9 4.3E-09 9.3E-14 95.6 6.6 86 156-252 41-126 (272)
115 TIGR00438 rrmJ cell division p 98.9 4.6E-09 1E-13 89.8 6.3 91 155-262 30-139 (188)
116 COG2263 Predicted RNA methylas 98.8 4E-09 8.6E-14 90.9 5.8 74 157-240 45-118 (198)
117 TIGR00417 speE spermidine synt 98.8 7.3E-09 1.6E-13 93.9 7.9 104 157-262 72-179 (270)
118 PRK04457 spermidine synthase; 98.8 4.2E-09 9.2E-14 95.4 6.3 101 157-262 66-170 (262)
119 PRK14896 ksgA 16S ribosomal RN 98.8 7.8E-09 1.7E-13 93.2 7.9 84 156-251 28-111 (258)
120 COG2518 Pcm Protein-L-isoaspar 98.8 1E-08 2.2E-13 89.8 8.2 85 155-246 70-154 (209)
121 PRK14904 16S rRNA methyltransf 98.8 1.5E-08 3.2E-13 98.1 9.8 100 156-262 249-370 (445)
122 COG2264 PrmA Ribosomal protein 98.8 1.5E-08 3.2E-13 93.4 9.1 95 157-262 162-256 (300)
123 PRK01544 bifunctional N5-gluta 98.8 8.6E-09 1.9E-13 101.5 7.8 99 158-262 139-262 (506)
124 PRK10901 16S rRNA methyltransf 98.8 1.8E-08 3.8E-13 97.2 9.4 100 156-262 243-365 (427)
125 PRK03522 rumB 23S rRNA methylu 98.8 6.6E-09 1.4E-13 96.2 6.2 75 158-239 174-249 (315)
126 COG2890 HemK Methylase of poly 98.8 1.1E-08 2.4E-13 93.6 7.5 71 160-239 113-185 (280)
127 PRK14901 16S rRNA methyltransf 98.8 1.8E-08 4E-13 97.2 9.4 101 156-262 251-377 (434)
128 PRK01581 speE spermidine synth 98.8 2.2E-08 4.7E-13 94.6 9.2 105 157-262 150-261 (374)
129 PRK13168 rumA 23S rRNA m(5)U19 98.8 9.4E-09 2E-13 99.5 6.8 77 156-239 296-376 (443)
130 PTZ00146 fibrillarin; Provisio 98.8 2.2E-08 4.9E-13 92.0 8.9 96 155-262 130-230 (293)
131 KOG2940 Predicted methyltransf 98.8 2E-08 4.2E-13 89.3 7.5 95 158-262 73-167 (325)
132 PRK14903 16S rRNA methyltransf 98.8 2.8E-08 6.2E-13 96.0 9.3 101 156-262 236-359 (431)
133 PRK03612 spermidine synthase; 98.8 1.7E-08 3.7E-13 99.7 7.9 105 157-262 297-408 (521)
134 TIGR00755 ksgA dimethyladenosi 98.8 1.7E-08 3.8E-13 90.5 7.1 85 156-252 28-115 (253)
135 PRK14902 16S rRNA methyltransf 98.8 4.1E-08 8.9E-13 95.0 10.1 101 156-262 249-372 (444)
136 PRK10909 rsmD 16S rRNA m(2)G96 98.8 9.1E-09 2E-13 89.8 4.9 78 157-240 53-131 (199)
137 TIGR00563 rsmB ribosomal RNA s 98.8 4.2E-08 9E-13 94.5 10.0 113 138-262 226-361 (426)
138 PTZ00338 dimethyladenosine tra 98.7 1.9E-08 4E-13 92.8 7.2 89 155-252 34-122 (294)
139 TIGR00446 nop2p NOL1/NOP2/sun 98.7 4.1E-08 8.9E-13 88.8 9.1 101 156-262 70-192 (264)
140 PF01135 PCMT: Protein-L-isoas 98.7 6.2E-09 1.3E-13 91.5 3.3 84 155-244 70-155 (209)
141 PF03291 Pox_MCEL: mRNA cappin 98.7 2.5E-08 5.3E-13 93.4 6.9 105 157-262 62-179 (331)
142 PRK15128 23S rRNA m(5)C1962 me 98.7 2.2E-08 4.8E-13 95.8 6.7 101 157-262 220-332 (396)
143 COG2242 CobL Precorrin-6B meth 98.7 4.1E-08 8.8E-13 84.6 7.4 95 155-262 32-128 (187)
144 KOG2361 Predicted methyltransf 98.7 1.9E-08 4.1E-13 89.7 5.0 136 107-262 33-176 (264)
145 PRK11783 rlmL 23S rRNA m(2)G24 98.7 2.5E-08 5.4E-13 101.8 6.6 102 157-262 538-649 (702)
146 PF06325 PrmA: Ribosomal prote 98.7 2.2E-08 4.9E-13 92.3 5.5 92 157-262 161-252 (295)
147 PLN02781 Probable caffeoyl-CoA 98.7 7.3E-08 1.6E-12 85.9 7.8 107 139-262 57-171 (234)
148 TIGR00479 rumA 23S rRNA (uraci 98.6 7.3E-08 1.6E-12 92.8 7.2 76 157-239 292-371 (431)
149 TIGR02085 meth_trns_rumB 23S r 98.6 9.1E-08 2E-12 90.8 7.3 76 158-240 234-310 (374)
150 KOG1271 Methyltransferases [Ge 98.6 1.3E-07 2.8E-12 81.4 6.8 99 159-262 69-174 (227)
151 PLN02672 methionine S-methyltr 98.5 1.8E-07 3.8E-12 98.8 8.2 82 158-239 119-212 (1082)
152 PF01739 CheR: CheR methyltran 98.5 4E-07 8.8E-12 79.3 7.6 106 157-262 31-168 (196)
153 KOG1975 mRNA cap methyltransfe 98.5 2E-07 4.4E-12 86.2 5.4 122 137-262 101-230 (389)
154 PRK04148 hypothetical protein; 98.5 1E-06 2.2E-11 72.4 8.9 83 157-258 16-100 (134)
155 PF10294 Methyltransf_16: Puta 98.4 4.1E-07 8.8E-12 77.4 6.0 100 157-262 45-149 (173)
156 TIGR00478 tly hemolysin TlyA f 98.4 4.1E-07 8.9E-12 81.0 5.8 78 157-240 75-153 (228)
157 TIGR02143 trmA_only tRNA (urac 98.4 4E-07 8.6E-12 85.9 5.9 74 159-239 199-288 (353)
158 PRK05031 tRNA (uracil-5-)-meth 98.4 3.7E-07 8.1E-12 86.3 5.6 74 159-239 208-297 (362)
159 PF05185 PRMT5: PRMT5 arginine 98.4 5.5E-07 1.2E-11 87.5 6.7 97 158-262 187-290 (448)
160 PRK10611 chemotaxis methyltran 98.4 1.5E-06 3.3E-11 79.9 8.8 104 158-262 116-255 (287)
161 COG3963 Phospholipid N-methylt 98.4 1.3E-06 2.9E-11 74.1 7.4 97 155-262 46-149 (194)
162 COG0030 KsgA Dimethyladenosine 98.3 1.1E-06 2.4E-11 79.5 7.2 76 155-239 28-104 (259)
163 KOG1499 Protein arginine N-met 98.3 1E-06 2.2E-11 82.3 6.5 100 157-262 60-160 (346)
164 PLN02823 spermine synthase 98.3 2.7E-06 6E-11 79.8 9.0 101 157-262 103-213 (336)
165 COG2519 GCD14 tRNA(1-methylade 98.3 2.1E-06 4.5E-11 77.2 7.8 96 154-262 91-188 (256)
166 PLN02476 O-methyltransferase 98.3 1.8E-06 3.9E-11 79.1 7.5 96 157-262 118-221 (278)
167 KOG2899 Predicted methyltransf 98.3 1.4E-06 3E-11 78.0 6.6 104 157-262 58-202 (288)
168 PF01596 Methyltransf_3: O-met 98.3 7.4E-07 1.6E-11 78.1 4.5 96 157-262 45-148 (205)
169 PRK11727 23S rRNA mA1618 methy 98.3 1.1E-06 2.3E-11 82.1 5.7 84 157-244 114-203 (321)
170 TIGR00095 RNA methyltransferas 98.3 1.1E-06 2.5E-11 75.8 5.5 80 157-241 49-132 (189)
171 KOG0820 Ribosomal RNA adenine 98.2 2.9E-06 6.3E-11 77.1 7.4 78 154-239 55-132 (315)
172 KOG3420 Predicted RNA methylas 98.2 5.2E-07 1.1E-11 75.1 2.0 87 157-250 48-137 (185)
173 PF06080 DUF938: Protein of un 98.2 6.5E-06 1.4E-10 72.1 8.6 97 160-262 28-134 (204)
174 COG4122 Predicted O-methyltran 98.2 3.5E-06 7.6E-11 74.6 6.9 110 136-262 45-159 (219)
175 KOG3987 Uncharacterized conser 98.2 8.4E-07 1.8E-11 77.9 2.4 86 158-261 113-198 (288)
176 PF00398 RrnaAD: Ribosomal RNA 98.1 6E-06 1.3E-10 74.6 7.4 88 156-253 29-119 (262)
177 PF02390 Methyltransf_4: Putat 98.1 3.2E-06 7E-11 73.4 5.4 97 160-262 20-126 (195)
178 PF08123 DOT1: Histone methyla 98.1 4.2E-06 9.2E-11 73.4 6.1 117 139-262 28-151 (205)
179 PF09243 Rsm22: Mitochondrial 98.1 5E-06 1.1E-10 75.9 6.4 97 157-260 33-132 (274)
180 KOG2904 Predicted methyltransf 98.1 7.1E-06 1.5E-10 74.7 6.7 96 138-239 130-231 (328)
181 KOG1500 Protein arginine N-met 98.1 9.5E-06 2.1E-10 75.8 7.7 99 157-262 177-275 (517)
182 PRK00050 16S rRNA m(4)C1402 me 98.1 4.2E-06 9.2E-11 77.3 4.7 83 157-247 19-109 (296)
183 COG0500 SmtA SAM-dependent met 98.0 2.7E-05 5.8E-10 58.8 8.0 91 161-262 52-148 (257)
184 PLN02589 caffeoyl-CoA O-methyl 98.0 1.1E-05 2.4E-10 72.7 6.7 107 139-262 68-183 (247)
185 TIGR03439 methyl_EasF probable 98.0 5E-05 1.1E-09 70.9 11.2 100 157-262 76-190 (319)
186 PF09445 Methyltransf_15: RNA 98.0 3.5E-06 7.5E-11 71.5 2.8 74 160-239 2-78 (163)
187 PRK00536 speE spermidine synth 98.0 1.8E-05 4E-10 71.9 7.4 94 156-262 71-164 (262)
188 PRK04338 N(2),N(2)-dimethylgua 98.0 8.7E-06 1.9E-10 77.7 5.2 93 158-262 58-151 (382)
189 PF01170 UPF0020: Putative RNA 97.9 1.7E-05 3.6E-10 67.9 5.9 101 156-261 27-143 (179)
190 PF05958 tRNA_U5-meth_tr: tRNA 97.9 1.8E-05 4E-10 74.6 6.1 59 159-224 198-256 (352)
191 PF02475 Met_10: Met-10+ like- 97.9 1.3E-05 2.8E-10 70.1 4.7 93 157-261 101-194 (200)
192 KOG3045 Predicted RNA methylas 97.9 5.9E-06 1.3E-10 74.7 2.5 78 157-262 180-257 (325)
193 COG0421 SpeE Spermidine syntha 97.9 2.3E-05 4.9E-10 72.0 6.3 103 158-262 77-183 (282)
194 PF12147 Methyltransf_20: Puta 97.9 6.2E-05 1.3E-09 69.2 9.1 101 157-262 135-242 (311)
195 KOG1661 Protein-L-isoaspartate 97.9 3E-05 6.5E-10 68.2 6.5 82 156-237 81-169 (237)
196 PF13679 Methyltransf_32: Meth 97.8 3.5E-05 7.5E-10 63.2 6.0 93 157-253 25-122 (141)
197 COG0220 Predicted S-adenosylme 97.8 2.3E-05 4.9E-10 69.9 5.1 94 159-262 50-157 (227)
198 PF08704 GCD14: tRNA methyltra 97.8 3.7E-05 8E-10 69.3 5.8 96 155-262 38-139 (247)
199 COG2265 TrmA SAM-dependent met 97.8 4.1E-05 8.8E-10 74.3 6.3 75 157-238 293-370 (432)
200 PF01564 Spermine_synth: Sperm 97.7 1.5E-05 3.3E-10 71.6 2.4 103 157-262 76-184 (246)
201 COG1352 CheR Methylase of chem 97.7 8.6E-05 1.9E-09 67.8 7.3 105 157-262 96-234 (268)
202 COG4076 Predicted RNA methylas 97.7 9.2E-05 2E-09 64.3 7.0 94 158-260 33-126 (252)
203 TIGR01444 fkbM_fam methyltrans 97.7 8.5E-05 1.8E-09 60.0 6.0 41 160-201 1-43 (143)
204 PF05148 Methyltransf_8: Hypot 97.7 1.4E-05 3.1E-10 70.2 0.9 80 157-262 72-151 (219)
205 PF02527 GidB: rRNA small subu 97.6 0.00022 4.8E-09 61.6 8.0 90 160-262 51-141 (184)
206 PRK11933 yebU rRNA (cytosine-C 97.6 0.00033 7.2E-09 68.7 9.6 101 156-262 112-235 (470)
207 PF03602 Cons_hypoth95: Conser 97.6 3.5E-05 7.7E-10 66.3 2.5 98 157-261 42-145 (183)
208 PRK11783 rlmL 23S rRNA m(2)G24 97.5 0.00016 3.5E-09 74.1 6.5 99 157-260 190-335 (702)
209 COG1092 Predicted SAM-dependen 97.5 0.00023 5.1E-09 68.2 6.7 101 158-262 218-329 (393)
210 PF11968 DUF3321: Putative met 97.4 0.00012 2.7E-09 64.6 3.9 82 158-262 52-137 (219)
211 KOG1269 SAM-dependent methyltr 97.4 0.00011 2.4E-09 69.8 3.4 100 156-262 109-208 (364)
212 KOG1331 Predicted methyltransf 97.4 0.00015 3.2E-09 66.4 3.8 90 157-262 45-136 (293)
213 PF03141 Methyltransf_29: Puta 97.4 0.00011 2.4E-09 71.7 3.0 106 138-262 101-212 (506)
214 COG0357 GidB Predicted S-adeno 97.4 0.0017 3.8E-08 57.4 10.2 74 158-238 68-143 (215)
215 PRK11760 putative 23S rRNA C24 97.4 0.00051 1.1E-08 64.7 7.1 71 155-239 209-279 (357)
216 PRK01544 bifunctional N5-gluta 97.3 0.00035 7.7E-09 69.0 5.3 98 158-262 348-455 (506)
217 PF10672 Methyltrans_SAM: S-ad 97.3 0.00021 4.5E-09 65.8 3.4 116 133-262 109-231 (286)
218 COG0742 N6-adenine-specific me 97.2 0.001 2.2E-08 57.7 7.0 80 157-241 43-125 (187)
219 PF02384 N6_Mtase: N-6 DNA Met 97.2 0.00061 1.3E-08 62.5 5.9 112 140-262 36-176 (311)
220 COG2521 Predicted archaeal met 97.2 0.00026 5.6E-09 63.4 3.1 102 155-262 132-238 (287)
221 KOG2187 tRNA uracil-5-methyltr 97.2 0.00061 1.3E-08 66.8 5.7 64 154-224 380-443 (534)
222 TIGR02987 met_A_Alw26 type II 97.2 0.00064 1.4E-08 67.2 5.8 78 158-241 32-123 (524)
223 TIGR00308 TRM1 tRNA(guanine-26 97.1 0.00055 1.2E-08 65.3 4.8 91 159-261 46-139 (374)
224 COG1041 Predicted DNA modifica 97.1 0.0014 3E-08 61.7 7.3 101 155-262 195-303 (347)
225 COG0116 Predicted N6-adenine-s 97.1 0.0013 2.8E-08 62.7 6.9 84 157-246 191-316 (381)
226 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.1 0.00045 9.7E-09 62.7 3.4 106 157-262 56-192 (256)
227 COG2520 Predicted methyltransf 97.0 0.0017 3.7E-08 61.2 7.1 78 157-239 188-265 (341)
228 PF07942 N2227: N2227-like pro 97.0 0.0014 3.1E-08 59.9 6.2 103 157-262 56-195 (270)
229 KOG2730 Methylase [General fun 96.8 0.0013 2.9E-08 58.4 4.3 74 158-237 95-172 (263)
230 COG4262 Predicted spermidine s 96.8 0.0028 6.2E-08 60.2 6.3 102 158-262 290-400 (508)
231 KOG3191 Predicted N6-DNA-methy 96.8 0.002 4.3E-08 55.8 4.6 74 158-239 44-119 (209)
232 PRK10742 putative methyltransf 96.8 0.0015 3.3E-08 58.9 4.1 82 160-242 91-176 (250)
233 PF03059 NAS: Nicotianamine sy 96.3 0.0071 1.5E-07 55.5 5.7 100 158-262 121-223 (276)
234 KOG1663 O-methyltransferase [S 96.2 0.019 4.2E-07 51.2 7.7 106 140-262 63-176 (237)
235 KOG2352 Predicted spermine/spe 96.1 0.021 4.5E-07 55.9 8.0 96 160-262 51-154 (482)
236 PHA01634 hypothetical protein 96.1 0.01 2.2E-07 48.7 4.7 45 157-201 28-72 (156)
237 COG4627 Uncharacterized protei 96.1 0.0043 9.3E-08 52.5 2.5 38 225-262 42-79 (185)
238 TIGR00006 S-adenosyl-methyltra 95.8 0.023 5E-07 52.9 6.4 85 156-247 19-111 (305)
239 COG3897 Predicted methyltransf 95.7 0.013 2.8E-07 51.4 3.9 91 156-256 78-169 (218)
240 COG0293 FtsJ 23S rRNA methylas 95.6 0.024 5.2E-07 49.8 5.6 91 155-262 43-152 (205)
241 PF04672 Methyltransf_19: S-ad 95.6 0.022 4.7E-07 52.0 5.4 116 137-262 51-183 (267)
242 COG1189 Predicted rRNA methyla 95.6 0.017 3.7E-07 51.9 4.4 73 157-239 79-153 (245)
243 PF01269 Fibrillarin: Fibrilla 95.3 0.05 1.1E-06 48.5 6.6 92 154-262 70-171 (229)
244 PF05971 Methyltransf_10: Prot 95.2 0.033 7.1E-07 51.7 5.4 85 158-246 103-193 (299)
245 PF04816 DUF633: Family of unk 95.0 0.028 6.1E-07 49.3 4.0 72 161-238 1-74 (205)
246 KOG1501 Arginine N-methyltrans 94.9 0.07 1.5E-06 52.0 6.8 84 158-246 67-151 (636)
247 KOG1709 Guanidinoacetate methy 94.9 0.078 1.7E-06 47.3 6.5 97 157-262 101-199 (271)
248 PF02636 Methyltransf_28: Puta 94.9 0.034 7.3E-07 49.8 4.3 45 158-202 19-72 (252)
249 COG5459 Predicted rRNA methyla 94.7 0.08 1.7E-06 50.3 6.4 101 158-262 114-218 (484)
250 PF01728 FtsJ: FtsJ-like methy 94.7 0.03 6.5E-07 47.2 3.3 34 157-191 23-59 (181)
251 PF04445 SAM_MT: Putative SAM- 94.6 0.025 5.5E-07 50.7 2.8 83 159-242 77-163 (234)
252 cd00315 Cyt_C5_DNA_methylase C 94.4 0.046 1E-06 49.8 4.0 67 160-238 2-70 (275)
253 KOG2539 Mitochondrial/chloropl 94.3 0.031 6.8E-07 54.5 2.9 90 157-248 200-292 (491)
254 KOG2793 Putative N2,N2-dimethy 94.3 0.077 1.7E-06 48.0 5.1 98 158-258 87-188 (248)
255 COG0144 Sun tRNA and rRNA cyto 94.1 0.18 4E-06 47.7 7.4 101 155-262 154-281 (355)
256 KOG3115 Methyltransferase-like 94.0 0.098 2.1E-06 46.3 5.1 66 158-224 61-129 (249)
257 PF07091 FmrO: Ribosomal RNA m 93.9 0.13 2.9E-06 46.5 5.8 81 157-246 105-187 (251)
258 COG1565 Uncharacterized conser 93.4 0.12 2.6E-06 49.2 4.8 48 155-202 75-131 (370)
259 KOG2651 rRNA adenine N-6-methy 93.4 0.2 4.4E-06 48.0 6.3 41 158-198 154-194 (476)
260 KOG4058 Uncharacterized conser 93.3 0.083 1.8E-06 44.6 3.2 81 157-245 72-153 (199)
261 COG2384 Predicted SAM-dependen 92.9 0.39 8.4E-06 42.8 7.0 76 158-238 17-93 (226)
262 PF01189 Nol1_Nop2_Fmu: NOL1/N 92.1 0.18 3.9E-06 46.2 4.2 75 156-236 84-162 (283)
263 KOG2798 Putative trehalase [Ca 92.0 0.29 6.4E-06 45.9 5.3 102 158-262 151-289 (369)
264 KOG3201 Uncharacterized conser 91.5 0.066 1.4E-06 45.8 0.5 122 131-261 6-132 (201)
265 KOG2915 tRNA(1-methyladenosine 91.0 0.94 2E-05 41.8 7.3 86 140-237 95-184 (314)
266 PF01795 Methyltransf_5: MraW 90.4 0.36 7.7E-06 45.1 4.3 84 157-247 20-112 (310)
267 PF01555 N6_N4_Mtase: DNA meth 89.9 0.91 2E-05 38.6 6.1 53 140-198 179-231 (231)
268 PF08468 MTS_N: Methyltransfer 89.6 0.52 1.1E-05 39.6 4.3 53 34-90 68-120 (155)
269 cd08283 FDH_like_1 Glutathione 89.2 0.68 1.5E-05 43.6 5.3 45 155-199 182-228 (386)
270 KOG2920 Predicted methyltransf 88.9 0.5 1.1E-05 43.5 3.9 91 157-247 116-213 (282)
271 PF13578 Methyltransf_24: Meth 88.4 0.05 1.1E-06 41.7 -2.5 92 162-262 1-98 (106)
272 COG4301 Uncharacterized conser 87.6 1 2.2E-05 41.2 5.0 99 158-262 79-186 (321)
273 KOG0822 Protein kinase inhibit 87.3 2.3 5E-05 42.6 7.5 98 158-262 368-471 (649)
274 COG3129 Predicted SAM-dependen 87.0 1.2 2.5E-05 40.4 5.0 98 140-243 62-166 (292)
275 PRK11524 putative methyltransf 86.9 2.1 4.7E-05 39.0 6.8 58 139-202 195-252 (284)
276 KOG1562 Spermidine synthase [A 85.5 0.43 9.2E-06 44.4 1.5 105 156-262 120-229 (337)
277 PRK13699 putative methylase; P 85.5 2.8 6.1E-05 37.2 6.7 45 157-202 163-207 (227)
278 KOG4589 Cell division protein 85.3 1.1 2.4E-05 39.3 3.9 34 155-188 67-102 (232)
279 PTZ00357 methyltransferase; Pr 84.2 2.4 5.2E-05 43.9 6.2 101 159-261 702-823 (1072)
280 KOG0821 Predicted ribosomal RN 83.9 1 2.2E-05 40.6 3.0 61 158-225 51-111 (326)
281 TIGR00675 dcm DNA-methyltransf 82.2 1.2 2.5E-05 41.5 2.9 66 161-238 1-67 (315)
282 COG4798 Predicted methyltransf 81.5 4.3 9.4E-05 35.9 6.0 98 154-262 45-159 (238)
283 COG1889 NOP1 Fibrillarin-like 81.5 6.4 0.00014 35.0 7.0 57 142-199 61-119 (231)
284 PF07757 AdoMet_MTase: Predict 81.3 1.4 3E-05 35.1 2.6 45 139-187 43-87 (112)
285 PF05050 Methyltransf_21: Meth 81.2 2.7 5.9E-05 33.8 4.5 37 163-199 1-42 (167)
286 COG0275 Predicted S-adenosylme 81.0 4.2 9.2E-05 38.0 6.1 61 157-224 23-85 (314)
287 PRK09424 pntA NAD(P) transhydr 80.9 6.4 0.00014 39.3 7.8 45 155-199 162-207 (509)
288 PF01861 DUF43: Protein of unk 79.8 4.8 0.0001 36.4 5.9 94 157-261 44-140 (243)
289 PF03492 Methyltransf_7: SAM d 79.4 1.6 3.4E-05 41.1 2.8 22 157-178 16-37 (334)
290 PF02254 TrkA_N: TrkA-N domain 78.4 6.7 0.00014 30.0 5.7 59 166-237 4-69 (116)
291 PF03141 Methyltransf_29: Puta 77.8 2.4 5.1E-05 42.1 3.6 93 158-262 366-460 (506)
292 PF05206 TRM13: Methyltransfer 74.6 6.3 0.00014 35.9 5.3 33 156-188 17-55 (259)
293 KOG2078 tRNA modification enzy 74.4 1.7 3.7E-05 42.4 1.6 63 157-224 249-311 (495)
294 TIGR00027 mthyl_TIGR00027 meth 71.2 23 0.0005 32.0 8.1 99 159-262 83-190 (260)
295 PF11599 AviRa: RRNA methyltra 69.7 7.4 0.00016 34.9 4.3 104 157-260 51-205 (246)
296 COG1064 AdhP Zn-dependent alco 68.7 13 0.00028 35.3 6.0 46 155-200 164-210 (339)
297 PF00145 DNA_methylase: C-5 cy 67.8 2.6 5.7E-05 38.0 1.2 67 160-239 2-70 (335)
298 PLN02668 indole-3-acetate carb 66.6 3.6 7.8E-05 39.6 1.9 19 227-245 159-177 (386)
299 PF04072 LCM: Leucine carboxyl 66.5 17 0.00037 30.7 6.0 93 160-256 81-183 (183)
300 COG0286 HsdM Type I restrictio 66.2 9.7 0.00021 37.7 4.9 79 157-240 186-274 (489)
301 PF11312 DUF3115: Protein of u 65.2 37 0.00079 31.9 8.2 105 157-262 86-235 (315)
302 PF06962 rRNA_methylase: Putat 64.9 6 0.00013 32.8 2.7 74 182-262 1-85 (140)
303 COG0270 Dcm Site-specific DNA 64.5 7.9 0.00017 36.1 3.8 72 158-240 3-77 (328)
304 COG4017 Uncharacterized protei 63.0 3.2 6.9E-05 36.6 0.7 70 157-245 44-114 (254)
305 cd08254 hydroxyacyl_CoA_DH 6-h 62.4 18 0.00038 32.5 5.6 44 155-198 163-207 (338)
306 cd08232 idonate-5-DH L-idonate 60.4 16 0.00036 33.0 5.0 42 157-198 165-208 (339)
307 KOG1227 Putative methyltransfe 59.9 2.7 5.8E-05 39.4 -0.3 44 158-201 195-239 (351)
308 cd05188 MDR Medium chain reduc 59.8 23 0.00049 30.3 5.6 44 156-199 133-177 (271)
309 COG0686 Ald Alanine dehydrogen 57.8 9.5 0.0002 36.1 2.9 93 158-262 168-261 (371)
310 KOG1201 Hydroxysteroid 17-beta 57.6 12 0.00027 34.8 3.7 85 157-250 37-140 (300)
311 PF02005 TRM: N2,N2-dimethylgu 57.5 9.7 0.00021 36.5 3.1 73 158-235 50-126 (377)
312 PRK09880 L-idonate 5-dehydroge 56.9 26 0.00056 32.1 5.8 43 157-199 169-213 (343)
313 COG1867 TRM1 N2,N2-dimethylgua 55.7 12 0.00026 36.0 3.2 45 158-202 53-98 (380)
314 PF11899 DUF3419: Protein of u 55.6 9.6 0.00021 36.6 2.7 51 212-262 275-327 (380)
315 cd08230 glucose_DH Glucose deh 54.0 36 0.00077 31.4 6.2 43 157-199 172-218 (355)
316 PRK10669 putative cation:proto 53.2 28 0.0006 34.8 5.6 45 166-223 423-470 (558)
317 PF11899 DUF3419: Protein of u 52.8 28 0.0006 33.5 5.3 47 155-202 33-79 (380)
318 PF00107 ADH_zinc_N: Zinc-bind 50.4 26 0.00057 27.0 4.1 33 167-199 1-33 (130)
319 PRK07417 arogenate dehydrogena 50.0 50 0.0011 29.7 6.4 38 161-199 3-42 (279)
320 COG5379 BtaA S-adenosylmethion 49.7 31 0.00067 32.5 4.9 46 157-203 63-108 (414)
321 PRK09496 trkA potassium transp 49.0 41 0.00088 32.1 5.9 67 158-237 231-304 (453)
322 cd08245 CAD Cinnamyl alcohol d 48.4 44 0.00096 30.0 5.8 44 155-198 160-204 (330)
323 KOG0024 Sorbitol dehydrogenase 48.4 39 0.00085 32.1 5.4 45 154-198 166-212 (354)
324 COG1255 Uncharacterized protei 47.5 29 0.00064 28.1 3.8 79 158-259 14-94 (129)
325 TIGR00561 pntA NAD(P) transhyd 46.4 43 0.00093 33.6 5.7 42 157-198 163-205 (511)
326 TIGR00518 alaDH alanine dehydr 46.3 17 0.00036 34.6 2.7 44 157-200 166-210 (370)
327 PRK03659 glutathione-regulated 45.8 40 0.00087 34.2 5.5 59 166-237 406-471 (601)
328 PRK10458 DNA cytosine methylas 43.7 81 0.0017 31.2 7.1 43 158-200 88-130 (467)
329 TIGR03201 dearomat_had 6-hydro 42.8 58 0.0013 29.9 5.7 44 155-198 164-208 (349)
330 TIGR00872 gnd_rel 6-phosphoglu 42.6 31 0.00067 31.5 3.8 37 161-198 3-41 (298)
331 COG1748 LYS9 Saccharopine dehy 41.5 35 0.00076 33.0 4.1 69 160-238 3-76 (389)
332 COG2933 Predicted SAM-dependen 40.9 34 0.00074 31.8 3.7 35 154-189 208-242 (358)
333 COG2910 Putative NADH-flavin r 40.3 25 0.00054 30.9 2.6 61 166-241 7-73 (211)
334 PF03514 GRAS: GRAS domain fam 39.2 90 0.0019 29.8 6.5 101 157-261 110-236 (374)
335 PF07101 DUF1363: Protein of u 39.0 10 0.00022 29.6 0.0 16 161-176 6-21 (124)
336 KOG3924 Putative protein methy 38.5 63 0.0014 31.4 5.2 130 126-262 164-301 (419)
337 PRK08217 fabG 3-ketoacyl-(acyl 36.8 1.4E+02 0.0031 25.2 6.9 74 158-238 5-90 (253)
338 PF02737 3HCDH_N: 3-hydroxyacy 35.9 56 0.0012 27.6 4.1 40 162-202 3-44 (180)
339 PRK03562 glutathione-regulated 35.8 68 0.0015 32.7 5.3 66 159-237 401-471 (621)
340 cd08255 2-desacetyl-2-hydroxye 35.5 92 0.002 27.1 5.6 44 156-199 96-141 (277)
341 COG1063 Tdh Threonine dehydrog 34.7 87 0.0019 29.3 5.6 43 158-200 169-213 (350)
342 cd01065 NAD_bind_Shikimate_DH 34.3 65 0.0014 25.7 4.1 41 157-199 18-62 (155)
343 cd00401 AdoHcyase S-adenosyl-L 33.6 80 0.0017 30.7 5.2 42 157-198 201-243 (413)
344 TIGR02822 adh_fam_2 zinc-bindi 32.9 1.1E+02 0.0023 28.1 5.8 45 155-199 163-208 (329)
345 PRK09496 trkA potassium transp 32.8 1.1E+02 0.0025 29.0 6.2 38 160-199 2-42 (453)
346 PF06690 DUF1188: Protein of u 32.3 44 0.00096 30.3 2.9 68 159-245 43-111 (252)
347 PRK01747 mnmC bifunctional tRN 31.8 49 0.0011 33.7 3.6 104 158-262 58-199 (662)
348 cd01842 SGNH_hydrolase_like_5 31.4 24 0.00052 30.6 1.1 35 228-262 48-92 (183)
349 cd08234 threonine_DH_like L-th 31.1 1.2E+02 0.0025 27.2 5.6 44 155-198 157-202 (334)
350 KOG1122 tRNA and rRNA cytosine 31.0 97 0.0021 30.5 5.2 75 155-235 239-317 (460)
351 PF04989 CmcI: Cephalosporin h 30.9 80 0.0017 27.9 4.3 98 157-262 32-140 (206)
352 PF10354 DUF2431: Domain of un 30.9 64 0.0014 27.2 3.6 45 216-262 57-118 (166)
353 KOG2015 NEDD8-activating compl 30.1 1.3E+02 0.0029 28.8 5.8 93 130-238 23-137 (422)
354 COG3315 O-Methyltransferase in 30.0 1.4E+02 0.0031 27.6 6.0 99 159-262 94-202 (297)
355 PRK01438 murD UDP-N-acetylmura 29.7 1.3E+02 0.0028 29.1 6.1 34 158-191 16-50 (480)
356 cd08261 Zn_ADH7 Alcohol dehydr 29.7 1.3E+02 0.0027 27.2 5.6 44 155-198 157-201 (337)
357 PRK08339 short chain dehydroge 27.8 2.4E+02 0.0053 24.6 7.0 74 158-238 8-93 (263)
358 PRK05867 short chain dehydroge 27.5 2.4E+02 0.0052 24.2 6.9 73 158-238 9-94 (253)
359 PRK05808 3-hydroxybutyryl-CoA 26.9 93 0.002 27.9 4.2 39 160-199 5-45 (282)
360 PRK07819 3-hydroxybutyryl-CoA 26.5 1.2E+02 0.0027 27.5 5.0 41 160-201 7-49 (286)
361 PRK11730 fadB multifunctional 25.9 2.4E+02 0.0051 29.4 7.4 42 159-201 314-357 (715)
362 TIGR02818 adh_III_F_hyde S-(hy 25.8 1.6E+02 0.0035 27.3 5.7 44 155-198 183-228 (368)
363 PRK06200 2,3-dihydroxy-2,3-dih 25.5 2.6E+02 0.0057 24.1 6.8 70 158-238 6-88 (263)
364 cd03111 CpaE_like This protein 25.5 1.4E+02 0.003 22.7 4.4 44 158-202 44-88 (106)
365 PRK12829 short chain dehydroge 25.5 2.9E+02 0.0062 23.6 7.0 58 157-224 10-70 (264)
366 PLN03154 putative allyl alcoho 25.4 1.6E+02 0.0035 27.1 5.6 44 155-198 156-201 (348)
367 cd08241 QOR1 Quinone oxidoredu 25.1 1.7E+02 0.0037 25.4 5.5 43 156-198 138-182 (323)
368 PRK08267 short chain dehydroge 24.8 2.6E+02 0.0057 24.0 6.6 69 160-238 3-85 (260)
369 PRK06172 short chain dehydroge 24.6 3.1E+02 0.0068 23.3 7.0 73 158-238 7-92 (253)
370 TIGR03451 mycoS_dep_FDH mycoth 24.4 1.8E+02 0.0038 26.8 5.7 44 155-198 174-219 (358)
371 PRK09242 tropinone reductase; 24.4 3E+02 0.0065 23.6 6.9 76 158-238 9-96 (257)
372 PRK07063 short chain dehydroge 24.2 3.2E+02 0.0068 23.5 7.0 75 158-238 7-94 (260)
373 cd08237 ribitol-5-phosphate_DH 24.1 1.7E+02 0.0036 26.9 5.4 43 156-198 162-207 (341)
374 PF07652 Flavi_DEAD: Flaviviru 24.1 2.5E+02 0.0054 23.5 5.9 93 158-252 5-115 (148)
375 PRK13394 3-hydroxybutyrate deh 24.1 3.2E+02 0.0068 23.3 7.0 59 158-224 7-68 (262)
376 PRK07677 short chain dehydroge 24.0 3E+02 0.0066 23.5 6.9 56 160-223 3-61 (252)
377 PRK07454 short chain dehydroge 24.0 3.6E+02 0.0078 22.8 7.3 73 158-238 6-91 (241)
378 KOG2198 tRNA cytosine-5-methyl 24.0 1.5E+02 0.0033 28.5 5.1 48 154-201 152-204 (375)
379 KOG1596 Fibrillarin and relate 23.6 1.6E+02 0.0034 27.2 4.9 39 155-194 154-195 (317)
380 PRK06181 short chain dehydroge 23.3 3.2E+02 0.007 23.4 6.9 57 160-224 3-62 (263)
381 PRK12490 6-phosphogluconate de 23.0 1.1E+02 0.0024 27.8 4.0 27 171-198 15-41 (299)
382 PRK12939 short chain dehydroge 22.8 3.6E+02 0.0079 22.7 7.0 59 158-224 7-68 (250)
383 PRK08265 short chain dehydroge 22.7 3.3E+02 0.0073 23.5 6.9 56 158-224 6-64 (261)
384 PF13450 NAD_binding_8: NAD(P) 22.4 95 0.0021 21.8 2.7 26 164-189 2-28 (68)
385 cd05278 FDH_like Formaldehyde 22.4 2.1E+02 0.0045 25.7 5.7 43 156-198 166-210 (347)
386 COG3640 CooC CO dehydrogenase 22.3 1.3E+02 0.0028 27.5 4.0 45 158-203 135-180 (255)
387 PRK06194 hypothetical protein; 22.3 3.5E+02 0.0075 23.6 7.0 74 158-239 6-92 (287)
388 PRK07066 3-hydroxybutyryl-CoA 22.0 1.9E+02 0.0041 27.0 5.4 42 159-201 8-51 (321)
389 TIGR03366 HpnZ_proposed putati 22.0 1.8E+02 0.0039 25.7 5.1 42 157-198 120-163 (280)
390 PRK05786 fabG 3-ketoacyl-(acyl 22.0 3.8E+02 0.0083 22.4 7.0 58 158-224 5-65 (238)
391 TIGR01470 cysG_Nterm siroheme 21.8 2.1E+02 0.0045 24.8 5.2 64 158-237 9-76 (205)
392 PRK07904 short chain dehydroge 21.6 3.2E+02 0.007 23.7 6.6 75 157-238 7-95 (253)
393 PRK07576 short chain dehydroge 21.3 3.6E+02 0.0079 23.4 6.9 58 158-223 9-69 (264)
394 PF03721 UDPG_MGDP_dh_N: UDP-g 21.2 1.1E+02 0.0024 26.1 3.3 33 167-199 7-42 (185)
395 cd08236 sugar_DH NAD(P)-depend 21.2 2.2E+02 0.0048 25.6 5.6 43 156-198 158-202 (343)
396 PRK11154 fadJ multifunctional 21.0 2E+02 0.0044 29.8 5.8 44 158-201 309-354 (708)
397 cd08281 liver_ADH_like1 Zinc-d 20.9 2.2E+02 0.0049 26.3 5.7 45 155-199 189-235 (371)
398 PLN02740 Alcohol dehydrogenase 20.8 2.2E+02 0.0047 26.6 5.6 44 155-198 196-241 (381)
399 PF01488 Shikimate_DH: Shikima 20.8 57 0.0012 26.1 1.4 76 157-243 11-88 (135)
400 PRK12826 3-ketoacyl-(acyl-carr 20.7 4.5E+02 0.0097 22.1 7.2 59 158-224 6-67 (251)
401 TIGR03206 benzo_BadH 2-hydroxy 20.6 4E+02 0.0087 22.5 6.9 59 158-224 3-64 (250)
402 PF03686 UPF0146: Uncharacteri 20.6 1.3E+02 0.0029 24.5 3.5 63 158-238 14-78 (127)
403 cd05566 PTS_IIB_galactitol PTS 20.5 1.6E+02 0.0034 21.4 3.7 16 244-259 74-89 (89)
404 TIGR02825 B4_12hDH leukotriene 20.5 2.4E+02 0.0052 25.3 5.7 44 155-198 136-181 (325)
405 PRK06125 short chain dehydroge 20.4 4.2E+02 0.0091 22.7 7.0 74 158-238 7-89 (259)
406 PRK06035 3-hydroxyacyl-CoA deh 20.3 1.9E+02 0.0041 26.0 4.9 40 160-200 5-46 (291)
407 KOG1098 Putative SAM-dependent 20.3 94 0.002 32.2 3.0 35 156-190 43-79 (780)
408 PRK06718 precorrin-2 dehydroge 20.2 3E+02 0.0065 23.7 5.9 31 158-189 10-42 (202)
No 1
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=100.00 E-value=3.1e-36 Score=263.13 Aligned_cols=153 Identities=52% Similarity=1.035 Sum_probs=121.9
Q ss_pred hhHhHhhHHhhhhccchhhccccCCCCCCcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCC
Q 024811 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (262)
Q Consensus 102 ~~~wy~~~~~yW~~~~~~~dgvlgGy~~is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~ 181 (262)
+..||..+.+||+++++++|||||||+++|.+|+.+|+.||..+.....+ +.....++||||||+||+|+.|+.+.|.
T Consensus 2 ~~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~--~~~~~~~alDcGAGIGRVTk~lLl~~f~ 79 (218)
T PF05891_consen 2 KKIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKP--GKPKFNRALDCGAGIGRVTKGLLLPVFD 79 (218)
T ss_dssp HCHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT-----------SEEEEET-TTTHHHHHTCCCC-S
T ss_pred cccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhccc--CCCCcceEEecccccchhHHHHHHHhcC
Confidence 45899999999999999999999999999999999999999998764211 1234679999999999999999888999
Q ss_pred cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 182 ~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
+||+|||++.+++.|++.+... ..+..++++..+|+|.|+.++||+||+|||+.||||+++++||++|+..|+|
T Consensus 80 ~VDlVEp~~~Fl~~a~~~l~~~------~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~ 153 (218)
T PF05891_consen 80 EVDLVEPVEKFLEQAKEYLGKD------NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKP 153 (218)
T ss_dssp EEEEEES-HHHHHHHHHHTCCG------GCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEE
T ss_pred EeEEeccCHHHHHHHHHHhccc------CCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999987542 2357899999999999987899999999999999999999999999999998
Q ss_pred C
Q 024811 262 T 262 (262)
Q Consensus 262 G 262 (262)
|
T Consensus 154 ~ 154 (218)
T PF05891_consen 154 N 154 (218)
T ss_dssp E
T ss_pred C
Confidence 5
No 2
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.76 E-value=6.9e-18 Score=158.05 Aligned_cols=205 Identities=16% Similarity=0.164 Sum_probs=140.5
Q ss_pred cCCeeEEEeccchhHHHHHHHHhhcCCCCCCCCCceeecccCCCCCccCCHHHHHHHHhccc---cc----hhhhhhHhH
Q 024811 34 AKPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGED---GE----QQEKKTQWY 106 (262)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~g~ef~s~~e~W~~~~~~~---~~----~~~~~~~wy 106 (262)
....++|+.+||+|++++.+++++++.- ++++.|++.|.+++|.+ |..++.....+.. .. ..++...|-
T Consensus 75 ~~~d~~~~~~pk~k~~~~~~l~~~~~~l--~~g~~i~~~G~~~~g~~--s~~k~~~~~~~~~~~~~ar~~~l~~~~~~~~ 150 (342)
T PRK09489 75 ADCDTLIYYWPKNKQEAQFQLMNLLSLL--PVGTDIFVVGENRSGVR--SAEKMLADYAPLNKIDSARRCGLYHGRLEKQ 150 (342)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHhC--CCCCEEEEEEeccccHH--HHHHHHHHhcCccccccceeEEEEEEecccc
Confidence 4567899999999999999999999863 35899999999999998 9999988754321 00 001111121
Q ss_pred h--hHHhhhhccch---hhccccCCCCCCcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCC
Q 024811 107 R--EGISYWEGVEA---SVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (262)
Q Consensus 107 ~--~~~~yW~~~~~---~~dgvlgGy~~is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~ 181 (262)
. ...+||..... .+...-| -++...++....+|...++.. ...+|||+|||+|.++..++ +.++
T Consensus 151 ~~~~~~~~~~~y~~~~l~i~~~pg---vFs~~~lD~gt~lLl~~l~~~-------~~g~VLDlGCG~G~ls~~la-~~~p 219 (342)
T PRK09489 151 PVFDADKFWKEYQVDGLTVKTLPG---VFSRDGLDVGSQLLLSTLTPH-------TKGKVLDVGCGAGVLSAVLA-RHSP 219 (342)
T ss_pred CCCcccccceeeecCCEEEEeCCC---CCCCCCCCHHHHHHHHhcccc-------CCCeEEEeccCcCHHHHHHH-HhCC
Confidence 1 12455653211 1111111 133344444445555544321 24589999999999999999 4443
Q ss_pred --cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCc---hhHHHHHHHHH
Q 024811 182 --EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAK 256 (262)
Q Consensus 182 --~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD---~el~~~l~~~~ 256 (262)
+|+++|+|+.|++.|++++... .-..+++..|+.+.. .++||+|+|+.++|+.-+ .....+|+++.
T Consensus 220 ~~~v~~vDis~~Al~~A~~nl~~n-------~l~~~~~~~D~~~~~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~ 290 (342)
T PRK09489 220 KIRLTLSDVSAAALESSRATLAAN-------GLEGEVFASNVFSDI--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAV 290 (342)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHc-------CCCCEEEEccccccc--CCCccEEEECCCccCCccccHHHHHHHHHHHH
Confidence 7999999999999999988642 113567788876542 368999999999987432 23458999999
Q ss_pred hhccCC
Q 024811 257 VNHSQT 262 (262)
Q Consensus 257 ~~LkPG 262 (262)
+.|+||
T Consensus 291 ~~Lkpg 296 (342)
T PRK09489 291 RHLNSG 296 (342)
T ss_pred HhcCcC
Confidence 999997
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.73 E-value=1.9e-17 Score=147.73 Aligned_cols=98 Identities=19% Similarity=0.186 Sum_probs=88.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||||||||.++..+++..+ .+|+++|+|+.|++.|++++... ...+++|+.+|++++++++++||+|.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~------~~~~i~fv~~dAe~LPf~D~sFD~vt 124 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK------GVQNVEFVVGDAENLPFPDNSFDAVT 124 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhcc------CccceEEEEechhhCCCCCCccCEEE
Confidence 588999999999999999994432 57999999999999999998643 22349999999999999999999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++.|++++|.+ ++|++++|+||||
T Consensus 125 ~~fglrnv~d~~--~aL~E~~RVlKpg 149 (238)
T COG2226 125 ISFGLRNVTDID--KALKEMYRVLKPG 149 (238)
T ss_pred eeehhhcCCCHH--HHHHHHHHhhcCC
Confidence 999999999998 9999999999997
No 4
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.72 E-value=1.5e-17 Score=154.07 Aligned_cols=147 Identities=30% Similarity=0.455 Sum_probs=121.6
Q ss_pred hhHhHhhHHhhhhccchhhcc-ccCCCCCCcc---cchhhHHHHHHHHhhccC-C-CccCCCCceeeEeeccccHHHHHH
Q 024811 102 KTQWYREGISYWEGVEASVDG-VLGGFGNVNE---VDIKGSEAFLQMLLSDRF-P-NARNNQHLVALDCGSGIGRITKNL 175 (262)
Q Consensus 102 ~~~wy~~~~~yW~~~~~~~dg-vlgGy~~is~---~di~~s~~fL~~ll~~~l-~-~~~~~~~~~VLDlGcGtG~lt~~L 175 (262)
...||.++..||.....+.+| ++++|.+.+. .++.++..|+..+..++. . ..+.......+|||+|+|++++.+
T Consensus 116 ~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~l 195 (342)
T KOG3178|consen 116 TWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNL 195 (342)
T ss_pred hHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHH
Confidence 446789999999999999999 8999988777 899999999888765322 1 012333578999999999999999
Q ss_pred HHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHH
Q 024811 176 LIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRA 255 (262)
Q Consensus 176 a~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~ 255 (262)
+. .|++|++|++....+..+...++ . .+..+-+|+..-.| +-|+||++|++||++|+++++||++|
T Consensus 196 l~-~fp~ik~infdlp~v~~~a~~~~-~---------gV~~v~gdmfq~~P---~~daI~mkWiLhdwtDedcvkiLknC 261 (342)
T KOG3178|consen 196 LS-KYPHIKGINFDLPFVLAAAPYLA-P---------GVEHVAGDMFQDTP---KGDAIWMKWILHDWTDEDCVKILKNC 261 (342)
T ss_pred HH-hCCCCceeecCHHHHHhhhhhhc-C---------CcceecccccccCC---CcCeEEEEeecccCChHHHHHHHHHH
Confidence 95 89999999999999999988873 1 25666677755444 35699999999999999999999999
Q ss_pred HhhccCC
Q 024811 256 KVNHSQT 262 (262)
Q Consensus 256 ~~~LkPG 262 (262)
+..|+||
T Consensus 262 ~~sL~~~ 268 (342)
T KOG3178|consen 262 KKSLPPG 268 (342)
T ss_pred HHhCCCC
Confidence 9999996
No 5
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.71 E-value=3.2e-17 Score=152.41 Aligned_cols=98 Identities=18% Similarity=0.291 Sum_probs=84.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||||||+|.++..|+ +.+.+|++||+|++|++.|+++.... ....++.|+++++++++...++||+|+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La-~~g~~V~GID~s~~~i~~Ar~~~~~~-----~~~~~i~~~~~dae~l~~~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLA-RMGATVTGVDAVDKNVKIARLHADMD-----PVTSTIEYLCTTAEKLADEGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhc-----CcccceeEEecCHHHhhhccCCCCEEEE
Confidence 45699999999999999999 66778999999999999999875321 0123689999999988655579999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..+++|++|++ .+++++.++|+||
T Consensus 205 ~~vLeHv~d~~--~~L~~l~r~LkPG 228 (322)
T PLN02396 205 LEVIEHVANPA--EFCKSLSALTIPN 228 (322)
T ss_pred hhHHHhcCCHH--HHHHHHHHHcCCC
Confidence 99999999998 9999999999997
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.71 E-value=5.7e-17 Score=146.34 Aligned_cols=102 Identities=15% Similarity=0.040 Sum_probs=85.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||||.++..|+.... .+|+++|+|+.|++.|+++..... .....+++++++|++++++++++||+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~---~~~~~~i~~~~~d~~~lp~~~~sfD~ 148 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKA---KSCYKNIEWIEGDATDLPFDDCYFDA 148 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhh---hccCCCeEEEEcccccCCCCCCCEeE
Confidence 3578999999999999999984433 379999999999999998753210 01234789999999998877679999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++++++||++|++ .+++++.++||||
T Consensus 149 V~~~~~l~~~~d~~--~~l~ei~rvLkpG 175 (261)
T PLN02233 149 ITMGYGLRNVVDRL--KAMQEMYRVLKPG 175 (261)
T ss_pred EEEecccccCCCHH--HHHHHHHHHcCcC
Confidence 99999999999887 9999999999997
No 7
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.71 E-value=8.7e-18 Score=129.72 Aligned_cols=94 Identities=21% Similarity=0.409 Sum_probs=79.9
Q ss_pred eeEeeccccHHHHHHHHhcC-----CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 161 ALDCGSGIGRITKNLLIRYF-----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 161 VLDlGcGtG~lt~~La~~~~-----~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
|||+|||+|+.+..++ +.+ .+++++|+|++|++.++++.... ...++|++.|++++++..++||+|+
T Consensus 1 ILDlgcG~G~~~~~l~-~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-------~~~~~~~~~D~~~l~~~~~~~D~v~ 72 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALA-RRFDAGPSSRVIGVDISPEMLELAKKRFSED-------GPKVRFVQADARDLPFSDGKFDLVV 72 (101)
T ss_dssp -EEET-TTSHHHHHHH-HHS-----SEEEEEES-HHHHHHHHHHSHHT-------TTTSEEEESCTTCHHHHSSSEEEEE
T ss_pred CEEeecCCcHHHHHHH-HHhhhcccceEEEEECCHHHHHHHHHhchhc-------CCceEEEECCHhHCcccCCCeeEEE
Confidence 7999999999999999 554 78999999999999999987542 2378999999999876667999999
Q ss_pred hh-hHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQ-WCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~-~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++ .+++|++++++..+|+++.++|+||
T Consensus 73 ~~~~~~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 73 CSGLSLHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp E-TTGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred EcCCccCCCCHHHHHHHHHHHHHHhCCC
Confidence 95 4599999999999999999999996
No 8
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.70 E-value=2.8e-17 Score=122.83 Aligned_cols=90 Identities=22% Similarity=0.299 Sum_probs=76.7
Q ss_pred eEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHh
Q 024811 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG 241 (262)
Q Consensus 162 LDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~ 241 (262)
||+|||+|+.+..|+.....+|+++|+|+.|++.++++... ..+++...|++++++++++||+|+++.+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~---------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN---------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT---------STEEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc---------cCchheeehHHhCcccccccccccccccee
Confidence 89999999999999944378999999999999999998753 245699999999987778999999999999
Q ss_pred hcCchhHHHHHHHHHhhccCC
Q 024811 242 HLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 242 hltD~el~~~l~~~~~~LkPG 262 (262)
|+++.+ .+++++.++||||
T Consensus 72 ~~~~~~--~~l~e~~rvLk~g 90 (95)
T PF08241_consen 72 HLEDPE--AALREIYRVLKPG 90 (95)
T ss_dssp GSSHHH--HHHHHHHHHEEEE
T ss_pred eccCHH--HHHHHHHHHcCcC
Confidence 996666 9999999999996
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.70 E-value=1.1e-17 Score=148.90 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=76.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
++.+|||+|||||.++..|++... .+|+++|+|+.|++.|++++... ...+++++++|.+++++++++||+|
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~------~~~~i~~v~~da~~lp~~d~sfD~v 120 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE------GLQNIEFVQGDAEDLPFPDNSFDAV 120 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT------T--SEEEEE-BTTB--S-TT-EEEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh------CCCCeeEEEcCHHHhcCCCCceeEE
Confidence 578999999999999999995443 37999999999999999998643 2348999999999998888999999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++.+++++|.+ ++|+++.|+||||
T Consensus 121 ~~~fglrn~~d~~--~~l~E~~RVLkPG 146 (233)
T PF01209_consen 121 TCSFGLRNFPDRE--RALREMYRVLKPG 146 (233)
T ss_dssp EEES-GGG-SSHH--HHHHHHHHHEEEE
T ss_pred EHHhhHHhhCCHH--HHHHHHHHHcCCC
Confidence 9999999999987 9999999999997
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.69 E-value=2.1e-16 Score=142.76 Aligned_cols=136 Identities=17% Similarity=0.187 Sum_probs=105.2
Q ss_pred HhhhhccchhhccccCCCCCCcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCC
Q 024811 110 ISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV 189 (262)
Q Consensus 110 ~~yW~~~~~~~dgvlgGy~~is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s 189 (262)
.+|=+..-..++-++| .+.++...++.+..++..+ ++.++.+|||||||+|..+..|+.....+|+++|+|
T Consensus 14 ~~y~~~~~~~~e~~~g-~~~~~~gg~~~~~~~l~~l--------~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s 84 (263)
T PTZ00098 14 NQYSDEGIKAYEFIFG-EDYISSGGIEATTKILSDI--------ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDIC 84 (263)
T ss_pred cccccccchhHHHHhC-CCCCCCCchHHHHHHHHhC--------CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECC
Confidence 4444444444456665 3556677766666666554 134678999999999999999985445689999999
Q ss_pred HHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 190 SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 190 ~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.|++.|+++... ..++.|.+.|+.+.+.++++||+||++.+++|++..+...+|+++.++|+||
T Consensus 85 ~~~~~~a~~~~~~--------~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG 149 (263)
T PTZ00098 85 EKMVNIAKLRNSD--------KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPN 149 (263)
T ss_pred HHHHHHHHHHcCc--------CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999998642 2368999999987765557999999999999998666669999999999997
No 11
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.68 E-value=2.4e-17 Score=146.13 Aligned_cols=96 Identities=19% Similarity=0.276 Sum_probs=85.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||.|.++++++ +.+.+|+++|+|+++|+.|+.+..+ ..-.++|.+...+++....++||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mA-r~Ga~VtgiD~se~~I~~Ak~ha~e-------~gv~i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLA-RLGASVTGIDASEKPIEVAKLHALE-------SGVNIDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHH-HCCCeeEEecCChHHHHHHHHhhhh-------ccccccchhhhHHHHHhcCCCccEEEE
Confidence 47899999999999999999 7789999999999999999998643 233577888888888655479999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..+++|++|++ .|++.|.+++|||
T Consensus 131 mEVlEHv~dp~--~~~~~c~~lvkP~ 154 (243)
T COG2227 131 MEVLEHVPDPE--SFLRACAKLVKPG 154 (243)
T ss_pred hhHHHccCCHH--HHHHHHHHHcCCC
Confidence 99999999999 9999999999997
No 12
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.68 E-value=1.3e-16 Score=138.07 Aligned_cols=98 Identities=18% Similarity=0.143 Sum_probs=85.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|+.+..|+ +.+.+|+++|+|+.|++.+++++... ...++++++.|+.+++++ ++||+|+|
T Consensus 30 ~~~~vLDiGcG~G~~a~~La-~~g~~V~gvD~S~~~i~~a~~~~~~~------~~~~v~~~~~d~~~~~~~-~~fD~I~~ 101 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLA-ANGFDVTAWDKNPMSIANLERIKAAE------NLDNLHTAVVDLNNLTFD-GEYDFILS 101 (197)
T ss_pred CCCcEEEECCCCCHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHHc------CCCcceEEecChhhCCcC-CCcCEEEE
Confidence 46799999999999999999 55779999999999999999987542 224588999999887664 58999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++||+++.+...+++++.++|+||
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~Lkpg 127 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPG 127 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999888889999999999997
No 13
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=6.2e-16 Score=141.34 Aligned_cols=208 Identities=17% Similarity=0.130 Sum_probs=140.8
Q ss_pred CCeeEEEeccchhHHHHHHHHhhcCCCCCCCCCceeecccCCCCCccCCHHHHHHHHhccccc--hhhhhhHhHhh----
Q 024811 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGE--QQEKKTQWYRE---- 108 (262)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~g~ef~s~~e~W~~~~~~~~~--~~~~~~~wy~~---- 108 (262)
.+.++|+.+||.|++++.++|++.+.. .+++.|.+-|.+.+|.+ |..+|-.+-.+.... .-++...||-.
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~--~~g~~i~v~g~~~~g~~--s~~k~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARL--PPGGEIVVVGEKRDGVR--SAEKMLEKYGGPTKTDSARHCMRLHYYSENPP 112 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhC--CCCCeEEEEecccchHH--HHHHHHHHhcCccccchHhhcceeEeecCCCC
Confidence 678999999999999999999999964 35899999999999998 888887765554100 11222223221
Q ss_pred ---HHhhhhccchhhcccc-CCCCCCcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCC--c
Q 024811 109 ---GISYWEGVEASVDGVL-GGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--E 182 (262)
Q Consensus 109 ---~~~yW~~~~~~~dgvl-gGy~~is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~--~ 182 (262)
...+|.....-.+.-| .--+-+|...++..+++|.+.++.. ...+|||+|||.|.++..|+ +.++ +
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~-------~~~~vlDlGCG~Gvlg~~la-~~~p~~~ 184 (300)
T COG2813 113 PFADEPEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLPPD-------LGGKVLDLGCGYGVLGLVLA-KKSPQAK 184 (300)
T ss_pred cccchhhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCCcc-------CCCcEEEeCCCccHHHHHHH-HhCCCCe
Confidence 1333332221011000 0012245556665666666655522 34599999999999999999 5555 8
Q ss_pred EEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCc--hhH-HHHHHHHHhhc
Q 024811 183 VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD--DDF-VSFFKRAKVNH 259 (262)
Q Consensus 183 V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD--~el-~~~l~~~~~~L 259 (262)
++++|.|...|+.|++++..- ...+..++.+|+.+-.. ++||+|+||.+||-=-+ ..+ .++|....+.|
T Consensus 185 vtmvDvn~~Av~~ar~Nl~~N------~~~~~~v~~s~~~~~v~--~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L 256 (300)
T COG2813 185 LTLVDVNARAVESARKNLAAN------GVENTEVWASNLYEPVE--GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHL 256 (300)
T ss_pred EEEEecCHHHHHHHHHhHHHc------CCCccEEEEeccccccc--ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhh
Confidence 999999999999999998642 22233566666665332 48999999999874332 222 26999999999
Q ss_pred cCC
Q 024811 260 SQT 262 (262)
Q Consensus 260 kPG 262 (262)
++|
T Consensus 257 ~~g 259 (300)
T COG2813 257 KPG 259 (300)
T ss_pred ccC
Confidence 987
No 14
>PLN02244 tocopherol O-methyltransferase
Probab=99.67 E-value=4.9e-16 Score=145.28 Aligned_cols=100 Identities=18% Similarity=0.252 Sum_probs=86.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||||||+|.++..|+...+.+|++||+|+.|++.|+++.... ....+++|+++|+.++++++++||+||
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~-----g~~~~v~~~~~D~~~~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQ-----GLSDKVSFQVADALNQPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEEcCcccCCCCCCCccEEE
Confidence 456799999999999999999555679999999999999999876532 122468999999998876668999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+..+++|++|.. .+|+++.++|+||
T Consensus 192 s~~~~~h~~d~~--~~l~e~~rvLkpG 216 (340)
T PLN02244 192 SMESGEHMPDKR--KFVQELARVAAPG 216 (340)
T ss_pred ECCchhccCCHH--HHHHHHHHHcCCC
Confidence 999999999877 9999999999997
No 15
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.67 E-value=1.8e-16 Score=123.35 Aligned_cols=99 Identities=20% Similarity=0.147 Sum_probs=81.2
Q ss_pred CceeeEeeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCC-CCCCCCCCccchhh
Q 024811 158 HLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRYDVIW 235 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~-~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~-~~~~~~~~~yDlI~ 235 (262)
+.+|||+|||+|+++..+++. .+.+|++||+|+.|++.|++++... ....+++|++.|+ ..+... ++||+|+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~-~~~D~v~ 75 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE-----GLSDRITFVQGDAEFDPDFL-EPFDLVI 75 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT-----TTTTTEEEEESCCHGGTTTS-SCEEEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEECccccCcccC-CCCCEEE
Confidence 678999999999999999952 6778999999999999999998332 1346899999999 444433 5799999
Q ss_pred hhh-HHhhcCc-hhHHHHHHHHHhhccCC
Q 024811 236 VQW-CIGHLTD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~-vl~hltD-~el~~~l~~~~~~LkPG 262 (262)
+.+ +++++.+ ++..++++++.+.|+||
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pg 104 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPG 104 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCC
Confidence 999 6665654 46668999999999996
No 16
>PRK05785 hypothetical protein; Provisional
Probab=99.64 E-value=7.7e-16 Score=136.27 Aligned_cols=89 Identities=10% Similarity=0.110 Sum_probs=77.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||||.++..|+.....+|+++|+|++|++.|+++. .++++|++++++++++||+|+|
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d~~~lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------DKVVGSFEALPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------ceEEechhhCCCCCCCEEEEEe
Confidence 36799999999999999999443468999999999999998742 3567888888777789999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
++++||++|++ ++++++.++|+|
T Consensus 117 ~~~l~~~~d~~--~~l~e~~RvLkp 139 (226)
T PRK05785 117 SFALHASDNIE--KVIAEFTRVSRK 139 (226)
T ss_pred cChhhccCCHH--HHHHHHHHHhcC
Confidence 99999999988 999999999998
No 17
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.64 E-value=4e-16 Score=139.61 Aligned_cols=90 Identities=19% Similarity=0.270 Sum_probs=78.9
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..|+... ..+|+++|+|+.|++.|++. +++|+++|++++.+ .++||+|+
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~~~~~-~~~fD~v~ 94 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------GVDARTGDVRDWKP-KPDTDVVV 94 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------CCcEEEcChhhCCC-CCCceEEE
Confidence 56899999999999999999442 35799999999999999763 46789999998854 46999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+.++||++|++ .+++++.++|+||
T Consensus 95 ~~~~l~~~~d~~--~~l~~~~~~Lkpg 119 (255)
T PRK14103 95 SNAALQWVPEHA--DLLVRWVDELAPG 119 (255)
T ss_pred EehhhhhCCCHH--HHHHHHHHhCCCC
Confidence 999999999877 9999999999997
No 18
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.62 E-value=1e-15 Score=137.08 Aligned_cols=95 Identities=17% Similarity=0.294 Sum_probs=81.5
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCc----ceEEEEcCCCCCCCCCCccch
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK----ATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~----~v~f~~~d~~~~~~~~~~yDl 233 (262)
+.+|||+|||+|-+|++|+ +.+.+|++||+|+.|++.|++.. ...+. ... +++|.+.+.+++. +.||+
T Consensus 90 g~~ilDvGCGgGLLSepLA-rlga~V~GID~s~~~V~vA~~h~-~~dP~---~~~~~~y~l~~~~~~~E~~~---~~fDa 161 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLA-RLGAQVTGIDASDDMVEVANEHK-KMDPV---LEGAIAYRLEYEDTDVEGLT---GKFDA 161 (282)
T ss_pred CceEEEeccCccccchhhH-hhCCeeEeecccHHHHHHHHHhh-hcCch---hccccceeeehhhcchhhcc---cccce
Confidence 4679999999999999999 88999999999999999999983 22221 122 4678888888874 35999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|+.+++|+.|++ .|+..|.+.|+||
T Consensus 162 VvcsevleHV~dp~--~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 162 VVCSEVLEHVKDPQ--EFLNCLSALLKPN 188 (282)
T ss_pred eeeHHHHHHHhCHH--HHHHHHHHHhCCC
Confidence 99999999999999 9999999999996
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.62 E-value=9.4e-16 Score=137.33 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=84.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++.... ...+++++++|++++. ..+++||+|+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la-~~g~~v~~vD~s~~~l~~a~~~~~~~g-----~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLA-ELGHQVILCDLSAEMIQRAKQAAEAKG-----VSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCEEEEeCCCchHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHhcC-----CccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 46799999999999999999 567899999999999999999875421 1246889999998774 2346899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+..+++|+++++ .+|+++.++|+||
T Consensus 118 ~~~vl~~~~~~~--~~l~~~~~~Lkpg 142 (255)
T PRK11036 118 FHAVLEWVADPK--SVLQTLWSVLRPG 142 (255)
T ss_pred ehhHHHhhCCHH--HHHHHHHHHcCCC
Confidence 999999999988 9999999999997
No 20
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.61 E-value=1.2e-15 Score=125.97 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=82.9
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yD 232 (262)
+..+|||+|||+|.++..|+... ..++++||.|+.|++.|++.+... ...++.|+++|+++++ .+ +.||
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~------~~~ni~~~~~d~~~l~~~~~-~~~D 75 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL------GLDNIEFIQGDIEDLPQELE-EKFD 75 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT------TSTTEEEEESBTTCGCGCSS-TTEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc------cccccceEEeehhccccccC-CCee
Confidence 46799999999999999999433 458999999999999999987543 2348999999999975 33 6899
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++..+++|+++++ .+|+++.+.|+||
T Consensus 76 ~I~~~~~l~~~~~~~--~~l~~~~~~lk~~ 103 (152)
T PF13847_consen 76 IIISNGVLHHFPDPE--KVLKNIIRLLKPG 103 (152)
T ss_dssp EEEEESTGGGTSHHH--HHHHHHHHHEEEE
T ss_pred EEEEcCchhhccCHH--HHHHHHHHHcCCC
Confidence 999999999999998 9999999999975
No 21
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.61 E-value=1.4e-15 Score=135.83 Aligned_cols=93 Identities=20% Similarity=0.309 Sum_probs=81.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
.++.+|||+|||+|.++..|+... ..+|++||+|+.|++.|++++. ++.|+.+|+.++.+. .+||+|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----------~~~~~~~d~~~~~~~-~~fD~v 97 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----------DCQFVEADIASWQPP-QALDLI 97 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----------CCeEEECchhccCCC-CCccEE
Confidence 357899999999999999999543 3589999999999999998752 578999999887654 599999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|+.++||++|.. .+|+++.++|+||
T Consensus 98 ~~~~~l~~~~d~~--~~l~~~~~~Lkpg 123 (258)
T PRK01683 98 FANASLQWLPDHL--ELFPRLVSLLAPG 123 (258)
T ss_pred EEccChhhCCCHH--HHHHHHHHhcCCC
Confidence 9999999999877 9999999999997
No 22
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.61 E-value=5e-15 Score=132.37 Aligned_cols=99 Identities=8% Similarity=0.132 Sum_probs=83.9
Q ss_pred CCceeeEeeccccHHHHHHHHh---cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~---~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
++.+|||+|||+|.++..|+.. ...+|+++|+|+.|++.|++++.... ...+++++++|+.+++++ .||+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~-----~~~~v~~~~~d~~~~~~~--~~D~ 128 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-----APTPVDVIEGDIRDIAIE--NASM 128 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-----CCCCeEEEeCChhhCCCC--CCCE
Confidence 4679999999999999999842 23589999999999999999985421 123689999999988653 5999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++++++||+++++...+++++.+.|+||
T Consensus 129 vv~~~~l~~l~~~~~~~~l~~i~~~LkpG 157 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLDKIYQGLNPG 157 (247)
T ss_pred EehhhHHHhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999887778999999999997
No 23
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.61 E-value=1.2e-15 Score=135.87 Aligned_cols=92 Identities=16% Similarity=0.251 Sum_probs=81.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ ..+.+|+++|+|+.|++.|+++.. ...++++|++++++.+++||+|+|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~-~~~~~v~~~D~s~~~l~~a~~~~~-----------~~~~~~~d~~~~~~~~~~fD~V~s 109 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWR-ERGSQVTALDLSPPMLAQARQKDA-----------ADHYLAGDIESLPLATATFDLAWS 109 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHH-HcCCeEEEEECCHHHHHHHHhhCC-----------CCCEEEcCcccCcCCCCcEEEEEE
Confidence 46789999999999999998 567899999999999999998752 246889999988766678999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+++|+.|.+ .+|.++.++|+||
T Consensus 110 ~~~l~~~~d~~--~~l~~~~~~Lk~g 133 (251)
T PRK10258 110 NLAVQWCGNLS--TALRELYRVVRPG 133 (251)
T ss_pred CchhhhcCCHH--HHHHHHHHHcCCC
Confidence 99999999987 9999999999996
No 24
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.60 E-value=3e-14 Score=135.06 Aligned_cols=205 Identities=13% Similarity=0.164 Sum_probs=128.9
Q ss_pred CCeeEEEeccchhHHHHHHHHhhcCCCCCCCCCceeecccCCCCC-ccCCHHHHHHHHhccccchhhhhhHhHh----hH
Q 024811 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGK-EFKNAEEMWREQIGEDGEQQEKKTQWYR----EG 109 (262)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~g~-ef~s~~e~W~~~~~~~~~~~~~~~~wy~----~~ 109 (262)
.+.++|+.+|+.|+++.-++.+.++... ++..++-|.+..|. . +..+.-.+.+++ .. ....|.. .+
T Consensus 106 ~~d~vl~~~PK~~~~l~~~l~~l~~~l~---~~~~ii~g~~~k~i~~--~~~~~~~k~l~~-~~---~~~~~~kaR~~~~ 176 (378)
T PRK15001 106 QPGVVLIKVPKTLALLEQQLRALRKVVT---SDTRIIAGAKARDIHT--STLELFEKVLGP-TT---TTLAWKKARLINC 176 (378)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHhhCC---CCCEEEEEEecCCCcH--HHHHHHHHHhCc-cc---hhhhhhhhhheec
Confidence 4679999999999999999998877542 44445566665544 3 444455555554 11 1111110 00
Q ss_pred Hhh------------hhc--cchhhccccCCCCCCcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHH
Q 024811 110 ISY------------WEG--VEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNL 175 (262)
Q Consensus 110 ~~y------------W~~--~~~~~dgvlgGy~~is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~L 175 (262)
.-| |.- ..-++.. +. +-+|...++....+|...++.. ...+|||+|||+|.++..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--gVFs~~~LD~GtrllL~~lp~~-------~~~~VLDLGCGtGvi~i~l 246 (378)
T PRK15001 177 TFNEPPLADAPQTVSWKLEGTDWTIHN-HA--NVFSRTGLDIGARFFMQHLPEN-------LEGEIVDLGCGNGVIGLTL 246 (378)
T ss_pred cCCCCCCcCCCceeEEEEcCceEEEEe-cC--CccCCCCcChHHHHHHHhCCcc-------cCCeEEEEeccccHHHHHH
Confidence 111 110 0001100 01 1234444555556665555421 2468999999999999999
Q ss_pred HHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhc---CchhHHHH
Q 024811 176 LIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHL---TDDDFVSF 251 (262)
Q Consensus 176 a~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hl---tD~el~~~ 251 (262)
++.. ..+|+++|.|+.|++.|++++..... ....+++|+..|..+..+ ..+||+|+||.++|.. ++....++
T Consensus 247 a~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~---~~~~~v~~~~~D~l~~~~-~~~fDlIlsNPPfh~~~~~~~~ia~~l 322 (378)
T PRK15001 247 LDKNPQAKVVFVDESPMAVASSRLNVETNMP---EALDRCEFMINNALSGVE-PFRFNAVLCNPPFHQQHALTDNVAWEM 322 (378)
T ss_pred HHhCCCCEEEEEECCHHHHHHHHHHHHHcCc---ccCceEEEEEccccccCC-CCCEEEEEECcCcccCccCCHHHHHHH
Confidence 9443 34799999999999999998753210 112367888888865433 2589999999888653 34444579
Q ss_pred HHHHHhhccCC
Q 024811 252 FKRAKVNHSQT 262 (262)
Q Consensus 252 l~~~~~~LkPG 262 (262)
|+.+.+.|+||
T Consensus 323 ~~~a~~~LkpG 333 (378)
T PRK15001 323 FHHARRCLKIN 333 (378)
T ss_pred HHHHHHhcccC
Confidence 99999999997
No 25
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.60 E-value=5.7e-15 Score=128.94 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=78.2
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||+|||+|..+..|+... +.++++||+|+.|++.|++++. .+.++++|+.+ +..+++||+|+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------~~~~~~~d~~~-~~~~~sfD~V~ 110 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------NINIIQGSLFD-PFKDNFFDLVL 110 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------CCcEEEeeccC-CCCCCCEEEEE
Confidence 46789999999999999998442 5689999999999999998752 45778888887 44457999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhcc
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHS 260 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~Lk 260 (262)
++.+++|++++++.++++++.++++
T Consensus 111 ~~~vL~hl~p~~~~~~l~el~r~~~ 135 (204)
T TIGR03587 111 TKGVLIHINPDNLPTAYRELYRCSN 135 (204)
T ss_pred ECChhhhCCHHHHHHHHHHHHhhcC
Confidence 9999999987778899999999875
No 26
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.60 E-value=2.4e-15 Score=130.05 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=81.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|+++..|+ +.+.+|+++|+|+.|++.++++.... .. .+.+...|+..++++ ++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la-~~g~~V~~iD~s~~~l~~a~~~~~~~------~~-~v~~~~~d~~~~~~~-~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLS-LAGYDVRAWDHNPASIASVLDMKARE------NL-PLRTDAYDINAAALN-EDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHH-HCCCeEEEEECCHHHHHHHHHHHHHh------CC-CceeEeccchhcccc-CCCCEEEE
Confidence 35799999999999999999 55678999999999999999876432 11 367777888766554 58999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++||+++++...+++++.++|+||
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~Lkpg 126 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPG 126 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCC
Confidence 99999998887789999999999997
No 27
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.59 E-value=5.2e-17 Score=124.50 Aligned_cols=95 Identities=23% Similarity=0.315 Sum_probs=60.6
Q ss_pred eEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHH
Q 024811 162 LDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCI 240 (262)
Q Consensus 162 LDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl 240 (262)
||+|||+|+++..++... ..+++++|+|+.|++.|++++...... ....+++...+..+..+. ++||+|++..++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND---NFERLRFDVLDLFDYDPP-ESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC-----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc---ceeEEEeecCChhhcccc-cccceehhhhhH
Confidence 799999999999999442 558999999999999999988653210 111233333333333222 599999999999
Q ss_pred hhcCchhHHHHHHHHHhhccCC
Q 024811 241 GHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 241 ~hltD~el~~~l~~~~~~LkPG 262 (262)
||+.+.+ .++++++++|+||
T Consensus 77 ~~l~~~~--~~l~~~~~~L~pg 96 (99)
T PF08242_consen 77 HHLEDIE--AVLRNIYRLLKPG 96 (99)
T ss_dssp S--S-HH--HHHHHHTTT-TSS
T ss_pred hhhhhHH--HHHHHHHHHcCCC
Confidence 9996655 9999999999997
No 28
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.58 E-value=9.7e-15 Score=128.08 Aligned_cols=99 Identities=11% Similarity=0.073 Sum_probs=84.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|.++..++.... .+|+++|+|+.|++.|++++... ...+++++++|+++++++.++||+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~fD~ 117 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA------GLHNVELVHGNAMELPFDDNSFDY 117 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc------CCCceEEEEechhcCCCCCCCccE
Confidence 3577999999999999999995432 48999999999999999987532 234789999999887655579999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++.++++|+++.. ++++++.++|+||
T Consensus 118 V~~~~~l~~~~~~~--~~l~~~~~~Lk~g 144 (231)
T TIGR02752 118 VTIGFGLRNVPDYM--QVLREMYRVVKPG 144 (231)
T ss_pred EEEecccccCCCHH--HHHHHHHHHcCcC
Confidence 99999999999887 9999999999997
No 29
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.56 E-value=1.4e-14 Score=131.88 Aligned_cols=119 Identities=17% Similarity=0.209 Sum_probs=87.0
Q ss_pred ccchhhH-HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCC
Q 024811 132 EVDIKGS-EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM 210 (262)
Q Consensus 132 ~~di~~s-~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~ 210 (262)
+.+++.. .+-+..++. ++ ++.++.+|||||||+|.++..++++.+.+|++|.+|++..+.+++++..+. .
T Consensus 40 ~~~Le~AQ~~k~~~~~~-~~---~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~g-----l 110 (273)
T PF02353_consen 40 DDTLEEAQERKLDLLCE-KL---GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAG-----L 110 (273)
T ss_dssp T--HHHHHHHHHHHHHT-TT---T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCST-----S
T ss_pred hhhHHHHHHHHHHHHHH-Hh---CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcC-----C
Confidence 4445443 333445444 33 467899999999999999999997768899999999999999999987542 2
Q ss_pred CcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 211 HKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 211 ~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
...+++...|..+++. +||.|+|-.++.|+..+....||+++.++|+||
T Consensus 111 ~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg 159 (273)
T PF02353_consen 111 EDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG 159 (273)
T ss_dssp SSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT
T ss_pred CCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCC
Confidence 3468899999887743 899999999999999888889999999999997
No 30
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.56 E-value=1.3e-14 Score=128.51 Aligned_cols=99 Identities=9% Similarity=0.168 Sum_probs=84.0
Q ss_pred CCceeeEeeccccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~---~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
++.+|||+|||+|..+..+++.. ..+|+++|+|+.|++.|++++.... ...+++++++|+.+++++ .+|+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-----~~~~v~~~~~d~~~~~~~--~~d~ 125 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-----SEIPVEILCNDIRHVEIK--NASM 125 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-----CCCCeEEEECChhhCCCC--CCCE
Confidence 46789999999999999999432 3479999999999999999875421 123689999999988653 5999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++++++||+++++...+|+++.++|+||
T Consensus 126 v~~~~~l~~~~~~~~~~~l~~i~~~Lkpg 154 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLTKIYEGLNPN 154 (239)
T ss_pred EeeecchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999888779999999999997
No 31
>PRK06202 hypothetical protein; Provisional
Probab=99.56 E-value=4.6e-15 Score=130.92 Aligned_cols=96 Identities=22% Similarity=0.279 Sum_probs=77.6
Q ss_pred CCceeeEeeccccHHHHHHHHh---cC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCcc
Q 024811 157 QHLVALDCGSGIGRITKNLLIR---YF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~---~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~y 231 (262)
++.+|||+|||+|.++..|+.. .+ .+|+++|+|+.|++.|+++... .++.+...+..+++..+++|
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------~~~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---------PGVTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---------CCCeEEEEecccccccCCCc
Confidence 4679999999999999998832 12 3899999999999999987532 24566666655554444799
Q ss_pred chhhhhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 232 DVIWVQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 232 DlI~s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
|+|+|+.++||++|+++..+|+++.++++.
T Consensus 131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~~ 160 (232)
T PRK06202 131 DVVTSNHFLHHLDDAEVVRLLADSAALARR 160 (232)
T ss_pred cEEEECCeeecCChHHHHHHHHHHHHhcCe
Confidence 999999999999999888999999998864
No 32
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.55 E-value=2.1e-14 Score=139.11 Aligned_cols=98 Identities=18% Similarity=0.140 Sum_probs=84.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.++..|+.....+|+++|+|+.|++.|+++... ...++.|+++|+.+.++++++||+|+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~-------~~~~v~~~~~d~~~~~~~~~~fD~I~ 337 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG-------RKCSVEFEVADCTKKTYPDNSFDVIY 337 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc-------CCCceEEEEcCcccCCCCCCCEEEEE
Confidence 35679999999999999999955566899999999999999987642 12368999999988765557899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|..+++|++|++ .+|+++.++|+||
T Consensus 338 s~~~l~h~~d~~--~~l~~~~r~Lkpg 362 (475)
T PLN02336 338 SRDTILHIQDKP--ALFRSFFKWLKPG 362 (475)
T ss_pred ECCcccccCCHH--HHHHHHHHHcCCC
Confidence 999999999988 9999999999997
No 33
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.55 E-value=1.2e-14 Score=132.67 Aligned_cols=96 Identities=18% Similarity=0.132 Sum_probs=83.3
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
+.+|||+|||+|+.+..|+ ..+.+|+++|.|+.|++.+++++... ..++++.+.|+.+... +++||+|+++
T Consensus 121 ~~~vLDlGcG~G~~~~~la-~~g~~V~avD~s~~ai~~~~~~~~~~-------~l~v~~~~~D~~~~~~-~~~fD~I~~~ 191 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLA-LLGFDVTAVDINQQSLENLQEIAEKE-------NLNIRTGLYDINSASI-QEEYDFILST 191 (287)
T ss_pred CCCEEEeCCCCCHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHc-------CCceEEEEechhcccc-cCCccEEEEc
Confidence 4599999999999999999 55778999999999999999887532 1267888888887655 4689999999
Q ss_pred hHHhhcCchhHHHHHHHHHhhccCC
Q 024811 238 WCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 238 ~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.++||++++++..+++++.++|+||
T Consensus 192 ~vl~~l~~~~~~~~l~~~~~~Lkpg 216 (287)
T PRK12335 192 VVLMFLNRERIPAIIKNMQEHTNPG 216 (287)
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999888889999999999997
No 34
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.55 E-value=9.5e-15 Score=127.77 Aligned_cols=93 Identities=19% Similarity=0.278 Sum_probs=83.5
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
.....+|.|+|||+|+.|+.|+ +++ ..+++||-|++||+.|++++ ++.+|..+|+.+|.|+ .+.|
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~-~RwP~A~i~GiDsS~~Mla~Aa~rl-----------p~~~f~~aDl~~w~p~-~~~d 94 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLA-RRWPDAVITGIDSSPAMLAKAAQRL-----------PDATFEEADLRTWKPE-QPTD 94 (257)
T ss_pred ccccceeeecCCCCCHHHHHHH-HhCCCCeEeeccCCHHHHHHHHHhC-----------CCCceecccHhhcCCC-Cccc
Confidence 3457899999999999999999 554 47999999999999999876 3789999999999986 6999
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++|-+|++++|.- .+|.++-..|.||
T Consensus 95 llfaNAvlqWlpdH~--~ll~rL~~~L~Pg 122 (257)
T COG4106 95 LLFANAVLQWLPDHP--ELLPRLVSQLAPG 122 (257)
T ss_pred hhhhhhhhhhccccH--HHHHHHHHhhCCC
Confidence 999999999999977 8999999999997
No 35
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.54 E-value=8.8e-15 Score=126.65 Aligned_cols=96 Identities=25% Similarity=0.338 Sum_probs=79.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
...++||+|||+|.+|..|+ .++.+++++|.|+..|+.|++++.. .++++|+..|+.++.|+ ++||+|++
T Consensus 43 ry~~alEvGCs~G~lT~~LA-~rCd~LlavDis~~Al~~Ar~Rl~~--------~~~V~~~~~dvp~~~P~-~~FDLIV~ 112 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLA-PRCDRLLAVDISPRALARARERLAG--------LPHVEWIQADVPEFWPE-GRFDLIVL 112 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHG-GGEEEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT---S-S-EEEEEE
T ss_pred ccceeEecCCCccHHHHHHH-HhhCceEEEeCCHHHHHHHHHhcCC--------CCCeEEEECcCCCCCCC-CCeeEEEE
Confidence 45789999999999999999 7789999999999999999999864 35899999999998775 79999999
Q ss_pred hhHHhhcCc-hhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD-~el~~~l~~~~~~LkPG 262 (262)
+.+++||++ +++..++.++..+|+||
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pg 139 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPG 139 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCC
Confidence 999999997 57889999999999986
No 36
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=4.7e-14 Score=128.48 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=89.4
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
++.++.+|||||||+|.+++.+++++..+|++|++|+++.+.+++++... ....++++...|+.++. ++||-
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~-----gl~~~v~v~l~d~rd~~---e~fDr 140 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAAR-----GLEDNVEVRLQDYRDFE---EPFDR 140 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHc-----CCCcccEEEeccccccc---cccce
Confidence 47789999999999999999999776789999999999999999988653 12347899999999884 35999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|-..++|+..+....||+++.+.|+||
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~~~ 169 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLKPG 169 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcCCC
Confidence 99999999999987779999999999997
No 37
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.52 E-value=5.6e-14 Score=123.58 Aligned_cols=105 Identities=10% Similarity=-0.053 Sum_probs=83.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccccccc------CCCCCcceEEEEcCCCCCCCC-CC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------APDMHKATNFFCVPLQDFTPE-TG 229 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~------~~~~~~~v~f~~~d~~~~~~~-~~ 229 (262)
++.+|||+|||.|+.+..|+ +.+.+|++||+|+.+++.+.+........ ......+++++++|+.++.+. .+
T Consensus 34 ~~~rvLd~GCG~G~da~~LA-~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLA-EQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCeEEEeCCCchhHHHHHH-hCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 46799999999999999999 77889999999999999864422110000 000134689999999998653 35
Q ss_pred ccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+||+||-..+++|++.++...+++.+.++|+||
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg 145 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPG 145 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCC
Confidence 799999999999999888788999999999997
No 38
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.52 E-value=4.7e-14 Score=136.71 Aligned_cols=97 Identities=21% Similarity=0.342 Sum_probs=82.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCC--CCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~--~~~~~~~yDlI 234 (262)
++.+|||||||+|+++..|+ +.+.+|+++|+|+.|++.+++... ...++.++++|+.+ ++++.++||+|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la-~~~~~v~giD~s~~~l~~a~~~~~--------~~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELA-KKAGQVIALDFIESVIKKNESING--------HYKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHH-hhCCEEEEEeCCHHHHHHHHHHhc--------cCCceEEEEecccccccCCCCCCEEEE
Confidence 45689999999999999999 567899999999999998876321 13478899999863 44445789999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
||+++++|++++++..+++++.+.|+||
T Consensus 108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~g 135 (475)
T PLN02336 108 FSNWLLMYLSDKEVENLAERMVKWLKVG 135 (475)
T ss_pred ehhhhHHhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999988889999999999997
No 39
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.51 E-value=4.3e-14 Score=127.38 Aligned_cols=99 Identities=20% Similarity=0.092 Sum_probs=83.8
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|..+..++...+. +|+++|+|+.|++.|+++.... ...+++|+.+|+++++..++.||+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~------g~~~v~~~~~d~~~l~~~~~~fD~ 149 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA------GYTNVEFRLGEIEALPVADNSVDV 149 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc------CCCCEEEEEcchhhCCCCCCceeE
Confidence 45789999999999998887744443 6999999999999999987532 224788999999987665578999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+++.+++|+++.. .+|+++.++|+||
T Consensus 150 Vi~~~v~~~~~d~~--~~l~~~~r~LkpG 176 (272)
T PRK11873 150 IISNCVINLSPDKE--RVFKEAFRVLKPG 176 (272)
T ss_pred EEEcCcccCCCCHH--HHHHHHHHHcCCC
Confidence 99999999998877 8999999999997
No 40
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.50 E-value=3.6e-14 Score=123.02 Aligned_cols=97 Identities=20% Similarity=0.115 Sum_probs=79.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
+++++||+|||.||.+..|+ +.+-.|+++|.|+.+++.+++..... .-.++..+.|+.++.++ +.||+|+|
T Consensus 30 ~~g~~LDlgcG~GRNalyLA-~~G~~VtAvD~s~~al~~l~~~a~~~-------~l~i~~~~~Dl~~~~~~-~~yD~I~s 100 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLA-SQGFDVTAVDISPVALEKLQRLAEEE-------GLDIRTRVADLNDFDFP-EEYDFIVS 100 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHH-HTT-EEEEEESSHHHHHHHHHHHHHT-------T-TEEEEE-BGCCBS-T-TTEEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHH-HCCCeEEEEECCHHHHHHHHHHHhhc-------CceeEEEEecchhcccc-CCcCEEEE
Confidence 47799999999999999999 66778999999999999988765331 22488899999999875 68999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..+++|+..+.+.++++++...++||
T Consensus 101 t~v~~fL~~~~~~~i~~~m~~~~~pG 126 (192)
T PF03848_consen 101 TVVFMFLQRELRPQIIENMKAATKPG 126 (192)
T ss_dssp ESSGGGS-GGGHHHHHHHHHHTEEEE
T ss_pred EEEeccCCHHHHHHHHHHHHhhcCCc
Confidence 99999999998889999999999997
No 41
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.50 E-value=6.2e-14 Score=121.98 Aligned_cols=93 Identities=22% Similarity=0.308 Sum_probs=80.5
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
+.+|||+|||+|.++..|+... ..+|+++|+|+.|++.+++.+. .++.++.+|+.+.+..+++||+|++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~fD~vi~ 104 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------ENVQFICGDAEKLPLEDSSFDLIVS 104 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecchhhCCCCCCceeEEEE
Confidence 4689999999999999999443 2357999999999999998763 2678999999988755578999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++||+.|.. .+|.++.++|+||
T Consensus 105 ~~~l~~~~~~~--~~l~~~~~~L~~~ 128 (240)
T TIGR02072 105 NLALQWCDDLS--QALSELARVLKPG 128 (240)
T ss_pred hhhhhhccCHH--HHHHHHHHHcCCC
Confidence 99999999877 9999999999996
No 42
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.50 E-value=4.9e-14 Score=131.08 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=80.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
.+.+|||||||+|.++..++......|.+||+|+.|+..++...... ....++.|+.+|+++++. .++||+|+|
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~-----~~~~~i~~~~~d~e~lp~-~~~FD~V~s 195 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLL-----GNDQRAHLLPLGIEQLPA-LKAFDTVFS 195 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhc-----CCCCCeEEEeCCHHHCCC-cCCcCEEEE
Confidence 46799999999999999999544456999999999998655432111 012368999999999876 578999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..+++|+.|+. .+|+++++.|+||
T Consensus 196 ~~vl~H~~dp~--~~L~~l~~~LkpG 219 (322)
T PRK15068 196 MGVLYHRRSPL--DHLKQLKDQLVPG 219 (322)
T ss_pred CChhhccCCHH--HHHHHHHHhcCCC
Confidence 99999999987 9999999999997
No 43
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.49 E-value=3.1e-14 Score=116.59 Aligned_cols=98 Identities=22% Similarity=0.261 Sum_probs=75.4
Q ss_pred HHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEc
Q 024811 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (262)
Q Consensus 140 ~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~ 219 (262)
.++..+.+. ..++.+|||+|||+|.++..|. +.+.+|+++|+|+.+++. . +..+...
T Consensus 11 ~~~~~~~~~------~~~~~~vLDiGcG~G~~~~~l~-~~~~~~~g~D~~~~~~~~--~--------------~~~~~~~ 67 (161)
T PF13489_consen 11 DLLERLLPR------LKPGKRVLDIGCGTGSFLRALA-KRGFEVTGVDISPQMIEK--R--------------NVVFDNF 67 (161)
T ss_dssp HHHHHHHTC------TTTTSEEEEESSTTSHHHHHHH-HTTSEEEEEESSHHHHHH--T--------------TSEEEEE
T ss_pred HHHHHHhcc------cCCCCEEEEEcCCCCHHHHHHH-HhCCEEEEEECCHHHHhh--h--------------hhhhhhh
Confidence 445555531 2357899999999999999997 667799999999999999 1 1222222
Q ss_pred CCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 220 d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++..+.+++||+|+|+.+|+|++|+. .+|+++.++|+||
T Consensus 68 ~~~~~~~~~~~fD~i~~~~~l~~~~d~~--~~l~~l~~~Lkpg 108 (161)
T PF13489_consen 68 DAQDPPFPDGSFDLIICNDVLEHLPDPE--EFLKELSRLLKPG 108 (161)
T ss_dssp ECHTHHCHSSSEEEEEEESSGGGSSHHH--HHHHHHHHCEEEE
T ss_pred hhhhhhccccchhhHhhHHHHhhcccHH--HHHHHHHHhcCCC
Confidence 2223333347999999999999999877 9999999999986
No 44
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.49 E-value=1.3e-13 Score=120.49 Aligned_cols=97 Identities=15% Similarity=0.215 Sum_probs=82.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++ ....+|+++|+|+.|++.|++++.... ...++.|.++|+.+.+ ++||+|++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la-~~~~~v~gvD~s~~~i~~a~~~~~~~~-----~~~~i~~~~~d~~~~~---~~fD~ii~ 125 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELA-KRGAIVKAVDISEQMVQMARNRAQGRD-----VAGNVEFEVNDLLSLC---GEFDIVVC 125 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcC-----CCCceEEEECChhhCC---CCcCEEEE
Confidence 47799999999999999999 557789999999999999999875321 1136899999998764 58999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..+++|++++++..+++++.+.+++|
T Consensus 126 ~~~l~~~~~~~~~~~l~~i~~~~~~~ 151 (219)
T TIGR02021 126 MDVLIHYPASDMAKALGHLASLTKER 151 (219)
T ss_pred hhHHHhCCHHHHHHHHHHHHHHhCCC
Confidence 99999998887888999999988875
No 45
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.49 E-value=1.6e-13 Score=119.79 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=79.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++.... ...+++|..+|+... .++||+|++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~-~~~~~v~~~D~s~~~i~~a~~~~~~~~-----~~~~i~~~~~d~~~~---~~~fD~v~~ 133 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLA-RRGAKVVASDISPQMVEEARERAPEAG-----LAGNITFEVGDLESL---LGRFDTVVC 133 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHhcC-----CccCcEEEEcCchhc---cCCcCEEEE
Confidence 46799999999999999999 556789999999999999999875421 113688998885432 368999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
+.+++|++++++..+++++.+.+++
T Consensus 134 ~~~l~~~~~~~~~~~l~~l~~~~~~ 158 (230)
T PRK07580 134 LDVLIHYPQEDAARMLAHLASLTRG 158 (230)
T ss_pred cchhhcCCHHHHHHHHHHHHhhcCC
Confidence 9999999999888999999887765
No 46
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.48 E-value=7.9e-14 Score=129.33 Aligned_cols=98 Identities=15% Similarity=0.087 Sum_probs=79.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++......|++||+|+.|+..++..-... ....++.+...+++++++. .+||+|+|
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~-----~~~~~v~~~~~~ie~lp~~-~~FD~V~s 194 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLL-----DNDKRAILEPLGIEQLHEL-YAFDTVFS 194 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHh-----ccCCCeEEEECCHHHCCCC-CCcCEEEE
Confidence 46799999999999999999444457999999999998754321111 0123677888999888654 58999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+++|+.++. .+|++++++|+||
T Consensus 195 ~gvL~H~~dp~--~~L~el~r~LkpG 218 (314)
T TIGR00452 195 MGVLYHRKSPL--EHLKQLKHQLVIK 218 (314)
T ss_pred cchhhccCCHH--HHHHHHHHhcCCC
Confidence 99999999987 9999999999997
No 47
>PRK08317 hypothetical protein; Provisional
Probab=99.47 E-value=3.3e-13 Score=117.13 Aligned_cols=99 Identities=18% Similarity=0.177 Sum_probs=84.0
Q ss_pred CCCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
..++.+|||+|||+|.++..++... ..+|+++|+|+.+++.++++... ...++++...|+++++...++||
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~D 89 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-------LGPNVEFVRGDADGLPFPDGSFD 89 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-------CCCceEEEecccccCCCCCCCce
Confidence 3457799999999999999999543 24799999999999999997322 23478999999988765557899
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++..+++|+.+++ .+++++.++|+||
T Consensus 90 ~v~~~~~~~~~~~~~--~~l~~~~~~L~~g 117 (241)
T PRK08317 90 AVRSDRVLQHLEDPA--RALAEIARVLRPG 117 (241)
T ss_pred EEEEechhhccCCHH--HHHHHHHHHhcCC
Confidence 999999999999987 9999999999997
No 48
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.47 E-value=2.5e-13 Score=118.60 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=80.1
Q ss_pred eeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhh
Q 024811 160 VALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~ 238 (262)
+|||+|||+|..+..+++.. ..+|+++|+|+.+++.|++++.... ...+++|+..|+.+.+.+ ++||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g-----l~~~i~~~~~d~~~~~~~-~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG-----LQGRIRIFYRDSAKDPFP-DTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-----CCcceEEEecccccCCCC-CCCCEeehHH
Confidence 69999999999999999544 2479999999999999999875421 234689999998665443 5899999999
Q ss_pred HHhhcCchhHHHHHHHHHhhccCC
Q 024811 239 CIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 239 vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++|+.+.+ .+|+++.++|+||
T Consensus 76 ~l~~~~~~~--~~l~~~~~~Lkpg 97 (224)
T smart00828 76 VIHHIKDKM--DLFSNISRHLKDG 97 (224)
T ss_pred HHHhCCCHH--HHHHHHHHHcCCC
Confidence 999999876 9999999999997
No 49
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.46 E-value=1.6e-13 Score=122.62 Aligned_cols=116 Identities=13% Similarity=0.212 Sum_probs=94.1
Q ss_pred HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcC-------CcEEEEeCCHHHHHHHHhhcccccccCCCCC
Q 024811 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (262)
Q Consensus 139 ~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~-------~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~ 211 (262)
.+..+.++...+ +...+.++||++||||.++..++.... .+|++.|+|++|+..++++.... .- ...
T Consensus 85 HRlWKd~~v~~L---~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-~l--~~~ 158 (296)
T KOG1540|consen 85 HRLWKDMFVSKL---GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-PL--KAS 158 (296)
T ss_pred hHHHHHHhhhcc---CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-CC--CcC
Confidence 344455555444 244578999999999999999994432 46999999999999999986431 11 122
Q ss_pred cceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 212 KATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 212 ~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+.++++|.+++++++.+||...+.+.+..+||++ +.|++++|+||||
T Consensus 159 ~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKpG 207 (296)
T KOG1540|consen 159 SRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKPG 207 (296)
T ss_pred CceEEEeCCcccCCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCCC
Confidence 358899999999999889999999999999999999 9999999999998
No 50
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.45 E-value=2.6e-13 Score=125.96 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=77.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|+++....... .....+++|...|++++ .++||+|+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la-~~g~~V~gvD~S~~ml~~A~~~~~~~~~~-~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLA-LEGAIVSASDISAAMVAEAERRAKEALAA-LPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcccc-cccccceEEEEcchhhc---CCCcCEEEE
Confidence 36799999999999999999 56778999999999999999987532100 00123678999998765 268999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhh
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVN 258 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~ 258 (262)
..+++|+++++...+++.+...
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~l 240 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLASL 240 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHhh
Confidence 9999999988777788887754
No 51
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.45 E-value=1.8e-13 Score=128.14 Aligned_cols=95 Identities=20% Similarity=0.145 Sum_probs=82.5
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..+++.. ..+|+++|+|+.|++.|+++... .+++++.+|+++++.++++||+|+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---------~~i~~i~gD~e~lp~~~~sFDvVI 183 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---------KECKIIEGDAEDLPFPTDYADRYV 183 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---------cCCeEEeccHHhCCCCCCceeEEE
Confidence 46799999999999999998443 35899999999999999997531 367899999998876567899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.+++|++|++ .+|+++.++|+||
T Consensus 184 s~~~L~~~~d~~--~~L~e~~rvLkPG 208 (340)
T PLN02490 184 SAGSIEYWPDPQ--RGIKEAYRVLKIG 208 (340)
T ss_pred EcChhhhCCCHH--HHHHHHHHhcCCC
Confidence 999999999988 8999999999997
No 52
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.44 E-value=4.7e-13 Score=113.23 Aligned_cols=115 Identities=18% Similarity=0.176 Sum_probs=86.1
Q ss_pred cchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCc--EEEEeCCHHHHHHHHhhcccccccCCCC
Q 024811 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDM 210 (262)
Q Consensus 133 ~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~--V~~VD~s~~mld~Ar~~l~~a~~~~~~~ 210 (262)
..++.+..+|...+... +..+|||+|||+|.++..++ +.++. |+++|.++.+++.+++++..- .
T Consensus 14 ~~~d~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la-~~~~~~~v~~vDi~~~a~~~a~~n~~~n------~ 79 (170)
T PF05175_consen 14 PRLDAGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALA-KRGPDAKVTAVDINPDALELAKRNAERN------G 79 (170)
T ss_dssp TSHHHHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHH-HTSTCEEEEEEESBHHHHHHHHHHHHHT------T
T ss_pred CCCCHHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHH-HhCCCCEEEEEcCCHHHHHHHHHHHHhc------C
Confidence 34445556666666532 46799999999999999999 55555 999999999999999998642 1
Q ss_pred CcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCc---hhHHHHHHHHHhhccCC
Q 024811 211 HKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 211 ~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD---~el~~~l~~~~~~LkPG 262 (262)
..++++++.|+.+..+ .++||+|+|+.+++.-.+ .-+.++++.+.+.|+||
T Consensus 80 ~~~v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~ 133 (170)
T PF05175_consen 80 LENVEVVQSDLFEALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPG 133 (170)
T ss_dssp CTTEEEEESSTTTTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEE
T ss_pred cccccccccccccccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCC
Confidence 2238999999987655 479999999998765554 12457999999999986
No 53
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.43 E-value=3.7e-13 Score=115.79 Aligned_cols=90 Identities=12% Similarity=0.019 Sum_probs=74.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCC-CC-CCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-PETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~-~~-~~~~~yDlI 234 (262)
++.+|||+|||+|.++..++......++++|+|+.|++.++++ +++++++|+.+ .. ..+++||+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------------~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------------GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------------CCeEEEEEhhhcccccCCCCcCEE
Confidence 4668999999999999999855556789999999999998752 35678888865 22 334689999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
+|+.++||++|++ .+++++.+.+++
T Consensus 80 i~~~~l~~~~d~~--~~l~e~~r~~~~ 104 (194)
T TIGR02081 80 ILSQTLQATRNPE--EILDEMLRVGRH 104 (194)
T ss_pred EEhhHhHcCcCHH--HHHHHHHHhCCe
Confidence 9999999999988 899999988875
No 54
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.43 E-value=8.8e-13 Score=116.40 Aligned_cols=105 Identities=10% Similarity=-0.043 Sum_probs=83.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccccccc------CCCCCcceEEEEcCCCCCCCCC-C
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------APDMHKATNFFCVPLQDFTPET-G 229 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~------~~~~~~~v~f~~~d~~~~~~~~-~ 229 (262)
++.+|||+|||.|+.+..|+ +.+.+|++||+|+.+++.+.+........ ......+++++++|+.++.+.. +
T Consensus 37 ~~~rvL~~gCG~G~da~~LA-~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLA-EQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CCCeEEEeCCCChHhHHHHH-hCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 46799999999999999999 77889999999999999874322110000 0011347899999999986542 5
Q ss_pred ccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.||+|+-.-+++|++.++...+++.+.++|+||
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg 148 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAG 148 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence 899999999999999888789999999999997
No 55
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.43 E-value=6.8e-13 Score=126.17 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=82.8
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
..++.+|||+|||+|.++..+++..+.+|+++|+|+.|++.|++++.. ..+++...|..++ +++||+|
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~---------l~v~~~~~D~~~l---~~~fD~I 232 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG---------LPVEIRLQDYRDL---NGQFDRI 232 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc---------CeEEEEECchhhc---CCCCCEE
Confidence 446789999999999999999955567899999999999999998742 2478888888766 2589999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|..+++|+.+.....+|+++.++|+||
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpG 260 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPD 260 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence 9999999998877779999999999997
No 56
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.42 E-value=4.2e-13 Score=121.51 Aligned_cols=106 Identities=15% Similarity=0.211 Sum_probs=81.7
Q ss_pred CCceeeEeeccccH----HHHHHHHhc------CCcEEEEeCCHHHHHHHHhhcccccc---c-----------------
Q 024811 157 QHLVALDCGSGIGR----ITKNLLIRY------FNEVDLLEPVSHFLDAARESLAPENH---M----------------- 206 (262)
Q Consensus 157 ~~~~VLDlGcGtG~----lt~~La~~~------~~~V~~VD~s~~mld~Ar~~l~~a~~---~----------------- 206 (262)
++.+|+|+|||||. ++..|++.. ..+|+++|+|+.||+.|++.+-.... .
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 566665321 13699999999999999986421000 0
Q ss_pred -CCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 207 -APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 207 -~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
......+++|.+.|+.+.+++.++||+|+|.++++|+++++..++++++.+.|+||
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pG 235 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPG 235 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCC
Confidence 00011368999999998766557999999999999999888889999999999997
No 57
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.41 E-value=1.7e-12 Score=112.15 Aligned_cols=93 Identities=18% Similarity=0.118 Sum_probs=77.0
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..++... ..+|+++|+|+.|++.|++++... ...+++|+++|++++.+ .++||+|+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~------~l~~i~~~~~d~~~~~~-~~~fDlV~ 117 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL------GLKNVTVVHGRAEEFGQ-EEKFDVVT 117 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc------CCCCEEEEeccHhhCCC-CCCccEEE
Confidence 47899999999999999998432 458999999999999999987653 22358999999999876 57999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+. +.+.+ .+++.+.+.|+||
T Consensus 118 ~~~----~~~~~--~~l~~~~~~LkpG 138 (187)
T PRK00107 118 SRA----VASLS--DLVELCLPLLKPG 138 (187)
T ss_pred Ecc----ccCHH--HHHHHHHHhcCCC
Confidence 975 33444 8999999999997
No 58
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.39 E-value=1.1e-12 Score=114.27 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=83.9
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++++... ....+++++..|+.+.....++||+|
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~D~I 125 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL-----GLSGNVEFVQGDAEALPFPDNSFDAV 125 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-----ccccCeEEEecccccCCCCCCCccEE
Confidence 46799999999999999999544 278999999999999999987532 11246889999998876555789999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++.+++|+.+.+ .+|+++.++|+||
T Consensus 126 ~~~~~l~~~~~~~--~~l~~~~~~L~~g 151 (239)
T PRK00216 126 TIAFGLRNVPDID--KALREMYRVLKPG 151 (239)
T ss_pred EEecccccCCCHH--HHHHHHHHhccCC
Confidence 9999999999877 9999999999996
No 59
>PRK06922 hypothetical protein; Provisional
Probab=99.38 E-value=1.4e-12 Score=130.17 Aligned_cols=99 Identities=12% Similarity=0.041 Sum_probs=80.9
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yDl 233 (262)
++.+|||+|||+|.++..|+... ..+|+++|+|+.|++.|+++.... ..+++++++|+.+++ +++++||+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-------g~~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-------GRSWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-------CCCeEEEEcchHhCccccCCCCEEE
Confidence 47899999999999999998432 348999999999999999876421 235788899988764 34578999
Q ss_pred hhhhhHHhhcC-----------chhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLT-----------DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hlt-----------D~el~~~l~~~~~~LkPG 262 (262)
|++++++||+. ++++.++|+++.++||||
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPG 530 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG 530 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCC
Confidence 99999999863 356779999999999997
No 60
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.37 E-value=1.2e-12 Score=112.29 Aligned_cols=92 Identities=20% Similarity=0.103 Sum_probs=73.7
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
+.+|||+|||+|.++..++... ..+|++||+|+.|++.+++++... ...+++++++|++++.+ .++||+|+|
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~------~~~~i~~i~~d~~~~~~-~~~fD~I~s 115 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL------GLNNVEIVNGRAEDFQH-EEQFDVITS 115 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh------CCCCeEEEecchhhccc-cCCccEEEe
Confidence 6799999999999999998332 247999999999999999887542 22468999999998754 369999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+. +++ .+ .+++.+.+.|+||
T Consensus 116 ~~-~~~---~~--~~~~~~~~~Lkpg 135 (181)
T TIGR00138 116 RA-LAS---LN--VLLELTLNLLKVG 135 (181)
T ss_pred hh-hhC---HH--HHHHHHHHhcCCC
Confidence 76 433 23 6788889999997
No 61
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.37 E-value=2.4e-12 Score=109.29 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=78.9
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++ ..+.+|+++|.|+.|++.+++++... ..++.++++|+.+..+ ++||+|++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~--~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLK-GKGKCILTTDINPFAVKELRENAKLN-------NVGLDVVMTDLFKGVR--GKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHHH-hcCCEEEEEECCHHHHHHHHHHHHHc-------CCceEEEEcccccccC--CcccEEEE
Confidence 35789999999999999999 55668999999999999999998532 2357889999877643 58999999
Q ss_pred hhHHhhcCchh-------------------HHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDD-------------------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~e-------------------l~~~l~~~~~~LkPG 262 (262)
+.++++.++.. +..+++++.++|+||
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g 133 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG 133 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC
Confidence 99888776421 346899999999996
No 62
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.35 E-value=2.3e-12 Score=111.17 Aligned_cols=96 Identities=15% Similarity=0.194 Sum_probs=82.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
++.+|||+|||+|.++..++..... +++++|+++.+++.++++.. ...+++++.+|+.+.....++||+|
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--------~~~~i~~~~~d~~~~~~~~~~~D~i 110 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--------LPLNIEFIQADAEALPFEDNSFDAV 110 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--------cCCCceEEecchhcCCCCCCcEEEE
Confidence 4679999999999999999955442 79999999999999999864 1236789999998876555689999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++++++|+++.+ .+++++.+.|+||
T Consensus 111 ~~~~~~~~~~~~~--~~l~~~~~~L~~g 136 (223)
T TIGR01934 111 TIAFGLRNVTDIQ--KALREMYRVLKPG 136 (223)
T ss_pred EEeeeeCCcccHH--HHHHHHHHHcCCC
Confidence 9999999999877 9999999999997
No 63
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.35 E-value=3.8e-12 Score=111.90 Aligned_cols=96 Identities=17% Similarity=0.237 Sum_probs=80.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..++ +...+|+++|+++.+++.|++++... ...++++..++.++.. ..++||+|+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~-~~~~~v~~iD~s~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~fD~Ii 119 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMA-RLGADVTGIDASEENIEVARLHALES-------GLKIDYRQTTAEELAAEHPGQFDVVT 119 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHH-HcCCeEEEEcCCHHHHHHHHHHHHHc-------CCceEEEecCHHHhhhhcCCCccEEE
Confidence 46789999999999999998 55678999999999999999886432 1256788888877641 236899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.+++|+.+.+ .+|+.+.+.|+||
T Consensus 120 ~~~~l~~~~~~~--~~l~~~~~~L~~g 144 (233)
T PRK05134 120 CMEMLEHVPDPA--SFVRACAKLVKPG 144 (233)
T ss_pred EhhHhhccCCHH--HHHHHHHHHcCCC
Confidence 999999999987 8999999999996
No 64
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.33 E-value=4.2e-12 Score=110.60 Aligned_cols=97 Identities=18% Similarity=0.280 Sum_probs=82.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-CCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~yDlI~ 235 (262)
.+.+|||+|||+|.++..++ +...+|+++|+|+.+++.+++++... ...++++...|+.++... +++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~-~~~~~v~~iD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLA-RLGANVTGIDASEENIEVAKLHAKKD------PLLKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHc------CCCceEEEeCCHHHhhcCCCCCccEEE
Confidence 36799999999999999998 55667999999999999999987532 112578889998877543 36899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.+++|+.+++ .+++++.++|+||
T Consensus 118 ~~~~l~~~~~~~--~~l~~~~~~L~~g 142 (224)
T TIGR01983 118 CMEVLEHVPDPQ--AFIRACAQLLKPG 142 (224)
T ss_pred ehhHHHhCCCHH--HHHHHHHHhcCCC
Confidence 999999999988 9999999999986
No 65
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.31 E-value=1.9e-12 Score=112.57 Aligned_cols=100 Identities=12% Similarity=0.026 Sum_probs=76.9
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCC-CCCC--CCCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFT--PETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~-~~~~--~~~~~yD 232 (262)
+..+|||+|||+|.++..|+... ..+|++||+|+.|++.|++++... ...++.|+++|+ +.+. ..+++||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE------GLTNLRLLCGDAVEVLLDMFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc------CCCCEEEEecCHHHHHHHHcCccccc
Confidence 36789999999999999998442 347999999999999999987542 224789999999 6554 3346899
Q ss_pred hhhhhhHHhhcC------chhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLT------DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hlt------D~el~~~l~~~~~~LkPG 262 (262)
+|+++++..+.. ......+++++.++|+||
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg 149 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG 149 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCC
Confidence 999987543222 212347999999999996
No 66
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.31 E-value=6.9e-12 Score=98.41 Aligned_cols=95 Identities=13% Similarity=-0.028 Sum_probs=73.8
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI 234 (262)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++++... ...++.++..|+.+.. ....+||+|
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~D~v 92 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF------GVSNIVIVEGDAPEALEDSLPEPDRV 92 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh------CCCceEEEeccccccChhhcCCCCEE
Confidence 45699999999999999999443 247999999999999999987542 1236788888877532 223589999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+..+.++ ..++++.+.+.|+||
T Consensus 93 ~~~~~~~~-----~~~~l~~~~~~Lk~g 115 (124)
T TIGR02469 93 FIGGSGGL-----LQEILEAIWRRLRPG 115 (124)
T ss_pred EECCcchh-----HHHHHHHHHHHcCCC
Confidence 99765433 338999999999997
No 67
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.29 E-value=9.7e-12 Score=114.47 Aligned_cols=101 Identities=18% Similarity=0.177 Sum_probs=78.0
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC-CCCCC----
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETG---- 229 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~-~~~~~---- 229 (262)
++.+|||+|||+|+.|..|+... ..+|+++|+|++|++.|++++.... ...++.++++|+.+. .....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-----p~~~v~~i~gD~~~~~~~~~~~~~~ 137 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-----PQLEVHGICADFTQPLALPPEPAAG 137 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-----CCceEEEEEEcccchhhhhcccccC
Confidence 45789999999999999999443 4689999999999999999875321 112467789999874 22211
Q ss_pred ccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
...++++..+++|+++++...+|++++++|+||
T Consensus 138 ~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pg 170 (301)
T TIGR03438 138 RRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPG 170 (301)
T ss_pred CeEEEEecccccCCCHHHHHHHHHHHHHhcCCC
Confidence 233455556899999989889999999999997
No 68
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.28 E-value=1.3e-11 Score=113.46 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=81.2
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.+..+|||||||+|.++..++ +.++ +++++|. +.+++.+++++.... ...+++++.+|+.+.+++ .+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~-~~~p~~~~~~~D~-~~~~~~a~~~~~~~g-----l~~rv~~~~~d~~~~~~~--~~D~ 218 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAML-KHFPELDSTILNL-PGAIDLVNENAAEKG-----VADRMRGIAVDIYKESYP--EADA 218 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHH-HHCCCCEEEEEec-HHHHHHHHHHHHhCC-----ccceEEEEecCccCCCCC--CCCE
Confidence 456799999999999999999 4443 6889997 799999999876431 234689999999865443 4799
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+++.++|+.++++...+|+++.++|+||
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pg 247 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSG 247 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCC
Confidence 99999999999887789999999999997
No 69
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.26 E-value=1.5e-11 Score=107.13 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=74.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|.++..|+... ..+|+++|.++.|++.|++++.... ...+++++.+|..+..+...+||+
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~-----~~~~v~~~~~d~~~~~~~~~~fD~ 145 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG-----YWGVVEVYHGDGKRGLEKHAPFDA 145 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCcEEEEECCcccCCccCCCccE
Confidence 356899999999999999998433 2589999999999999999886421 123588999999875444468999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++..+++|+++ ++.+.|+||
T Consensus 146 Ii~~~~~~~~~~--------~l~~~L~~g 166 (205)
T PRK13944 146 IIVTAAASTIPS--------ALVRQLKDG 166 (205)
T ss_pred EEEccCcchhhH--------HHHHhcCcC
Confidence 999988887763 466778886
No 70
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.26 E-value=3.8e-12 Score=110.84 Aligned_cols=97 Identities=18% Similarity=0.203 Sum_probs=81.0
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceE-EEEcCCCCCC-CCCCccchhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN-FFCVPLQDFT-PETGRYDVIW 235 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~-f~~~d~~~~~-~~~~~yDlI~ 235 (262)
...|||+|||||..-+..--....+|+++||++.|-+.|.+.+++.+ ..++. |+.++.++++ .++++||+|+
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k------~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK------PLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc------CcceEEEEeechhcCcccccCCeeeEE
Confidence 34689999999997665543346789999999999999999887653 23444 8999999986 3568999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++|.-..|+. +.|++++++|+||
T Consensus 151 ~TlvLCSve~~~--k~L~e~~rlLRpg 175 (252)
T KOG4300|consen 151 CTLVLCSVEDPV--KQLNEVRRLLRPG 175 (252)
T ss_pred EEEEEeccCCHH--HHHHHHHHhcCCC
Confidence 999999999988 9999999999997
No 71
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.25 E-value=1.6e-11 Score=111.07 Aligned_cols=86 Identities=14% Similarity=0.040 Sum_probs=69.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcC----CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~----~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
...+|||+|||+|.++..|+.... ..|+++|+|+.|++.|+++. +++.|..+|+.++++.+++||
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSHRLPFADQSLD 153 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeecccCCCcCCcee
Confidence 356899999999999999984321 26899999999999998764 257899999998877667999
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++.++ + ..++++.++|+||
T Consensus 154 ~I~~~~~------~---~~~~e~~rvLkpg 174 (272)
T PRK11088 154 AIIRIYA------P---CKAEELARVVKPG 174 (272)
T ss_pred EEEEecC------C---CCHHHHHhhccCC
Confidence 9998653 1 3457789999997
No 72
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.24 E-value=1.8e-11 Score=107.04 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=72.9
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCc---EEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCcc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNE---VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~---V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~y 231 (262)
..++.+|||+|||+|.++..|+ +.+.. |+++|.++.+++.|++++... ...++.++++|..+..+...+|
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la-~~~~~~g~V~~vD~~~~~~~~A~~~~~~~------g~~~v~~~~~d~~~~~~~~~~f 147 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLA-EIVGRDGLVVSIERIPELAEKAERRLRKL------GLDNVIVIVGDGTQGWEPLAPY 147 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHH-HHhCCCCEEEEEeCCHHHHHHHHHHHHHC------CCCCeEEEECCcccCCcccCCC
Confidence 3467899999999999999999 44443 999999999999999998643 2347899999998764444689
Q ss_pred chhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 232 DVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|++..+..+++ ..+.+.|+||
T Consensus 148 D~Ii~~~~~~~~~--------~~~~~~L~~g 170 (215)
T TIGR00080 148 DRIYVTAAGPKIP--------EALIDQLKEG 170 (215)
T ss_pred CEEEEcCCccccc--------HHHHHhcCcC
Confidence 9999887665554 3456778886
No 73
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.23 E-value=1.9e-11 Score=107.07 Aligned_cols=94 Identities=15% Similarity=0.077 Sum_probs=73.5
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
..++.+|||+|||+|.++..|+.... .+|+++|+++.|++.|++++... ...+++++++|..+..++.++||
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~------g~~~v~~~~gd~~~~~~~~~~fD 147 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL------GYDNVEVIVGDGTLGYEENAPYD 147 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCeEEEECCcccCCCcCCCcC
Confidence 34678999999999999999884332 48999999999999999998643 23478999999877555457899
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+|++..++.+++ ..+.+.|+||
T Consensus 148 ~I~~~~~~~~~~--------~~l~~~Lkpg 169 (212)
T PRK13942 148 RIYVTAAGPDIP--------KPLIEQLKDG 169 (212)
T ss_pred EEEECCCcccch--------HHHHHhhCCC
Confidence 999987665543 2455678886
No 74
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.22 E-value=4.5e-11 Score=102.13 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=72.6
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..+++.. ..+|+++|+|+.|++.|++++... ...+++++++|.... . .++||+|+
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~------~~~~i~~~~~d~~~~-~-~~~~D~v~ 102 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF------GCGNIDIIPGEAPIE-L-PGKADAIF 102 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh------CCCCeEEEecCchhh-c-CcCCCEEE
Confidence 57799999999999999999443 247999999999999999987532 123688888887532 2 25899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+..+.+++ ..+++.+.+.|+||
T Consensus 103 ~~~~~~~~-----~~~l~~~~~~Lk~g 124 (187)
T PRK08287 103 IGGSGGNL-----TAIIDWSLAHLHPG 124 (187)
T ss_pred ECCCccCH-----HHHHHHHHHhcCCC
Confidence 87654432 36889999999997
No 75
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.22 E-value=1e-10 Score=103.92 Aligned_cols=105 Identities=11% Similarity=-0.059 Sum_probs=84.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccc------cccCCCCCcceEEEEcCCCCCCCC---
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE------NHMAPDMHKATNFFCVPLQDFTPE--- 227 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a------~~~~~~~~~~v~f~~~d~~~~~~~--- 227 (262)
++.+||+.|||.|+-...|+ ..+.+|++||+|+.+++.+.+..... ..........++++++|+.++++.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA-~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFL-SKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CCCeEEEeCCCChHHHHHHH-hCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 46799999999999999999 66778999999999999986632110 000001234789999999999642
Q ss_pred CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 228 ~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.++||+|+-..+|++++.+...++.+.+.++|+||
T Consensus 122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pg 156 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNN 156 (226)
T ss_pred cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCC
Confidence 25899999999999998887778999999999996
No 76
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.21 E-value=8.2e-12 Score=97.80 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=76.7
Q ss_pred CceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccchh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVI 234 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yDlI 234 (262)
+.+|||+|||+|.++..++ +.+ .+++++|+++..++.|+.++.... ...+++++++|+.++. ...++||+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~-~~~~~~~~gvdi~~~~~~~a~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~D~I 74 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAAL-RRGAARVTGVDIDPEAVELARRNLPRNG-----LDDRVEVIVGDARDLPEPLPDGKFDLI 74 (117)
T ss_dssp TEEEEEETSTTCHHHHHHH-HHCTCEEEEEESSHHHHHHHHHHCHHCT-----TTTTEEEEESHHHHHHHTCTTT-EEEE
T ss_pred CCEEEEcCcchHHHHHHHH-HHCCCeEEEEEECHHHHHHHHHHHHHcc-----CCceEEEEECchhhchhhccCceeEEE
Confidence 3589999999999999999 555 899999999999999999987531 2246899999998875 345799999
Q ss_pred hhhhHHhhcC-c-----hhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLT-D-----DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hlt-D-----~el~~~l~~~~~~LkPG 262 (262)
+++.+++... + .....|++++.+.|+||
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g 108 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPG 108 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHHEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHHcCCC
Confidence 9998765331 1 12357999999999986
No 77
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.20 E-value=1.5e-11 Score=106.06 Aligned_cols=99 Identities=13% Similarity=0.098 Sum_probs=76.0
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC---CCCCccch
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDV 233 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~---~~~~~yDl 233 (262)
..+|||+|||+|.++..++.+. ..+|++||+|+.|++.|++++... ...+++++++|+.++. .+.+.+|.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~------~l~ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL------GLKNLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh------CCCCEEEEccCHHHHHHhhCCCCceeE
Confidence 4589999999999999999443 237999999999999999987542 2347999999997642 22358999
Q ss_pred hhhhhHHhhcCch------hHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDD------DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~------el~~~l~~~~~~LkPG 262 (262)
|+++++..|.... ....+++.+.++|+||
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg 125 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKG 125 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCC
Confidence 9998765443221 1136999999999997
No 78
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.20 E-value=4.8e-11 Score=103.13 Aligned_cols=89 Identities=12% Similarity=0.021 Sum_probs=75.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC--CCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~--~~~~~~yDlI 234 (262)
++.+|||+|||.|.+...|......++.+||.+++.+..+-++ .++.+++|+++- .+++++||.|
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------------Gv~Viq~Dld~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------------GVSVIQGDLDEGLADFPDQSFDYV 79 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------------CCCEEECCHHHhHhhCCCCCccEE
Confidence 5889999999999999999966777889999999998888775 467888888663 2345899999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhcc
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHS 260 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~Lk 260 (262)
|++.+|.++.+++ .+|+++.|+-+
T Consensus 80 IlsqtLQ~~~~P~--~vL~EmlRVgr 103 (193)
T PF07021_consen 80 ILSQTLQAVRRPD--EVLEEMLRVGR 103 (193)
T ss_pred ehHhHHHhHhHHH--HHHHHHHHhcC
Confidence 9999999999999 88988887644
No 79
>PRK14967 putative methyltransferase; Provisional
Probab=99.19 E-value=7.4e-11 Score=103.76 Aligned_cols=99 Identities=10% Similarity=-0.059 Sum_probs=75.3
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.++..++.....+|+++|.|+.|++.+++++... ..++.++++|+.+..+ .++||+|+
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~-------~~~~~~~~~d~~~~~~-~~~fD~Vi 106 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA-------GVDVDVRRGDWARAVE-FRPFDVVV 106 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh-------CCeeEEEECchhhhcc-CCCeeEEE
Confidence 356799999999999999999443348999999999999999987532 1257888999877543 36899999
Q ss_pred hhhHHhhcCc-------------------hhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTD-------------------DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD-------------------~el~~~l~~~~~~LkPG 262 (262)
++....+-++ ..+..+++++.++|+||
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g 152 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG 152 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC
Confidence 9865332211 11346889999999997
No 80
>PLN03075 nicotianamine synthase; Provisional
Probab=99.19 E-value=6.7e-11 Score=108.77 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=80.7
Q ss_pred CCceeeEeeccccHHHHHHHH-hcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLI-RYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~-~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.+.+|+|||||+|.+|..++. ..++ +++++|.++.+++.|++.+... ....++++|..+|+.+..+..+.||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~----~gL~~rV~F~~~Da~~~~~~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD----PDLSKRMFFHTADVMDVTESLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc----cCccCCcEEEECchhhcccccCCcCE
Confidence 467999999998877655552 3454 5999999999999999988431 11235799999999887443468999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++. +++|+..++..++|+++.+.|+||
T Consensus 199 VF~~-ALi~~dk~~k~~vL~~l~~~LkPG 226 (296)
T PLN03075 199 VFLA-ALVGMDKEEKVKVIEHLGKHMAPG 226 (296)
T ss_pred EEEe-cccccccccHHHHHHHHHHhcCCC
Confidence 9999 999997666669999999999997
No 81
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.15 E-value=1.2e-10 Score=101.37 Aligned_cols=92 Identities=14% Similarity=0.033 Sum_probs=72.3
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.++..|+ ..+.+|+++|.++.+++.|++++... ...++++..+|..+..+..++||+|+
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la-~~~~~v~~vd~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~fD~I~ 149 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLA-HLVRRVFSVERIKTLQWEAKRRLKQL------GLHNVSVRHGDGWKGWPAYAPFDRIL 149 (212)
T ss_pred CCCCEEEEECCCccHHHHHHH-HHhCEEEEEeCCHHHHHHHHHHHHHC------CCCceEEEECCcccCCCcCCCcCEEE
Confidence 457899999999999999887 55678999999999999999988643 23468999999865433346899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+..++++++ ..+.+.|+||
T Consensus 150 ~~~~~~~~~--------~~l~~~L~~g 168 (212)
T PRK00312 150 VTAAAPEIP--------RALLEQLKEG 168 (212)
T ss_pred EccCchhhh--------HHHHHhcCCC
Confidence 987766653 3456788886
No 82
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.13 E-value=1.1e-10 Score=86.09 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=76.5
Q ss_pred eeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchhhhhh
Q 024811 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIWVQW 238 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI~s~~ 238 (262)
+++|+|||+|.++..++.....++.++|+++.+++.+++.... ....+++++..|+.++.. ..++||+|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA------LLADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc------ccccceEEEEcChhhhccccCCceEEEEEcc
Confidence 4899999999999999953567899999999999999853221 123578999999988764 346899999999
Q ss_pred HHhhcCchhHHHHHHHHHhhccCC
Q 024811 239 CIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 239 vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++++ ......+++.+.+.|+||
T Consensus 75 ~~~~~-~~~~~~~l~~~~~~l~~~ 97 (107)
T cd02440 75 PLHHL-VEDLARFLEEARRLLKPG 97 (107)
T ss_pred ceeeh-hhHHHHHHHHHHHHcCCC
Confidence 98884 333448999999999986
No 83
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.12 E-value=2.9e-10 Score=104.03 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=71.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..+++....+|.++|+|+.|++.|++++.... ....+.+...+..... .++||+|++
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~-----~~~~~~~~~~~~~~~~--~~~fDlVva 231 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQ-----VSDRLQVKLIYLEQPI--EGKADVIVA 231 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-----CCcceEEEeccccccc--CCCceEEEE
Confidence 467999999999999999884434589999999999999999875321 1224556666543332 368999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+...++ +..++.++.+.|+||
T Consensus 232 n~~~~~-----l~~ll~~~~~~Lkpg 252 (288)
T TIGR00406 232 NILAEV-----IKELYPQFSRLVKPG 252 (288)
T ss_pred ecCHHH-----HHHHHHHHHHHcCCC
Confidence 865433 347899999999997
No 84
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.10 E-value=2.6e-10 Score=98.51 Aligned_cols=98 Identities=10% Similarity=0.097 Sum_probs=75.4
Q ss_pred CCCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-CCcc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRY 231 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~y 231 (262)
..++.+|||+|||+|.++..++... ..+|+++|.++.|++.|++++.... ...++.++++|+.++.+. .+.|
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g-----~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG-----VLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC-----CCCCeEEEEechhhhHhhcCCCC
Confidence 4467899999999999999988443 3579999999999999999875421 124688899998775322 2589
Q ss_pred chhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 232 DVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|++.. ...++..+++.+.+.|+||
T Consensus 113 D~V~~~~-----~~~~~~~~l~~~~~~Lkpg 138 (198)
T PRK00377 113 DRIFIGG-----GSEKLKEIISASWEIIKKG 138 (198)
T ss_pred CEEEECC-----CcccHHHHHHHHHHHcCCC
Confidence 9999854 2234458999999999996
No 85
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.10 E-value=2.1e-10 Score=96.71 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=69.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++ +...+|+++|.++.|++.+++++.. ..+++++.+|+.++.++...||.|++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~-~~~~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~~~~~~~~~~d~vi~ 83 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELL-ERAARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDALKFDLPKLQPYKVVG 83 (169)
T ss_pred CcCEEEEECCCccHHHHHHH-hcCCeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchhcCCccccCCCEEEE
Confidence 46789999999999999999 4578899999999999999998742 24789999999998765456999999
Q ss_pred hhHHhhcCchhHHHHHH
Q 024811 237 QWCIGHLTDDDFVSFFK 253 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~ 253 (262)
+..+ |++.+.+..+++
T Consensus 84 n~Py-~~~~~~i~~~l~ 99 (169)
T smart00650 84 NLPY-NISTPILFKLLE 99 (169)
T ss_pred CCCc-ccHHHHHHHHHh
Confidence 8765 455444444544
No 86
>PHA03411 putative methyltransferase; Provisional
Probab=99.08 E-value=2.4e-10 Score=104.13 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=65.4
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
..+|||+|||+|.++..++.+. ..+|+++|.|+.|++.|++++. ++.++++|+.++... .+||+|++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------~v~~v~~D~~e~~~~-~kFDlIIs 132 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------EAEWITSDVFEFESN-EKFDVVIS 132 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------CCEEEECchhhhccc-CCCcEEEE
Confidence 5689999999999999998443 4589999999999999998742 578999999988644 68999999
Q ss_pred hhHHhhcCch
Q 024811 237 QWCIGHLTDD 246 (262)
Q Consensus 237 ~~vl~hltD~ 246 (262)
+.+++|++..
T Consensus 133 NPPF~~l~~~ 142 (279)
T PHA03411 133 NPPFGKINTT 142 (279)
T ss_pred cCCccccCch
Confidence 9999997654
No 87
>PRK00811 spermidine synthase; Provisional
Probab=99.08 E-value=2.7e-10 Score=104.14 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=77.6
Q ss_pred CCceeeEeeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~-~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI 234 (262)
.+.+||+||||+|.++..+++. ...+|++||+++.+++.|++.+...... .-..++++++.+|..++.. ..++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGG-AYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccc-cccCCceEEEECchHHHHhhCCCcccEE
Confidence 4679999999999999999944 2468999999999999999987532110 0024578999999877632 23689999
Q ss_pred hhhhHHhhcCchhH--HHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDF--VSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el--~~~l~~~~~~LkPG 262 (262)
++..+-.+.+...+ .+|++.|++.|+||
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~g 184 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKED 184 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 98653332222222 47999999999997
No 88
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.07 E-value=2.2e-10 Score=102.86 Aligned_cols=101 Identities=16% Similarity=0.134 Sum_probs=82.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC--CCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~--~~~yDl 233 (262)
...+|||+|||+|.++..|+++.- .++++||..+.|.+.|+++++.. ....++++++.|+.++... ..+||+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln-----~l~~ri~v~~~Di~~~~~~~~~~~fD~ 118 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN-----PLEERIQVIEADIKEFLKALVFASFDL 118 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC-----cchhceeEehhhHHHhhhcccccccCE
Confidence 478999999999999999995533 58999999999999999998752 2346899999999998542 246999
Q ss_pred hhhhhHH----------------hhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCI----------------GHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl----------------~hltD~el~~~l~~~~~~LkPG 262 (262)
|+||.++ +|...-.+.++++.++..||||
T Consensus 119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~ 163 (248)
T COG4123 119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPG 163 (248)
T ss_pred EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCC
Confidence 9999752 4444445778999999999986
No 89
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.07 E-value=7.5e-10 Score=99.41 Aligned_cols=99 Identities=22% Similarity=0.215 Sum_probs=74.1
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++.. ....++.++.+|+.+..+ .++||+|+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~------~~~~~i~~~~~d~~~~~~-~~~fD~Iv 180 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH------GLGARVEFLQGDWFEPLP-GGRFDLIV 180 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh------CCCCcEEEEEccccCcCC-CCceeEEE
Confidence 46789999999999999999443 36799999999999999999751 123478999999865433 36899999
Q ss_pred hhhHH------hhcCc------------------hhHHHHHHHHHhhccCC
Q 024811 236 VQWCI------GHLTD------------------DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl------~hltD------------------~el~~~l~~~~~~LkPG 262 (262)
++.+. +.+.+ .....+++++.+.|+||
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~g 231 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPG 231 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccC
Confidence 97532 11111 11246889999999996
No 90
>PRK04266 fibrillarin; Provisional
Probab=99.06 E-value=6.1e-10 Score=98.89 Aligned_cols=94 Identities=12% Similarity=0.020 Sum_probs=70.8
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC---CCCC
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG 229 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~---~~~~ 229 (262)
..++.+|||+|||+|.++..|+ +.. ..|.++|.++.|++.+.+++.. ..++.++.+|+.+.. +-.+
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la-~~v~~g~V~avD~~~~ml~~l~~~a~~--------~~nv~~i~~D~~~~~~~~~l~~ 140 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVS-DIVEEGVVYAVEFAPRPMRELLEVAEE--------RKNIIPILADARKPERYAHVVE 140 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHH-HhcCCCeEEEEECCHHHHHHHHHHhhh--------cCCcEEEECCCCCcchhhhccc
Confidence 4567899999999999999999 543 4799999999999988776532 146888888986521 1124
Q ss_pred ccchhhhhhHHhhcCchhH-HHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDDF-VSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el-~~~l~~~~~~LkPG 262 (262)
+||+|++ ++++++. ..+++++.+.||||
T Consensus 141 ~~D~i~~-----d~~~p~~~~~~L~~~~r~LKpG 169 (226)
T PRK04266 141 KVDVIYQ-----DVAQPNQAEIAIDNAEFFLKDG 169 (226)
T ss_pred cCCEEEE-----CCCChhHHHHHHHHHHHhcCCC
Confidence 6999984 3445432 35789999999997
No 91
>PHA03412 putative methyltransferase; Provisional
Probab=99.06 E-value=3.6e-10 Score=100.88 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=73.9
Q ss_pred CceeeEeeccccHHHHHHHHhc----CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 158 HLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~----~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
+.+|||+|||+|.++..++... ..+|++||+++.+++.|++++. ++.++++|+..+.+. ++||+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----------~~~~~~~D~~~~~~~-~~FDl 117 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----------EATWINADALTTEFD-TLFDM 117 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----------CCEEEEcchhccccc-CCccE
Confidence 5799999999999999998432 2479999999999999998753 468999999877653 68999
Q ss_pred hhhhhHHhhcCch---------h-HHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDD---------D-FVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~---------e-l~~~l~~~~~~LkPG 262 (262)
||||.+++-+... . ...++.++.++++||
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G 156 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQG 156 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCC
Confidence 9999876533211 2 335899999988887
No 92
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.06 E-value=1.2e-09 Score=96.36 Aligned_cols=98 Identities=20% Similarity=0.167 Sum_probs=74.4
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
+.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++... ...++.++++|+.+..+ .++||+|++
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~~-~~~fD~Vi~ 160 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL------GLDNVTFLQSDWFEPLP-GGKFDLIVS 160 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc------CCCeEEEEECchhccCc-CCceeEEEE
Confidence 4589999999999999999443 348999999999999999987542 22368999999977433 468999999
Q ss_pred hhHH------hhcCch------------------hHHHHHHHHHhhccCC
Q 024811 237 QWCI------GHLTDD------------------DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl------~hltD~------------------el~~~l~~~~~~LkPG 262 (262)
+.++ +++... ....+++++.+.|+||
T Consensus 161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~g 210 (251)
T TIGR03534 161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPG 210 (251)
T ss_pred CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccC
Confidence 7542 222211 1236899999999996
No 93
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.05 E-value=4.9e-10 Score=99.68 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=74.3
Q ss_pred ceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhh
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~ 238 (262)
..++|+|||+|.-++.++ .++++|.++|+|+.||+.|++.-..-. .....++...++.++.-.+++.|+|+|..
T Consensus 35 ~~a~DvG~G~Gqa~~~ia-e~~k~VIatD~s~~mL~~a~k~~~~~y-----~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIA-EHYKEVIATDVSEAMLKVAKKHPPVTY-----CHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHH-HhhhhheeecCCHHHHHHhhcCCCccc-----ccCCccccccccccccCCCcceeeehhhh
Confidence 389999999997777777 889999999999999999998754311 11233455556666654458999999999
Q ss_pred HHhhcCchhHHHHHHHHHhhccC
Q 024811 239 CIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 239 vl~hltD~el~~~l~~~~~~LkP 261 (262)
++|++..+ +|++.++++|++
T Consensus 109 a~HWFdle---~fy~~~~rvLRk 128 (261)
T KOG3010|consen 109 AVHWFDLE---RFYKEAYRVLRK 128 (261)
T ss_pred hHHhhchH---HHHHHHHHHcCC
Confidence 99999855 699999999997
No 94
>PRK14968 putative methyltransferase; Provisional
Probab=99.05 E-value=4.1e-10 Score=94.96 Aligned_cols=100 Identities=12% Similarity=0.023 Sum_probs=74.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..++. ...+|+++|.|+.|++.+++++..... ....+.++..|+.+..+. .+||+|++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~~d~~~~~~~-~~~d~vi~ 96 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAK-NGKKVVGVDINPYAVECAKCNAKLNNI----RNNGVEVIRSDLFEPFRG-DKFDVILF 96 (188)
T ss_pred CCCEEEEEccccCHHHHHHHh-hcceEEEEECCHHHHHHHHHHHHHcCC----CCcceEEEeccccccccc-cCceEEEE
Confidence 467899999999999999994 478999999999999999998753211 111278888888765443 48999998
Q ss_pred hhHHhhcC-------------------chhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLT-------------------DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hlt-------------------D~el~~~l~~~~~~LkPG 262 (262)
+..+.+-. ...+..+++++.++|+||
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g 141 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG 141 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC
Confidence 75433211 112346899999999996
No 95
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.05 E-value=5.6e-10 Score=102.15 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=73.7
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
+.+|||+|||+|.++..++... ..+|+++|.|+.+++.|++++.... ...+++|+++|+.+..+ .++||+|+|
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~-----~~~~i~~~~~D~~~~~~-~~~fD~Iv~ 195 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG-----LEDRVTLIQSDLFAALP-GRKYDLIVS 195 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEECchhhccC-CCCccEEEE
Confidence 4689999999999999999443 2489999999999999999975421 12368999999865433 358999999
Q ss_pred hhH------HhhcCc-----h------------hHHHHHHHHHhhccCC
Q 024811 237 QWC------IGHLTD-----D------------DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~v------l~hltD-----~------------el~~~l~~~~~~LkPG 262 (262)
+.+ +.++.. + ....+++.+.+.|+||
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~g 244 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNEN 244 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 843 112211 1 1246899999999996
No 96
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.04 E-value=7.4e-11 Score=104.35 Aligned_cols=104 Identities=16% Similarity=0.146 Sum_probs=81.1
Q ss_pred HHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcC
Q 024811 141 FLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220 (262)
Q Consensus 141 fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d 220 (262)
+|..+|.. + ...+..++||+|||||-.+..|- ....+.++||+|+.|+++|.++=-. -.++..+
T Consensus 113 ~l~emI~~-~---~~g~F~~~lDLGCGTGL~G~~lR-~~a~~ltGvDiS~nMl~kA~eKg~Y-----------D~L~~Ae 176 (287)
T COG4976 113 LLAEMIGK-A---DLGPFRRMLDLGCGTGLTGEALR-DMADRLTGVDISENMLAKAHEKGLY-----------DTLYVAE 176 (287)
T ss_pred HHHHHHHh-c---cCCccceeeecccCcCcccHhHH-HHHhhccCCchhHHHHHHHHhccch-----------HHHHHHH
Confidence 46666542 1 23347899999999999999998 7888999999999999999986311 1234455
Q ss_pred CCCCC--CCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 221 LQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 221 ~~~~~--~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+..|. ....+||+|++.-|+.|+-+-+ .+|.-....|+||
T Consensus 177 a~~Fl~~~~~er~DLi~AaDVl~YlG~Le--~~~~~aa~~L~~g 218 (287)
T COG4976 177 AVLFLEDLTQERFDLIVAADVLPYLGALE--GLFAGAAGLLAPG 218 (287)
T ss_pred HHHHhhhccCCcccchhhhhHHHhhcchh--hHHHHHHHhcCCC
Confidence 55443 2346999999999999999977 9999999999997
No 97
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.03 E-value=5.1e-10 Score=104.17 Aligned_cols=100 Identities=12% Similarity=-0.119 Sum_probs=79.2
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||.|||+|.++..++ ..+.+|.++|.++.|+..|+.++... ...++.++++|+.+++...++||+|+
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa-~~~~~v~g~Di~~~~~~~a~~nl~~~------g~~~i~~~~~D~~~l~~~~~~~D~Iv 253 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAG-LMGAKVIGCDIDWKMVAGARINLEHY------GIEDFFVKRGDATKLPLSSESVDAIA 253 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHH-HhCCeEEEEcCCHHHHHHHHHHHHHh------CCCCCeEEecchhcCCcccCCCCEEE
Confidence 457799999999999999887 56788999999999999999998643 12347889999998866557899999
Q ss_pred hhhHHhhcC------c-hhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLT------D-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hlt------D-~el~~~l~~~~~~LkPG 262 (262)
++.+.+.-. . .-...+++.+.+.|+||
T Consensus 254 ~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~g 287 (329)
T TIGR01177 254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSE 287 (329)
T ss_pred ECCCCcCcccccCCchHHHHHHHHHHHHHHccCC
Confidence 986543211 1 22357999999999997
No 98
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.03 E-value=5e-10 Score=98.12 Aligned_cols=90 Identities=8% Similarity=0.018 Sum_probs=68.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--------
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-------- 225 (262)
.++.+|||+|||||.++..+++... ..|++||+++ | .. ..++.++++|+.+..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-------~~---------~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-------DP---------IVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-------cC---------CCCcEEEecCCCChHHHHHHHHH
Confidence 3577999999999999999995543 4799999988 2 11 135789999998852
Q ss_pred CCCCccchhhhhhHHhhcCchh---------HHHHHHHHHhhccCC
Q 024811 226 PETGRYDVIWVQWCIGHLTDDD---------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 226 ~~~~~yDlI~s~~vl~hltD~e---------l~~~l~~~~~~LkPG 262 (262)
...++||+|+|+.+.++..++. +..+|+.+.++|+||
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG 158 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG 158 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 2346899999987665554321 236899999999997
No 99
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.00 E-value=1.4e-09 Score=104.19 Aligned_cols=76 Identities=20% Similarity=0.195 Sum_probs=60.8
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yDlI 234 (262)
++.+|||+|||+|.++..++... ..+|+++|.|+.|++.|++++... ..+++|+++|+.+.. +..++||+|
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~-------g~rV~fi~gDl~e~~l~~~~~FDLI 323 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL-------GARVEFAHGSWFDTDMPSEGKWDII 323 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------CCcEEEEEcchhccccccCCCccEE
Confidence 35689999999999999998443 457999999999999999997532 236899999996542 223589999
Q ss_pred hhhhH
Q 024811 235 WVQWC 239 (262)
Q Consensus 235 ~s~~v 239 (262)
+||.+
T Consensus 324 VSNPP 328 (423)
T PRK14966 324 VSNPP 328 (423)
T ss_pred EECCC
Confidence 99875
No 100
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.00 E-value=8.4e-10 Score=101.45 Aligned_cols=98 Identities=15% Similarity=0.090 Sum_probs=76.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
.+.+|||||||.|..+-.++.+....|.+|||++.+.-..+---.... ....+.+....+++++. .+.||+|+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg-----~~~~~~~lplgvE~Lp~-~~~FDtVF~ 188 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLG-----QDPPVFELPLGVEDLPN-LGAFDTVFS 188 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhC-----CCccEEEcCcchhhccc-cCCcCEEEE
Confidence 477999999999999999995555679999999999776443211110 11223334467788866 579999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..||.|..+|- ..|+.++..|+||
T Consensus 189 MGVLYHrr~Pl--~~L~~Lk~~L~~g 212 (315)
T PF08003_consen 189 MGVLYHRRSPL--DHLKQLKDSLRPG 212 (315)
T ss_pred eeehhccCCHH--HHHHHHHHhhCCC
Confidence 99999999998 9999999999987
No 101
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.99 E-value=1.9e-09 Score=92.84 Aligned_cols=95 Identities=12% Similarity=0.041 Sum_probs=69.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC-CCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~-~~~~~~yDl 233 (262)
.++.+|||+|||+|.++..++... ..+|++||+|+.|++.|++++... ...+++++.+|+.+. ......+|.
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~------~~~~v~~~~~d~~~~~~~~~~~~d~ 112 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF------GVKNVEVIEGSAPECLAQLAPAPDR 112 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCCeEEEECchHHHHhhCCCCCCE
Confidence 357899999999999999998332 358999999999999999988542 124688999888652 111124566
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+.. ....+..+++++.+.|+||
T Consensus 113 v~~~------~~~~~~~~l~~~~~~Lkpg 135 (196)
T PRK07402 113 VCIE------GGRPIKEILQAVWQYLKPG 135 (196)
T ss_pred EEEE------CCcCHHHHHHHHHHhcCCC
Confidence 5432 1223458999999999997
No 102
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.99 E-value=1e-09 Score=101.55 Aligned_cols=98 Identities=19% Similarity=0.176 Sum_probs=73.5
Q ss_pred ceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
.+|||+|||+|.++..++... ..+|+++|.|+.+++.|++++.... ...+++|+++|+.+..+. ++||+|+|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~-----l~~~i~~~~~D~~~~l~~-~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG-----LEDRVTLIESDLFAALPG-RRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCCcEEEEECchhhhCCC-CCccEEEEC
Confidence 689999999999999999443 3489999999999999999985421 123589999998765443 589999998
Q ss_pred hHH------h-------hcCc----------hhHHHHHHHHHhhccCC
Q 024811 238 WCI------G-------HLTD----------DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 238 ~vl------~-------hltD----------~el~~~l~~~~~~LkPG 262 (262)
.+. . |-+. .....+++.+.+.|+||
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pg 256 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTED 256 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCC
Confidence 421 1 1111 11246899999999997
No 103
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.99 E-value=1.3e-09 Score=97.62 Aligned_cols=88 Identities=15% Similarity=0.038 Sum_probs=63.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|.++..+++....+|+++|+|+.|++.|++++.... ....+.+..+ ..+||+|++
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-----~~~~~~~~~~--------~~~fD~Vva 185 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-----VELNVYLPQG--------DLKADVIVA 185 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-----CCceEEEccC--------CCCcCEEEE
Confidence 578999999999999998883333459999999999999999875320 1012222221 127999998
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+...+ .+..++.++.+.|+||
T Consensus 186 ni~~~-----~~~~l~~~~~~~Lkpg 206 (250)
T PRK00517 186 NILAN-----PLLELAPDLARLLKPG 206 (250)
T ss_pred cCcHH-----HHHHHHHHHHHhcCCC
Confidence 75422 2347899999999997
No 104
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.98 E-value=8.2e-10 Score=97.85 Aligned_cols=90 Identities=19% Similarity=0.291 Sum_probs=73.1
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.+..+|||||+|.|.++..++ +.++ ++++.|. |..++.+++ . .+++++.+|+.+- .+ . ||+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~-~~~P~l~~~v~Dl-p~v~~~~~~--~----------~rv~~~~gd~f~~-~P-~-~D~ 161 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALA-RAYPNLRATVFDL-PEVIEQAKE--A----------DRVEFVPGDFFDP-LP-V-ADV 161 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHH-HHSTTSEEEEEE--HHHHCCHHH--T----------TTEEEEES-TTTC-CS-S-ESE
T ss_pred cCccEEEeccCcchHHHHHHH-HHCCCCcceeecc-Hhhhhcccc--c----------cccccccccHHhh-hc-c-ccc
Confidence 345689999999999999999 5555 6778898 888888888 1 3799999999833 32 4 999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+..++||+++|++.+.+|++++++|+||
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg 190 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPG 190 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEEC
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999986
No 105
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.96 E-value=1.4e-09 Score=101.44 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=70.6
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|.++..+++.... .|+++|.++.|++.|++++... ...++.++++|..+..++.++||+
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~------g~~nV~~i~gD~~~~~~~~~~fD~ 152 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL------GIENVIFVCGDGYYGVPEFAPYDV 152 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEeCChhhcccccCCccE
Confidence 45789999999999999999944332 5999999999999999987542 234688999998766544468999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|++...+.++++ .+.+.|+||
T Consensus 153 Ii~~~g~~~ip~--------~~~~~Lkpg 173 (322)
T PRK13943 153 IFVTVGVDEVPE--------TWFTQLKEG 173 (322)
T ss_pred EEECCchHHhHH--------HHHHhcCCC
Confidence 999866665543 244567765
No 106
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.95 E-value=9.8e-10 Score=92.17 Aligned_cols=74 Identities=12% Similarity=0.041 Sum_probs=61.7
Q ss_pred EEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 184 ~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+++|+|+.|++.|+++...... ....+++|+++|+++++.++++||+|++.++++|+.|.+ ++|+++.++||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~---~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~--~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR---SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRL--RAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc---cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHH--HHHHHHHHHcCcC
Confidence 4899999999999877542110 112468999999999987767999999999999999877 9999999999997
No 107
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.94 E-value=2.5e-09 Score=97.62 Aligned_cols=98 Identities=18% Similarity=0.150 Sum_probs=73.2
Q ss_pred ceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
.+|||+|||+|.++..++... ..+|+++|.|+.+++.|++++.... ...+++|+++|+.+..+. .+||+|+|+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~-----~~~~v~~~~~d~~~~~~~-~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ-----LEHRVEFIQSNLFEPLAG-QKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEECchhccCcC-CCccEEEEC
Confidence 689999999999999999443 2489999999999999999975421 112489999998765332 489999998
Q ss_pred hH-------------HhhcCc----------hhHHHHHHHHHhhccCC
Q 024811 238 WC-------------IGHLTD----------DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 238 ~v-------------l~hltD----------~el~~~l~~~~~~LkPG 262 (262)
.+ +.|-+. .....++..+.+.|+||
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~g 237 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPN 237 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCC
Confidence 42 222221 13446899999999986
No 108
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.93 E-value=1e-09 Score=96.69 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=74.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCC-CCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~-~~~~~~~~yDlI~ 235 (262)
.+.-|||||||+|-.+..|. ..+....+||+|+.|+++|.+.-- ..+++.+||- .+++.+++||.+|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~-~~Gh~wiGvDiSpsML~~a~~~e~-----------egdlil~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLS-DSGHQWIGVDISPSMLEQAVEREL-----------EGDLILCDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred CCcEEEEeccCCCcchheec-cCCceEEeecCCHHHHHHHHHhhh-----------hcCeeeeecCCCCCCCCCccceEE
Confidence 46789999999999999988 667889999999999999997321 2578888884 4566678999999
Q ss_pred hhhHH---------hhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCI---------GHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl---------~hltD~el~~~l~~~~~~LkPG 262 (262)
|-.++ .|.+...+..||..+...|++|
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg 153 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRG 153 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccC
Confidence 85543 3444556678999999998876
No 109
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.92 E-value=2.6e-09 Score=96.11 Aligned_cols=96 Identities=19% Similarity=0.120 Sum_probs=71.3
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC--CCccchh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVI 234 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~--~~~yDlI 234 (262)
+.+|||+|||+|.++..++... ..+|+++|.|+.+++.|++++... .++|+++|+.++.+. .++||+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~---------~~~~~~~D~~~~l~~~~~~~fDlV 157 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA---------GGTVHEGDLYDALPTALRGRVDIL 157 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---------CCEEEEeechhhcchhcCCCEeEE
Confidence 4589999999999999999443 347999999999999999997531 247899998765321 2579999
Q ss_pred hhhhHH------hhcCch------------------hHHHHHHHHHhhccCC
Q 024811 235 WVQWCI------GHLTDD------------------DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl------~hltD~------------------el~~~l~~~~~~LkPG 262 (262)
+++.+. ..++++ -+..+++.+.+.|+||
T Consensus 158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~g 209 (251)
T TIGR03704 158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPG 209 (251)
T ss_pred EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 998642 222211 1346888888999986
No 110
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.91 E-value=2.5e-09 Score=101.74 Aligned_cols=99 Identities=10% Similarity=-0.020 Sum_probs=75.9
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC--CCCCCccchh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDVI 234 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~--~~~~~~yDlI 234 (262)
+..+||||||+|..+..++... ...+.++|+++.|++.|.+++... ...++.++++|+..+ ..+++++|.|
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~------gL~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL------NLKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc------CCCcEEEEECCHHHhhhhCCCCceeEE
Confidence 4589999999999999999543 247999999999999999887542 345899999998654 2334799999
Q ss_pred hhhhHHhhcCch----hHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDD----DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~----el~~~l~~~~~~LkPG 262 (262)
+++++..|.... -...++..+.++|+||
T Consensus 197 ~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpG 228 (390)
T PRK14121 197 FVHFPVPWDKKPHRRVISEDFLNEALRVLKPG 228 (390)
T ss_pred EEeCCCCccccchhhccHHHHHHHHHHHcCCC
Confidence 987654432221 1137999999999997
No 111
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.91 E-value=4.1e-09 Score=94.97 Aligned_cols=88 Identities=17% Similarity=0.219 Sum_probs=73.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
...++||||+|-|.+|..++ ..|.+|.+.|.|+.|....+++ ..+ ..+..++...+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~k-------------g~~--vl~~~~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSKK-------------GFT--VLDIDDWQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHhC-------------CCe--EEehhhhhccCCceEEEee
Confidence 45789999999999999999 8999999999999998777764 222 2344445444468999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.++|-+..+|- .+|+.+++.|+|+
T Consensus 158 LNvLDRc~~P~--~LL~~i~~~l~p~ 181 (265)
T PF05219_consen 158 LNVLDRCDRPL--TLLRDIRRALKPN 181 (265)
T ss_pred hhhhhccCCHH--HHHHHHHHHhCCC
Confidence 99999999998 9999999999995
No 112
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.90 E-value=2.7e-09 Score=94.28 Aligned_cols=106 Identities=15% Similarity=0.126 Sum_probs=80.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccC------CCCCcceEEEEcCCCCCCCCC-
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA------PDMHKATNFFCVPLQDFTPET- 228 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~------~~~~~~v~f~~~d~~~~~~~~- 228 (262)
.++.+||..|||.|.-...|+ ..+.+|++||+|+.+++.+.+......... .....+++++++|+.++.+..
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La-~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLA-EQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHH-HTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCCCeEEEeCCCChHHHHHHH-HCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 356799999999999999999 667899999999999999843322110000 012346899999999987654
Q ss_pred CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++||+||=.-+|+=++.+.-.++.+.+.++|+||
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~ 148 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPG 148 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 5799999888888888777778999999999986
No 113
>PLN02366 spermidine synthase
Probab=98.88 E-value=6.2e-09 Score=96.53 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=76.7
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--CCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~~~~yDl 233 (262)
.+.+||+||||.|.++..+++.. ..+|++||+++.+++.|++.+..... .-..++++++.+|..++-. +.++||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~--~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV--GFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc--ccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 46799999999999999999432 35899999999999999998754211 0124589999999765521 1358999
Q ss_pred hhhhhHHhhcCchhH--HHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLTDDDF--VSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hltD~el--~~~l~~~~~~LkPG 262 (262)
|++-..-.+.+...+ .+|++.+++.|+||
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pg 199 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPG 199 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 998654333222222 36999999999996
No 114
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.85 E-value=4.3e-09 Score=95.61 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=65.7
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.+|..|+ +.+.+|+++|.++.|++.+++++.. .++.++++|+.+++.+.-.+|.|+
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~-~~~~~v~avE~d~~~~~~~~~~~~~---------~~v~~i~~D~~~~~~~~~~~~~vv 110 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLL-ERAAKVTAVEIDRDLAPILAETFAE---------DNLTIIEGDALKVDLSELQPLKVV 110 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHH-HhCCcEEEEECCHHHHHHHHHhhcc---------CceEEEEChhhcCCHHHcCcceEE
Confidence 356799999999999999999 5567999999999999999987631 378999999998865421258888
Q ss_pred hhhHHhhcCchhHHHHH
Q 024811 236 VQWCIGHLTDDDFVSFF 252 (262)
Q Consensus 236 s~~vl~hltD~el~~~l 252 (262)
+|.. .+++.+-+.+++
T Consensus 111 ~NlP-Y~iss~ii~~~l 126 (272)
T PRK00274 111 ANLP-YNITTPLLFHLL 126 (272)
T ss_pred EeCC-ccchHHHHHHHH
Confidence 8866 344443333343
No 115
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.85 E-value=4.6e-09 Score=89.84 Aligned_cols=91 Identities=16% Similarity=0.091 Sum_probs=65.4
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-------
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~------- 225 (262)
..++.+|||+|||+|.++..++..... +|+++|+|+.+ .. .++.+++.|+.+..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~-----------~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI-----------ENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC-----------CCceEEEeeCCChhHHHHHHH
Confidence 346789999999999999999954433 59999999865 11 24678888887642
Q ss_pred -CCCCccchhhhhhH--------HhhcCc-hhHHHHHHHHHhhccCC
Q 024811 226 -PETGRYDVIWVQWC--------IGHLTD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 226 -~~~~~yDlI~s~~v--------l~hltD-~el~~~l~~~~~~LkPG 262 (262)
...++||+|++..+ +.|+.. ..+..+|..+.+.|+||
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg 139 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK 139 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC
Confidence 12357999998643 333322 22347999999999997
No 116
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=4e-09 Score=90.92 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=62.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
.+..|+|+|||||+++...+.-....|.+||+++++++++++|... ...++.|+++|+.++. .++|.+++
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~-------l~g~v~f~~~dv~~~~---~~~dtvim 114 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE-------LLGDVEFVVADVSDFR---GKFDTVIM 114 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh-------hCCceEEEEcchhhcC---CccceEEE
Confidence 4667999999999999999844347899999999999999999864 3457999999999984 57999999
Q ss_pred hhHH
Q 024811 237 QWCI 240 (262)
Q Consensus 237 ~~vl 240 (262)
|.++
T Consensus 115 NPPF 118 (198)
T COG2263 115 NPPF 118 (198)
T ss_pred CCCC
Confidence 8764
No 117
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.85 E-value=7.3e-09 Score=93.94 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=74.6
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI 234 (262)
.+.+||++|||+|.++..+++.. ..+|+++|+++.+++.|++.+..... .-..++++++..|..++-. ..++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~--~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG--SYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc--cccCCceEEEECchHHHHHhCCCCccEE
Confidence 35599999999999999998443 46899999999999999998753211 0123467888888765421 13689999
Q ss_pred hhhhHHhhcCchh--HHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDD--FVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~e--l~~~l~~~~~~LkPG 262 (262)
++......-+... ..+|++.+++.|+||
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pg 179 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNED 179 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCC
Confidence 9875422222222 247999999999997
No 118
>PRK04457 spermidine synthase; Provisional
Probab=98.85 E-value=4.2e-09 Score=95.36 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=74.0
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI 234 (262)
++.+|||||||+|.++..++... ..+|++||+++++++.|++++... ....+++++.+|..++-. ..++||+|
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~-----~~~~rv~v~~~Da~~~l~~~~~~yD~I 140 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP-----ENGERFEVIEADGAEYIAVHRHSTDVI 140 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC-----CCCCceEEEECCHHHHHHhCCCCCCEE
Confidence 45689999999999999999443 247999999999999999987532 123578999999876522 23589999
Q ss_pred hhhhH-HhhcCch-hHHHHHHHHHhhccCC
Q 024811 235 WVQWC-IGHLTDD-DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~v-l~hltD~-el~~~l~~~~~~LkPG 262 (262)
++... -...+.. ...+|+++|++.|+||
T Consensus 141 ~~D~~~~~~~~~~l~t~efl~~~~~~L~pg 170 (262)
T PRK04457 141 LVDGFDGEGIIDALCTQPFFDDCRNALSSD 170 (262)
T ss_pred EEeCCCCCCCccccCcHHHHHHHHHhcCCC
Confidence 97531 1111111 1248999999999997
No 119
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.85 E-value=7.8e-09 Score=93.16 Aligned_cols=84 Identities=11% Similarity=0.104 Sum_probs=67.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++.+|||+|||+|.+|..|+ +.+.+|+++|.++.|++.+++++.. ..++.++++|+.+++.+ .||.|+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~-~~~~~v~~vEid~~~~~~l~~~~~~--------~~~v~ii~~D~~~~~~~--~~d~Vv 96 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELA-KRAKKVYAIELDPRLAEFLRDDEIA--------AGNVEIIEGDALKVDLP--EFNKVV 96 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHH-HhCCEEEEEECCHHHHHHHHHHhcc--------CCCEEEEEeccccCCch--hceEEE
Confidence 357799999999999999999 5577899999999999999998742 24789999999987653 589999
Q ss_pred hhhHHhhcCchhHHHH
Q 024811 236 VQWCIGHLTDDDFVSF 251 (262)
Q Consensus 236 s~~vl~hltD~el~~~ 251 (262)
+|.+. +.+.+.+..+
T Consensus 97 ~NlPy-~i~s~~~~~l 111 (258)
T PRK14896 97 SNLPY-QISSPITFKL 111 (258)
T ss_pred EcCCc-ccCcHHHHHH
Confidence 99774 3444333333
No 120
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1e-08 Score=89.82 Aligned_cols=85 Identities=20% Similarity=0.157 Sum_probs=72.8
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
+.++.+|||||||+|+.+.-|+ +...+|.-||..++..+.|++++... ...|+.+.++|-..--++..+||.|
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla-~l~~~V~siEr~~~L~~~A~~~L~~l------g~~nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLA-RLVGRVVSIERIEELAEQARRNLETL------GYENVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHH-HHhCeEEEEEEcHHHHHHHHHHHHHc------CCCceEEEECCcccCCCCCCCcCEE
Confidence 4578999999999999999999 77779999999999999999999765 3457999999987655555799999
Q ss_pred hhhhHHhhcCch
Q 024811 235 WVQWCIGHLTDD 246 (262)
Q Consensus 235 ~s~~vl~hltD~ 246 (262)
+..-....+++.
T Consensus 143 ~Vtaaa~~vP~~ 154 (209)
T COG2518 143 IVTAAAPEVPEA 154 (209)
T ss_pred EEeeccCCCCHH
Confidence 999887777763
No 121
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.83 E-value=1.5e-08 Score=98.14 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=75.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|..|..++... ..+|+++|.|+.|++.+++++... ...++.++++|+.++.+. ++||+
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~------g~~~v~~~~~Da~~~~~~-~~fD~ 321 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL------GITIIETIEGDARSFSPE-EQPDA 321 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh------CCCeEEEEeCcccccccC-CCCCE
Confidence 356799999999999999888433 347999999999999999998653 234689999999887543 68999
Q ss_pred hhhhh------HH-------hhcCchhH-------HHHHHHHHhhccCC
Q 024811 234 IWVQW------CI-------GHLTDDDF-------VSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~------vl-------~hltD~el-------~~~l~~~~~~LkPG 262 (262)
|++-. .+ .+++..++ ..+|.++.+.|+||
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 370 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG 370 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99521 11 12232222 25899999999997
No 122
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.5e-08 Score=93.38 Aligned_cols=95 Identities=20% Similarity=0.155 Sum_probs=67.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|-++...++-....|.++|.+|..++.|++|+..- .....+..-..+..+.. ..++||+|++
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N-----~v~~~~~~~~~~~~~~~-~~~~~DvIVA 235 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLN-----GVELLVQAKGFLLLEVP-ENGPFDVIVA 235 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHc-----CCchhhhcccccchhhc-ccCcccEEEe
Confidence 57899999999999999999555567999999999999999997531 11111112223333332 2269999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|- +.++ ++++...+.+.|+||
T Consensus 236 NI----LA~v-l~~La~~~~~~lkpg 256 (300)
T COG2264 236 NI----LAEV-LVELAPDIKRLLKPG 256 (300)
T ss_pred hh----hHHH-HHHHHHHHHHHcCCC
Confidence 95 3332 347888889999986
No 123
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.82 E-value=8.6e-09 Score=101.48 Aligned_cols=99 Identities=14% Similarity=0.095 Sum_probs=72.0
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
..+|||+|||+|.++..++... ..+|+++|.|+.+++.|++++.... ...+++++++|+.+..+ .++||+|+|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~-----l~~~v~~~~~D~~~~~~-~~~fDlIvs 212 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE-----VTDRIQIIHSNWFENIE-KQKFDFIVS 212 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC-----CccceeeeecchhhhCc-CCCccEEEE
Confidence 4689999999999999998543 3589999999999999999975321 12368899999865433 358999999
Q ss_pred hhHHh--------------hcC------c----hhHHHHHHHHHhhccCC
Q 024811 237 QWCIG--------------HLT------D----DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~--------------hlt------D----~el~~~l~~~~~~LkPG 262 (262)
+.+.. |-+ . .-...+++.+.+.|+||
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~g 262 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPN 262 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCC
Confidence 75311 100 0 01235778888899986
No 124
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.81 E-value=1.8e-08 Score=97.16 Aligned_cols=100 Identities=17% Similarity=0.085 Sum_probs=73.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--CCCccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYD 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~~~~yD 232 (262)
.++.+|||+|||+|..|..++.... .+|+++|.|+.|++.+++++... +-.++++++|+.+... ..++||
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-------g~~~~~~~~D~~~~~~~~~~~~fD 315 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-------GLKATVIVGDARDPAQWWDGQPFD 315 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc-------CCCeEEEEcCcccchhhcccCCCC
Confidence 3578999999999999999995433 48999999999999999998642 1236789999986532 235799
Q ss_pred hhhhhhH---Hhh---------c-Cchh-------HHHHHHHHHhhccCC
Q 024811 233 VIWVQWC---IGH---------L-TDDD-------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~v---l~h---------l-tD~e-------l~~~l~~~~~~LkPG 262 (262)
.|++..+ .++ . +..+ ..++|.++.+.|+||
T Consensus 316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpG 365 (427)
T PRK10901 316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPG 365 (427)
T ss_pred EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9995431 111 1 1111 236899999999997
No 125
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.81 E-value=6.6e-09 Score=96.23 Aligned_cols=75 Identities=15% Similarity=0.053 Sum_probs=62.6
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI~s 236 (262)
+.+|||+|||+|.++..|+ ..+.+|.++|.|+.|++.|++++... ...+++|+++|+.++.. ..+.||+|++
T Consensus 174 ~~~VLDl~cG~G~~sl~la-~~~~~V~gvD~s~~av~~A~~n~~~~------~l~~v~~~~~D~~~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCA-TPGMQLTGIEISAEAIACAKQSAAEL------GLTNVQFQALDSTQFATAQGEVPDLVLV 246 (315)
T ss_pred CCEEEEccCCCCHHHHHHH-hcCCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence 5789999999999999999 56789999999999999999997542 22478999999987643 2247999999
Q ss_pred hhH
Q 024811 237 QWC 239 (262)
Q Consensus 237 ~~v 239 (262)
+.+
T Consensus 247 dPP 249 (315)
T PRK03522 247 NPP 249 (315)
T ss_pred CCC
Confidence 865
No 126
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=1.1e-08 Score=93.61 Aligned_cols=71 Identities=24% Similarity=0.157 Sum_probs=56.2
Q ss_pred eeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 160 VALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
+|||+|||+|-++..++ ..++ +|+++|+|+.+++.|++|+... ...++.++.+|+.+- -.++||+|+||
T Consensus 113 ~ilDlGTGSG~iai~la-~~~~~~~V~a~Dis~~Al~~A~~Na~~~------~l~~~~~~~~dlf~~--~~~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALA-KEGPDAEVIAVDISPDALALARENAERN------GLVRVLVVQSDLFEP--LRGKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHH-hhCcCCeEEEEECCHHHHHHHHHHHHHc------CCccEEEEeeecccc--cCCceeEEEeC
Confidence 79999999999999999 5555 8999999999999999998642 113455666666543 23589999999
Q ss_pred hH
Q 024811 238 WC 239 (262)
Q Consensus 238 ~v 239 (262)
.+
T Consensus 184 PP 185 (280)
T COG2890 184 PP 185 (280)
T ss_pred CC
Confidence 75
No 127
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=1.8e-08 Score=97.23 Aligned_cols=101 Identities=13% Similarity=0.071 Sum_probs=76.9
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC----CCCC
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~----~~~~ 229 (262)
.++.+|||+|||+|..|..++.... .+|+++|.++.|++.+++++... ...++.+++.|..++. ...+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~------g~~~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL------GLKSIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc------CCCeEEEEeCChhhcccccccccc
Confidence 3578999999999999999995432 37999999999999999998653 2346899999998764 2236
Q ss_pred ccchhhhhh------HHhhcCch-------h-------HHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQW------CIGHLTDD-------D-------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~------vl~hltD~-------e-------l~~~l~~~~~~LkPG 262 (262)
+||.|++.- +++|-++. + ..++|.++.+.||||
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg 377 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG 377 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 899999632 34443331 1 246899999999997
No 128
>PRK01581 speE spermidine synthase; Validated
Probab=98.79 E-value=2.2e-08 Score=94.60 Aligned_cols=105 Identities=20% Similarity=0.240 Sum_probs=74.2
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhh--cccccccCCCCCcceEEEEcCCCCCCC-CCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~--l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yD 232 (262)
.+.+||++|||+|..+..+++.. ..+|++||++++|++.|++. +..... ..-..++++++.+|..++-. ..++||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~-~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNK-SAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcc-ccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 46799999999999999999432 36899999999999999972 211100 01124688999999988632 236899
Q ss_pred hhhhhhH--Hhh-cCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWC--IGH-LTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~v--l~h-ltD~el~~~l~~~~~~LkPG 262 (262)
+|++... ... ...---.+|++.|++.|+||
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg 261 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTED 261 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCC
Confidence 9999842 111 11111136999999999997
No 129
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.79 E-value=9.4e-09 Score=99.45 Aligned_cols=77 Identities=23% Similarity=0.211 Sum_probs=62.2
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC----CCCCcc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~----~~~~~y 231 (262)
.++.+|||+|||+|.++..|+ +.+.+|+++|.|+.|++.|++++... ...+++|+++|+.++. ...++|
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la-~~~~~V~gvD~s~~al~~A~~n~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLA-RQAAEVVGVEGVEAMVERARENARRN------GLDNVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHH-HhCCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEEeChHHhhhhhhhhcCCC
Confidence 356799999999999999999 55789999999999999999987532 2246899999997642 123579
Q ss_pred chhhhhhH
Q 024811 232 DVIWVQWC 239 (262)
Q Consensus 232 DlI~s~~v 239 (262)
|+|+++.+
T Consensus 369 D~Vi~dPP 376 (443)
T PRK13168 369 DKVLLDPP 376 (443)
T ss_pred CEEEECcC
Confidence 99998764
No 130
>PTZ00146 fibrillarin; Provisional
Probab=98.79 E-value=2.2e-08 Score=91.99 Aligned_cols=96 Identities=10% Similarity=-0.124 Sum_probs=67.7
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC---CCCCC
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETG 229 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~---~~~~~ 229 (262)
+.++.+|||+|||+|..+.+++.... ..|.+||+|+.|++...+.... ..++.++..|+..- ....+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--------r~NI~~I~~Da~~p~~y~~~~~ 201 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--------RPNIVPIIEDARYPQKYRMLVP 201 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCCEEEECCccChhhhhcccC
Confidence 45678999999999999999994443 3699999999866554444321 13678888887642 11125
Q ss_pred ccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++|+|++... . +| +...++.++.+.||||
T Consensus 202 ~vDvV~~Dva--~-pd-q~~il~~na~r~LKpG 230 (293)
T PTZ00146 202 MVDVIFADVA--Q-PD-QARIVALNAQYFLKNG 230 (293)
T ss_pred CCCEEEEeCC--C-cc-hHHHHHHHHHHhccCC
Confidence 7999998763 2 22 2225677899999997
No 131
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.77 E-value=2e-08 Score=89.25 Aligned_cols=95 Identities=13% Similarity=0.177 Sum_probs=81.1
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
.-.++|||||.|.+..+|..+...+++.+|.|-.|++.++..-. ..-...+..+|-+.+++.++++|+|+++
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd--------p~i~~~~~v~DEE~Ldf~ens~DLiisS 144 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD--------PSIETSYFVGDEEFLDFKENSVDLIISS 144 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC--------CceEEEEEecchhcccccccchhhhhhh
Confidence 34799999999999999997778899999999999999987421 2235677788888888877899999999
Q ss_pred hHHhhcCchhHHHHHHHHHhhccCC
Q 024811 238 WCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 238 ~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.++||.+|-. .-+.+|...|||.
T Consensus 145 lslHW~NdLP--g~m~~ck~~lKPD 167 (325)
T KOG2940|consen 145 LSLHWTNDLP--GSMIQCKLALKPD 167 (325)
T ss_pred hhhhhhccCc--hHHHHHHHhcCCC
Confidence 9999999965 7888999999994
No 132
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.76 E-value=2.8e-08 Score=95.99 Aligned_cols=101 Identities=12% Similarity=0.065 Sum_probs=75.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-CCCCccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-~~~~~yD 232 (262)
.++.+|||+|||+|..|..++... ..+|+++|.|+.+++.+++++... ...++.++..|..++. ...++||
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~------g~~~v~~~~~Da~~l~~~~~~~fD 309 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL------KLSSIEIKIADAERLTEYVQDTFD 309 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCeEEEEECchhhhhhhhhccCC
Confidence 457899999999999999999543 357999999999999999998653 2246889999998764 2236899
Q ss_pred hhhhhh---HHhhc----------Cchh-------HHHHHHHHHhhccCC
Q 024811 233 VIWVQW---CIGHL----------TDDD-------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~---vl~hl----------tD~e-------l~~~l~~~~~~LkPG 262 (262)
.|++.. .++.+ +..+ ..++|.++.+.|+||
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 359 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG 359 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999632 12222 1111 135799999999997
No 133
>PRK03612 spermidine synthase; Provisional
Probab=98.76 E-value=1.7e-08 Score=99.72 Aligned_cols=105 Identities=18% Similarity=0.095 Sum_probs=75.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhh--cccccccCCCCCcceEEEEcCCCCCCC-CCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~--l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yD 232 (262)
++.+|||+|||+|.++..+++... .+|++||+++++++.|+++ +...... .-..++++++..|..++-. .+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~-~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGG-ALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcc-ccCCCceEEEEChHHHHHHhCCCCCC
Confidence 467999999999999999994333 6899999999999999994 3221100 0123578999999887632 236899
Q ss_pred hhhhhhHHhhcCch-h--HHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDD-D--FVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~-e--l~~~l~~~~~~LkPG 262 (262)
+|++.......+.. . -.+|++.+++.|+||
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pg 408 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPD 408 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCC
Confidence 99998643222211 0 125999999999996
No 134
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.76 E-value=1.7e-08 Score=90.48 Aligned_cols=85 Identities=14% Similarity=0.157 Sum_probs=67.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc---
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD--- 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD--- 232 (262)
.++.+|||+|||+|.+|..|+ +.+..|+++|+++.|++.+++++.. ..+++++++|+.++++. .||
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~-~~~~~v~~iE~d~~~~~~l~~~~~~--------~~~v~v~~~D~~~~~~~--~~d~~~ 96 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLL-KRAKKVTAIEIDPRLAEILRKLLSL--------YERLEVIEGDALKVDLP--DFPKQL 96 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHH-HhCCcEEEEECCHHHHHHHHHHhCc--------CCcEEEEECchhcCChh--HcCCcc
Confidence 356799999999999999999 6678899999999999999987642 24789999999988653 577
Q ss_pred hhhhhhHHhhcCchhHHHHH
Q 024811 233 VIWVQWCIGHLTDDDFVSFF 252 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l 252 (262)
+|+++.. .|++.+-+.+++
T Consensus 97 ~vvsNlP-y~i~~~il~~ll 115 (253)
T TIGR00755 97 KVVSNLP-YNISSPLIFKLL 115 (253)
T ss_pred eEEEcCC-hhhHHHHHHHHh
Confidence 8888876 455655544554
No 135
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.75 E-value=4.1e-08 Score=94.99 Aligned_cols=101 Identities=14% Similarity=0.071 Sum_probs=74.8
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYD 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yD 232 (262)
.++.+|||+|||+|..|..++... ..+|+++|+++.+++.+++++... ...+++++++|+.++.. -.++||
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~------g~~~v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL------GLTNIETKALDARKVHEKFAEKFD 322 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCCcccccchhcccCC
Confidence 356799999999999999999543 347999999999999999998643 22458999999987632 125899
Q ss_pred hhhhhhH------HhhcC-------chhH-------HHHHHHHHhhccCC
Q 024811 233 VIWVQWC------IGHLT-------DDDF-------VSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~v------l~hlt-------D~el-------~~~l~~~~~~LkPG 262 (262)
+|++... +.|-+ ..++ ..+|..+.+.|+||
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9997532 11111 1111 35899999999997
No 136
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.75 E-value=9.1e-09 Score=89.78 Aligned_cols=78 Identities=21% Similarity=0.186 Sum_probs=62.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI~ 235 (262)
.+.+|||+|||+|.++..++.+...+|++||.++.+++.++++++.. ...+++++++|+.++.+ ...+||+|+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~------~~~~v~~~~~D~~~~l~~~~~~fDlV~ 126 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATL------KAGNARVVNTNALSFLAQPGTPHNVVF 126 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHh------CCCcEEEEEchHHHHHhhcCCCceEEE
Confidence 35699999999999999766466679999999999999999998653 12368999999876532 224799999
Q ss_pred hhhHH
Q 024811 236 VQWCI 240 (262)
Q Consensus 236 s~~vl 240 (262)
++.++
T Consensus 127 ~DPPy 131 (199)
T PRK10909 127 VDPPF 131 (199)
T ss_pred ECCCC
Confidence 99884
No 137
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.75 E-value=4.2e-08 Score=94.51 Aligned_cols=113 Identities=17% Similarity=0.072 Sum_probs=78.4
Q ss_pred HHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEE
Q 024811 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (262)
Q Consensus 138 s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f 216 (262)
++.++...+. ..++.+|||+|||+|..|..++.... .+|+++|.++.+++.+++++.... ....+.+
T Consensus 226 ~s~~~~~~L~-------~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g-----~~~~v~~ 293 (426)
T TIGR00563 226 SAQWVATWLA-------PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG-----LTIKAET 293 (426)
T ss_pred HHHHHHHHhC-------CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEE
Confidence 4445555543 33578999999999999999994432 479999999999999999986531 1113444
Q ss_pred EEcCCCCCCC--CCCccchhhhh------hHHhhcCch-------h-------HHHHHHHHHhhccCC
Q 024811 217 FCVPLQDFTP--ETGRYDVIWVQ------WCIGHLTDD-------D-------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 217 ~~~d~~~~~~--~~~~yDlI~s~------~vl~hltD~-------e-------l~~~l~~~~~~LkPG 262 (262)
.++|..+..+ ..++||.|++. .++++.++. + ..++|.++.++|+||
T Consensus 294 ~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg 361 (426)
T TIGR00563 294 KDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG 361 (426)
T ss_pred eccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6777655432 34689999852 245554441 1 246999999999997
No 138
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.75 E-value=1.9e-08 Score=92.75 Aligned_cols=89 Identities=12% Similarity=0.120 Sum_probs=68.3
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
..++.+|||||||+|.+|..|+ ..+.+|+++|.++.|++.+++++.... ...+++++++|+.++.. ..||.|
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll-~~~~~V~avEiD~~li~~l~~~~~~~~-----~~~~v~ii~~Dal~~~~--~~~d~V 105 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLL-QLAKKVIAIEIDPRMVAELKKRFQNSP-----LASKLEVIEGDALKTEF--PYFDVC 105 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHH-HhCCcEEEEECCHHHHHHHHHHHHhcC-----CCCcEEEEECCHhhhcc--cccCEE
Confidence 3457899999999999999999 557789999999999999999875321 12478999999988754 369999
Q ss_pred hhhhHHhhcCchhHHHHH
Q 024811 235 WVQWCIGHLTDDDFVSFF 252 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l 252 (262)
++|.+ .+++.+.+..++
T Consensus 106 vaNlP-Y~Istpil~~ll 122 (294)
T PTZ00338 106 VANVP-YQISSPLVFKLL 122 (294)
T ss_pred EecCC-cccCcHHHHHHH
Confidence 98865 344444433333
No 139
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.74 E-value=4.1e-08 Score=88.84 Aligned_cols=101 Identities=11% Similarity=-0.010 Sum_probs=74.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.++.+|||+|||+|..|..++.... ..|+++|.++.+++.+++++... ...++.+++.|...+....+.||.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~------g~~~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC------GVLNVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc------CCCcEEEecCCHHHhhhhccCCCE
Confidence 3578999999999999999984432 37999999999999999998653 224688899998776433357999
Q ss_pred hhhhhH------Hhh-------cCchh-------HHHHHHHHHhhccCC
Q 024811 234 IWVQWC------IGH-------LTDDD-------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~v------l~h-------ltD~e-------l~~~l~~~~~~LkPG 262 (262)
|++..+ +.+ .+..+ ..++|+.+.+.|+||
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 192 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG 192 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 986421 111 11111 135999999999996
No 140
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.73 E-value=6.2e-09 Score=91.52 Aligned_cols=84 Identities=19% Similarity=0.092 Sum_probs=62.7
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
+.++.+|||||||+|+.|.-|+.-.++ .|..||..+..++.|++++... ...++.++++|...-.+...+||
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~------~~~nv~~~~gdg~~g~~~~apfD 143 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL------GIDNVEVVVGDGSEGWPEEAPFD 143 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH------TTHSEEEEES-GGGTTGGG-SEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh------ccCceeEEEcchhhccccCCCcC
Confidence 557899999999999999999933333 5889999999999999999764 23488999999766545557999
Q ss_pred hhhhhhHHhhcC
Q 024811 233 VIWVQWCIGHLT 244 (262)
Q Consensus 233 lI~s~~vl~hlt 244 (262)
.|++...+..++
T Consensus 144 ~I~v~~a~~~ip 155 (209)
T PF01135_consen 144 RIIVTAAVPEIP 155 (209)
T ss_dssp EEEESSBBSS--
T ss_pred EEEEeeccchHH
Confidence 999998765554
No 141
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.71 E-value=2.5e-08 Score=93.41 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=70.5
Q ss_pred CCceeeEeeccccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCC----CCcceEEEEcCCCCC------C
Q 024811 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPD----MHKATNFFCVPLQDF------T 225 (262)
Q Consensus 157 ~~~~VLDlGcGtG~-lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~----~~~~v~f~~~d~~~~------~ 225 (262)
++.+|||+|||-|. +.+... .....+.++|+|...|+.|+++....+..... ..-...|+.+|...- .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~-~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQK-AKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHH-TT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 57899999999655 666555 66788999999999999999988322111000 012456788877542 2
Q ss_pred CCCCccchhhhhhHHhhcC-chh-HHHHHHHHHhhccCC
Q 024811 226 PETGRYDVIWVQWCIGHLT-DDD-FVSFFKRAKVNHSQT 262 (262)
Q Consensus 226 ~~~~~yDlI~s~~vl~hlt-D~e-l~~~l~~~~~~LkPG 262 (262)
+...+||+|-||+++||.= +++ ...+|+++...|+||
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G 179 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG 179 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence 2225999999999999984 333 456999999999997
No 142
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.71 E-value=2.2e-08 Score=95.79 Aligned_cols=101 Identities=15% Similarity=0.118 Sum_probs=73.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC----CCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~----~~~~yD 232 (262)
++.+|||+|||+|.++...+.....+|++||.|+.+++.|++++....- ...+++|+++|+.++-. ..++||
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl----~~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKL----DLSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 3678999999999999887744455899999999999999999864210 11368999999987621 235899
Q ss_pred hhhhhhHHhhcCc--------hhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTD--------DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD--------~el~~~l~~~~~~LkPG 262 (262)
+|++..+. ...+ ..+..++..+.++|+||
T Consensus 296 lVilDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~g 332 (396)
T PRK15128 296 VIVMDPPK-FVENKSQLMGACRGYKDINMLAIQLLNPG 332 (396)
T ss_pred EEEECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999653 1111 12345666788888886
No 143
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.70 E-value=4.1e-08 Score=84.60 Aligned_cols=95 Identities=16% Similarity=0.061 Sum_probs=77.6
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
+.++.+++|||||||.++..++ ..+ .+|++||-++++++..++|++.- ..+++.++.++..+.-+...+||
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~f------g~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARF------GVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHh------CCCcEEEEeccchHhhcCCCCCC
Confidence 4578899999999999999999 554 47999999999999999998653 35689999999987744333799
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.|+.... ..++ .+|+.|...|+||
T Consensus 105 aiFIGGg-~~i~-----~ile~~~~~l~~g 128 (187)
T COG2242 105 AIFIGGG-GNIE-----EILEAAWERLKPG 128 (187)
T ss_pred EEEECCC-CCHH-----HHHHHHHHHcCcC
Confidence 9999876 3332 7888999999886
No 144
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.69 E-value=1.9e-08 Score=89.68 Aligned_cols=136 Identities=17% Similarity=0.261 Sum_probs=92.8
Q ss_pred hhHHhhhhccchhhccccCCCCCCcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCC----c
Q 024811 107 REGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN----E 182 (262)
Q Consensus 107 ~~~~~yW~~~~~~~dgvlgGy~~is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~----~ 182 (262)
..+..||+......+ ..+-..++.|..-+++.++... .+..+||++|||.|+..-+|+ +..+ .
T Consensus 33 ~~~~k~wD~fy~~~~-----------~rFfkdR~wL~~Efpel~~~~~-~~~~~ilEvGCGvGNtvfPll-~~~~n~~l~ 99 (264)
T KOG2361|consen 33 REASKYWDTFYKIHE-----------NRFFKDRNWLLREFPELLPVDE-KSAETILEVGCGVGNTVFPLL-KTSPNNRLK 99 (264)
T ss_pred cchhhhhhhhhhhcc-----------ccccchhHHHHHhhHHhhCccc-cChhhheeeccCCCcccchhh-hcCCCCCeE
Confidence 356889976543332 1111234555544444433221 123389999999999999999 5444 4
Q ss_pred EEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCC----CCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhh
Q 024811 183 VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD----FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVN 258 (262)
Q Consensus 183 V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~----~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~ 258 (262)
|.+.|.||.+++.-+++..... .++.-...|+.. -+++.+++|.|++-++|.-++.+...++++++.++
T Consensus 100 v~acDfsp~Ai~~vk~~~~~~e-------~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~l 172 (264)
T KOG2361|consen 100 VYACDFSPRAIELVKKSSGYDE-------SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTL 172 (264)
T ss_pred EEEcCCChHHHHHHHhccccch-------hhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHH
Confidence 7888999999999999865421 223333334322 12445899999999999999988888999999999
Q ss_pred ccCC
Q 024811 259 HSQT 262 (262)
Q Consensus 259 LkPG 262 (262)
||||
T Consensus 173 lKPG 176 (264)
T KOG2361|consen 173 LKPG 176 (264)
T ss_pred hCCC
Confidence 9998
No 145
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.69 E-value=2.5e-08 Score=101.76 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=75.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI~ 235 (262)
++.+|||+|||+|.++..++.....+|++||.|+.+++.|++|+..-.- ...+++|+++|+.++.. ..++||+|+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~----~~~~v~~i~~D~~~~l~~~~~~fDlIi 613 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGL----SGRQHRLIQADCLAWLKEAREQFDLIF 613 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CccceEEEEccHHHHHHHcCCCcCEEE
Confidence 3679999999999999999944345799999999999999999864210 11368999999877531 135899999
Q ss_pred hhhH-Hhh------cC--chhHHHHHHHHHhhccCC
Q 024811 236 VQWC-IGH------LT--DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~v-l~h------lt--D~el~~~l~~~~~~LkPG 262 (262)
+... +.. .. ..+...++..+.++|+||
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~g 649 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPG 649 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCC
Confidence 9754 111 10 123457888889999987
No 146
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.68 E-value=2.2e-08 Score=92.27 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=61.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++.+|||+|||+|-++...++-...+|.++|.+|.+++.|++|+..- .... ++......+.. .++||+|++
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N-----~~~~--~~~v~~~~~~~--~~~~dlvvA 231 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELN-----GVED--RIEVSLSEDLV--EGKFDLVVA 231 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHT-----T-TT--CEEESCTSCTC--CS-EEEEEE
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHc-----CCCe--eEEEEEecccc--cccCCEEEE
Confidence 56799999999999999999444567999999999999999997541 1112 33222333332 279999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|-...= +..++..+.+.|+||
T Consensus 232 NI~~~v-----L~~l~~~~~~~l~~~ 252 (295)
T PF06325_consen 232 NILADV-----LLELAPDIASLLKPG 252 (295)
T ss_dssp ES-HHH-----HHHHHHHCHHHEEEE
T ss_pred CCCHHH-----HHHHHHHHHHhhCCC
Confidence 864222 235666666677664
No 147
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.65 E-value=7.3e-08 Score=85.89 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=78.7
Q ss_pred HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEE
Q 024811 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (262)
Q Consensus 139 ~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f 216 (262)
-.||..++. ..++.+|||+|||+|..+..++... ..+|+.+|.++++++.|+++++.+. ...++++
T Consensus 57 g~~L~~l~~-------~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g-----l~~~i~~ 124 (234)
T PLN02781 57 GLFLSMLVK-------IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG-----VDHKINF 124 (234)
T ss_pred HHHHHHHHH-------HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEE
Confidence 456655554 1246799999999999999888433 2479999999999999999987642 2246899
Q ss_pred EEcCCCCCCC------CCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 217 FCVPLQDFTP------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 217 ~~~d~~~~~~------~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+|+.+.-+ +.++||+|++... .+....++..+.+.|+||
T Consensus 125 ~~gda~~~L~~l~~~~~~~~fD~VfiDa~-----k~~y~~~~~~~~~ll~~G 171 (234)
T PLN02781 125 IQSDALSALDQLLNNDPKPEFDFAFVDAD-----KPNYVHFHEQLLKLVKVG 171 (234)
T ss_pred EEccHHHHHHHHHhCCCCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCC
Confidence 9999977521 1358999987521 133447888899999997
No 148
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.62 E-value=7.3e-08 Score=92.76 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=61.3
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC----CCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~----~~~~yD 232 (262)
++.+|||+|||+|.++..|+ +.+.+|+++|+|+.|++.|++++... ...++.|+.+|+.++.+ ..++||
T Consensus 292 ~~~~vLDl~cG~G~~sl~la-~~~~~V~~vE~~~~av~~a~~n~~~~------~~~nv~~~~~d~~~~l~~~~~~~~~~D 364 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLA-KQAKSVVGIEVVPESVEKAQQNAELN------GIANVEFLAGTLETVLPKQPWAGQIPD 364 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHH-HhCCEEEEEEcCHHHHHHHHHHHHHh------CCCceEEEeCCHHHHHHHHHhcCCCCC
Confidence 45799999999999999999 56778999999999999999997542 23478999999876421 124799
Q ss_pred hhhhhhH
Q 024811 233 VIWVQWC 239 (262)
Q Consensus 233 lI~s~~v 239 (262)
+|++..+
T Consensus 365 ~vi~dPP 371 (431)
T TIGR00479 365 VLLLDPP 371 (431)
T ss_pred EEEECcC
Confidence 9997654
No 149
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.60 E-value=9.1e-08 Score=90.80 Aligned_cols=76 Identities=13% Similarity=0.020 Sum_probs=62.5
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-CCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~yDlI~s 236 (262)
+.+|||+|||+|.++..++ ..+.+|.+||.++.+++.|++++... ...+++|+++|+.++... ..+||+|++
T Consensus 234 ~~~vLDL~cG~G~~~l~la-~~~~~v~~vE~~~~av~~a~~N~~~~------~~~~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCA-GPDTQLTGIEIESEAIACAQQSAQML------GLDNLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred CCEEEEccCCccHHHHHHh-hcCCeEEEEECCHHHHHHHHHHHHHc------CCCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence 5689999999999999999 56789999999999999999997542 224789999999876431 246999999
Q ss_pred hhHH
Q 024811 237 QWCI 240 (262)
Q Consensus 237 ~~vl 240 (262)
..+-
T Consensus 307 DPPr 310 (374)
T TIGR02085 307 NPPR 310 (374)
T ss_pred CCCC
Confidence 9773
No 150
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.58 E-value=1.3e-07 Score=81.42 Aligned_cols=99 Identities=14% Similarity=0.174 Sum_probs=72.0
Q ss_pred ceeeEeeccccHHHHHHHHhcCCc-EEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~-V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
.+|||+|||.|.+...|++..|.. .++||-|++.++.|+...+.- .....++|.+.|+.+-....++||+|.--
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~-----~~~n~I~f~q~DI~~~~~~~~qfdlvlDK 143 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD-----GFSNEIRFQQLDITDPDFLSGQFDLVLDK 143 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc-----CCCcceeEEEeeccCCcccccceeEEeec
Confidence 399999999999999999877776 999999999999988765431 12234999999998754444678877654
Q ss_pred hH-----Hh-hcCchhHHHHHHHHHhhccCC
Q 024811 238 WC-----IG-HLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 238 ~v-----l~-hltD~el~~~l~~~~~~LkPG 262 (262)
.. |+ -..+..+..++..+.++|+||
T Consensus 144 GT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~ 174 (227)
T KOG1271|consen 144 GTLDAISLSPDGPVGRLVVYLDSVEKLLSPG 174 (227)
T ss_pred CceeeeecCCCCcccceeeehhhHhhccCCC
Confidence 32 22 122222345788888888886
No 151
>PLN02672 methionine S-methyltransferase
Probab=98.54 E-value=1.8e-07 Score=98.82 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=61.2
Q ss_pred CceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccc----------cCCCCCcceEEEEcCCCCCCC
Q 024811 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENH----------MAPDMHKATNFFCVPLQDFTP 226 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~----------~~~~~~~~v~f~~~d~~~~~~ 226 (262)
+.+|||+|||+|.++..|+.... .+|+++|.|+.+++.|++|+..-.- ..+....+++|+++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 45899999999999999995432 4799999999999999999853100 000112368999999987543
Q ss_pred CC-CccchhhhhhH
Q 024811 227 ET-GRYDVIWVQWC 239 (262)
Q Consensus 227 ~~-~~yDlI~s~~v 239 (262)
.. .+||+||||.+
T Consensus 199 ~~~~~fDlIVSNPP 212 (1082)
T PLN02672 199 DNNIELDRIVGCIP 212 (1082)
T ss_pred ccCCceEEEEECCC
Confidence 21 36999999964
No 152
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.48 E-value=4e-07 Score=79.30 Aligned_cols=106 Identities=20% Similarity=0.275 Sum_probs=67.1
Q ss_pred CCceeeEeeccccH----HHHHHHH--h-cCC---cEEEEeCCHHHHHHHHhhcccc--------------c-cc-C---
Q 024811 157 QHLVALDCGSGIGR----ITKNLLI--R-YFN---EVDLLEPVSHFLDAARESLAPE--------------N-HM-A--- 207 (262)
Q Consensus 157 ~~~~VLDlGcGtG~----lt~~La~--~-~~~---~V~~VD~s~~mld~Ar~~l~~a--------------~-~~-~--- 207 (262)
+..+|...||++|- ++..|.. . ... +|.++|+|+.+|+.|++-+=.. - .. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 46899999999996 3333332 0 122 7899999999999998632000 0 00 0
Q ss_pred ---CCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 208 ---PDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 208 ---~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
...-..++|...|+.+..+..+.||+|+|.+|+.|++++...++++++.+.|+||
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pg 168 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPG 168 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEE
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCC
Confidence 0112478999999998434457999999999999999998889999999999996
No 153
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.46 E-value=2e-07 Score=86.23 Aligned_cols=122 Identities=11% Similarity=0.075 Sum_probs=84.7
Q ss_pred hHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEE
Q 024811 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (262)
Q Consensus 137 ~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f 216 (262)
.-.++++..|.+.. .++...++|+|||-|.-...--+.....+.++|+.+.-|+.|+++...-..+.....=.+.|
T Consensus 101 nfNNwIKs~LI~~y----~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f 176 (389)
T KOG1975|consen 101 NFNNWIKSVLINLY----TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVF 176 (389)
T ss_pred hhhHHHHHHHHHHH----hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEE
Confidence 33456666554322 33577899999998886666554666789999999999999998765432221111124678
Q ss_pred EEcCCCC------CCCCCCccchhhhhhHHhhc-Cc-hhHHHHHHHHHhhccCC
Q 024811 217 FCVPLQD------FTPETGRYDVIWVQWCIGHL-TD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 217 ~~~d~~~------~~~~~~~yDlI~s~~vl~hl-tD-~el~~~l~~~~~~LkPG 262 (262)
+.+|-.. +++.+.+||+|-||+++||. .. +....+|++++..|+||
T Consensus 177 ~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpG 230 (389)
T KOG1975|consen 177 IAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPG 230 (389)
T ss_pred EEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCC
Confidence 8877643 22333349999999999986 33 44557999999999998
No 154
>PRK04148 hypothetical protein; Provisional
Probab=98.46 E-value=1e-06 Score=72.43 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=63.2
Q ss_pred CCceeeEeeccccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-CCccchh
Q 024811 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~-lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~yDlI 234 (262)
++.+|||+|||+|. ++..|. +.+.+|+++|.++..++.++++ .++++..|+.+-.++ -..+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~-~~G~~ViaIDi~~~aV~~a~~~-------------~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLK-ESGFDVIVIDINEKAVEKAKKL-------------GLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHH-HCCCEEEEEECCHHHHHHHHHh-------------CCeEEECcCCCCCHHHHhcCCEE
Confidence 35789999999996 999888 7788999999999999999886 357888999876543 1568998
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhh
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVN 258 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~ 258 (262)
+|.. +.+|+...+-++++-
T Consensus 82 ysir-----pp~el~~~~~~la~~ 100 (134)
T PRK04148 82 YSIR-----PPRDLQPFILELAKK 100 (134)
T ss_pred EEeC-----CCHHHHHHHHHHHHH
Confidence 8764 244555555555543
No 155
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.42 E-value=4.1e-07 Score=77.42 Aligned_cols=100 Identities=15% Similarity=0.057 Sum_probs=64.0
Q ss_pred CCceeeEeeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC----CCCCcc
Q 024811 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~-~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~----~~~~~y 231 (262)
++.+|||+|||+|-.+..++.. ...+|++.|..+ .++..+.++..-.. ....++.+...|+.+-. ....+|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS-SSB
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEecCcccccccccccC
Confidence 5779999999999999999944 267899999999 99999998854110 12346778888876521 123589
Q ss_pred chhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 232 DVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|+++-+++.- ..+..+++.+.++|+|+
T Consensus 121 D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~ 149 (173)
T PF10294_consen 121 DVILASDVLYDE--ELFEPLVRTLKRLLKPN 149 (173)
T ss_dssp SEEEEES--S-G--GGHHHHHHHHHHHBTT-
T ss_pred CEEEEecccchH--HHHHHHHHHHHHHhCCC
Confidence 999999998763 33448999999998874
No 156
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.41 E-value=4.1e-07 Score=81.03 Aligned_cols=78 Identities=21% Similarity=0.204 Sum_probs=50.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHH-HHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA-ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~-Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.+.+|||+|||||.+|..|++....+|++||+++.|+.. .+++..... ....|++ ..+++++.++-..||+++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~----~~~~ni~--~~~~~~~~~d~~~~Dvsf 148 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKV----LERTNIR--YVTPADIFPDFATFDVSF 148 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeE----eecCCcc--cCCHhHcCCCceeeeEEE
Confidence 466899999999999999995435689999999988875 444321000 0111222 334444433335799888
Q ss_pred hhhHH
Q 024811 236 VQWCI 240 (262)
Q Consensus 236 s~~vl 240 (262)
++.++
T Consensus 149 iS~~~ 153 (228)
T TIGR00478 149 ISLIS 153 (228)
T ss_pred eehHh
Confidence 87654
No 157
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.40 E-value=4e-07 Score=85.89 Aligned_cols=74 Identities=19% Similarity=0.163 Sum_probs=58.6
Q ss_pred ceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-----------
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----------- 227 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~----------- 227 (262)
.+|||+|||+|.++..|+ +.+.+|++||.|+.|++.|++++... ...+++|+++|+.++...
T Consensus 199 ~~vlDl~~G~G~~sl~la-~~~~~v~~vE~~~~av~~a~~n~~~~------~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALA-QNFRRVLATEIAKPSVNAAQYNIAAN------NIDNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CcEEEEeccccHHHHHHH-HhCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEEcCHHHHHHHHhhcccccccc
Confidence 479999999999999998 66789999999999999999998542 234689999998775321
Q ss_pred -----CCccchhhhhhH
Q 024811 228 -----TGRYDVIWVQWC 239 (262)
Q Consensus 228 -----~~~yDlI~s~~v 239 (262)
...||+||.-.+
T Consensus 272 ~~~~~~~~~d~v~lDPP 288 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPP 288 (353)
T ss_pred ccccccCCCCEEEECCC
Confidence 013788887665
No 158
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.39 E-value=3.7e-07 Score=86.32 Aligned_cols=74 Identities=22% Similarity=0.185 Sum_probs=59.6
Q ss_pred ceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-----------
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----------- 227 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~----------- 227 (262)
.+|||++||+|.++..|+ +.+.+|++||.|+.|++.|++++... ...+++|+++|+.++-..
T Consensus 208 ~~vLDl~~G~G~~sl~la-~~~~~v~~vE~~~~ai~~a~~N~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 208 GDLLELYCGNGNFTLALA-RNFRRVLATEISKPSVAAAQYNIAAN------GIDNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CeEEEEeccccHHHHHHH-hhCCEEEEEECCHHHHHHHHHHHHHh------CCCcEEEEECCHHHHHHHHhhcccccccc
Confidence 579999999999999998 66789999999999999999997542 234789999998774210
Q ss_pred -----CCccchhhhhhH
Q 024811 228 -----TGRYDVIWVQWC 239 (262)
Q Consensus 228 -----~~~yDlI~s~~v 239 (262)
..+||+|+.-.+
T Consensus 281 ~~~~~~~~~D~v~lDPP 297 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPP 297 (362)
T ss_pred cccccCCCCCEEEECCC
Confidence 125899998776
No 159
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.39 E-value=5.5e-07 Score=87.52 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=69.7
Q ss_pred CceeeEeeccccHHHHHHHHhcC------CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCcc
Q 024811 158 HLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~------~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~y 231 (262)
...|||+|||+|-++...+ +.+ .+|.+||-|+.++...++.+..- .-..+++++.+|++++..+ .++
T Consensus 187 ~~vVldVGAGrGpL~~~al-~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n-----~w~~~V~vi~~d~r~v~lp-ekv 259 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFAL-QAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN-----GWGDKVTVIHGDMREVELP-EKV 259 (448)
T ss_dssp T-EEEEES-TTSHHHHHHH-HTTHHHCCESEEEEEESSTHHHHHHHHHHHHT-----TTTTTEEEEES-TTTSCHS-S-E
T ss_pred ceEEEEeCCCccHHHHHHH-HHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc-----CCCCeEEEEeCcccCCCCC-Cce
Confidence 4579999999999998887 443 58999999999988877654321 1235799999999999875 599
Q ss_pred chhhhhhHHhhcCchh-HHHHHHHHHhhccCC
Q 024811 232 DVIWVQWCIGHLTDDD-FVSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl~hltD~e-l~~~l~~~~~~LkPG 262 (262)
|+|||=+. +.+-+.| ..+.|....+.|+||
T Consensus 260 DIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~ 290 (448)
T PF05185_consen 260 DIIVSELL-GSFGDNELSPECLDAADRFLKPD 290 (448)
T ss_dssp EEEEE----BTTBTTTSHHHHHHHGGGGEEEE
T ss_pred eEEEEecc-CCccccccCHHHHHHHHhhcCCC
Confidence 99999864 5555544 346788888899885
No 160
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.37 E-value=1.5e-06 Score=79.90 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=77.3
Q ss_pred CceeeEeeccccH----HHHHHHHhcC------CcEEEEeCCHHHHHHHHhhccccc---------------c-------
Q 024811 158 HLVALDCGSGIGR----ITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPEN---------------H------- 205 (262)
Q Consensus 158 ~~~VLDlGcGtG~----lt~~La~~~~------~~V~~VD~s~~mld~Ar~~l~~a~---------------~------- 205 (262)
..+|...||.||- ++..|. +.+ -+|.++|+|+.+|+.|++-+=... .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~-e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLA-DTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHH-HhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 4799999999996 344444 321 259999999999999987531100 0
Q ss_pred ---cCCCCCcceEEEEcCCCCCCC-CCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 206 ---MAPDMHKATNFFCVPLQDFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 206 ---~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.....-..++|...|+.+.++ ..+.||+|+|.+++.|++++...++++++.+.|+||
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg 255 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD 255 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence 001112468899999987532 247899999999999999988889999999999997
No 161
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.35 E-value=1.3e-06 Score=74.15 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=78.9
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-----CC
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-----~~ 227 (262)
..++..|||+|.|||-+|+.++.+.. ..++++|-|+++.....+... .++++++|..+.. ..
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-----------~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-----------GVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-----------CccccccchhhHHHHHhhcC
Confidence 34577899999999999999995543 478999999999999998764 4568888888764 22
Q ss_pred CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 228 ~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
...||.|+|...+--++-..-.++++.+...|.+|
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~g 149 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAG 149 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCC
Confidence 35899999999888888777678888888888765
No 162
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=1.1e-06 Score=79.53 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=64.0
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCC-ccch
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG-RYDV 233 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~-~yDl 233 (262)
..++..|||||+|+|.+|..|+ +.+..|++||.++.++...++.... ..+++++.+|+..++++.- .++.
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll-~~~~~v~aiEiD~~l~~~L~~~~~~--------~~n~~vi~~DaLk~d~~~l~~~~~ 98 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLL-ERAARVTAIEIDRRLAEVLKERFAP--------YDNLTVINGDALKFDFPSLAQPYK 98 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHH-hhcCeEEEEEeCHHHHHHHHHhccc--------ccceEEEeCchhcCcchhhcCCCE
Confidence 3347899999999999999999 7788899999999999999998752 3589999999999877521 5788
Q ss_pred hhhhhH
Q 024811 234 IWVQWC 239 (262)
Q Consensus 234 I~s~~v 239 (262)
|++|..
T Consensus 99 vVaNlP 104 (259)
T COG0030 99 VVANLP 104 (259)
T ss_pred EEEcCC
Confidence 888864
No 163
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.32 E-value=1e-06 Score=82.29 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=74.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
++..|||+|||||.++..-++....+|.+||.|.-+ +.|++-+.. +.....++++.+.+++...+.++.|+|+|
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~-----N~~~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKD-----NGLEDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHh-----cCccceEEEeecceEEEecCccceeEEee
Confidence 577999999999999999996666789999988766 888876642 12334689999999998655579999999
Q ss_pred hhHHhhcC-chhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLT-DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hlt-D~el~~~l~~~~~~LkPG 262 (262)
-|.=+.+- +--+..+|-.--+.|+||
T Consensus 134 EWMGy~Ll~EsMldsVl~ARdkwL~~~ 160 (346)
T KOG1499|consen 134 EWMGYFLLYESMLDSVLYARDKWLKEG 160 (346)
T ss_pred hhhhHHHHHhhhhhhhhhhhhhccCCC
Confidence 98533332 223336666666777775
No 164
>PLN02823 spermine synthase
Probab=98.30 E-value=2.7e-06 Score=79.84 Aligned_cols=101 Identities=16% Similarity=0.171 Sum_probs=74.6
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yDlI 234 (262)
.+.+||.||+|.|.++..+++.. ..+|++||+++++++.|++.+...... -..++++++..|...+-. ..++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~--~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA--FCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc--ccCCceEEEEChhHHHHhhCCCCccEE
Confidence 45689999999999999999433 468999999999999999987532110 124678999999887632 23689999
Q ss_pred hhhhH-------HhhcCchhHHHHHH-HHHhhccCC
Q 024811 235 WVQWC-------IGHLTDDDFVSFFK-RAKVNHSQT 262 (262)
Q Consensus 235 ~s~~v-------l~hltD~el~~~l~-~~~~~LkPG 262 (262)
++-.. ..++-.. +|++ .|++.|+||
T Consensus 181 i~D~~dp~~~~~~~~Lyt~---eF~~~~~~~~L~p~ 213 (336)
T PLN02823 181 IGDLADPVEGGPCYQLYTK---SFYERIVKPKLNPG 213 (336)
T ss_pred EecCCCccccCcchhhccH---HHHHHHHHHhcCCC
Confidence 98631 1222222 5888 899999996
No 165
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=2.1e-06 Score=77.24 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=79.4
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCcc
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~y 231 (262)
++.++.+|||.|.|+|.+|..|+...+ .+|+.+|.-+.+.+.|++|+..+. ...++.+..+|+.+...+ ..|
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~-----l~d~v~~~~~Dv~~~~~~-~~v 164 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG-----LGDRVTLKLGDVREGIDE-EDV 164 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc-----cccceEEEeccccccccc-ccc
Confidence 466899999999999999999994334 379999999999999999997651 233488889999887665 489
Q ss_pred chhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 232 DVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 232 DlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|+|+. -++||- .++.++..+|+||
T Consensus 165 Dav~L-----Dmp~PW--~~le~~~~~Lkpg 188 (256)
T COG2519 165 DAVFL-----DLPDPW--NVLEHVSDALKPG 188 (256)
T ss_pred CEEEE-----cCCChH--HHHHHHHHHhCCC
Confidence 99764 567888 8999999999997
No 166
>PLN02476 O-methyltransferase
Probab=98.30 E-value=1.8e-06 Score=79.07 Aligned_cols=96 Identities=13% Similarity=0.040 Sum_probs=73.6
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC------CC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------ET 228 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~------~~ 228 (262)
+..+|||+|+|+|..|..++... ...|+.+|.++++.+.|+++++.+. ...+++++.+|..+.-+ ..
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG-----l~~~I~li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG-----VSHKVNVKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEEcCHHHHHHHHHhcccC
Confidence 46799999999999999999432 2368999999999999999997652 22478999999866421 12
Q ss_pred CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++||+|+.-.. ......++..+.+.|+||
T Consensus 193 ~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~G 221 (278)
T PLN02476 193 SSYDFAFVDAD-----KRMYQDYFELLLQLVRVG 221 (278)
T ss_pred CCCCEEEECCC-----HHHHHHHHHHHHHhcCCC
Confidence 58999887532 234457888888999987
No 167
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.30 E-value=1.4e-06 Score=77.98 Aligned_cols=104 Identities=16% Similarity=0.156 Sum_probs=72.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHhhccccccc-CCCC------------------------
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHM-APDM------------------------ 210 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~-~V~~VD~s~~mld~Ar~~l~~a~~~-~~~~------------------------ 210 (262)
.+..+|||||-.|.+|..+++..++ .|.++|+++..|..|++++.....+ ....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 3668999999999999999955443 5899999999999999988532111 0000
Q ss_pred -----------CcceEEEEcCCCCCCCCCCccchhhhhhHH--hhcC--chhHHHHHHHHHhhccCC
Q 024811 211 -----------HKATNFFCVPLQDFTPETGRYDVIWVQWCI--GHLT--DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 211 -----------~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl--~hlt--D~el~~~l~~~~~~LkPG 262 (262)
..+..+...|+.++. ...||+|.|-.+. -||. |+.+..||+++.++|.||
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~--~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pg 202 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMI--QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPG 202 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhc--cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcC
Confidence 011112223344332 3589999987652 4554 678999999999999997
No 168
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.29 E-value=7.4e-07 Score=78.14 Aligned_cols=96 Identities=14% Similarity=0.205 Sum_probs=71.4
Q ss_pred CCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC----C--C
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----E--T 228 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~----~--~ 228 (262)
+..+|||||+++|..|..++... ..+|+.+|.++++.+.|++++..+. ...+++++.+|..++-+ . .
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag-----~~~~I~~~~gda~~~l~~l~~~~~~ 119 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG-----LDDRIEVIEGDALEVLPELANDGEE 119 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT-----GGGGEEEEES-HHHHHHHHHHTTTT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC-----CCCcEEEEEeccHhhHHHHHhccCC
Confidence 46799999999999999999433 3489999999999999999997652 23579999999876421 1 2
Q ss_pred CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++||+|+.-.. ..+-..++..+.+.|+||
T Consensus 120 ~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~g 148 (205)
T PF01596_consen 120 GQFDFVFIDAD-----KRNYLEYFEKALPLLRPG 148 (205)
T ss_dssp TSEEEEEEEST-----GGGHHHHHHHHHHHEEEE
T ss_pred CceeEEEEccc-----ccchhhHHHHHhhhccCC
Confidence 58999987531 223346777788888875
No 169
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.28 E-value=1.1e-06 Score=82.14 Aligned_cols=84 Identities=12% Similarity=0.029 Sum_probs=58.8
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEE-cCCCCCC----CCCCc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFT----PETGR 230 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~-~d~~~~~----~~~~~ 230 (262)
...+|||||||+|-+...|+.+. .-+++++|+++.+++.|+++++.-. ....++.+.. .+..++. ...++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np----~l~~~I~~~~~~~~~~i~~~i~~~~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANP----GLNGAIRLRLQKDSKAIFKGIIHKNER 189 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcc----CCcCcEEEEEccchhhhhhcccccCCc
Confidence 46799999999998888887443 4579999999999999999986420 1123566643 3332221 12368
Q ss_pred cchhhhhhHHhhcC
Q 024811 231 YDVIWVQWCIGHLT 244 (262)
Q Consensus 231 yDlI~s~~vl~hlt 244 (262)
||+|+||..++--.
T Consensus 190 fDlivcNPPf~~s~ 203 (321)
T PRK11727 190 FDATLCNPPFHASA 203 (321)
T ss_pred eEEEEeCCCCcCcc
Confidence 99999999865433
No 170
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.28 E-value=1.1e-06 Score=75.81 Aligned_cols=80 Identities=18% Similarity=0.005 Sum_probs=60.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC---CCC-ccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETG-RYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~---~~~-~yD 232 (262)
.+.+|||++||+|.++..++.+....|++||.++.+++.++++++... ...+++++++|+.++-. ... .||
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~-----~~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK-----SGEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CcccEEEEehhHHHHHHHhhccCCCce
Confidence 367899999999999999995545589999999999999999986431 11357899999965411 112 478
Q ss_pred hhhhhhHHh
Q 024811 233 VIWVQWCIG 241 (262)
Q Consensus 233 lI~s~~vl~ 241 (262)
+|+.-..+.
T Consensus 124 vv~~DPPy~ 132 (189)
T TIGR00095 124 VIYLDPPFF 132 (189)
T ss_pred EEEECcCCC
Confidence 888776654
No 171
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.24 E-value=2.9e-06 Score=77.08 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=65.2
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
+.++++.|||||.|||++|..|+ +.+.+|.++|.++.|+....++.+.- ......+++.+|+...+.+ .||.
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lL-e~~kkVvA~E~Dprmvael~krv~gt-----p~~~kLqV~~gD~lK~d~P--~fd~ 126 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLL-EAGKKVVAVEIDPRMVAELEKRVQGT-----PKSGKLQVLHGDFLKTDLP--RFDG 126 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHH-HhcCeEEEEecCcHHHHHHHHHhcCC-----CccceeeEEecccccCCCc--ccce
Confidence 46678999999999999999999 88999999999999999999987642 2235688999999887643 6999
Q ss_pred hhhhhH
Q 024811 234 IWVQWC 239 (262)
Q Consensus 234 I~s~~v 239 (262)
+|+|..
T Consensus 127 cVsNlP 132 (315)
T KOG0820|consen 127 CVSNLP 132 (315)
T ss_pred eeccCC
Confidence 998643
No 172
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=5.2e-07 Score=75.11 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=68.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
.+.+++|+|||.|.++....-.....|.++|++|+.++++..|..+. .-++++.++|+.+..+..+.||.++.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf-------EvqidlLqcdildle~~~g~fDtavi 120 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF-------EVQIDLLQCDILDLELKGGIFDTAVI 120 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHh-------hhhhheeeeeccchhccCCeEeeEEe
Confidence 46789999999999996666223457999999999999999998654 23578999999998887789999999
Q ss_pred hhHHhhc---CchhHHH
Q 024811 237 QWCIGHL---TDDDFVS 250 (262)
Q Consensus 237 ~~vl~hl---tD~el~~ 250 (262)
+..++-= .|-++++
T Consensus 121 NppFGTk~~~aDm~fv~ 137 (185)
T KOG3420|consen 121 NPPFGTKKKGADMEFVS 137 (185)
T ss_pred cCCCCcccccccHHHHH
Confidence 9876432 4444443
No 173
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.21 E-value=6.5e-06 Score=72.14 Aligned_cols=97 Identities=11% Similarity=0.084 Sum_probs=67.5
Q ss_pred eeeEeeccccHHHHHHHHhcCCcEE--EEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC--CC------CCC
Q 024811 160 VALDCGSGIGRITKNLLIRYFNEVD--LLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TP------ETG 229 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~~V~--~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~--~~------~~~ 229 (262)
+|||||||||.-+.+++ +.+++++ -.|+++..+...+..+..+... .. ..-+..|+.+- +- ..+
T Consensus 28 ~vLEiaSGtGqHa~~FA-~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~--Nv---~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFA-QALPHLTWQPSDPDDNLRPSIRAWIAEAGLP--NV---RPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred eEEEEcCCccHHHHHHH-HHCCCCEEcCCCCChHHHhhHHHHHHhcCCc--cc---CCCeEeecCCCCCccccccccCCC
Confidence 59999999999999999 6677654 4488888776555554432110 01 11122333221 11 235
Q ss_pred ccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+||+|+|.+++|-++-.....+|+.+.++|+||
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~g 134 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKPG 134 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 899999999998888888778999999999996
No 174
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.20 E-value=3.5e-06 Score=74.62 Aligned_cols=110 Identities=17% Similarity=0.221 Sum_probs=79.7
Q ss_pred hhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcc
Q 024811 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (262)
Q Consensus 136 ~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~ 213 (262)
...-.||..++. .....+|||||.++|..+..++.... .+++.+|.++++.+.|++++..+.- ...
T Consensus 45 ~e~g~~L~~L~~-------~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----~~~ 112 (219)
T COG4122 45 PETGALLRLLAR-------LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----DDR 112 (219)
T ss_pred hhHHHHHHHHHH-------hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----cce
Confidence 345567777765 23578999999999999999994443 2688999999999999999987632 234
Q ss_pred eEEEE-cCCCCCCC--CCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 214 TNFFC-VPLQDFTP--ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 214 v~f~~-~d~~~~~~--~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++. +|..+.-. ..++||+|+.-.. ...-..+|..+.++|+||
T Consensus 113 i~~~~~gdal~~l~~~~~~~fDliFIDad-----K~~yp~~le~~~~lLr~G 159 (219)
T COG4122 113 IELLLGGDALDVLSRLLDGSFDLVFIDAD-----KADYPEYLERALPLLRPG 159 (219)
T ss_pred EEEEecCcHHHHHHhccCCCccEEEEeCC-----hhhCHHHHHHHHHHhCCC
Confidence 67777 46654321 2479999986521 122337899999999997
No 175
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.18 E-value=8.4e-07 Score=77.90 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=69.8
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
+.++||+|+|-|-+|..++ ..|.+|.+.|+|..|++..+.+- ... ....++...+-+||+|.|.
T Consensus 113 ~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk~----------ynV-----l~~~ew~~t~~k~dli~cl 176 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKKN----------YNV-----LTEIEWLQTDVKLDLILCL 176 (288)
T ss_pred CeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhcC----------Cce-----eeehhhhhcCceeehHHHH
Confidence 5799999999999999999 88999999999999999887751 111 2223333333589999999
Q ss_pred hHHhhcCchhHHHHHHHHHhhccC
Q 024811 238 WCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 238 ~vl~hltD~el~~~l~~~~~~LkP 261 (262)
+.+..--++- .+|+.+..+|.|
T Consensus 177 NlLDRc~~p~--kLL~Di~~vl~p 198 (288)
T KOG3987|consen 177 NLLDRCFDPF--KLLEDIHLVLAP 198 (288)
T ss_pred HHHHhhcChH--HHHHHHHHHhcc
Confidence 9998888887 899999999887
No 176
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.15 E-value=6e-06 Score=74.58 Aligned_cols=88 Identities=13% Similarity=0.138 Sum_probs=67.3
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC---Cccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRYD 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~---~~yD 232 (262)
.++..|||+|+|+|.+|..|+ +.+.+|.+||.++.+.+..++++.. ..++.++.+|+.++.... ....
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~-~~~~~v~~vE~d~~~~~~L~~~~~~--------~~~~~vi~~D~l~~~~~~~~~~~~~ 99 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELL-KRGKRVIAVEIDPDLAKHLKERFAS--------NPNVEVINGDFLKWDLYDLLKNQPL 99 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHH-HHSSEEEEEESSHHHHHHHHHHCTT--------CSSEEEEES-TTTSCGGGHCSSSEE
T ss_pred CCCCEEEEeCCCCccchhhHh-cccCcceeecCcHhHHHHHHHHhhh--------cccceeeecchhccccHHhhcCCce
Confidence 357899999999999999999 6569999999999999999998752 358999999999986542 3556
Q ss_pred hhhhhhHHhhcCchhHHHHHH
Q 024811 233 VIWVQWCIGHLTDDDFVSFFK 253 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~ 253 (262)
.|++|... +++.+=+.+++.
T Consensus 100 ~vv~NlPy-~is~~il~~ll~ 119 (262)
T PF00398_consen 100 LVVGNLPY-NISSPILRKLLE 119 (262)
T ss_dssp EEEEEETG-TGHHHHHHHHHH
T ss_pred EEEEEecc-cchHHHHHHHhh
Confidence 77887664 555443334443
No 177
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.14 E-value=3.2e-06 Score=73.45 Aligned_cols=97 Identities=14% Similarity=0.070 Sum_probs=69.9
Q ss_pred eeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC---CCCCccchhh
Q 024811 160 VALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVIW 235 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~---~~~~~yDlI~ 235 (262)
.+||||||.|.....++... -..+.+||++...+..|.+++... ...|+.++++|+..+- +++++.|-|+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~------~l~Nv~~~~~da~~~l~~~~~~~~v~~i~ 93 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR------GLKNVRFLRGDARELLRRLFPPGSVDRIY 93 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH------TTSSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh------cccceEEEEccHHHHHhhcccCCchheEE
Confidence 79999999999999999553 346899999999999999887654 4579999999998731 2347899999
Q ss_pred hhhHHhhcCchh------HHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDD------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~e------l~~~l~~~~~~LkPG 262 (262)
.+++=-|..... -..|+..+.+.|+||
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~g 126 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPG 126 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEE
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCC
Confidence 988632222110 115999999999986
No 178
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.14 E-value=4.2e-06 Score=73.41 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=68.7
Q ss_pred HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhccccccc---CCCCCcce
Q 024811 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHM---APDMHKAT 214 (262)
Q Consensus 139 ~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~---~~~~~~~v 214 (262)
-.++..++.. + ++.+....+|+|||.|++....+... +..+.|||..+...+.|+......+.. .......+
T Consensus 28 ~~~~~~il~~-~---~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v 103 (205)
T PF08123_consen 28 PEFVSKILDE-L---NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKV 103 (205)
T ss_dssp HHHHHHHHHH-T---T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EE
T ss_pred HHHHHHHHHH-h---CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3455566542 2 35568899999999999988777444 556999999999999998765432211 11123467
Q ss_pred EEEEcCCCCCCCCC---CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 215 NFFCVPLQDFTPET---GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 215 ~f~~~d~~~~~~~~---~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.+..+|+.+.+... ..-|+|++++.+ =++++...|.+....||||
T Consensus 104 ~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~---F~~~l~~~L~~~~~~lk~G 151 (205)
T PF08123_consen 104 ELIHGDFLDPDFVKDIWSDADVVFVNNTC---FDPDLNLALAELLLELKPG 151 (205)
T ss_dssp EEECS-TTTHHHHHHHGHC-SEEEE--TT---T-HHHHHHHHHHHTTS-TT
T ss_pred eeeccCccccHhHhhhhcCCCEEEEeccc---cCHHHHHHHHHHHhcCCCC
Confidence 88888887642110 246888887642 1566667778888888887
No 179
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.12 E-value=5e-06 Score=75.87 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=64.6
Q ss_pred CCceeeEeeccccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~---~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.+.+|||+|||+|..+-.+. +. ..++++||.|+.|++.++.-+...... ...........+..+ ..+.|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~-~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~-----~~~~~~~~~~~~~~~-~~~~DL 105 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAR-EVWPSLKEYTCVDRSPEMLELAKRLLRAGPNN-----RNAEWRRVLYRDFLP-FPPDDL 105 (274)
T ss_pred CCceEEEecCChHHHHHHHH-HHhcCceeeeeecCCHHHHHHHHHHHhccccc-----ccchhhhhhhccccc-CCCCcE
Confidence 46689999999998665544 43 457899999999999999876532111 111111111111111 134599
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhcc
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHS 260 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~Lk 260 (262)
|+++++|..+++.+...+++++.+.+.
T Consensus 106 vi~s~~L~EL~~~~r~~lv~~LW~~~~ 132 (274)
T PF09243_consen 106 VIASYVLNELPSAARAELVRSLWNKTA 132 (274)
T ss_pred EEEehhhhcCCchHHHHHHHHHHHhcc
Confidence 999999999999766678888866554
No 180
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.10 E-value=7.1e-06 Score=74.68 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=63.8
Q ss_pred HHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEE
Q 024811 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (262)
Q Consensus 138 s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f 216 (262)
++.++...+.. +++.....+..+||+|||+|-++..++.... ..|++||.|+.++..|.+|+....- ...+..
T Consensus 130 TEE~V~~Vid~-~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-----~g~i~v 203 (328)
T KOG2904|consen 130 TEEWVEAVIDA-LNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-----SGRIEV 203 (328)
T ss_pred HHHHHHHHHHH-HhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh-----cCceEE
Confidence 45555555442 2211222456899999999999999994432 4689999999999999999875422 234455
Q ss_pred EEcCCCCC----C-CCCCccchhhhhhH
Q 024811 217 FCVPLQDF----T-PETGRYDVIWVQWC 239 (262)
Q Consensus 217 ~~~d~~~~----~-~~~~~yDlI~s~~v 239 (262)
+.-+++.- . ...+++|+++||..
T Consensus 204 ~~~~me~d~~~~~~l~~~~~dllvsNPP 231 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLLEGKIDLLVSNPP 231 (328)
T ss_pred EecccccccccccccccCceeEEecCCC
Confidence 54434321 1 12379999999975
No 181
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.10 E-value=9.5e-06 Score=75.82 Aligned_cols=99 Identities=17% Similarity=0.152 Sum_probs=73.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
.+..|||+|||.|.++...+.....+|.+||.|+ |.+.|++.++. +....++..+.+.+++...+ ++.|+|||
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~-----N~~~~rItVI~GKiEdieLP-Ek~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVAS-----NNLADRITVIPGKIEDIELP-EKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhc-----CCccceEEEccCccccccCc-hhccEEEe
Confidence 3568999999999999988855567999999875 88999987753 22345789999999999875 69999998
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
-..=..+-++...+-.-.+++.|+|.
T Consensus 250 EPMG~mL~NERMLEsYl~Ark~l~P~ 275 (517)
T KOG1500|consen 250 EPMGYMLVNERMLESYLHARKWLKPN 275 (517)
T ss_pred ccchhhhhhHHHHHHHHHHHhhcCCC
Confidence 75433334443333333466888883
No 182
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.06 E-value=4.2e-06 Score=77.28 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=65.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--CC--Cc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ET--GR 230 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~~--~~ 230 (262)
++..+||++||.|..|..++.... ..|.++|.++.|++.|++++.. ..++.+++.++.++.. .. .+
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--------~~ri~~i~~~f~~l~~~l~~~~~~ 90 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--------FGRFTLVHGNFSNLKEVLAEGLGK 90 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--------CCcEEEEeCCHHHHHHHHHcCCCc
Confidence 567999999999999999995432 4799999999999999998743 2378999999987632 11 27
Q ss_pred cchhhhhh--HHhhcCchh
Q 024811 231 YDVIWVQW--CIGHLTDDD 247 (262)
Q Consensus 231 yDlI~s~~--vl~hltD~e 247 (262)
+|.|++.. +.+++.+++
T Consensus 91 vDgIl~DLGvSs~Qld~~~ 109 (296)
T PRK00050 91 VDGILLDLGVSSPQLDDAE 109 (296)
T ss_pred cCEEEECCCccccccCCCc
Confidence 99998864 457777766
No 183
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.04 E-value=2.7e-05 Score=58.77 Aligned_cols=91 Identities=18% Similarity=0.155 Sum_probs=61.4
Q ss_pred eeEeeccccHHHHHHHHhcC---CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCC--CCCCC-Cccchh
Q 024811 161 ALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPET-GRYDVI 234 (262)
Q Consensus 161 VLDlGcGtG~lt~~La~~~~---~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~--~~~~~-~~yDlI 234 (262)
++|+|||+|..+ .+. ... ..+.++|+++.+++.++..... .. ...+.+...+... ++... ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLA-RLGGRGAYVVGVDLSPEMLALARARAEG-AG-----LGLVDFVVADALGGVLPFEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHH-HhCCCCceEEEEeCCHHHHHHHHhhhhh-cC-----CCceEEEEeccccCCCCCCCCCceeEE
Confidence 999999999977 333 332 2688899999999996554321 10 0115777777765 44443 379999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++...+++.. ....+..+.+.|+|+
T Consensus 124 ~~~~~~~~~~---~~~~~~~~~~~l~~~ 148 (257)
T COG0500 124 ISLLVLHLLP---PAKALRELLRVLKPG 148 (257)
T ss_pred eeeeehhcCC---HHHHHHHHHHhcCCC
Confidence 4344444555 448999999999874
No 184
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.03 E-value=1.1e-05 Score=72.73 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=77.9
Q ss_pred HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEE
Q 024811 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (262)
Q Consensus 139 ~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f 216 (262)
-.||..++.. .+..+|||||+++|.-|..++... ..+|+.+|.+++..+.|++++..+. ...++++
T Consensus 68 g~lL~~l~~~-------~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag-----~~~~I~~ 135 (247)
T PLN02589 68 GQFLNMLLKL-------INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG-----VAHKIDF 135 (247)
T ss_pred HHHHHHHHHH-------hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-----CCCceEE
Confidence 3566655541 246799999999999999999433 2479999999999999999997652 2357899
Q ss_pred EEcCCCCCCCC-------CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 217 FCVPLQDFTPE-------TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 217 ~~~d~~~~~~~-------~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.++..+.-+. .++||+|+.-.- ...-..++..+.+.|+||
T Consensus 136 ~~G~a~e~L~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~G 183 (247)
T PLN02589 136 REGPALPVLDQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVG 183 (247)
T ss_pred EeccHHHHHHHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCC
Confidence 99988765221 258999987532 112336777888899887
No 185
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.03 E-value=5e-05 Score=70.93 Aligned_cols=100 Identities=16% Similarity=0.065 Sum_probs=74.9
Q ss_pred CCceeeEeeccccHHHHHHHHhc-----CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEE--EEcCCCCC---CC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF--FCVPLQDF---TP 226 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-----~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f--~~~d~~~~---~~ 226 (262)
++..++|+|||.|+=+..|+... ...+..||+|..+++.+.+++... ..+.+.+ +++|..+. .+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~------~~p~l~v~~l~gdy~~~l~~l~ 149 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG------NFSHVRCAGLLGTYDDGLAWLK 149 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc------cCCCeEEEEEEecHHHHHhhcc
Confidence 46689999999999999888443 135889999999999999998621 2344555 67777552 11
Q ss_pred C---CCccchhhhh-hHHhhcCchhHHHHHHHHHh-hccCC
Q 024811 227 E---TGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKV-NHSQT 262 (262)
Q Consensus 227 ~---~~~yDlI~s~-~vl~hltD~el~~~l~~~~~-~LkPG 262 (262)
. .....+|+.- .+++++++++...||+++++ .|+||
T Consensus 150 ~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~ 190 (319)
T TIGR03439 150 RPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPS 190 (319)
T ss_pred cccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC
Confidence 1 1235666554 58999999999999999999 99886
No 186
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.01 E-value=3.5e-06 Score=71.48 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=54.0
Q ss_pred eeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC--C-ccchhhh
Q 024811 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--G-RYDVIWV 236 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~--~-~yDlI~s 236 (262)
.|+|+-||.|..+..++ +.+.+|.+||.++..++.|+.|+.... ...++.|+++|+.++...- . .||+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA-~~~~~Viaidid~~~~~~a~hNa~vYG-----v~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFA-RTFDRVIAIDIDPERLECAKHNAEVYG-----VADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHH-HTT-EEEEEES-HHHHHHHHHHHHHTT------GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHH-HhCCeEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 59999999999999999 779999999999999999999987541 2358999999998764321 1 2899998
Q ss_pred hhH
Q 024811 237 QWC 239 (262)
Q Consensus 237 ~~v 239 (262)
+.+
T Consensus 76 SPP 78 (163)
T PF09445_consen 76 SPP 78 (163)
T ss_dssp ---
T ss_pred CCC
Confidence 753
No 187
>PRK00536 speE spermidine synthase; Provisional
Probab=97.99 E-value=1.8e-05 Score=71.87 Aligned_cols=94 Identities=16% Similarity=0.104 Sum_probs=70.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
+.+.+||=||.|-|...++++ ++-.+|++||+++++++.+++.+...... -..++++++.. +.+- ..++||+|+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvL-kh~~~v~mVeID~~Vv~~~k~~lP~~~~~--~~DpRv~l~~~-~~~~--~~~~fDVII 144 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLF-KYDTHVDFVQADEKILDSFISFFPHFHEV--KNNKNFTHAKQ-LLDL--DIKKYDLII 144 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHH-CcCCeeEEEECCHHHHHHHHHHCHHHHHh--hcCCCEEEeeh-hhhc--cCCcCCEEE
Confidence 357899999999999999999 55569999999999999999977643221 13456676652 2211 126899999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+-.. ++. .|++.|++.|+||
T Consensus 145 vDs~-----~~~--~fy~~~~~~L~~~ 164 (262)
T PRK00536 145 CLQE-----PDI--HKIDGLKRMLKED 164 (262)
T ss_pred EcCC-----CCh--HHHHHHHHhcCCC
Confidence 8742 334 7999999999996
No 188
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.97 E-value=8.7e-06 Score=77.71 Aligned_cols=93 Identities=14% Similarity=0.100 Sum_probs=67.4
Q ss_pred CceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
+.+|||++||+|.++..++.... ..|+++|.++.+++.+++|+..- ...++.+++.|+..+-....+||+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N------~~~~~~v~~~Da~~~l~~~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN------GLENEKVFNKDANALLHEERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCceEEEhhhHHHHHhhcCCCCEEEE
Confidence 35899999999999999985543 48999999999999999998542 123567899998765331357999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
... ..+. .++..+.+.++||
T Consensus 132 DP~----Gs~~--~~l~~al~~~~~~ 151 (382)
T PRK04338 132 DPF----GSPA--PFLDSAIRSVKRG 151 (382)
T ss_pred CCC----CCcH--HHHHHHHHHhcCC
Confidence 752 2222 5666655555553
No 189
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.94 E-value=1.7e-05 Score=67.93 Aligned_cols=101 Identities=18% Similarity=0.139 Sum_probs=69.2
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CC--------cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FN--------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~--------~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~ 225 (262)
.++..+||-=||+|.+..+.+... .. .+.++|.++.+++.|++|+..+. ....+.+.+.|+.+++
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag-----~~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG-----VEDYIDFIQWDARELP 101 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------CGGEEEEE--GGGGG
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc-----cCCceEEEecchhhcc
Confidence 457799999999999998876222 12 26799999999999999997652 2346889999999997
Q ss_pred CCCCccchhhhhhHHhhc-Cch-hH----HHHHHHHHhhccC
Q 024811 226 PETGRYDVIWVQWCIGHL-TDD-DF----VSFFKRAKVNHSQ 261 (262)
Q Consensus 226 ~~~~~yDlI~s~~vl~hl-tD~-el----~~~l~~~~~~LkP 261 (262)
..++.+|+|+++...+.- .+. +. .++++++.++|+|
T Consensus 102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 445799999999886643 321 22 3467777777765
No 190
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.91 E-value=1.8e-05 Score=74.59 Aligned_cols=59 Identities=24% Similarity=0.209 Sum_probs=46.7
Q ss_pred ceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~ 224 (262)
.+|||+=||+|++|..|+ ..+.+|.+||.++.+++.|++++..- ...++.|++++.+++
T Consensus 198 ~~vlDlycG~G~fsl~la-~~~~~V~gvE~~~~av~~A~~Na~~N------~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLA-KKAKKVIGVEIVEEAVEDARENAKLN------GIDNVEFIRGDAEDF 256 (352)
T ss_dssp TEEEEES-TTTCCHHHHH-CCSSEEEEEES-HHHHHHHHHHHHHT------T--SEEEEE--SHHC
T ss_pred CcEEEEeecCCHHHHHHH-hhCCeEEEeeCCHHHHHHHHHHHHHc------CCCcceEEEeeccch
Confidence 379999999999999999 88999999999999999999998642 356899998877654
No 191
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.91 E-value=1.3e-05 Score=70.10 Aligned_cols=93 Identities=15% Similarity=0.199 Sum_probs=62.3
Q ss_pred CCceeeEeeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~-~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
++..|||+-||+|.++..+++. ....|.++|.+|..++.+++++..- .....+..+++|..++.+ .+.||-|+
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lN-----kv~~~i~~~~~D~~~~~~-~~~~drvi 174 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLN-----KVENRIEVINGDAREFLP-EGKFDRVI 174 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHT-----T-TTTEEEEES-GGG----TT-EEEEE
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHc-----CCCCeEEEEcCCHHHhcC-ccccCEEE
Confidence 5789999999999999999942 4678999999999999999998642 223468899999999866 57999888
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
++.+ +.+ . .||..+..++++
T Consensus 175 m~lp--~~~--~--~fl~~~~~~~~~ 194 (200)
T PF02475_consen 175 MNLP--ESS--L--EFLDAALSLLKE 194 (200)
T ss_dssp E--T--SSG--G--GGHHHHHHHEEE
T ss_pred ECCh--HHH--H--HHHHHHHHHhcC
Confidence 8753 111 1 455556665554
No 192
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.90 E-value=5.9e-06 Score=74.70 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=59.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
....|.|+|||-+.++. .....|.-+|+.+ .+-+++.+||.+.+.++++.|++|+
T Consensus 180 ~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a---------------------~~~~V~~cDm~~vPl~d~svDvaV~ 234 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----SERHKVHSFDLVA---------------------VNERVIACDMRNVPLEDESVDVAVF 234 (325)
T ss_pred CceEEEecccchhhhhh----ccccceeeeeeec---------------------CCCceeeccccCCcCccCcccEEEe
Confidence 46789999999999876 3345666665411 1346788999999888899999998
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+|+- || +..|++++.|+|+||
T Consensus 235 CLSLMg-tn--~~df~kEa~RiLk~g 257 (325)
T KOG3045|consen 235 CLSLMG-TN--LADFIKEANRILKPG 257 (325)
T ss_pred eHhhhc-cc--HHHHHHHHHHHhccC
Confidence 877653 44 448999999999997
No 193
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.90 E-value=2.3e-05 Score=72.01 Aligned_cols=103 Identities=16% Similarity=0.185 Sum_probs=76.0
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-CCccchhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~yDlI~ 235 (262)
..+||=||.|.|..++.+++.. ..++++||++++.++.|++.+...... . ..++++++..|..+|-.. ..+||+|+
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~-~-~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG-A-DDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc-c-CCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 3599999999999999999443 478999999999999999999754211 1 157889999998887432 24799999
Q ss_pred hhhH--HhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWC--IGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~v--l~hltD~el~~~l~~~~~~LkPG 262 (262)
+-.. ...-+.--=..|++.|+++|+|+
T Consensus 155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~ 183 (282)
T COG0421 155 VDSTDPVGPAEALFTEEFYEGCRRALKED 183 (282)
T ss_pred EcCCCCCCcccccCCHHHHHHHHHhcCCC
Confidence 7642 11111100126999999999985
No 194
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.90 E-value=6.2e-05 Score=69.19 Aligned_cols=101 Identities=15% Similarity=0.082 Sum_probs=81.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcC---CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC---CCCc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGR 230 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~---~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~---~~~~ 230 (262)
.+-+||||.||.||.-...+.... .+|.+.|-|+.-++..++.++.. .....++|.++|..+... ..-.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~-----gL~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER-----GLEDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc-----CCccceEEEecCCCCHhHhhccCCC
Confidence 467999999999999888885543 46899999999999999998652 122345999999887531 1236
Q ss_pred cchhhhhhHHhhcCchhHH-HHHHHHHhhccCC
Q 024811 231 YDVIWVQWCIGHLTDDDFV-SFFKRAKVNHSQT 262 (262)
Q Consensus 231 yDlI~s~~vl~hltD~el~-~~l~~~~~~LkPG 262 (262)
+++++++..+..|+|.+++ ..|+-+.++|.||
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pg 242 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPG 242 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCC
Confidence 8999999999999998755 4899999999987
No 195
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=3e-05 Score=68.19 Aligned_cols=82 Identities=18% Similarity=0.168 Sum_probs=61.4
Q ss_pred CCCceeeEeeccccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHhhccccccc----CCCCCcceEEEEcCCCCCCCCC
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHM----APDMHKATNFFCVPLQDFTPET 228 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~---~~~V~~VD~s~~mld~Ar~~l~~a~~~----~~~~~~~v~f~~~d~~~~~~~~ 228 (262)
.++.+.||+|+|+|++|.-++.-. +..+.+||.-++.++.+++++...-.+ ..-......|+.+|-....++.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 368899999999999999887222 334589999999999999998643210 0001246788889988776767
Q ss_pred Cccchhhhh
Q 024811 229 GRYDVIWVQ 237 (262)
Q Consensus 229 ~~yDlI~s~ 237 (262)
.+||.|.+-
T Consensus 161 a~YDaIhvG 169 (237)
T KOG1661|consen 161 APYDAIHVG 169 (237)
T ss_pred CCcceEEEc
Confidence 899999887
No 196
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.85 E-value=3.5e-05 Score=63.23 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=68.4
Q ss_pred CCceeeEeeccccHHHHHHHH-----hcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCcc
Q 024811 157 QHLVALDCGSGIGRITKNLLI-----RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~-----~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~y 231 (262)
+...|+|+|||-|+++..|+. ....+|.+||.++..++.+.++....... ...+..+...++.+... ....
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~ 100 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD---LEKRLSFIQGDIADESS-SDPP 100 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch---hhccchhhccchhhhcc-cCCC
Confidence 577999999999999999995 44568999999999999999887654211 12456677776665533 3578
Q ss_pred chhhhhhHHhhcCchhHHHHHH
Q 024811 232 DVIWVQWCIGHLTDDDFVSFFK 253 (262)
Q Consensus 232 DlI~s~~vl~hltD~el~~~l~ 253 (262)
++++.-.+-+-+++.-+..|++
T Consensus 101 ~~~vgLHaCG~Ls~~~l~~~~~ 122 (141)
T PF13679_consen 101 DILVGLHACGDLSDRALRLFIR 122 (141)
T ss_pred eEEEEeecccchHHHHHHHHHH
Confidence 8888877777777765545544
No 197
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.84 E-value=2.3e-05 Score=69.88 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=73.9
Q ss_pred ceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC---CCCCCccch
Q 024811 159 LVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETGRYDV 233 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~---~~~~~~yDl 233 (262)
-.+||||||.|.....+| +..+ .+.+||+....+..|-+++... ..+|+.+++.|+.++ -+++++.|-
T Consensus 50 pi~lEIGfG~G~~l~~~A-~~nP~~nfiGiEi~~~~v~~~l~k~~~~------~l~Nlri~~~DA~~~l~~~~~~~sl~~ 122 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMA-KKNPEKNFLGIEIRVPGVAKALKKIKEL------GLKNLRLLCGDAVEVLDYLIPDGSLDK 122 (227)
T ss_pred cEEEEECCCCCHHHHHHH-HHCCCCCEEEEEEehHHHHHHHHHHHHc------CCCcEEEEcCCHHHHHHhcCCCCCeeE
Confidence 369999999999999999 5554 5789999999999999988653 233899999998764 234469999
Q ss_pred hhhhhHHh-----h----cCchhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIG-----H----LTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~-----h----ltD~el~~~l~~~~~~LkPG 262 (262)
|+.+++=- | ++.+ .|++.+.+.|+||
T Consensus 123 I~i~FPDPWpKkRH~KRRl~~~---~fl~~~a~~Lk~g 157 (227)
T COG0220 123 IYINFPDPWPKKRHHKRRLTQP---EFLKLYARKLKPG 157 (227)
T ss_pred EEEECCCCCCCccccccccCCH---HHHHHHHHHccCC
Confidence 99988632 2 3333 5999999999997
No 198
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.80 E-value=3.7e-05 Score=69.34 Aligned_cols=96 Identities=18% Similarity=0.203 Sum_probs=68.2
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCC--CCCC-CC
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPE-TG 229 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~--~~~~-~~ 229 (262)
+.++.+|||.|.|+|.+|..|+...+ .+|.-.|..+++.+.|++++.... ...++++.+.|+.+ |..+ ..
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g-----l~~~v~~~~~Dv~~~g~~~~~~~ 112 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG-----LDDNVTVHHRDVCEEGFDEELES 112 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-----CCTTEEEEES-GGCG--STT-TT
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC-----CCCCceeEecceecccccccccC
Confidence 56799999999999999999994444 379999999999999999997642 23589999999854 3111 25
Q ss_pred ccchhhhhhHHhhcCchhHHHHHHHHHhhc-cCC
Q 024811 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVNH-SQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el~~~l~~~~~~L-kPG 262 (262)
.+|+|+. =|++|- .++..+.++| +||
T Consensus 113 ~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~g 139 (247)
T PF08704_consen 113 DFDAVFL-----DLPDPW--EAIPHAKRALKKPG 139 (247)
T ss_dssp SEEEEEE-----ESSSGG--GGHHHHHHHE-EEE
T ss_pred cccEEEE-----eCCCHH--HHHHHHHHHHhcCC
Confidence 7898654 466776 7777788888 664
No 199
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=4.1e-05 Score=74.26 Aligned_cols=75 Identities=24% Similarity=0.236 Sum_probs=63.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC---Cccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~---~~yDl 233 (262)
++.++||+=||.|+++..|+ +.+.+|.+||.++.+++.|+++++.. ...|+.|+.++.+++.+.. ..+|+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n------~i~N~~f~~~~ae~~~~~~~~~~~~d~ 365 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAAN------GIDNVEFIAGDAEEFTPAWWEGYKPDV 365 (432)
T ss_pred CCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHc------CCCcEEEEeCCHHHHhhhccccCCCCE
Confidence 46799999999999999999 77899999999999999999998642 3457999999999986542 36788
Q ss_pred hhhhh
Q 024811 234 IWVQW 238 (262)
Q Consensus 234 I~s~~ 238 (262)
|+...
T Consensus 366 VvvDP 370 (432)
T COG2265 366 VVVDP 370 (432)
T ss_pred EEECC
Confidence 88754
No 200
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.74 E-value=1.5e-05 Score=71.59 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=71.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCC-ccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETG-RYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~-~yD 232 (262)
.+.+||=||.|.|..+..++ ++. .+|++||+++..++.|++.+...... ...++++++..|...|-. ... +||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell-~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELL-KHPPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHT-TSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CcCceEEEcCCChhhhhhhh-hcCCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHhccCCccc
Confidence 57899999999999999999 543 68999999999999999987542110 124688999999876621 224 899
Q ss_pred hhhhhhHHhhcCchh--HHHHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDD--FVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~e--l~~~l~~~~~~LkPG 262 (262)
+|++-..-..-+... -.+|++.|++.|+||
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~ 184 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPD 184 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCC
Confidence 999743211111111 126999999999985
No 201
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.73 E-value=8.6e-05 Score=67.76 Aligned_cols=105 Identities=16% Similarity=0.222 Sum_probs=77.4
Q ss_pred CCceeeEeeccccH----HHHHHHHhcC-------CcEEEEeCCHHHHHHHHhhccc----------c-ccc----C---
Q 024811 157 QHLVALDCGSGIGR----ITKNLLIRYF-------NEVDLLEPVSHFLDAARESLAP----------E-NHM----A--- 207 (262)
Q Consensus 157 ~~~~VLDlGcGtG~----lt~~La~~~~-------~~V~~VD~s~~mld~Ar~~l~~----------a-~~~----~--- 207 (262)
...+|.-.||+||- ++..|. +.+ -+|+++|+|..+|+.|+.-+=. . ..+ .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~-e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~ 174 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLL-EALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDG 174 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHH-HHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCC
Confidence 36799999999995 444444 332 2689999999999999753211 0 000 0
Q ss_pred -----CCCCcceEEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 208 -----PDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 208 -----~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+..-..+.|...|+.+-.+..+.||+|+|.+|+-|++.+...+++.++...|+||
T Consensus 175 ~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~g 234 (268)
T COG1352 175 SYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPG 234 (268)
T ss_pred cEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCC
Confidence 1112467888888877653347899999999999999998889999999999997
No 202
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.73 E-value=9.2e-05 Score=64.35 Aligned_cols=94 Identities=15% Similarity=0.040 Sum_probs=76.0
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
.+.+.|+|+|+|-++.-.+ +...+|.+||.+|.-.++|++|+..- ...++..+.+|..+..+ ...|+|+|-
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa-~~A~rViAiE~dPk~a~~a~eN~~v~------g~~n~evv~gDA~~y~f--e~ADvvicE 103 (252)
T COG4076 33 EDTFADLGAGSGILSVVAA-HAAERVIAIEKDPKRARLAEENLHVP------GDVNWEVVVGDARDYDF--ENADVVICE 103 (252)
T ss_pred hhceeeccCCcchHHHHHH-hhhceEEEEecCcHHHHHhhhcCCCC------CCcceEEEecccccccc--cccceeHHH
Confidence 4679999999999999888 77899999999999999999997431 34688999999999887 479999998
Q ss_pred hHHhhcCchhHHHHHHHHHhhcc
Q 024811 238 WCIGHLTDDDFVSFFKRAKVNHS 260 (262)
Q Consensus 238 ~vl~hltD~el~~~l~~~~~~Lk 260 (262)
..=.-|-+++.+.+++.+...|+
T Consensus 104 mlDTaLi~E~qVpV~n~vleFLr 126 (252)
T COG4076 104 MLDTALIEEKQVPVINAVLEFLR 126 (252)
T ss_pred HhhHHhhcccccHHHHHHHHHhh
Confidence 76555566666667776666554
No 203
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.70 E-value=8.5e-05 Score=60.01 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=36.4
Q ss_pred eeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcc
Q 024811 160 VALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLA 201 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~ 201 (262)
.+||+|||+|..+..++ +.++ +|.++||++.+.+.+++++.
T Consensus 1 ~vlDiGa~~G~~~~~~~-~~~~~~~v~~~E~~~~~~~~l~~~~~ 43 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFA-RKGAEGRVIAFEPLPDAYEILEENVK 43 (143)
T ss_pred CEEEccCCccHHHHHHH-HhCCCCEEEEEecCHHHHHHHHHHHH
Confidence 38999999999999999 5555 59999999999999999875
No 204
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.65 E-value=1.4e-05 Score=70.21 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=48.7
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
+...|.|+|||-+.++..+- . ...|.-.|+.+. +-.+..+|+...+.++++.|++|+
T Consensus 72 ~~~viaD~GCGdA~la~~~~-~-~~~V~SfDLva~---------------------n~~Vtacdia~vPL~~~svDv~Vf 128 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVP-N-KHKVHSFDLVAP---------------------NPRVTACDIANVPLEDESVDVAVF 128 (219)
T ss_dssp TTS-EEEES-TT-HHHHH---S----EEEEESS-S---------------------STTEEES-TTS-S--TT-EEEEEE
T ss_pred CCEEEEECCCchHHHHHhcc-c-CceEEEeeccCC---------------------CCCEEEecCccCcCCCCceeEEEE
Confidence 45789999999999997765 2 235766665321 224667999998888899999999
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.+|+-.. +..|++++.|+||||
T Consensus 129 cLSLMGTn---~~~fi~EA~RvLK~~ 151 (219)
T PF05148_consen 129 CLSLMGTN---WPDFIREANRVLKPG 151 (219)
T ss_dssp ES---SS----HHHHHHHHHHHEEEE
T ss_pred EhhhhCCC---cHHHHHHHHheeccC
Confidence 98876654 447999999999986
No 205
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.64 E-value=0.00022 Score=61.60 Aligned_cols=90 Identities=19% Similarity=0.108 Sum_probs=62.5
Q ss_pred eeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhh
Q 024811 160 VALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~ 238 (262)
+++|+|+|-|--+.+|+.-. -.+++++|.+.+=+...+.-+... ...|+.+++..+++. ....+||+|+|.-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L------~L~nv~v~~~R~E~~-~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL------GLSNVEVINGRAEEP-EYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH------T-SSEEEEES-HHHT-TTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh------CCCCEEEEEeeeccc-ccCCCccEEEeeh
Confidence 79999999999999999443 236899999998777666654432 245899999999982 2347899999975
Q ss_pred HHhhcCchhHHHHHHHHHhhccCC
Q 024811 239 CIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 239 vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+ .+.. .++.-+...|+||
T Consensus 124 v----~~l~--~l~~~~~~~l~~~ 141 (184)
T PF02527_consen 124 V----APLD--KLLELARPLLKPG 141 (184)
T ss_dssp S----SSHH--HHHHHHGGGEEEE
T ss_pred h----cCHH--HHHHHHHHhcCCC
Confidence 3 2222 5666666666553
No 206
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.60 E-value=0.00033 Score=68.66 Aligned_cols=101 Identities=10% Similarity=0.008 Sum_probs=73.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-CCCccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYD 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-~~~~yD 232 (262)
.++.+|||++||+|.=|..|+.... ..|.++|+++.-++..++++... ...++.+.+.|...+.. ..+.||
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~------G~~nv~v~~~D~~~~~~~~~~~fD 185 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC------GVSNVALTHFDGRVFGAALPETFD 185 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCchhhhhhhchhhcC
Confidence 4678999999999999999995442 36899999999999999999764 33567788888776531 125799
Q ss_pred hhh----hhh--HHhh-------cCchhH-------HHHHHHHHhhccCC
Q 024811 233 VIW----VQW--CIGH-------LTDDDF-------VSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~----s~~--vl~h-------ltD~el-------~~~l~~~~~~LkPG 262 (262)
.|+ |+. ++.+ .+..++ .++|..+.++|+||
T Consensus 186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpG 235 (470)
T PRK11933 186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPG 235 (470)
T ss_pred eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999 542 1221 121111 46899999999997
No 207
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.60 E-value=3.5e-05 Score=66.35 Aligned_cols=98 Identities=12% Similarity=0.086 Sum_probs=64.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC----CCCccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~----~~~~yD 232 (262)
.+.++||+=||+|.++...+.+...+|+.||.++..+...++|++.... ...+..++.|...+-. ...+||
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----EDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----CcceeeeccCHHHHHHhhcccCCCce
Confidence 4789999999999999999977778999999999999999999875421 1257888888654321 236899
Q ss_pred hhhhhhHHhhcCchhHHHHHHHHH--hhccC
Q 024811 233 VIWVQWCIGHLTDDDFVSFFKRAK--VNHSQ 261 (262)
Q Consensus 233 lI~s~~vl~hltD~el~~~l~~~~--~~LkP 261 (262)
+|++-.+...-.. ..+++..+. .+|++
T Consensus 117 iIflDPPY~~~~~--~~~~l~~l~~~~~l~~ 145 (183)
T PF03602_consen 117 IIFLDPPYAKGLY--YEELLELLAENNLLNE 145 (183)
T ss_dssp EEEE--STTSCHH--HHHHHHHHHHTTSEEE
T ss_pred EEEECCCcccchH--HHHHHHHHHHCCCCCC
Confidence 9999876433221 124555444 44443
No 208
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.52 E-value=0.00016 Score=74.05 Aligned_cols=99 Identities=11% Similarity=0.089 Sum_probs=71.1
Q ss_pred CCceeeEeeccccHHHHHHHHhc-------------------------------------------CCcEEEEeCCHHHH
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-------------------------------------------FNEVDLLEPVSHFL 193 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-------------------------------------------~~~V~~VD~s~~ml 193 (262)
++..++|-.||+|.+.+..+... ...+.++|.++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46789999999999998877310 11589999999999
Q ss_pred HHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC--CccchhhhhhHHhhc-Cc-hhHHHHHHHHHhhcc
Q 024811 194 DAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--GRYDVIWVQWCIGHL-TD-DDFVSFFKRAKVNHS 260 (262)
Q Consensus 194 d~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~--~~yDlI~s~~vl~hl-tD-~el~~~l~~~~~~Lk 260 (262)
+.|++|+..+. ....+.|.++|+.++.+.. ++||+|++|.+...- .+ .++..+.+.+.+.|+
T Consensus 270 ~~A~~N~~~~g-----~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 270 QAARKNARRAG-----VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred HHHHHHHHHcC-----CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 99999987642 2235889999998875432 469999999875433 22 344555555544443
No 209
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.48 E-value=0.00023 Score=68.17 Aligned_cols=101 Identities=14% Similarity=0.055 Sum_probs=76.6
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC----CCCccch
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYDV 233 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~----~~~~yDl 233 (262)
+.+|||+=|=||..|.+.+.....+|+.||.|...|+.|++|+..-. .......|+++|+.++-. ...+||+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg----~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNG----LDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcC----CCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 77999999999999999994444599999999999999999986421 123457899999988732 2248999
Q ss_pred hhhhhH-HhhcCc------hhHHHHHHHHHhhccCC
Q 024811 234 IWVQWC-IGHLTD------DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~v-l~hltD------~el~~~l~~~~~~LkPG 262 (262)
|+.-.+ +..-.+ .+...++..+.++|+||
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pg 329 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPG 329 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCC
Confidence 998753 322222 24557888899999986
No 210
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.44 E-value=0.00012 Score=64.57 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=58.8
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC---CCCccchh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRYDVI 234 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~---~~~~yDlI 234 (262)
..++|||||=.......-. ..+. |+.||+.+. .-.+...|+.+.+. +.++||+|
T Consensus 52 ~lrlLEVGals~~N~~s~~-~~fd-vt~IDLns~---------------------~~~I~qqDFm~rplp~~~~e~FdvI 108 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTS-GWFD-VTRIDLNSQ---------------------HPGILQQDFMERPLPKNESEKFDVI 108 (219)
T ss_pred cceEEeecccCCCCccccc-Ccee-eEEeecCCC---------------------CCCceeeccccCCCCCCcccceeEE
Confidence 4799999987554333322 3344 888887541 12355666666643 24799999
Q ss_pred hhhhHHhhcCchh-HHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDD-FVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~e-l~~~l~~~~~~LkPG 262 (262)
.++.||.+++++. -.++++++.+.|+|+
T Consensus 109 s~SLVLNfVP~p~~RG~Ml~r~~~fL~~~ 137 (219)
T PF11968_consen 109 SLSLVLNFVPDPKQRGEMLRRAHKFLKPP 137 (219)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999975 457999999999984
No 211
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.41 E-value=0.00011 Score=69.78 Aligned_cols=100 Identities=15% Similarity=0.106 Sum_probs=81.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.++..++|+|||.|..+..+..-...++++++.++--+..+......+. ....-++...|+..-+++++.||.+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~-----l~~k~~~~~~~~~~~~fedn~fd~v~ 183 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY-----LDNKCNFVVADFGKMPFEDNTFDGVR 183 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH-----hhhhcceehhhhhcCCCCccccCcEE
Confidence 3466899999999999999995455788999988888777766543321 12234557788888778889999999
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+..+..|.++.+ .+++++.++++||
T Consensus 184 ~ld~~~~~~~~~--~~y~Ei~rv~kpG 208 (364)
T KOG1269|consen 184 FLEVVCHAPDLE--KVYAEIYRVLKPG 208 (364)
T ss_pred EEeecccCCcHH--HHHHHHhcccCCC
Confidence 999999999998 9999999999997
No 212
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.39 E-value=0.00015 Score=66.42 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=67.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcce-EEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT-NFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v-~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.+..++|+|||-|-.+.. .....+.+.|.+...+..|+.. +. ....+|+...++...+||.++
T Consensus 45 ~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~-------------~~~~~~~ad~l~~p~~~~s~d~~l 108 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS-------------GGDNVCRADALKLPFREESFDAAL 108 (293)
T ss_pred CcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC-------------CCceeehhhhhcCCCCCCccccch
Confidence 367899999999975331 1112355666666666666553 22 466788888877778999999
Q ss_pred hhhHHhhcCchhHH-HHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFV-SFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~-~~l~~~~~~LkPG 262 (262)
+..++||+...... ++++++.+.|+||
T Consensus 109 siavihhlsT~~RR~~~l~e~~r~lrpg 136 (293)
T KOG1331|consen 109 SIAVIHHLSTRERRERALEELLRVLRPG 136 (293)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcCC
Confidence 99999999887654 6999999999997
No 213
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.37 E-value=0.00011 Score=71.74 Aligned_cols=106 Identities=13% Similarity=0.078 Sum_probs=64.6
Q ss_pred HHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEE-----eCCHHHHHHHHhhcccccccCCCCCc
Q 024811 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLL-----EPVSHFLDAARESLAPENHMAPDMHK 212 (262)
Q Consensus 138 s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~V-----D~s~~mld~Ar~~l~~a~~~~~~~~~ 212 (262)
...+|..+++.... ...-..+||+|||+|.++..|+ .+ +|+.+ |..+..++.|-++- .+
T Consensus 101 Yid~i~~~~~~~~~---~g~iR~~LDvGcG~aSF~a~l~-~r--~V~t~s~a~~d~~~~qvqfaleRG----------vp 164 (506)
T PF03141_consen 101 YIDQIAEMIPLIKW---GGGIRTALDVGCGVASFGAYLL-ER--NVTTMSFAPNDEHEAQVQFALERG----------VP 164 (506)
T ss_pred HHHHHHHHhhcccc---CCceEEEEeccceeehhHHHHh-hC--CceEEEcccccCCchhhhhhhhcC----------cc
Confidence 34456666652111 1123478999999999999999 43 24433 33333444444331 11
Q ss_pred ceEEEEcCCCCCCCCCCccchhhhhhHHhhcC-chhHHHHHHHHHhhccCC
Q 024811 213 ATNFFCVPLQDFTPETGRYDVIWVQWCIGHLT-DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 213 ~v~f~~~d~~~~~~~~~~yDlI~s~~vl~hlt-D~el~~~l~~~~~~LkPG 262 (262)
.-+-...-+.++++.+.||+|=|+-|+.... +.. -+|-++.|+|+||
T Consensus 165 -a~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g--~~l~evdRvLRpG 212 (506)
T PF03141_consen 165 -AMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDG--FLLFEVDRVLRPG 212 (506)
T ss_pred -hhhhhhccccccCCccchhhhhcccccccchhccc--ceeehhhhhhccC
Confidence 1111222356677778999999998765444 444 6889999999997
No 214
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.37 E-value=0.0017 Score=57.43 Aligned_cols=74 Identities=26% Similarity=0.209 Sum_probs=55.0
Q ss_pred CceeeEeeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCc-cchhh
Q 024811 158 HLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR-YDVIW 235 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~-~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~-yDlI~ 235 (262)
+.+++|||+|.|--+.+|+.- .-.+|+++|...+=+.-.++-.... ...|+.++++.++++.... + ||+|.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL------~L~nv~i~~~RaE~~~~~~-~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL------GLENVEIVHGRAEEFGQEK-KQYDVVT 140 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh------CCCCeEEehhhHhhccccc-ccCcEEE
Confidence 579999999999999998822 1236999999987555444433221 2458999999999997642 4 99998
Q ss_pred hhh
Q 024811 236 VQW 238 (262)
Q Consensus 236 s~~ 238 (262)
|.-
T Consensus 141 sRA 143 (215)
T COG0357 141 SRA 143 (215)
T ss_pred eeh
Confidence 864
No 215
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.35 E-value=0.00051 Score=64.69 Aligned_cols=71 Identities=17% Similarity=0.109 Sum_probs=52.3
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
..++.++||+||+||..|..|+ +.+..|++||..+ |-.. +. ..+++..+..|...+.|..+.+|.|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~-~rG~~V~AVD~g~-l~~~----L~--------~~~~V~h~~~d~fr~~p~~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLV-RRGMFVTAVDNGP-MAQS----LM--------DTGQVEHLRADGFKFRPPRKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHH-HcCCEEEEEechh-cCHh----hh--------CCCCEEEEeccCcccCCCCCCCCEE
Confidence 3468899999999999999999 6677999999543 2221 11 1347888888887776645688998
Q ss_pred hhhhH
Q 024811 235 WVQWC 239 (262)
Q Consensus 235 ~s~~v 239 (262)
+|-.+
T Consensus 275 VcDmv 279 (357)
T PRK11760 275 VCDMV 279 (357)
T ss_pred EEecc
Confidence 88643
No 216
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.27 E-value=0.00035 Score=69.04 Aligned_cols=98 Identities=12% Similarity=-0.042 Sum_probs=71.4
Q ss_pred CceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccch
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yDl 233 (262)
.-.+||||||.|..+..++ ...+ .+.+||.+...+..+-.++... ...|+.+++.|+..+. .++++.|.
T Consensus 348 ~p~~lEIG~G~G~~~~~~A-~~~p~~~~iGiE~~~~~~~~~~~~~~~~------~l~N~~~~~~~~~~~~~~~~~~sv~~ 420 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQA-KMNPDALFIGVEVYLNGVANVLKLAGEQ------NITNFLLFPNNLDLILNDLPNNSLDG 420 (506)
T ss_pred CceEEEECCCchHHHHHHH-HhCCCCCEEEEEeeHHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHhcCcccccE
Confidence 4579999999999999999 4444 6899999999998887775432 3468888888774321 23468999
Q ss_pred hhhhhHHhhc-----Cc-hhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHL-----TD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hl-----tD-~el~~~l~~~~~~LkPG 262 (262)
|+.+++=-|. .. ---..|++.+.+.|+||
T Consensus 421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~g 455 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDN 455 (506)
T ss_pred EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCC
Confidence 9998863222 11 11125999999999997
No 217
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.27 E-value=0.00021 Score=65.82 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=77.3
Q ss_pred cchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCc
Q 024811 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212 (262)
Q Consensus 133 ~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~ 212 (262)
.|....+.++.... .+.+|||+=|=||.++...+.....+|+.||.|..+++.+++|+..- . -...
T Consensus 109 lDqR~nR~~v~~~~----------~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lN-g---~~~~ 174 (286)
T PF10672_consen 109 LDQRENRKWVRKYA----------KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALN-G---LDLD 174 (286)
T ss_dssp GGGHHHHHHHHHHC----------TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHT-T----CCT
T ss_pred HHHHhhHHHHHHHc----------CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-C---CCcc
Confidence 35556666676653 36799999999999999988444468999999999999999997541 1 1124
Q ss_pred ceEEEEcCCCCCCC---CCCccchhhhhhH-Hhh--cC-chhHHHHHHHHHhhccCC
Q 024811 213 ATNFFCVPLQDFTP---ETGRYDVIWVQWC-IGH--LT-DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 213 ~v~f~~~d~~~~~~---~~~~yDlI~s~~v-l~h--lt-D~el~~~l~~~~~~LkPG 262 (262)
.++|+..|+.++-. ..++||+||+-.+ +.. +. ..+...++..+.++|+||
T Consensus 175 ~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~g 231 (286)
T PF10672_consen 175 RHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPG 231 (286)
T ss_dssp CEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEE
T ss_pred ceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 68999999877521 1368999998653 211 00 134556788888888875
No 218
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.001 Score=57.68 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=64.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC--CCC-CCccch
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPE-TGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~--~~~-~~~yDl 233 (262)
.+.++||+=+|+|.++.+.+.+....|++||.+...+.+.++|++..+ ...+..++..|...+ ... .++||+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~-----~~~~~~~~~~da~~~L~~~~~~~~FDl 117 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALG-----LEGEARVLRNDALRALKQLGTREPFDL 117 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-----CccceEEEeecHHHHHHhcCCCCcccE
Confidence 478999999999999999997778899999999999999999987642 124677888887754 122 235999
Q ss_pred hhhhhHHh
Q 024811 234 IWVQWCIG 241 (262)
Q Consensus 234 I~s~~vl~ 241 (262)
|+.-.+++
T Consensus 118 VflDPPy~ 125 (187)
T COG0742 118 VFLDPPYA 125 (187)
T ss_pred EEeCCCCc
Confidence 99988776
No 219
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.22 E-value=0.00061 Score=62.54 Aligned_cols=112 Identities=15% Similarity=0.057 Sum_probs=68.5
Q ss_pred HHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHh--------cCCcEEEEeCCHHHHHHHHhhcccccccCCCCC
Q 024811 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR--------YFNEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (262)
Q Consensus 140 ~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~--------~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~ 211 (262)
.++..++. ..++.+|+|-.||+|.+...+... ...++.++|.++.++..|+-++..... ..
T Consensus 36 ~l~~~~~~-------~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~----~~ 104 (311)
T PF02384_consen 36 DLMVKLLN-------PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI----DN 104 (311)
T ss_dssp HHHHHHHT-------T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH----HC
T ss_pred HHHHhhhh-------ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc----cc
Confidence 45556553 235678999999999998888742 245789999999999999877643210 11
Q ss_pred cceEEEEcCCCCCCCC--CCccchhhhhhHHhhc--Cchh----------------H-HHHHHHHHhhccCC
Q 024811 212 KATNFFCVPLQDFTPE--TGRYDVIWVQWCIGHL--TDDD----------------F-VSFFKRAKVNHSQT 262 (262)
Q Consensus 212 ~~v~f~~~d~~~~~~~--~~~yDlI~s~~vl~hl--tD~e----------------l-~~~l~~~~~~LkPG 262 (262)
....+.+.|....+.. ...||+|+++.++.-. .+.+ . ..|+..+...|++|
T Consensus 105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~ 176 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPG 176 (311)
T ss_dssp BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEE
T ss_pred ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccc
Confidence 2345778886554332 3689999999876544 1111 0 13778888888763
No 220
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.20 E-value=0.00026 Score=63.44 Aligned_cols=102 Identities=13% Similarity=0.030 Sum_probs=75.8
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHhhcccccccCC-CCCcceEEEEcCCCCCC--CCCCc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAP-DMHKATNFFCVPLQDFT--PETGR 230 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~-~V~~VD~s~~mld~Ar~~l~~a~~~~~-~~~~~v~f~~~d~~~~~--~~~~~ 230 (262)
...+.+|||...|-|+.+...+ +.+. +|.-||-+|..++.|.-|= ++. -....+.++.+|..++- +++.+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~-~rGA~~VitvEkdp~VLeLa~lNP-----wSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEAL-ERGAIHVITVEKDPNVLELAKLNP-----WSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred cccCCEeeeeccCccHHHHHHH-HcCCcEEEEEeeCCCeEEeeccCC-----CCccccccccEEecccHHHHHhcCCccc
Confidence 3458899999999999999999 5555 8999999999998887652 111 11236789999987762 34578
Q ss_pred cchhhhhhH-HhhcCchhHHHHHHHHHhhccCC
Q 024811 231 YDVIWVQWC-IGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 231 yDlI~s~~v-l~hltD~el~~~l~~~~~~LkPG 262 (262)
||+|+--.. |.+.+.-=-.+|.+++.++|+||
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrg 238 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRG 238 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcC
Confidence 999998654 55555321127999999999997
No 221
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.00061 Score=66.79 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=54.9
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~ 224 (262)
+++.+..+||+-||||.++..++ +.+..|.+||.|+..++-|+.+... .+..|.+|+++-.++.
T Consensus 380 ~l~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~------NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 380 GLPADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQI------NGISNATFIVGQAEDL 443 (534)
T ss_pred CCCCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchh------cCccceeeeecchhhc
Confidence 34556789999999999999999 8889999999999999999998753 3567999999966664
No 222
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.16 E-value=0.00064 Score=67.24 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=53.9
Q ss_pred CceeeEeeccccHHHHHHHHhcC---------CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC----
Q 024811 158 HLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---- 224 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~---------~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~---- 224 (262)
..+|||.|||+|.+...++.... .++.++|.++..+..++.++..... ..+++.+.|....
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------~~~~i~~~d~l~~~~~~ 105 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------LEINVINFNSLSYVLLN 105 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------CCceeeecccccccccc
Confidence 56899999999999999984431 3678999999999999998754310 1233343332221
Q ss_pred -CCCCCccchhhhhhHHh
Q 024811 225 -TPETGRYDVIWVQWCIG 241 (262)
Q Consensus 225 -~~~~~~yDlI~s~~vl~ 241 (262)
....+.||+|++|.+..
T Consensus 106 ~~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 106 IESYLDLFDIVITNPPYG 123 (524)
T ss_pred cccccCcccEEEeCCCcc
Confidence 11125899999998654
No 223
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.13 E-value=0.00055 Score=65.29 Aligned_cols=91 Identities=10% Similarity=0.001 Sum_probs=67.2
Q ss_pred ceeeEeeccccHHHHHHHHh--cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-CCccchhh
Q 024811 159 LVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~--~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~yDlI~ 235 (262)
.+|||+-||+|..+..++.+ ....|.++|.++..++.+++|+..- ...++.+++.|...+-.. ..+||+|.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N------~~~~~~v~~~Da~~~l~~~~~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN------SVENIEVPNEDAANVLRYRNRKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCcEEEEchhHHHHHHHhCCCCCEEE
Confidence 58999999999999999965 3478999999999999999998542 123578888888776321 24799998
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
.-. + ..+ . .|+..+.+.+++
T Consensus 120 lDP-f-Gs~--~--~fld~al~~~~~ 139 (374)
T TIGR00308 120 IDP-F-GTP--A--PFVDSAIQASAE 139 (374)
T ss_pred eCC-C-CCc--H--HHHHHHHHhccc
Confidence 865 3 222 2 456666555554
No 224
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.12 E-value=0.0014 Score=61.71 Aligned_cols=101 Identities=15% Similarity=0.005 Sum_probs=78.9
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEc-CCCCCCCCCCccch
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRYDV 233 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~-d~~~~~~~~~~yDl 233 (262)
..++..|||==||||.+....- -.+.+|.+.|++..|++-|+.|+.... .....++.. |+...+....++|.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEag-l~G~~viG~Did~~mv~gak~Nl~~y~------i~~~~~~~~~Da~~lpl~~~~vda 267 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAG-LMGARVIGSDIDERMVRGAKINLEYYG------IEDYPVLKVLDATNLPLRDNSVDA 267 (347)
T ss_pred cccCCEeecCcCCccHHHHhhh-hcCceEeecchHHHHHhhhhhhhhhhC------cCceeEEEecccccCCCCCCccce
Confidence 4467899999999999999988 778899999999999999999997541 223444555 88888776557999
Q ss_pred hhhhhHHhhcC-------chhHHHHHHHHHhhccCC
Q 024811 234 IWVQWCIGHLT-------DDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 234 I~s~~vl~hlt-------D~el~~~l~~~~~~LkPG 262 (262)
|++-...+--+ +.-..++|..+.++|++|
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~g 303 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPG 303 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcC
Confidence 99987544433 222457999999999985
No 225
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0013 Score=62.72 Aligned_cols=84 Identities=13% Similarity=0.059 Sum_probs=67.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCC-----------------------------------------cEEEEeCCHHHHHH
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFN-----------------------------------------EVDLLEPVSHFLDA 195 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~-----------------------------------------~V~~VD~s~~mld~ 195 (262)
+...++|==||+|.+.+..+ ..+. .+.++|.++.|++.
T Consensus 191 ~~~pl~DPmCGSGTi~IEAA-l~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAA-LIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCccccCCCCccHHHHHHH-HhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 34589999999999999988 4443 26699999999999
Q ss_pred HHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhHH-hhcCch
Q 024811 196 ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCI-GHLTDD 246 (262)
Q Consensus 196 Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~vl-~hltD~ 246 (262)
|+.|+..|. ....+.|.++|+.++.++.+.||+||||.+- ..+.++
T Consensus 270 Ak~NA~~AG-----v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~ 316 (381)
T COG0116 270 AKANARAAG-----VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSE 316 (381)
T ss_pred HHHHHHhcC-----CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCCh
Confidence 999987763 3457999999999997654689999999763 334444
No 226
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.07 E-value=0.00045 Score=62.69 Aligned_cols=106 Identities=13% Similarity=0.166 Sum_probs=67.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccc--c-----------CCC----------CCcc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH--M-----------APD----------MHKA 213 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~--~-----------~~~----------~~~~ 213 (262)
++.++||||||+--.-..-+.+.+.++++.|.++.-++..++=+..... + +.. ....
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 4679999999995554333345688999999999999866553332100 0 000 0012
Q ss_pred eEEEEcCCCCCCCCC------CccchhhhhhHHhhcCc--hhHHHHHHHHHhhccCC
Q 024811 214 TNFFCVPLQDFTPET------GRYDVIWVQWCIGHLTD--DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 214 v~f~~~d~~~~~~~~------~~yDlI~s~~vl~hltD--~el~~~l~~~~~~LkPG 262 (262)
-.++.+|+...+|-. .+||+|++.+++.-... ++...+++++.++||||
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpG 192 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPG 192 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEE
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 236678887654321 25999999999988863 46888999999999997
No 227
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.03 E-value=0.0017 Score=61.17 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=63.5
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
.+.+|||.=||.|.+|.++++..-..|.++|++|..++.+++|+..- .....+..+++|..++.+..+.+|-|++
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN-----~v~~~v~~i~gD~rev~~~~~~aDrIim 262 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLN-----KVEGRVEPILGDAREVAPELGVADRIIM 262 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhc-----CccceeeEEeccHHHhhhccccCCEEEe
Confidence 48899999999999999999443444999999999999999998641 1223488999999998775468999998
Q ss_pred hhH
Q 024811 237 QWC 239 (262)
Q Consensus 237 ~~v 239 (262)
+.+
T Consensus 263 ~~p 265 (341)
T COG2520 263 GLP 265 (341)
T ss_pred CCC
Confidence 754
No 228
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.02 E-value=0.0014 Score=59.87 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=74.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccc---cccc-------------------C----C--
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP---ENHM-------------------A----P-- 208 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~---a~~~-------------------~----~-- 208 (262)
...+||==|||.||++-.++ ..+-.|++.|.|--|+=.+.-.+.. .... . .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia-~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIA-KLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHh-hccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 45799999999999999999 5577899999999998776653321 0000 0 0
Q ss_pred ------CCCcceEEEEcCCCCCCCCC---CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 209 ------DMHKATNFFCVPLQDFTPET---GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 209 ------~~~~~v~f~~~d~~~~~~~~---~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
....+.++..+|+.++-+++ +.||+|++.+.+--. +.+.++|..+.++||||
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPG 195 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccC
Confidence 11235666778887775544 699999988433322 34779999999999997
No 229
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.84 E-value=0.0013 Score=58.39 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=57.7
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC----CCCCccch
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDV 233 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~----~~~~~yDl 233 (262)
...|+|.-||.|..+..++ ..++.|..||.+|.-|..|+.|++... ...+++|+|+|+.+.. .....||+
T Consensus 95 ~~~iidaf~g~gGntiqfa-~~~~~VisIdiDPikIa~AkhNaeiYG-----I~~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFA-LQGPYVIAIDIDPVKIACARHNAEVYG-----VPDRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred cchhhhhhhcCCchHHHHH-HhCCeEEEEeccHHHHHHHhccceeec-----CCceeEEEechHHHHHHHHhhhhheeee
Confidence 4579999999999999999 668899999999999999999987542 2348999999997742 22234556
Q ss_pred hhhh
Q 024811 234 IWVQ 237 (262)
Q Consensus 234 I~s~ 237 (262)
|..+
T Consensus 169 vf~s 172 (263)
T KOG2730|consen 169 VFLS 172 (263)
T ss_pred eecC
Confidence 6544
No 230
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.79 E-value=0.0028 Score=60.15 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=73.6
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhccccccc-CCCCCcceEEEEcCCCCCCC-CCCccchh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~-~~~~~~~v~f~~~d~~~~~~-~~~~yDlI 234 (262)
-.+||=+|.|-|--.++|++.- +.+|+.||.+|+|++.++.+...-.-+ .+-..+++..+..|..+|-- ..+.||+|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 4689999999999999999443 679999999999999999554321111 12245788999999988832 23689999
Q ss_pred hhh------hHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQ------WCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~------~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
|.- .++..+-.. +|..-+++.|+++
T Consensus 370 IVDl~DP~tps~~rlYS~---eFY~ll~~~l~e~ 400 (508)
T COG4262 370 IVDLPDPSTPSIGRLYSV---EFYRLLSRHLAET 400 (508)
T ss_pred EEeCCCCCCcchhhhhhH---HHHHHHHHhcCcC
Confidence 864 345555544 4677777777763
No 231
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.002 Score=55.76 Aligned_cols=74 Identities=15% Similarity=0.018 Sum_probs=54.0
Q ss_pred CceeeEeeccccHHHHHHHHhcCCc--EEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~--V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
..-+||||||+|.++..|.+...++ +.++|++|.+++...+.+.. ...+++.++.|+.+--.+ ++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-------n~~~~~~V~tdl~~~l~~-~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-------NRVHIDVVRTDLLSGLRN-ESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh-------cCCccceeehhHHhhhcc-CCccEEE
Confidence 5679999999999999999665544 56789999999988776532 122467778887664322 6777777
Q ss_pred hhhH
Q 024811 236 VQWC 239 (262)
Q Consensus 236 s~~v 239 (262)
.|..
T Consensus 116 fNPP 119 (209)
T KOG3191|consen 116 FNPP 119 (209)
T ss_pred ECCC
Confidence 7654
No 232
>PRK10742 putative methyltransferase; Provisional
Probab=96.75 E-value=0.0015 Score=58.94 Aligned_cols=82 Identities=18% Similarity=0.094 Sum_probs=61.1
Q ss_pred eeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCC---CcceEEEEcCCCCCCC-CCCccchhh
Q 024811 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM---HKATNFFCVPLQDFTP-ETGRYDVIW 235 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~---~~~v~f~~~d~~~~~~-~~~~yDlI~ 235 (262)
+|||+=+|+|+.+..++ ..+.+|+++|-++......++++..+....... ..+++++.+|..++-. ....||+|+
T Consensus 91 ~VLD~TAGlG~Da~~la-s~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLA-SVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 89999999999999999 557679999999999999999887642211101 1468888888877632 124799999
Q ss_pred hhhHHhh
Q 024811 236 VQWCIGH 242 (262)
Q Consensus 236 s~~vl~h 242 (262)
.-..+.|
T Consensus 170 lDPMfp~ 176 (250)
T PRK10742 170 LDPMFPH 176 (250)
T ss_pred ECCCCCC
Confidence 7554433
No 233
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.33 E-value=0.0071 Score=55.49 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=59.7
Q ss_pred CceeeEeeccccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~---~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
+.+|+=||||+=-+|.-++.+. ...|+.+|.++..++.|++-+.... .....+.|+++|..+...+-..||+|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~----~L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL----GLSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH-------HH-SSEEEEES-GGGG-GG----SEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc----cccCCeEEEecchhccccccccCCEE
Confidence 4699999999888887777433 3468999999999999998775211 12357899999998765444689999
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+.... --++.+++.++|.++.+.++||
T Consensus 197 ~lAal-Vg~~~e~K~~Il~~l~~~m~~g 223 (276)
T PF03059_consen 197 FLAAL-VGMDAEPKEEILEHLAKHMAPG 223 (276)
T ss_dssp EE-TT--S----SHHHHHHHHHHHS-TT
T ss_pred EEhhh-cccccchHHHHHHHHHhhCCCC
Confidence 87643 3344445569999999999987
No 234
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.23 E-value=0.019 Score=51.23 Aligned_cols=106 Identities=18% Similarity=0.197 Sum_probs=72.5
Q ss_pred HHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHH--HhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEE
Q 024811 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL--IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (262)
Q Consensus 140 ~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La--~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~ 217 (262)
.|+..++... ...++||+|.=||.-+..++ .....+|..+|.++...+++.+..+.|. ....++|+
T Consensus 63 ~fl~~li~~~-------~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag-----v~~KI~~i 130 (237)
T KOG1663|consen 63 QFLQMLIRLL-------NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG-----VDHKITFI 130 (237)
T ss_pred HHHHHHHHHh-------CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc-----ccceeeee
Confidence 4666666522 46799999977776665555 2334579999999999999988876552 34578999
Q ss_pred EcCCCCCC------CCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 218 CVPLQDFT------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 218 ~~d~~~~~------~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.++..+-- .+.++||+++.- |..+. -..++.++.++|++|
T Consensus 131 ~g~a~esLd~l~~~~~~~tfDfaFvD----adK~n-Y~~y~e~~l~Llr~G 176 (237)
T KOG1663|consen 131 EGPALESLDELLADGESGTFDFAFVD----ADKDN-YSNYYERLLRLLRVG 176 (237)
T ss_pred ecchhhhHHHHHhcCCCCceeEEEEc----cchHH-HHHHHHHHHhhcccc
Confidence 88876531 124789998753 22111 125777888888887
No 235
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.13 E-value=0.021 Score=55.94 Aligned_cols=96 Identities=13% Similarity=0.211 Sum_probs=75.9
Q ss_pred eeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhhhH
Q 024811 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC 239 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~~v 239 (262)
++|-+|||--.++..+.+..+..|+-+|.|+..++.....-.. ...-..+...|+....+++++||+|+--..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-------~~~~~~~~~~d~~~l~fedESFdiVIdkGt 123 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-------ERPEMQMVEMDMDQLVFEDESFDIVIDKGT 123 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-------CCcceEEEEecchhccCCCcceeEEEecCc
Confidence 8999999999999999977889999999999999988876432 224578888999888888889999999888
Q ss_pred HhhcCc-hh--H-----HHHHHHHHhhccCC
Q 024811 240 IGHLTD-DD--F-----VSFFKRAKVNHSQT 262 (262)
Q Consensus 240 l~hltD-~e--l-----~~~l~~~~~~LkPG 262 (262)
++++-. ++ + -..+..+.++|+||
T Consensus 124 lDal~~de~a~~~~~~v~~~~~eVsrvl~~~ 154 (482)
T KOG2352|consen 124 LDALFEDEDALLNTAHVSNMLDEVSRVLAPG 154 (482)
T ss_pred cccccCCchhhhhhHHhhHHHhhHHHHhccC
Confidence 877743 22 1 12456677777765
No 236
>PHA01634 hypothetical protein
Probab=96.07 E-value=0.01 Score=48.74 Aligned_cols=45 Identities=18% Similarity=0.037 Sum_probs=41.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~ 201 (262)
.+.+|+|||+++|..+..++.+....|.++|+++...+..++++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhh
Confidence 366899999999999999997777899999999999999999875
No 237
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.05 E-value=0.0043 Score=52.47 Aligned_cols=38 Identities=24% Similarity=0.214 Sum_probs=35.2
Q ss_pred CCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 225 TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 225 ~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.+++++.|+|++..++.||+-+|...+++.|.+.||||
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~ 79 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPG 79 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcC
Confidence 45568999999999999999999999999999999997
No 238
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.79 E-value=0.023 Score=52.87 Aligned_cols=85 Identities=18% Similarity=0.215 Sum_probs=63.5
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-----CCC
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----ETG 229 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-----~~~ 229 (262)
.+++.++|+=+|-|.-|..++... ..+|.++|.++.+++.|++.+... ..++.++++++.++.. ...
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-------~~R~~~i~~nF~~l~~~l~~~~~~ 91 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-------EGRVVLIHDNFANFFEHLDELLVT 91 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-------CCcEEEEeCCHHHHHHHHHhcCCC
Confidence 356789999999999999999543 257999999999999999987532 2367888887776521 124
Q ss_pred ccchhhhhh--HHhhcCchh
Q 024811 230 RYDVIWVQW--CIGHLTDDD 247 (262)
Q Consensus 230 ~yDlI~s~~--vl~hltD~e 247 (262)
++|.|+... +.+++.+++
T Consensus 92 ~vDgIl~DLGvSS~Qld~~~ 111 (305)
T TIGR00006 92 KIDGILVDLGVSSPQLDDPE 111 (305)
T ss_pred cccEEEEeccCCHhhcCCCC
Confidence 678877654 457777765
No 239
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.66 E-value=0.013 Score=51.35 Aligned_cols=91 Identities=19% Similarity=0.139 Sum_probs=65.0
Q ss_pred CCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
-.+.+|||+|+|+|-.+..-++.....|...|..|-.++..+-|.+. ..-.+.|...|.-. ++ ..||+|+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~a-------ngv~i~~~~~d~~g-~~--~~~Dl~L 147 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAA-------NGVSILFTHADLIG-SP--PAFDLLL 147 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhh-------ccceeEEeeccccC-CC--cceeEEE
Confidence 35789999999999999998855567788889998888888877643 23467888888776 43 5799999
Q ss_pred hhhHHhhcCchh-HHHHHHHHH
Q 024811 236 VQWCIGHLTDDD-FVSFFKRAK 256 (262)
Q Consensus 236 s~~vl~hltD~e-l~~~l~~~~ 256 (262)
..-++.-=+-.+ +...+.+|.
T Consensus 148 agDlfy~~~~a~~l~~~~~~l~ 169 (218)
T COG3897 148 AGDLFYNHTEADRLIPWKDRLA 169 (218)
T ss_pred eeceecCchHHHHHHHHHHHHH
Confidence 987653333333 334444443
No 240
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.64 E-value=0.024 Score=49.84 Aligned_cols=91 Identities=11% Similarity=0.039 Sum_probs=60.6
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCc--EEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC------
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------ 226 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~--V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~------ 226 (262)
..++.+|+|+||-+|..++.+++....+ |.++|.-|- +...++.++++|+.+-+.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------------~~~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------------KPIPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------------ccCCCceEEeeeccCccHHHHHHH
Confidence 3457899999999999999999665554 788875331 123468899999876431
Q ss_pred --CCCccchhhhhh--------HHhhcCchhHH-HHHHHHHhhccCC
Q 024811 227 --ETGRYDVIWVQW--------CIGHLTDDDFV-SFFKRAKVNHSQT 262 (262)
Q Consensus 227 --~~~~yDlI~s~~--------vl~hltD~el~-~~l~~~~~~LkPG 262 (262)
...++|+|+|-. ...|.--..+. .++.-+...|+||
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~ 152 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPG 152 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCC
Confidence 123579999643 23444444444 3666667788775
No 241
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.60 E-value=0.022 Score=52.03 Aligned_cols=116 Identities=23% Similarity=0.254 Sum_probs=67.2
Q ss_pred hHHHHHHHHhhccCC-CccCCCCceeeEeecccc--HHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCC
Q 024811 137 GSEAFLQMLLSDRFP-NARNNQHLVALDCGSGIG--RITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (262)
Q Consensus 137 ~s~~fL~~ll~~~l~-~~~~~~~~~VLDlGcGtG--~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~ 211 (262)
..+.||..... ++. +.| -...||||||.= ..+-.++++.. .+|.-||..|-.+..++..+..- ..
T Consensus 51 ~nR~Fl~RaVr-~la~~~G---IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~------~~ 120 (267)
T PF04672_consen 51 ANRAFLRRAVR-YLAEEAG---IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN------PR 120 (267)
T ss_dssp HHHHHHHHHHH-HHHCTT------EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-------TT
T ss_pred HHHHHHHHHHH-HHHHhcC---cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC------CC
Confidence 45677765543 211 111 346999999964 24556664443 46888999999999999988641 11
Q ss_pred cceEEEEcCCCCCC-----CC-CCccc-----hhhhhhHHhhcCc-hhHHHHHHHHHhhccCC
Q 024811 212 KATNFFCVPLQDFT-----PE-TGRYD-----VIWVQWCIGHLTD-DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 212 ~~v~f~~~d~~~~~-----~~-~~~yD-----lI~s~~vl~hltD-~el~~~l~~~~~~LkPG 262 (262)
....++.+|+.+-. +. .+-+| .|+...+|||++| ++-..++..+...|.||
T Consensus 121 g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapG 183 (267)
T PF04672_consen 121 GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPG 183 (267)
T ss_dssp SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT
T ss_pred ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCC
Confidence 23789999998731 10 02233 4556678999998 56668999999999998
No 242
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.56 E-value=0.017 Score=51.86 Aligned_cols=73 Identities=23% Similarity=0.178 Sum_probs=50.6
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC--Cccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--GRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~--~~yDlI 234 (262)
++..+||+|+-||.+|.-++++....|.+||..-..+..-=++ ..+.+.+...++..+.++. +..|+|
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----------d~rV~~~E~tN~r~l~~~~~~~~~d~~ 148 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----------DPRVIVLERTNVRYLTPEDFTEKPDLI 148 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----------CCcEEEEecCChhhCCHHHcccCCCeE
Confidence 5779999999999999999965578999999877665543332 1234556666666665432 356777
Q ss_pred hhhhH
Q 024811 235 WVQWC 239 (262)
Q Consensus 235 ~s~~v 239 (262)
+|--+
T Consensus 149 v~DvS 153 (245)
T COG1189 149 VIDVS 153 (245)
T ss_pred EEEee
Confidence 76543
No 243
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.33 E-value=0.05 Score=48.51 Aligned_cols=92 Identities=13% Similarity=-0.032 Sum_probs=57.0
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcCC---cEEEEeCCHHH----HHHHHhhcccccccCCCCCcceEEEEcCCCCCC-
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHF----LDAARESLAPENHMAPDMHKATNFFCVPLQDFT- 225 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~~---~V~~VD~s~~m----ld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~- 225 (262)
.+.++.+||-+|+.+|..-.+++ .... .|.+||.|+.. ++.|+++ +|+--+-.|.....
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvS-DIvg~~G~VYaVEfs~r~~rdL~~la~~R------------~NIiPIl~DAr~P~~ 136 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVS-DIVGPDGVVYAVEFSPRSMRDLLNLAKKR------------PNIIPILEDARHPEK 136 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHH-HHHTTTSEEEEEESSHHHHHHHHHHHHHS------------TTEEEEES-TTSGGG
T ss_pred CCCCCCEEEEecccCCCccchhh-hccCCCCcEEEEEecchhHHHHHHHhccC------------CceeeeeccCCChHH
Confidence 35578899999999999999998 6644 79999999954 5555554 26666677765321
Q ss_pred --CCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 226 --PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 226 --~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.--+..|+|++--. +- .+..-++.++...||+|
T Consensus 137 Y~~lv~~VDvI~~DVa--Qp--~Qa~I~~~Na~~fLk~g 171 (229)
T PF01269_consen 137 YRMLVEMVDVIFQDVA--QP--DQARIAALNARHFLKPG 171 (229)
T ss_dssp GTTTS--EEEEEEE-S--ST--THHHHHHHHHHHHEEEE
T ss_pred hhcccccccEEEecCC--Ch--HHHHHHHHHHHhhccCC
Confidence 11246777765421 11 22235777887888765
No 244
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.25 E-value=0.033 Score=51.73 Aligned_cols=85 Identities=18% Similarity=0.189 Sum_probs=44.0
Q ss_pred CceeeEeeccccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcC----CCC-CCCCCCcc
Q 024811 158 HLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP----LQD-FTPETGRY 231 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~-~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d----~~~-~~~~~~~y 231 (262)
.-++||||+|.--+=-.|..+ +.=++.++|+++..++.|+++++.- +.....|.+.... +.. .....+.|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N----~~L~~~I~l~~~~~~~~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERN----PNLESRIELRKQKNPDNIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-----T-TTTEEEEE--ST-SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhc----cccccceEEEEcCCccccchhhhccccee
Confidence 568999999987543333322 3457899999999999999998641 1233456665432 211 11123589
Q ss_pred chhhhhhHHhhcCch
Q 024811 232 DVIWVQWCIGHLTDD 246 (262)
Q Consensus 232 DlI~s~~vl~hltD~ 246 (262)
|+.+|+..|+--.++
T Consensus 179 dftmCNPPFy~s~~e 193 (299)
T PF05971_consen 179 DFTMCNPPFYSSQEE 193 (299)
T ss_dssp EEEEE-----SS---
T ss_pred eEEecCCccccChhh
Confidence 999999997766554
No 245
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.01 E-value=0.028 Score=49.34 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=50.8
Q ss_pred eeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCC-CCCCCCCCccchhhhhh
Q 024811 161 ALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRYDVIWVQW 238 (262)
Q Consensus 161 VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~-~~~~~~~~~yDlI~s~~ 238 (262)
|.||||--|.+...|+++. .+.|.++|.++.-++.|++++.... ....+.+..+|- ..+.+. +..|+|+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~-----l~~~i~~rlgdGL~~l~~~-e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG-----LEDRIEVRLGDGLEVLKPG-EDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------TTTEEEEE-SGGGG--GG-G---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CcccEEEEECCcccccCCC-CCCCEEEEec
Confidence 6899999999999999543 3579999999999999999997642 235788999984 445442 2378888754
No 246
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=94.95 E-value=0.07 Score=51.98 Aligned_cols=84 Identities=18% Similarity=0.189 Sum_probs=57.1
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-CCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~yDlI~s 236 (262)
.-.|||||.|||-++...+......|+++|.-..|.+.|++-...- .-..+++.+...-.+..-. ..+-|.++.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kn-----g~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKN-----GMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcC-----CCccceeeeccccceeeecCcchhhhhhH
Confidence 3478999999999999999666788999999999999999865421 1224667765544444322 134676665
Q ss_pred hhHHhhcCch
Q 024811 237 QWCIGHLTDD 246 (262)
Q Consensus 237 ~~vl~hltD~ 246 (262)
--...-+.-+
T Consensus 142 e~fdtElige 151 (636)
T KOG1501|consen 142 EDFDTELIGE 151 (636)
T ss_pred hhhhhhhhcc
Confidence 5444444433
No 247
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=94.92 E-value=0.078 Score=47.32 Aligned_cols=97 Identities=14% Similarity=0.081 Sum_probs=70.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--CCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~~~~yDlI 234 (262)
++++||.+|=|-|.+.-.+-...-..=.+||+.|..+...+..--. ...++-++.+-+|+.-+ +++.||-|
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~-------ek~nViil~g~WeDvl~~L~d~~FDGI 173 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR-------EKENVIILEGRWEDVLNTLPDKHFDGI 173 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc-------cccceEEEecchHhhhccccccCccee
Confidence 5889999999999988877733333446899999999988886432 22467778888887633 34689998
Q ss_pred hhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+-----.|- +|+..|.+.+-++|||+
T Consensus 174 ~yDTy~e~y--Edl~~~hqh~~rLLkP~ 199 (271)
T KOG1709|consen 174 YYDTYSELY--EDLRHFHQHVVRLLKPE 199 (271)
T ss_pred EeechhhHH--HHHHHHHHHHhhhcCCC
Confidence 754222333 34668889999999996
No 248
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.90 E-value=0.034 Score=49.81 Aligned_cols=45 Identities=18% Similarity=0.308 Sum_probs=36.1
Q ss_pred CceeeEeeccccHHHHHHHHhcC---------CcEEEEeCCHHHHHHHHhhccc
Q 024811 158 HLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAP 202 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~---------~~V~~VD~s~~mld~Ar~~l~~ 202 (262)
+.+|+|+|+|.|.++..++.... .++.+||+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 47999999999999999994332 2699999999999999999865
No 249
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.70 E-value=0.08 Score=50.32 Aligned_cols=101 Identities=11% Similarity=-0.027 Sum_probs=61.9
Q ss_pred CceeeEeeccccHHHHHHHHhcCC---cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~---~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
+.+|||||.|+|...-.+- ..++ .+.++|.|+..-++-..-...... +.......-+..|-.+++.. ..|++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n-~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t--~~td~r~s~vt~dRl~lp~a-d~ytl~ 189 (484)
T COG5459 114 PQSILDVGAGPGTGLWALN-DIWPDLKSAVILEASPALRKVGDTLAENVST--EKTDWRASDVTEDRLSLPAA-DLYTLA 189 (484)
T ss_pred cchhhccCCCCchhhhhhc-ccCCCchhhhhhccCHHHHHHHHHHHhhccc--ccCCCCCCccchhccCCCcc-ceeehh
Confidence 5579999999998665554 5554 678889998776544332111000 00011112223344445443 589999
Q ss_pred hhhhHHhhcCch-hHHHHHHHHHhhccCC
Q 024811 235 WVQWCIGHLTDD-DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 235 ~s~~vl~hltD~-el~~~l~~~~~~LkPG 262 (262)
+...-|-|...+ ++...++++..++.||
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~g 218 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPG 218 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCC
Confidence 988766666554 5666899999998886
No 250
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=94.68 E-value=0.03 Score=47.24 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=28.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcC---CcEEEEeCCHH
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSH 191 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~---~~V~~VD~s~~ 191 (262)
.+.+|||+||+||..+..++ +.. ..|.+||+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~-~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLL-QRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHH-TSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeee-ecccccceEEEEecccc
Confidence 35899999999999999999 554 68999998876
No 251
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.65 E-value=0.025 Score=50.69 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=50.0
Q ss_pred ceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCC---CCCcceEEEEcCCCCCCC-CCCccchh
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAP---DMHKATNFFCVPLQDFTP-ETGRYDVI 234 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~---~~~~~v~f~~~d~~~~~~-~~~~yDlI 234 (262)
.+|||+=+|-|+-+.-++ ..+.+|+++|-||.+-...+.-+..+..... ....+++++.+|..++-. +..+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA-~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLA-SLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHH-HHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHH-ccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 389999999999999999 6788999999999887777665544322110 112578999999988632 24699999
Q ss_pred hhhhHHhh
Q 024811 235 WVQWCIGH 242 (262)
Q Consensus 235 ~s~~vl~h 242 (262)
+.-..|.|
T Consensus 156 Y~DPMFp~ 163 (234)
T PF04445_consen 156 YFDPMFPE 163 (234)
T ss_dssp EE--S---
T ss_pred EECCCCCC
Confidence 98665544
No 252
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.38 E-value=0.046 Score=49.78 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=52.6
Q ss_pred eeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC--CCccchhhhh
Q 024811 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQ 237 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~--~~~yDlI~s~ 237 (262)
+++|+-||.|.++.-|....+..|.++|.++..++..+.+... .+++.|+.++.+. ...+|+|+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~------------~~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN------------KLIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC------------CCccCccccCchhhcCCCCCEEEeC
Confidence 6999999999999999844466788899999999999998632 1566777777543 2579999976
Q ss_pred h
Q 024811 238 W 238 (262)
Q Consensus 238 ~ 238 (262)
.
T Consensus 70 p 70 (275)
T cd00315 70 F 70 (275)
T ss_pred C
Confidence 5
No 253
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=94.33 E-value=0.031 Score=54.49 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=58.7
Q ss_pred CCceeeEeeccccHHHHHHH--Hhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 157 QHLVALDCGSGIGRITKNLL--IRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La--~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
.+..++|+|.|.|.-.-.+. .+. -..+++||.|..|...+...+....+++.....++.|+..-+-- +....||+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi--~~~~~yDl 277 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPI--DIKNGYDL 277 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCC--Ccccceee
Confidence 36789999998887443333 122 35689999999999999998866433322222233443322221 12356999
Q ss_pred hhhhhHHhhcCchhH
Q 024811 234 IWVQWCIGHLTDDDF 248 (262)
Q Consensus 234 I~s~~vl~hltD~el 248 (262)
|++...++|+.....
T Consensus 278 vi~ah~l~~~~s~~~ 292 (491)
T KOG2539|consen 278 VICAHKLHELGSKFS 292 (491)
T ss_pred EEeeeeeeccCCchh
Confidence 999999999998653
No 254
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.25 E-value=0.077 Score=48.00 Aligned_cols=98 Identities=12% Similarity=0.006 Sum_probs=55.1
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC---CCCCCc-cch
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETGR-YDV 233 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~---~~~~~~-yDl 233 (262)
..+||++|+|+|-.+...+...+.+|.+.|....+......+-.. ..........+.....++.+. ..-... +|+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~-~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKN-NIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhh-hhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 457999999999888888866778888887766554433221100 000001111334443333332 211123 999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhh
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVN 258 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~ 258 (262)
|+++-|+.+-...+ .+++.++..
T Consensus 166 ilasDvvy~~~~~e--~Lv~tla~l 188 (248)
T KOG2793|consen 166 ILASDVVYEEESFE--GLVKTLAFL 188 (248)
T ss_pred EEEeeeeecCCcch--hHHHHHHHH
Confidence 99998877776654 344444333
No 255
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=94.05 E-value=0.18 Score=47.74 Aligned_cols=101 Identities=17% Similarity=0.091 Sum_probs=69.9
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCC----cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC---CC
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFN----EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PE 227 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~----~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~---~~ 227 (262)
..++.+|||+.+++|.=|.+++ +... .|+++|.|+.=+...++++... +..++..++.|...+. +.
T Consensus 154 p~pge~VlD~cAAPGGKTthla-~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl------G~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLA-ELMENEGAIVVAVDVSPKRLKRLRENLKRL------GVRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHH-HhcCCCCceEEEEcCCHHHHHHHHHHHHHc------CCCceEEEecccccccccccc
Confidence 4468999999999999999999 5543 3799999999999999999765 2345667777765432 22
Q ss_pred CCccchhhhh------hHH-------hhcCchh-------HHHHHHHHHhhccCC
Q 024811 228 TGRYDVIWVQ------WCI-------GHLTDDD-------FVSFFKRAKVNHSQT 262 (262)
Q Consensus 228 ~~~yDlI~s~------~vl-------~hltD~e-------l~~~l~~~~~~LkPG 262 (262)
.++||.|..- .++ ...+..+ ..++|..+.+.||||
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~G 281 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPG 281 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2258887742 122 2222221 125888888999887
No 256
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.03 E-value=0.098 Score=46.26 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=46.8
Q ss_pred CceeeEeeccccHHHHHHHHhcCCc--EEEEeCCHHHHHHHHhhccccccc-CCCCCcceEEEEcCCCCC
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDF 224 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~--V~~VD~s~~mld~Ar~~l~~a~~~-~~~~~~~v~f~~~d~~~~ 224 (262)
.-...|||||-|.+...|+ ..|+. +.+.|+--+.-|..++++...+.. +....+++.....+..-+
T Consensus 61 kvefaDIGCGyGGLlv~Ls-p~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~ 129 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLA-PKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF 129 (249)
T ss_pred cceEEeeccCccchhhhcc-ccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh
Confidence 3468999999999999999 77874 667788888888888888665433 222345566655554444
No 257
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.85 E-value=0.13 Score=46.49 Aligned_cols=81 Identities=14% Similarity=0.043 Sum_probs=57.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
.+.+|+|||||.=-++.+.. ... ..+.+.|++..+++....-+... ....++...|+..-.++ ..+|+.
T Consensus 105 ~p~sVlDigCGlNPlalp~~-~~~~~a~Y~a~DID~~~ve~l~~~l~~l-------~~~~~~~v~Dl~~~~~~-~~~Dla 175 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWM-PEAPGATYIAYDIDSQLVEFLNAFLAVL-------GVPHDARVRDLLSDPPK-EPADLA 175 (251)
T ss_dssp --SEEEEET-TTCHHHHHTT-TSSTT-EEEEEESBHHHHHHHHHHHHHT-------T-CEEEEEE-TTTSHTT-SEESEE
T ss_pred CCchhhhhhccCCceehhhc-ccCCCcEEEEEeCCHHHHHHHHHHHHhh-------CCCcceeEeeeeccCCC-CCcchh
Confidence 47899999999999999888 443 47899999999999998877542 34567777888776554 689998
Q ss_pred hhhhHHhhcCch
Q 024811 235 WVQWCIGHLTDD 246 (262)
Q Consensus 235 ~s~~vl~hltD~ 246 (262)
...=+++=+...
T Consensus 176 LllK~lp~le~q 187 (251)
T PF07091_consen 176 LLLKTLPCLERQ 187 (251)
T ss_dssp EEET-HHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 876555555443
No 258
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.39 E-value=0.12 Score=49.15 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=39.9
Q ss_pred CCCCceeeEeeccccHHHHHHHHhc---------CCcEEEEeCCHHHHHHHHhhccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRY---------FNEVDLLEPVSHFLDAARESLAP 202 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~---------~~~V~~VD~s~~mld~Ar~~l~~ 202 (262)
.+.+..++|+|+|.|.++..++... ..++.+||+|++....-++.++.
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 3346789999999999999999443 23789999999999999998865
No 259
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.35 E-value=0.2 Score=48.01 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=36.4
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~ 198 (262)
-..|+|+|+|.|.++..|...++..|.+||-|....+.|+.
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 45799999999999999998888899999999888877754
No 260
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.29 E-value=0.083 Score=44.58 Aligned_cols=81 Identities=20% Similarity=0.089 Sum_probs=57.4
Q ss_pred CCceeeEeeccccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
+.++.+|+|+|-||+-...+ +.+ -..+++|+++=.+..++-..-.+ ...+..+|...|+-.++.. .|..++
T Consensus 72 ~~GklvDlGSGDGRiVlaaa-r~g~~~a~GvELNpwLVaysrl~a~R~-----g~~k~trf~RkdlwK~dl~--dy~~vv 143 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAA-RCGLRPAVGVELNPWLVAYSRLHAWRA-----GCAKSTRFRRKDLWKVDLR--DYRNVV 143 (199)
T ss_pred CCCcEEeccCCCceeehhhh-hhCCCcCCceeccHHHHHHHHHHHHHH-----hcccchhhhhhhhhhcccc--ccceEE
Confidence 45789999999999998888 544 56789999999999988764322 1234678888888777654 466555
Q ss_pred hhhHHhhcCc
Q 024811 236 VQWCIGHLTD 245 (262)
Q Consensus 236 s~~vl~hltD 245 (262)
...+=.-++|
T Consensus 144 iFgaes~m~d 153 (199)
T KOG4058|consen 144 IFGAESVMPD 153 (199)
T ss_pred EeehHHHHhh
Confidence 5544333444
No 261
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.88 E-value=0.39 Score=42.80 Aligned_cols=76 Identities=14% Similarity=0.009 Sum_probs=56.3
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
+.++.||||=-|++...|.+.. ...+...|.++.-++.|.++++.. .....++..++|-...-.....+|+|+.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~-----~l~~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN-----NLSERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc-----CCcceEEEeccCCccccCccCCcCEEEE
Confidence 5569999999999999999553 457889999999999999998753 2334566666665332112247999887
Q ss_pred hh
Q 024811 237 QW 238 (262)
Q Consensus 237 ~~ 238 (262)
..
T Consensus 92 AG 93 (226)
T COG2384 92 AG 93 (226)
T ss_pred eC
Confidence 64
No 262
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=92.13 E-value=0.18 Score=46.22 Aligned_cols=75 Identities=16% Similarity=0.087 Sum_probs=55.3
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--CCCcc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRY 231 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~~~~y 231 (262)
.++.+|||+.||+|.=|..++.... ..|.+.|.++.-+...++++... +..++.....|...+.+ ....|
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~------g~~~v~~~~~D~~~~~~~~~~~~f 157 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL------GVFNVIVINADARKLDPKKPESKF 157 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT------T-SSEEEEESHHHHHHHHHHTTTE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc------CCceEEEEeecccccccccccccc
Confidence 3578999999999999999995544 47999999999999999988654 33466666666554421 11358
Q ss_pred chhhh
Q 024811 232 DVIWV 236 (262)
Q Consensus 232 DlI~s 236 (262)
|.|+.
T Consensus 158 d~Vlv 162 (283)
T PF01189_consen 158 DRVLV 162 (283)
T ss_dssp EEEEE
T ss_pred chhhc
Confidence 88775
No 263
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=92.03 E-value=0.29 Score=45.86 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=66.1
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccccc---c----------------------c------
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN---H----------------------M------ 206 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~---~----------------------~------ 206 (262)
..+||==|||.||++..|+ ..+..+.+-|.|--|+=++.=.+...+ + .
T Consensus 151 ki~iLvPGaGlGRLa~dla-~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLA-CLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHH-HhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 5689999999999999999 667778888999999876654431100 0 0
Q ss_pred -CCCCCcceEE--EEcCCCCCCCC---CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 207 -APDMHKATNF--FCVPLQDFTPE---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 207 -~~~~~~~v~f--~~~d~~~~~~~---~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
++.......| --+|+.+.-+. .+.||+|+.+|.+--.. .+..+|..+...|+||
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~--NileYi~tI~~iLk~G 289 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH--NILEYIDTIYKILKPG 289 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH--HHHHHHHHHHHhccCC
Confidence 0000011112 23565554332 24799999885433222 3558999999999997
No 264
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.50 E-value=0.066 Score=45.78 Aligned_cols=122 Identities=14% Similarity=0.066 Sum_probs=67.7
Q ss_pred cccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCC
Q 024811 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAP 208 (262)
Q Consensus 131 s~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~ 208 (262)
-++-+-.++..|...+.+.. ..-.+.+||++|.|-=.++-.++.-. -..|-+.|-+++.++-.++-...-..
T Consensus 6 gnvciwpseeala~~~l~~~---n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~--- 79 (201)
T KOG3201|consen 6 GNVCIWPSEEALAWTILRDP---NKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA--- 79 (201)
T ss_pred CcEEecccHHHHHHHHHhch---hHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc---
Confidence 34455556666665543211 11135789999999655555444132 24788999999998877765432100
Q ss_pred CCCcce---EEEEcCCCCCCCCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 209 DMHKAT---NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 209 ~~~~~v---~f~~~d~~~~~~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
...... +...-..+.. .+...||.|+|.-|+.+=.--+ .+.+.+...|+|
T Consensus 80 s~~tsc~vlrw~~~~aqsq-~eq~tFDiIlaADClFfdE~h~--sLvdtIk~lL~p 132 (201)
T KOG3201|consen 80 SSLTSCCVLRWLIWGAQSQ-QEQHTFDIILAADCLFFDEHHE--SLVDTIKSLLRP 132 (201)
T ss_pred cccceehhhHHHHhhhHHH-HhhCcccEEEeccchhHHHHHH--HHHHHHHHHhCc
Confidence 001111 1111111111 1235899999998764433233 677888888887
No 265
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=90.96 E-value=0.94 Score=41.78 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=61.4
Q ss_pred HHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEE
Q 024811 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (262)
Q Consensus 140 ~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~ 217 (262)
+++-.++. ..++.+|+|-|.|.|.++-.+++...+ ++.-+|.-+.--+.|.+.+... .-..+++++
T Consensus 95 a~I~~~L~-------i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h-----gi~~~vt~~ 162 (314)
T KOG2915|consen 95 AMILSMLE-------IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH-----GIGDNVTVT 162 (314)
T ss_pred HHHHHHhc-------CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-----CCCcceEEE
Confidence 45555554 457899999999999999999954443 6777898888888888877542 134688888
Q ss_pred EcCCCCCCC--CCCccchhhhh
Q 024811 218 CVPLQDFTP--ETGRYDVIWVQ 237 (262)
Q Consensus 218 ~~d~~~~~~--~~~~yDlI~s~ 237 (262)
.-|+..-.+ ....+|+|+.-
T Consensus 163 hrDVc~~GF~~ks~~aDaVFLD 184 (314)
T KOG2915|consen 163 HRDVCGSGFLIKSLKADAVFLD 184 (314)
T ss_pred EeecccCCccccccccceEEEc
Confidence 877765433 23578887654
No 266
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=90.41 E-value=0.36 Score=45.12 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=53.8
Q ss_pred CCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC-----C-CCC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-ETG 229 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~-----~-~~~ 229 (262)
+++..+|+=-|.|..|..++... ...|.++|.++.+++.|++++... ..++.++..++.++. . ...
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-------~~r~~~~~~~F~~l~~~l~~~~~~~ 92 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-------DDRFIFIHGNFSNLDEYLKELNGIN 92 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-------CTTEEEEES-GGGHHHHHHHTTTTS
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-------cceEEEEeccHHHHHHHHHHccCCC
Confidence 57789999999999999999543 357999999999999999998642 346777777766542 1 123
Q ss_pred ccchhhhhh--HHhhcCchh
Q 024811 230 RYDVIWVQW--CIGHLTDDD 247 (262)
Q Consensus 230 ~yDlI~s~~--vl~hltD~e 247 (262)
.+|.|+.-. +.+|+.+++
T Consensus 93 ~~dgiL~DLGvSS~Qld~~~ 112 (310)
T PF01795_consen 93 KVDGILFDLGVSSMQLDDPE 112 (310)
T ss_dssp -EEEEEEE-S--HHHHHTGG
T ss_pred ccCEEEEccccCHHHhCCCC
Confidence 556555432 345555544
No 267
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=89.87 E-value=0.91 Score=38.57 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=38.9
Q ss_pred HHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHh
Q 024811 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (262)
Q Consensus 140 ~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~ 198 (262)
.+++.++... ..++..|||.=||+|..+.... +.+.+..++|+++...+.|++
T Consensus 179 ~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~-~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAE-ELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHH-HTT-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhh-----hccceeeehhhhccChHHHHHH-HcCCeEEEEeCCHHHHHHhcC
Confidence 3455555422 2368899999999999877777 788899999999999999975
No 268
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=89.60 E-value=0.52 Score=39.60 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=42.6
Q ss_pred cCCeeEEEeccchhHHHHHHHHhhcCCCCCCCCCceeecccCCCCCccCCHHHHHHH
Q 024811 34 AKPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWRE 90 (262)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~g~ef~s~~e~W~~ 90 (262)
.+...+|+..|++|++++-+++.+++.- ++++.|.+-|.+..|.+ |..++-+.
T Consensus 68 ~~~D~vvly~PKaK~e~~~lL~~l~~~L--~~g~~i~vVGEnk~GIk--Sa~K~L~~ 120 (155)
T PF08468_consen 68 QDFDTVVLYWPKAKAEAQYLLANLLSHL--PPGTEIFVVGENKGGIK--SAEKQLAP 120 (155)
T ss_dssp TT-SEEEEE--SSHHHHHHHHHHHHTTS---TT-EEEEEEEGGGTGG--GHHHHHTT
T ss_pred cCCCEEEEEccCcHHHHHHHHHHHHHhC--CCCCEEEEEecCcccHH--HHHHHHHh
Confidence 4567899999999999999999999954 35899999999999999 99988753
No 269
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=89.23 E-value=0.68 Score=43.64 Aligned_cols=45 Identities=18% Similarity=0.069 Sum_probs=38.4
Q ss_pred CCCCceeeEeeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHhh
Q 024811 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARES 199 (262)
Q Consensus 155 ~~~~~~VLDlGcGt-G~lt~~La~~~~~-~V~~VD~s~~mld~Ar~~ 199 (262)
..++.+||..|||+ |..+..+++..+. +|.+++.++++++.+++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 34577999999998 9999999977665 599999999999999886
No 270
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=88.88 E-value=0.5 Score=43.48 Aligned_cols=91 Identities=16% Similarity=0.070 Sum_probs=53.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccccccc----CCCCCcceEEEEcCCCCCCC-CCC--
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM----APDMHKATNFFCVPLQDFTP-ETG-- 229 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~----~~~~~~~v~f~~~d~~~~~~-~~~-- 229 (262)
.+.+|||+|||.|-.....-......++..|.|...++.-.--...+... ..+......+.+.++.++.. ..+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~ 195 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTERT 195 (282)
T ss_pred cCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcccc
Confidence 57799999999999999888454478888999988884211110000000 01122233344442223322 113
Q ss_pred ccchhhhhhHHhhcCchh
Q 024811 230 RYDVIWVQWCIGHLTDDD 247 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~e 247 (262)
.||+|.++-.+.-.+...
T Consensus 196 ~ydlIlsSetiy~~~~~~ 213 (282)
T KOG2920|consen 196 HYDLILSSETIYSIDSLA 213 (282)
T ss_pred chhhhhhhhhhhCcchhh
Confidence 799999987765555443
No 271
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=88.37 E-value=0.05 Score=41.69 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=33.3
Q ss_pred eEeeccccHHHHHHHHhc--C--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--CCCccchhh
Q 024811 162 LDCGSGIGRITKNLLIRY--F--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDVIW 235 (262)
Q Consensus 162 LDlGcGtG~lt~~La~~~--~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~~~~yDlI~ 235 (262)
||+|+..|..|..+++.. . .++.+||+.+. .+.+++.+... ....++.++.++..++-+ ..++||+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~-----~~~~~~~~~~g~s~~~l~~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA-----GLSDRVEFIQGDSPDFLPSLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------G-----GG-BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc-----CCCCeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence 689999999999888322 1 26899999995 22222222111 012468999998866521 125899988
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.-.. |-. +.....+..+...|+||
T Consensus 75 iDg~--H~~-~~~~~dl~~~~~~l~~g 98 (106)
T PF13578_consen 75 IDGD--HSY-EAVLRDLENALPRLAPG 98 (106)
T ss_dssp EES-----H-HHHHHHHHHHGGGEEEE
T ss_pred ECCC--CCH-HHHHHHHHHHHHHcCCC
Confidence 7642 221 22335677777777775
No 272
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=87.62 E-value=1 Score=41.17 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=67.5
Q ss_pred CceeeEeeccccHHHHHHHHhcC------CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC--CCCCC
Q 024811 158 HLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETG 229 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~------~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~--~~~~~ 229 (262)
....+|+|+|+-.=|+.|+ +.+ -...-||.|+..+...-+.+...- ..-.+.-+++|.+.. .++..
T Consensus 79 ~~~lveLGsGns~Ktr~Ll-da~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y-----~~l~v~~l~~~~~~~La~~~~~ 152 (321)
T COG4301 79 ACTLVELGSGNSTKTRILL-DALAHRGSLLRYVPIDVSASILRATATAILREY-----PGLEVNALCGDYELALAELPRG 152 (321)
T ss_pred cceEEEecCCccHHHHHHH-HHhhhcCCcceeeeecccHHHHHHHHHHHHHhC-----CCCeEeehhhhHHHHHhcccCC
Confidence 5689999999999999998 443 257789999999886655543210 111344456666442 11122
Q ss_pred -ccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 230 -RYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 -~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
+-=.++...+++.++..+...||.+++..|.||
T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pG 186 (321)
T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPG 186 (321)
T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCCCc
Confidence 222233445799999999999999999999998
No 273
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=87.26 E-value=2.3 Score=42.62 Aligned_cols=98 Identities=11% Similarity=0.141 Sum_probs=72.1
Q ss_pred CceeeEeeccccHHHHHHHHhc---CC--cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccc
Q 024811 158 HLVALDCGSGIGRITKNLLIRY---FN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~---~~--~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yD 232 (262)
...|+=+|+|-|-+....++.. .. ++.+||=+|.++-..+.+--. .-..+++++.+||..|.++..+.|
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~------~W~~~Vtii~~DMR~w~ap~eq~D 441 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE------CWDNRVTIISSDMRKWNAPREQAD 441 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh------hhcCeeEEEeccccccCCchhhcc
Confidence 4578899999999887776322 22 467889999888777663211 123589999999999986547899
Q ss_pred hhhhhhHHhhcCchhHH-HHHHHHHhhccCC
Q 024811 233 VIWVQWCIGHLTDDDFV-SFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~vl~hltD~el~-~~l~~~~~~LkPG 262 (262)
++||- .|+-+.|.|+. +.|.-+...|||.
T Consensus 442 I~VSE-LLGSFGDNELSPECLDG~q~fLkpd 471 (649)
T KOG0822|consen 442 IIVSE-LLGSFGDNELSPECLDGAQKFLKPD 471 (649)
T ss_pred chHHH-hhccccCccCCHHHHHHHHhhcCCC
Confidence 98876 47778887764 5788888888873
No 274
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.04 E-value=1.2 Score=40.38 Aligned_cols=98 Identities=17% Similarity=0.107 Sum_probs=55.5
Q ss_pred HHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHH--hcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEE
Q 024811 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLI--RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (262)
Q Consensus 140 ~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~--~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~ 217 (262)
..|..++...-.+ -..+..++||||.|--- --+|+. .++-+.++.|.++..++.|+..+..- . .....+++.
T Consensus 62 h~laDLL~s~~g~-~~~~~i~~LDIGvGAnC-IYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N-~---~l~~~I~lr 135 (292)
T COG3129 62 HHLADLLASTSGQ-IPGKNIRILDIGVGANC-IYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISAN-P---GLERAIRLR 135 (292)
T ss_pred HHHHHHHHhcCCC-CCcCceEEEeeccCccc-ccccccceeecceeecCccCHHHHHHHHHHHHcC-c---chhhheeEE
Confidence 4566666532111 12356789999877432 233331 12346788999999999999887531 1 112234443
Q ss_pred E-cCCC----CCCCCCCccchhhhhhHHhhc
Q 024811 218 C-VPLQ----DFTPETGRYDVIWVQWCIGHL 243 (262)
Q Consensus 218 ~-~d~~----~~~~~~~~yDlI~s~~vl~hl 243 (262)
. .|-. +..-..+.||++.||..||--
T Consensus 136 ~qk~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 136 RQKDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred eccCccccccccccccceeeeEecCCCcchh
Confidence 2 2211 111123689999999987643
No 275
>PRK11524 putative methyltransferase; Provisional
Probab=86.85 E-value=2.1 Score=38.97 Aligned_cols=58 Identities=17% Similarity=0.051 Sum_probs=46.0
Q ss_pred HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccc
Q 024811 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (262)
Q Consensus 139 ~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~ 202 (262)
..+++.++... ..+++.|||.=||+|..+.... +.+.+..++|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~-----S~~GD~VLDPF~GSGTT~~AA~-~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILAS-----SNPGDIVLDPFAGSFTTGAVAK-ASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 34566665421 2368899999999999777666 7788999999999999999999853
No 276
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=85.52 E-value=0.43 Score=44.45 Aligned_cols=105 Identities=13% Similarity=0.082 Sum_probs=72.2
Q ss_pred CCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC--CCCCccc
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~--~~~~~yD 232 (262)
..+.++|=||.|-|.+.+..+++. +.+++++|.....++.+++.+...... =.++++.++-+|-..|- ...++||
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~g--y~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACG--YEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcc--cCCCceEEEeccHHHHHHHhccCCce
Confidence 457899999999999999888442 568999999999999999887542111 12457788877765441 1237999
Q ss_pred hhhhhhH--HhhcCchhHHHHHHHHHhhccCC
Q 024811 233 VIWVQWC--IGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 233 lI~s~~v--l~hltD~el~~~l~~~~~~LkPG 262 (262)
+|+.-.+ ++--...=...++.-+.+.||||
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~d 229 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGD 229 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCC
Confidence 9985432 22222211235888888888885
No 277
>PRK13699 putative methylase; Provisional
Probab=85.51 E-value=2.8 Score=37.18 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=40.1
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~ 202 (262)
+++.|||.=||+|....... +.+.+..++|++++..+.|.+++..
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~-~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAAL-QSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHH-HcCCCEEEEecCHHHHHHHHHHHHH
Confidence 57899999999999887777 7788999999999999999998854
No 278
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=85.35 E-value=1.1 Score=39.26 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=25.2
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCC--cEEEEeC
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEP 188 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~ 188 (262)
+.++.+||||||.+|..+.-..++..+ -|.+||+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL 102 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence 346889999999999999988854434 3556653
No 279
>PTZ00357 methyltransferase; Provisional
Probab=84.20 E-value=2.4 Score=43.89 Aligned_cols=101 Identities=14% Similarity=0.173 Sum_probs=63.5
Q ss_pred ceeeEeeccccHHHHHHHHhcCC------cEEEEeCCHHHHHHHHhhcccccccCC---CCCcceEEEEcCCCCCCCCC-
Q 024811 159 LVALDCGSGIGRITKNLLIRYFN------EVDLLEPVSHFLDAARESLAPENHMAP---DMHKATNFFCVPLQDFTPET- 228 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~------~V~~VD~s~~mld~Ar~~l~~a~~~~~---~~~~~v~f~~~d~~~~~~~~- 228 (262)
..|+=+|+|-|-+-...+ +... +|.+||=++..+.....+......+.. ..+..++++..||.+|..+.
T Consensus 702 vVImVVGAGRGPLVdraL-rAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~ 780 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECL-HAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAE 780 (1072)
T ss_pred EEEEEEcCCccHHHHHHH-HHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccc
Confidence 468999999999888777 4322 688899886543333333211111100 01346899999999996431
Q ss_pred ----------CccchhhhhhHHhhcCchhHH-HHHHHHHhhccC
Q 024811 229 ----------GRYDVIWVQWCIGHLTDDDFV-SFFKRAKVNHSQ 261 (262)
Q Consensus 229 ----------~~yDlI~s~~vl~hltD~el~-~~l~~~~~~LkP 261 (262)
+++|+|||- .|+=|-|.||. +-|.-+.+.|||
T Consensus 781 ~~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 781 NGSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred cccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhh
Confidence 379998886 46777776653 466666666653
No 280
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=83.88 E-value=1 Score=40.58 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=45.4
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~ 225 (262)
..-|.+||.|+|.+|+.++.....+.++||.++.++.-.+-..+.+ .....++..|+..|.
T Consensus 51 ~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa-------~~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA-------PGKLRIHHGDVLRFK 111 (326)
T ss_pred cceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC-------CcceEEeccccceeh
Confidence 5679999999999999999555678999999999988766543322 235566677766553
No 281
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.21 E-value=1.2 Score=41.47 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=47.8
Q ss_pred eeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-CCccchhhhhh
Q 024811 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQW 238 (262)
Q Consensus 161 VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-~~~yDlI~s~~ 238 (262)
|+|+=||.|.++.-|-...+.-+-.+|.++..++.-+.+... .++..|+.++.+. -..+|+++...
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~------------~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN------------KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC------------CCCccChhhhhhhhCCCcCEEEecC
Confidence 689999999999999844455566799999999999888631 3345667666432 13578887654
No 282
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=81.48 E-value=4.3 Score=35.89 Aligned_cols=98 Identities=14% Similarity=0.022 Sum_probs=60.6
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcCC--cEEEEeCCHH----------HHHHHHhhcccccccCCCCCcceEEEEcCC
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSH----------FLDAARESLAPENHMAPDMHKATNFFCVPL 221 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~~--~V~~VD~s~~----------mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~ 221 (262)
+++++.+|+|+=.|.|..|+.|+.-.++ .|..+-|.+. +-..+++. ...|...+..++
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~----------~~aN~e~~~~~~ 114 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP----------VYANVEVIGKPL 114 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh----------hhhhhhhhCCcc
Confidence 4567899999999999999999933333 4555533332 11122221 123555566666
Q ss_pred CCCCCCCCccchhhhhhH--HhhcCc---hhHHHHHHHHHhhccCC
Q 024811 222 QDFTPETGRYDVIWVQWC--IGHLTD---DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 222 ~~~~~~~~~yDlI~s~~v--l~hltD---~el~~~l~~~~~~LkPG 262 (262)
..+.+ +...|++|-+.. ..|+.. .-..++...+.+.||||
T Consensus 115 ~A~~~-pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPG 159 (238)
T COG4798 115 VALGA-PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPG 159 (238)
T ss_pred cccCC-CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCC
Confidence 66654 367888887433 222222 22337999999999998
No 283
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=81.45 E-value=6.4 Score=34.96 Aligned_cols=57 Identities=11% Similarity=0.056 Sum_probs=40.5
Q ss_pred HHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhh
Q 024811 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARES 199 (262)
Q Consensus 142 L~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~ 199 (262)
|...+.+.+.+.++.++.+||=+|+-+|....+++ ... ..|.+||.|+.+....-..
T Consensus 61 LaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVS-DIv~~G~iYaVEfs~R~~reLl~~ 119 (231)
T COG1889 61 LAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVS-DIVGEGRIYAVEFSPRPMRELLDV 119 (231)
T ss_pred HHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHH-hccCCCcEEEEEecchhHHHHHHH
Confidence 44433333333356678999999999999999999 653 3589999999876544443
No 284
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=81.29 E-value=1.4 Score=35.12 Aligned_cols=45 Identities=20% Similarity=0.113 Sum_probs=28.2
Q ss_pred HHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhcCCcEEEEe
Q 024811 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 187 (262)
Q Consensus 139 ~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD 187 (262)
.+||..+-...- +..+...-+|+|||.|-+.--|. .-+..-.++|
T Consensus 43 AAyLi~LW~~~~---~~~~~~~FVDlGCGNGLLV~IL~-~EGy~G~GiD 87 (112)
T PF07757_consen 43 AAYLIELWRDMY---GEQKFQGFVDLGCGNGLLVYILN-SEGYPGWGID 87 (112)
T ss_pred HHHHHHHHhccc---CCCCCCceEEccCCchHHHHHHH-hCCCCccccc
Confidence 456665544221 11235578999999999988888 4444445565
No 285
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=81.16 E-value=2.7 Score=33.80 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=25.0
Q ss_pred Eeecccc--HHHHHHHH-hc--CCcEEEEeCCHHHHHHHHhh
Q 024811 163 DCGSGIG--RITKNLLI-RY--FNEVDLLEPVSHFLDAARES 199 (262)
Q Consensus 163 DlGcGtG--~lt~~La~-~~--~~~V~~VD~s~~mld~Ar~~ 199 (262)
|||+..| ..+..++. .. ..+|.++||+|...+..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 66666542 22 45689999999999999888
No 286
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=81.05 E-value=4.2 Score=37.96 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=48.0
Q ss_pred CCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~ 224 (262)
+.+..+|+=-|-|..|..++.+.. .+++++|.++.+++.|++.+..- ..+++++...+.++
T Consensus 23 ~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-------~~r~~~v~~~F~~l 85 (314)
T COG0275 23 PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-------DGRVTLVHGNFANL 85 (314)
T ss_pred CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-------CCcEEEEeCcHHHH
Confidence 468899999999999999996653 46999999999999999988542 23566666555443
No 287
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=80.93 E-value=6.4 Score=39.30 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=38.6
Q ss_pred CCCCceeeEeeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHhh
Q 024811 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (262)
Q Consensus 155 ~~~~~~VLDlGcGt-G~lt~~La~~~~~~V~~VD~s~~mld~Ar~~ 199 (262)
..++.+|+=+|||+ |..+...++..+..|.++|.++.-++.+++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 34588999999996 7788888877788999999999999999984
No 288
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=79.82 E-value=4.8 Score=36.36 Aligned_cols=94 Identities=17% Similarity=0.159 Sum_probs=52.4
Q ss_pred CCceeeEeeccccHHHHHHHH-hcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC--Cccch
Q 024811 157 QHLVALDCGSGIGRITKNLLI-RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--GRYDV 233 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~-~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~--~~yDl 233 (262)
.+.+||=+|=.--. |..++. ....+|+++|+++.+++.-++..... +-.++.+..|+.+--|+. ++||+
T Consensus 44 ~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~-------gl~i~~~~~DlR~~LP~~~~~~fD~ 115 (243)
T PF01861_consen 44 EGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEE-------GLPIEAVHYDLRDPLPEELRGKFDV 115 (243)
T ss_dssp TT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH-------T--EEEE---TTS---TTTSS-BSE
T ss_pred cCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc-------CCceEEEEecccccCCHHHhcCCCE
Confidence 36789999843322 333332 34578999999999999888766442 224888899997754432 79999
Q ss_pred hhhhhHHhhcCchhHHHHHHHHHhhccC
Q 024811 234 IWVQWCIGHLTDDDFVSFFKRAKVNHSQ 261 (262)
Q Consensus 234 I~s~~vl~hltD~el~~~l~~~~~~LkP 261 (262)
+++..+- |-+.+.-|+.+....|+.
T Consensus 116 f~TDPPy---T~~G~~LFlsRgi~~Lk~ 140 (243)
T PF01861_consen 116 FFTDPPY---TPEGLKLFLSRGIEALKG 140 (243)
T ss_dssp EEE---S---SHHHHHHHHHHHHHTB-S
T ss_pred EEeCCCC---CHHHHHHHHHHHHHHhCC
Confidence 9987641 124555799999998874
No 289
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=79.45 E-value=1.6 Score=41.13 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=16.7
Q ss_pred CCceeeEeeccccHHHHHHHHh
Q 024811 157 QHLVALDCGSGIGRITKNLLIR 178 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~ 178 (262)
...+|+|+||..|..|..+...
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ 37 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSN 37 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHH
T ss_pred CceEEEecCCCCCccHHHHHHH
Confidence 4679999999999999988743
No 290
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=78.41 E-value=6.7 Score=30.02 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=39.6
Q ss_pred ccccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC----CCCccchhhhh
Q 024811 166 SGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYDVIWVQ 237 (262)
Q Consensus 166 cGtG~lt~~La~~~---~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~----~~~~yDlI~s~ 237 (262)
||.|+++..+++.. ...|.++|.+++-++.+++. ...++.+|..+... .-.++|.|++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------------GVEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------------TSEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------------ccccccccchhhhHHhhcCccccCEEEEc
Confidence 67788888887443 33799999999999988875 24678888876421 12456666654
No 291
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=77.80 E-value=2.4 Score=42.08 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=56.5
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCC-CCCCCCCCccchhhh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~-~~~~~~~~~yDlI~s 236 (262)
-..|+|..+|.|.++..|. .. .|-++-..+. .....+..--. .+-...+ .|+ +.|+.-+.+||+|-+
T Consensus 366 iRNVMDMnAg~GGFAAAL~-~~--~VWVMNVVP~---~~~ntL~vIyd----RGLIG~y--hDWCE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALI-DD--PVWVMNVVPV---SGPNTLPVIYD----RGLIGVY--HDWCEAFSTYPRTYDLLHA 433 (506)
T ss_pred eeeeeeecccccHHHHHhc-cC--CceEEEeccc---CCCCcchhhhh----cccchhc--cchhhccCCCCcchhheeh
Confidence 4589999999999999998 32 2443322222 11111110000 0001122 122 333333468999999
Q ss_pred hhHHhhcCch-hHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDD-DFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~-el~~~l~~~~~~LkPG 262 (262)
+.+|.+..+. ++..+|-++-|+|+||
T Consensus 434 ~~lfs~~~~rC~~~~illEmDRILRP~ 460 (506)
T PF03141_consen 434 DGLFSLYKDRCEMEDILLEMDRILRPG 460 (506)
T ss_pred hhhhhhhcccccHHHHHHHhHhhcCCC
Confidence 9999888775 5668999999999996
No 292
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=74.62 E-value=6.3 Score=35.85 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=24.8
Q ss_pred CCCceeeEeeccccHHHHHHHHhcC------CcEEEEeC
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRYF------NEVDLLEP 188 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~~------~~V~~VD~ 188 (262)
.+...++|+|||.|.++..+..-.. ..+.+||-
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 3566899999999999999994331 35666664
No 293
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=74.42 E-value=1.7 Score=42.36 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=48.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~ 224 (262)
++..|-|+=||.|-++.+++ .....|.+-|.+++++++.+.++..-+ ....++..+..|..+|
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~-kK~crV~aNDLNpesik~Lk~ni~lNk----v~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAA-KKGCRVYANDLNPESIKWLKANIKLNK----VDPSAIEIFNMDAKDF 311 (495)
T ss_pred CcchhhhhhcCcCccccchh-hcCcEEEecCCCHHHHHHHHHhccccc----cchhheeeecccHHHH
Confidence 57789999999999999999 556889999999999999999986421 1123466666666554
No 294
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=71.24 E-value=23 Score=31.97 Aligned_cols=99 Identities=11% Similarity=0.010 Sum_probs=63.0
Q ss_pred ceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHH-HHHHhhcccccccCCCCCcceEEEEcCCC-CCC-------CCCC
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFL-DAARESLAPENHMAPDMHKATNFFCVPLQ-DFT-------PETG 229 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~ml-d~Ar~~l~~a~~~~~~~~~~v~f~~~d~~-~~~-------~~~~ 229 (262)
..|+.+|||-=.-.-.|- . ...+..+|.+-.-+ +.=++.+.... .....+..++.+|+. +|. +.+.
T Consensus 83 ~qvV~LGaGlDTr~~Rl~-~-~~~~~~~EvD~P~v~~~K~~~l~~~~---~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLP-W-PDGTRVFEVDQPAVLAFKEKVLAELG---AEPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred cEEEEeCCccccHHHhcC-C-CCCCeEEECCChHHHHHHHHHHHHcC---CCCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 469999999887776664 2 22467777765544 43344443211 011246778888875 221 1112
Q ss_pred ccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.-=++++-.++.||+.+++.++|+.+.+...||
T Consensus 158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~g 190 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPG 190 (260)
T ss_pred CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCC
Confidence 334666778999999999999999998877665
No 295
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=69.66 E-value=7.4 Score=34.88 Aligned_cols=104 Identities=15% Similarity=0.083 Sum_probs=59.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcC---CcEEEEeCCHHHHHHHHhhcccccc------------c---------------
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENH------------M--------------- 206 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~---~~V~~VD~s~~mld~Ar~~l~~a~~------------~--------------- 206 (262)
.+.++=|.-||.|++.--|..-+. .+|.+-|+++.+++.|++|+..... .
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 356899999999998766553333 4678889999999999998753100 0
Q ss_pred ---------CCCCCcceEEEEcCCCCCCC-----CCCccchhhhhhHHhhcCch-------hHHHHHHHHHhhcc
Q 024811 207 ---------APDMHKATNFFCVPLQDFTP-----ETGRYDVIWVQWCIGHLTDD-------DFVSFFKRAKVNHS 260 (262)
Q Consensus 207 ---------~~~~~~~v~f~~~d~~~~~~-----~~~~yDlI~s~~vl~hltD~-------el~~~l~~~~~~Lk 260 (262)
.........+.+.|+.+..+ .....|+|+.-...+++++- -..++|..+..+|.
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp 205 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLP 205 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCC
Confidence 01112234577888887432 12346888887776666652 24568888888883
No 296
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=68.69 E-value=13 Score=35.27 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=38.0
Q ss_pred CCCCceeeEeec-cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhc
Q 024811 155 NNQHLVALDCGS-GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (262)
Q Consensus 155 ~~~~~~VLDlGc-GtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l 200 (262)
.+++.+|+=+|+ |.|.++..+++..+.+|.++|.|++=++.|++.-
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lG 210 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLG 210 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhC
Confidence 445777777765 5788999999768899999999999999999963
No 297
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=67.84 E-value=2.6 Score=37.95 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=49.4
Q ss_pred eeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC-C-ccchhhhh
Q 024811 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-G-RYDVIWVQ 237 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~-~-~yDlI~s~ 237 (262)
+++|+=||.|.++.-|-...+..|-++|.++...+.-+.|.. .....|+.++.... . .+|+++..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------------~~~~~Di~~~~~~~l~~~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------------EVICGDITEIDPSDLPKDVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------------EEEESHGGGCHHHHHHHT-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------------ccccccccccccccccccceEEEec
Confidence 689999999999999995556778899999999999999862 56677777765321 1 48888866
Q ss_pred hH
Q 024811 238 WC 239 (262)
Q Consensus 238 ~v 239 (262)
.+
T Consensus 69 pP 70 (335)
T PF00145_consen 69 PP 70 (335)
T ss_dssp --
T ss_pred cC
Confidence 53
No 298
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=66.57 E-value=3.6 Score=39.64 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=16.7
Q ss_pred CCCccchhhhhhHHhhcCc
Q 024811 227 ETGRYDVIWVQWCIGHLTD 245 (262)
Q Consensus 227 ~~~~yDlI~s~~vl~hltD 245 (262)
+.++.++++|++++||++.
T Consensus 159 P~~Slh~~~Ss~slHWLS~ 177 (386)
T PLN02668 159 PARSIDVFHSAFSLHWLSQ 177 (386)
T ss_pred CCCceEEEEeeccceeccc
Confidence 3479999999999999985
No 299
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=66.51 E-value=17 Score=30.67 Aligned_cols=93 Identities=12% Similarity=0.081 Sum_probs=54.4
Q ss_pred eeeEeeccccHHHHHHHHhcCCcEEEEeCCHHH-HHHHHhhcccccccCCCCCcceEEEEcCCCCCC---------CCCC
Q 024811 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHF-LDAARESLAPENHMAPDMHKATNFFCVPLQDFT---------PETG 229 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~m-ld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~---------~~~~ 229 (262)
.|+-+|||-=...-.|. .....+..+|.+..- ++.-++.+...... ...+.+++.+|+.+.. ....
T Consensus 81 qvV~LGaGlDTr~~Rl~-~~~~~~~~~evD~p~v~~~K~~~l~~~~~~---~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 81 QVVNLGAGLDTRAYRLD-NPAGGVRWFEVDLPEVIALKRRLLPESGAR---PPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp EEEEET-TT--HHHHHH-HTTTTEEEEEEE-HHHHHHHHHHHHHTHHH---HHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred EEEEcCCCCCchHHHhh-ccccceEEEEeCCHHHHHHHHHHHHhCccc---CCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 79999999999999998 433366777666544 44444444332100 0123568999998631 1123
Q ss_pred ccchhhhhhHHhhcCchhHHHHHHHHH
Q 024811 230 RYDVIWVQWCIGHLTDDDFVSFFKRAK 256 (262)
Q Consensus 230 ~yDlI~s~~vl~hltD~el~~~l~~~~ 256 (262)
..=+|++-.++.||+.+++.++|+.++
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 444666777899999999888888763
No 300
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=66.22 E-value=9.7 Score=37.71 Aligned_cols=79 Identities=11% Similarity=-0.041 Sum_probs=48.3
Q ss_pred CCceeeEeeccccHHHHHHHHhc---C--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC-----CC
Q 024811 157 QHLVALDCGSGIGRITKNLLIRY---F--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----TP 226 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~---~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~-----~~ 226 (262)
+..+|.|--||+|.+-....... . ....+.|.++.....|+-++-..... . .+....+|-..- ..
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~----~-~~~i~~~dtl~~~~~~~~~ 260 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE----G-DANIRHGDTLSNPKHDDKD 260 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC----c-cccccccccccCCcccccC
Confidence 45689999999998765555222 1 34789999999999999887432110 0 112222221111 11
Q ss_pred CCCccchhhhhhHH
Q 024811 227 ETGRYDVIWVQWCI 240 (262)
Q Consensus 227 ~~~~yDlI~s~~vl 240 (262)
..++||+|+++..+
T Consensus 261 ~~~~~D~viaNPPf 274 (489)
T COG0286 261 DKGKFDFVIANPPF 274 (489)
T ss_pred CccceeEEEeCCCC
Confidence 23679999998754
No 301
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=65.19 E-value=37 Score=31.93 Aligned_cols=105 Identities=14% Similarity=0.158 Sum_probs=67.2
Q ss_pred CCceeeEeeccccHHHHHHHHhcC----------------------CcEEEEeCCH--HHHHHHHhhcccc---------
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYF----------------------NEVDLLEPVS--HFLDAARESLAPE--------- 203 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~----------------------~~V~~VD~s~--~mld~Ar~~l~~a--------- 203 (262)
+..+||-||.|-|.--..|+ ..+ -+|++||+.+ ..++.....+...
T Consensus 86 ~~~~VlCIGGGAGAElVAlA-a~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~ 164 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALA-AAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASA 164 (315)
T ss_pred cCceEEEECCChHHHHHHHH-HHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccc
Confidence 34799999999987666665 322 1678887654 3344444444322
Q ss_pred --cccCCCCCcceEEEEcCCCCCCCCC-------CccchhhhhhHHhhcCc---hhHHHHHHHHHhhccCC
Q 024811 204 --NHMAPDMHKATNFFCVPLQDFTPET-------GRYDVIWVQWCIGHLTD---DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 204 --~~~~~~~~~~v~f~~~d~~~~~~~~-------~~yDlI~s~~vl~hltD---~el~~~l~~~~~~LkPG 262 (262)
........-+++|.+.|+.....+. ...|+|...+.++-|=- .+-.+||.++...++||
T Consensus 165 ~~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~G 235 (315)
T PF11312_consen 165 ANWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPG 235 (315)
T ss_pred cccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCC
Confidence 0011112236889999998875421 24789888887755422 34457999999999998
No 302
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=64.93 E-value=6 Score=32.79 Aligned_cols=74 Identities=12% Similarity=0.165 Sum_probs=48.1
Q ss_pred cEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--CCCccchhhhhhHHhhcCc--------hh-HHH
Q 024811 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDVIWVQWCIGHLTD--------DD-FVS 250 (262)
Q Consensus 182 ~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~~~~yDlI~s~~vl~hltD--------~e-l~~ 250 (262)
+|.++|+=+++++..++++.... ...+++++..+=+++.. +.+++|+|+.| |+||+- ++ -..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~-----~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~ 73 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG-----LEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLK 73 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT------GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC-----CCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHH
Confidence 48899999999999999997642 22468888766555432 11489999888 456553 22 345
Q ss_pred HHHHHHhhccCC
Q 024811 251 FFKRAKVNHSQT 262 (262)
Q Consensus 251 ~l~~~~~~LkPG 262 (262)
+++.+.+.|+||
T Consensus 74 Al~~al~lL~~g 85 (140)
T PF06962_consen 74 ALEAALELLKPG 85 (140)
T ss_dssp HHHHHHHHEEEE
T ss_pred HHHHHHHhhccC
Confidence 788888888875
No 303
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=64.50 E-value=7.9 Score=36.07 Aligned_cols=72 Identities=14% Similarity=0.078 Sum_probs=53.7
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC--C-ccchh
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--G-RYDVI 234 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~--~-~yDlI 234 (262)
..+++|+=||.|.+..-|-...+.-+.++|.++..++.=+.+... ..+...|+.++.... . .+|+|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----------~~~~~~di~~~~~~~~~~~~~Dvl 71 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----------GDIILGDIKELDGEALRKSDVDVL 71 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----------CceeechHhhcChhhccccCCCEE
Confidence 357999999999999988854567788899999999999888641 355666666654322 1 68999
Q ss_pred hhhhHH
Q 024811 235 WVQWCI 240 (262)
Q Consensus 235 ~s~~vl 240 (262)
+..+..
T Consensus 72 igGpPC 77 (328)
T COG0270 72 IGGPPC 77 (328)
T ss_pred EeCCCC
Confidence 876543
No 304
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=63.03 E-value=3.2 Score=36.64 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=47.3
Q ss_pred CCceeeEeec-cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhh
Q 024811 157 QHLVALDCGS-GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (262)
Q Consensus 157 ~~~~VLDlGc-GtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~ 235 (262)
.+.+||=+|+ =||+.+..++ ..-++|+++|+.|.|.-..+.++ .|..+ ..+..+.||+|+
T Consensus 44 E~~~vli~G~YltG~~~a~~L-s~~~~vtv~Di~p~~r~~lp~~v--------------~Fr~~----~~~~~G~~Dliv 104 (254)
T COG4017 44 EFKEVLIFGVYLTGNYTAQML-SKADKVTVVDIHPFMRGFLPNNV--------------KFRNL----LKFIRGEVDLIV 104 (254)
T ss_pred CcceEEEEEeeehhHHHHHHh-cccceEEEecCCHHHHhcCCCCc--------------cHhhh----cCCCCCceeEEE
Confidence 4678999995 5899888888 44678999999999987666543 33222 122336777777
Q ss_pred hhhHHhhcCc
Q 024811 236 VQWCIGHLTD 245 (262)
Q Consensus 236 s~~vl~hltD 245 (262)
-.--++-++.
T Consensus 105 DlTGlGG~~P 114 (254)
T COG4017 105 DLTGLGGIEP 114 (254)
T ss_pred eccccCCCCH
Confidence 6555555444
No 305
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=62.43 E-value=18 Score=32.51 Aligned_cols=44 Identities=18% Similarity=0.098 Sum_probs=36.2
Q ss_pred CCCCceeeEeecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHh
Q 024811 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (262)
Q Consensus 155 ~~~~~~VLDlGcG-tG~lt~~La~~~~~~V~~VD~s~~mld~Ar~ 198 (262)
..++.+||..|+| .|..+..+++..+.+|.+++.++...+.+++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 3456788888876 5889999997778889999999999988865
No 306
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=60.39 E-value=16 Score=33.03 Aligned_cols=42 Identities=21% Similarity=0.116 Sum_probs=33.4
Q ss_pred CCceeeEeeccc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHh
Q 024811 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (262)
Q Consensus 157 ~~~~VLDlGcGt-G~lt~~La~~~~~-~V~~VD~s~~mld~Ar~ 198 (262)
++.+||-.|||. |..+..+++..+. .|.+++.++...+.+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 567888888876 7788888866665 78999999998887765
No 307
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=59.86 E-value=2.7 Score=39.37 Aligned_cols=44 Identities=25% Similarity=0.164 Sum_probs=37.3
Q ss_pred CceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhcc
Q 024811 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA 201 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~ 201 (262)
+..|+|+=+|+|++|.+++-.. ...|.+.|.+|..++..++++.
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~ 239 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAE 239 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHH
Confidence 5789999999999999544344 5689999999999999999874
No 308
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=59.82 E-value=23 Score=30.30 Aligned_cols=44 Identities=20% Similarity=0.125 Sum_probs=36.4
Q ss_pred CCCceeeEeeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHhh
Q 024811 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (262)
Q Consensus 156 ~~~~~VLDlGcGt-G~lt~~La~~~~~~V~~VD~s~~mld~Ar~~ 199 (262)
.++.+||-.|+|. |..+..+++..+.+|.+++.++...+.+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~ 177 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL 177 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 4578999999984 8888888877788999999999888887653
No 309
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=57.81 E-value=9.5 Score=36.08 Aligned_cols=93 Identities=10% Similarity=0.059 Sum_probs=66.4
Q ss_pred CceeeEeeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhh
Q 024811 158 HLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (262)
Q Consensus 158 ~~~VLDlGcGt-G~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s 236 (262)
+.+|.=+|.|. |..+..++...+.+|+.+|.|..-+........ .++....+...++...-.++|+||.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~----------~rv~~~~st~~~iee~v~~aDlvIg 237 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG----------GRVHTLYSTPSNIEEAVKKADLVIG 237 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC----------ceeEEEEcCHHHHHHHhhhccEEEE
Confidence 56788888885 777888886778999999999998888887653 2566666666666443468999887
Q ss_pred hhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 237 QWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 237 ~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.-.+.--.+|- -..+++...++||
T Consensus 238 aVLIpgakaPk--Lvt~e~vk~MkpG 261 (371)
T COG0686 238 AVLIPGAKAPK--LVTREMVKQMKPG 261 (371)
T ss_pred EEEecCCCCce--ehhHHHHHhcCCC
Confidence 65455555555 4566666667765
No 310
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.63 E-value=12 Score=34.76 Aligned_cols=85 Identities=14% Similarity=0.165 Sum_probs=56.6
Q ss_pred CCceeeEeecccc--H-HHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-------
Q 024811 157 QHLVALDCGSGIG--R-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (262)
Q Consensus 157 ~~~~VLDlGcGtG--~-lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~------- 226 (262)
++..||==|+|.| | ++..++ +++..+.+.|.+++..+.-.+++... ..+..+.+|+.+.+.
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa-~rg~~~vl~Din~~~~~etv~~~~~~--------g~~~~y~cdis~~eei~~~a~~ 107 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFA-KRGAKLVLWDINKQGNEETVKEIRKI--------GEAKAYTCDISDREEIYRLAKK 107 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHH-HhCCeEEEEeccccchHHHHHHHHhc--------CceeEEEecCCCHHHHHHHHHH
Confidence 3567777776655 4 566677 55668889999999988887776531 256777888876421
Q ss_pred ---CCCccchhhhhhH------HhhcCchhHHH
Q 024811 227 ---ETGRYDVIWVQWC------IGHLTDDDFVS 250 (262)
Q Consensus 227 ---~~~~yDlI~s~~v------l~hltD~el~~ 250 (262)
+-+..|++|.|-. +.+.+|+++.+
T Consensus 108 Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k 140 (300)
T KOG1201|consen 108 VKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQK 140 (300)
T ss_pred HHHhcCCceEEEeccccccCCCccCCCHHHHHH
Confidence 1267888887753 44556666555
No 311
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=57.49 E-value=9.7 Score=36.51 Aligned_cols=73 Identities=12% Similarity=0.096 Sum_probs=48.7
Q ss_pred CceeeEeeccccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHhhcccccccCCCCCc-ceEEEEcCCCCCCC-CCCccch
Q 024811 158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFTP-ETGRYDV 233 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~-~v~f~~~d~~~~~~-~~~~yDl 233 (262)
..+|||.=||+|-=+...+++. ..+|++-|.|+..++..++|+..- .... .+.+.+.|...+-. ....||+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N-----~~~~~~~~v~~~DAn~ll~~~~~~fD~ 124 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN-----GLEDERIEVSNMDANVLLYSRQERFDV 124 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC-----T-SGCCEEEEES-HHHHHCHSTT-EEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc-----cccCceEEEehhhHHHHhhhccccCCE
Confidence 5689999999999999999772 468899999999999999997531 1112 46677767655421 2256777
Q ss_pred hh
Q 024811 234 IW 235 (262)
Q Consensus 234 I~ 235 (262)
|=
T Consensus 125 ID 126 (377)
T PF02005_consen 125 ID 126 (377)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 312
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=56.86 E-value=26 Score=32.15 Aligned_cols=43 Identities=23% Similarity=0.172 Sum_probs=32.6
Q ss_pred CCceeeEeecc-ccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHhh
Q 024811 157 QHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARES 199 (262)
Q Consensus 157 ~~~~VLDlGcG-tG~lt~~La~~~~~-~V~~VD~s~~mld~Ar~~ 199 (262)
++.+||=.||| .|.++..+++..+. +|.++|.+++-++.+++.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l 213 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM 213 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc
Confidence 46678877764 56677777755565 688999999999999873
No 313
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=55.71 E-value=12 Score=35.96 Aligned_cols=45 Identities=16% Similarity=0.023 Sum_probs=39.6
Q ss_pred CceeeEeeccccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHhhccc
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAP 202 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~-~V~~VD~s~~mld~Ar~~l~~ 202 (262)
..+|||-=+|||-=++..+.+... .|.+-|+||..++.+++|+..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~ 98 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRL 98 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHh
Confidence 568999999999999999977655 788889999999999999854
No 314
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=55.59 E-value=9.6 Score=36.63 Aligned_cols=51 Identities=4% Similarity=0.089 Sum_probs=45.0
Q ss_pred cceEEEEcCCCCCC--CCCCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 212 KATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 212 ~~v~f~~~d~~~~~--~~~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
.+++++..++.++- .++++||.++.+-...+++++++.+.++++.+.++||
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pg 327 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPG 327 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCC
Confidence 57899999998862 2347999999999999999999999999999999997
No 315
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=54.04 E-value=36 Score=31.36 Aligned_cols=43 Identities=28% Similarity=0.125 Sum_probs=32.6
Q ss_pred CCceeeEeeccc-cHHHHHHHHhcCCcEEEEeC---CHHHHHHHHhh
Q 024811 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEP---VSHFLDAARES 199 (262)
Q Consensus 157 ~~~~VLDlGcGt-G~lt~~La~~~~~~V~~VD~---s~~mld~Ar~~ 199 (262)
++.+||=+|+|. |.++..+++..+.+|.+++. ++.-++.+++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~ 218 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL 218 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc
Confidence 467888888764 77888888667778988876 67777877753
No 316
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=53.25 E-value=28 Score=34.77 Aligned_cols=45 Identities=18% Similarity=0.100 Sum_probs=32.1
Q ss_pred ccccHHHHHHHHh---cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCC
Q 024811 166 SGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (262)
Q Consensus 166 cGtG~lt~~La~~---~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~ 223 (262)
||.|+++..+++. .+.+|.++|.+++.++.+++. ....+.+|..+
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-------------g~~~i~GD~~~ 470 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-------------GIRAVLGNAAN 470 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-------------CCeEEEcCCCC
Confidence 5556666666633 356899999999999988763 34566777665
No 317
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=52.78 E-value=28 Score=33.51 Aligned_cols=47 Identities=13% Similarity=-0.096 Sum_probs=39.8
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~ 202 (262)
++++++||=|.+|-.++.-.|+ ..-.+|++||+||..+...+-+++.
T Consensus 33 i~~~d~vl~ItSaG~N~L~yL~-~~P~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDYLL-AGPKRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred CCCCCeEEEEccCCchHHHHHh-cCCceEEEEeCCHHHHHHHHHHHHH
Confidence 4468899999999888877777 6667999999999999999888764
No 318
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=50.39 E-value=26 Score=26.95 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=29.9
Q ss_pred cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhh
Q 024811 167 GIGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (262)
Q Consensus 167 GtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~ 199 (262)
|+|.++..+++..+.+|.++|.++.-++.+++.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~ 33 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL 33 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh
Confidence 679999999988889999999999999999885
No 319
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=49.99 E-value=50 Score=29.73 Aligned_cols=38 Identities=18% Similarity=0.070 Sum_probs=26.3
Q ss_pred eeEeeccc--cHHHHHHHHhcCCcEEEEeCCHHHHHHHHhh
Q 024811 161 ALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (262)
Q Consensus 161 VLDlGcGt--G~lt~~La~~~~~~V~~VD~s~~mld~Ar~~ 199 (262)
|.=||+|. |.++..|. +.+.+|.++|.++..++.+.+.
T Consensus 3 I~IIG~G~mG~sla~~L~-~~g~~V~~~d~~~~~~~~a~~~ 42 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLR-SLGHTVYGVSRRESTCERAIER 42 (279)
T ss_pred EEEEeecHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHC
Confidence 44467663 34555555 4566899999999988877653
No 320
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=49.73 E-value=31 Score=32.53 Aligned_cols=46 Identities=20% Similarity=0.125 Sum_probs=38.8
Q ss_pred CCceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccc
Q 024811 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a 203 (262)
.+.+|.-+|+|-=++...|. +.-.+|++||+++..|..-+-+++.-
T Consensus 63 ~ghrivtigSGGcn~L~yls-r~Pa~id~VDlN~ahiAln~lklaA~ 108 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLS-RAPARIDVVDLNPAHIALNRLKLAAF 108 (414)
T ss_pred CCcEEEEecCCcchHHHHhh-cCCceeEEEeCCHHHHHHHHHHHHHH
Confidence 57899999999887877777 76779999999999999888777543
No 321
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=48.95 E-value=41 Score=32.11 Aligned_cols=67 Identities=18% Similarity=0.023 Sum_probs=42.5
Q ss_pred CceeeEeeccccHHHHHHHHh---cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC----CCCCc
Q 024811 158 HLVALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR 230 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~---~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~----~~~~~ 230 (262)
..+|+=||+ |+++..+++. .+..|+++|.+++.++.+++... .+.++.+|..+.. .....
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~-----------~~~~i~gd~~~~~~L~~~~~~~ 297 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELP-----------NTLVLHGDGTDQELLEEEGIDE 297 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC-----------CCeEEECCCCCHHHHHhcCCcc
Confidence 456777776 6666666633 35679999999999988877531 3456666665431 11245
Q ss_pred cchhhhh
Q 024811 231 YDVIWVQ 237 (262)
Q Consensus 231 yDlI~s~ 237 (262)
+|+|++.
T Consensus 298 a~~vi~~ 304 (453)
T PRK09496 298 ADAFIAL 304 (453)
T ss_pred CCEEEEC
Confidence 6766653
No 322
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=48.44 E-value=44 Score=29.99 Aligned_cols=44 Identities=14% Similarity=0.033 Sum_probs=36.1
Q ss_pred CCCCceeeEeecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHh
Q 024811 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (262)
Q Consensus 155 ~~~~~~VLDlGcG-tG~lt~~La~~~~~~V~~VD~s~~mld~Ar~ 198 (262)
..++.+||-.||| .|..+..+++..+.+|.+++.++..++.+++
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~ 204 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK 204 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3456788889987 8888888887777889999999999888754
No 323
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=48.43 E-value=39 Score=32.10 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=36.3
Q ss_pred cCCCCceeeEeeccc-cHHHHHHHHhc-CCcEEEEeCCHHHHHHHHh
Q 024811 154 RNNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARE 198 (262)
Q Consensus 154 ~~~~~~~VLDlGcGt-G~lt~~La~~~-~~~V~~VD~s~~mld~Ar~ 198 (262)
+.+.+.+||=+|||+ |-++...++.. ..+|.++|+++.-++.|++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 355688999999996 66666666433 3689999999999999999
No 324
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.50 E-value=29 Score=28.10 Aligned_cols=79 Identities=13% Similarity=0.044 Sum_probs=49.3
Q ss_pred CceeeEeeccccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC-Cccchhh
Q 024811 158 HLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVIW 235 (262)
Q Consensus 158 ~~~VLDlGcGtG~-lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~-~~yDlI~ 235 (262)
.++|+++|.|-=. ++..|. +++-.|.++|+++. .|+ ..++|+.-|+.+-...- ...|+|+
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~-e~g~dv~atDI~~~---~a~--------------~g~~~v~DDitnP~~~iY~~A~lIY 75 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLA-ERGFDVLATDINEK---TAP--------------EGLRFVVDDITNPNISIYEGADLIY 75 (129)
T ss_pred CCcEEEEccchHHHHHHHHH-HcCCcEEEEecccc---cCc--------------ccceEEEccCCCccHHHhhCcccee
Confidence 5699999987643 677777 66677999998776 222 24678888887532210 3457776
Q ss_pred hhhHHhhcCchhHHHHHHHHHhhc
Q 024811 236 VQWCIGHLTDDDFVSFFKRAKVNH 259 (262)
Q Consensus 236 s~~vl~hltD~el~~~l~~~~~~L 259 (262)
|-- +.+|+...+-.+++.+
T Consensus 76 SiR-----pppEl~~~ildva~aV 94 (129)
T COG1255 76 SIR-----PPPELQSAILDVAKAV 94 (129)
T ss_pred ecC-----CCHHHHHHHHHHHHhh
Confidence 642 3455555555555443
No 325
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=46.37 E-value=43 Score=33.56 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=35.1
Q ss_pred CCceeeEeeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHh
Q 024811 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (262)
Q Consensus 157 ~~~~VLDlGcGt-G~lt~~La~~~~~~V~~VD~s~~mld~Ar~ 198 (262)
++.+||=+|||. |..+..+++..+..|.++|.++.-++.+++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 468999999986 577777776778889999999998888887
No 326
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=46.35 E-value=17 Score=34.62 Aligned_cols=44 Identities=14% Similarity=0.066 Sum_probs=32.7
Q ss_pred CCceeeEeecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhc
Q 024811 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (262)
Q Consensus 157 ~~~~VLDlGcG-tG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l 200 (262)
++.+|+=+|+| .|..+...+...+.+|.++|.++.-++.+....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~ 210 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF 210 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc
Confidence 35678888987 677777777666778999999987776665543
No 327
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=45.76 E-value=40 Score=34.17 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=37.6
Q ss_pred ccccHHHHHHHH---hcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC----CCCccchhhhh
Q 024811 166 SGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYDVIWVQ 237 (262)
Q Consensus 166 cGtG~lt~~La~---~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~----~~~~yDlI~s~ 237 (262)
||.|+++..+++ ....++.++|.+++.++.+++. ....+.+|..+.+. .-.+.|+|++.
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-------------g~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-------------GYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-------------CCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 556666666652 3456899999999999988763 23566777765321 11356655543
No 328
>PRK10458 DNA cytosine methylase; Provisional
Probab=43.69 E-value=81 Score=31.22 Aligned_cols=43 Identities=19% Similarity=0.040 Sum_probs=36.1
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhc
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l 200 (262)
..+++|+=||.|.++.-|-...+..|-.+|.++.+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 5699999999999999998444566778899999988888775
No 329
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=42.82 E-value=58 Score=29.89 Aligned_cols=44 Identities=11% Similarity=0.009 Sum_probs=35.4
Q ss_pred CCCCceeeEeeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHh
Q 024811 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (262)
Q Consensus 155 ~~~~~~VLDlGcGt-G~lt~~La~~~~~~V~~VD~s~~mld~Ar~ 198 (262)
..++.+||=.|||+ |..+..+++..+.+|.+++.++.-++.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 34577899999865 888888886677789999999998888865
No 330
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=42.64 E-value=31 Score=31.50 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=24.3
Q ss_pred eeEeeccc--cHHHHHHHHhcCCcEEEEeCCHHHHHHHHh
Q 024811 161 ALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (262)
Q Consensus 161 VLDlGcGt--G~lt~~La~~~~~~V~~VD~s~~mld~Ar~ 198 (262)
|-=||+|. +.++..|+ +.+.+|.+.|.+++-++.+.+
T Consensus 3 Ig~IGlG~mG~~la~~L~-~~g~~V~~~dr~~~~~~~l~~ 41 (298)
T TIGR00872 3 LGLIGLGRMGANIVRRLA-KRGHDCVGYDHDQDAVKAMKE 41 (298)
T ss_pred EEEEcchHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH
Confidence 33356553 33555555 456789999999988777665
No 331
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=41.46 E-value=35 Score=32.97 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=45.3
Q ss_pred eeeEeecc-ccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC---CCccchh
Q 024811 160 VALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRYDVI 234 (262)
Q Consensus 160 ~VLDlGcG-tG~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~---~~~yDlI 234 (262)
+||=|||| .|+...+.+.+.. .+|++.|-|..-.+.+..... .++++...|+.+.+-- -..+|+|
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----------~~v~~~~vD~~d~~al~~li~~~d~V 72 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----------GKVEALQVDAADVDALVALIKDFDLV 72 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----------ccceeEEecccChHHHHHHHhcCCEE
Confidence 68889984 3444333332444 689999999888888877642 2578888888776311 1356888
Q ss_pred hhhh
Q 024811 235 WVQW 238 (262)
Q Consensus 235 ~s~~ 238 (262)
++.-
T Consensus 73 In~~ 76 (389)
T COG1748 73 INAA 76 (389)
T ss_pred EEeC
Confidence 7664
No 332
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=40.87 E-value=34 Score=31.78 Aligned_cols=35 Identities=23% Similarity=0.163 Sum_probs=29.5
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcCCcEEEEeCC
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV 189 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s 189 (262)
.+.++...+|+|+-+|..|-.|. +..-.|+.||--
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLV-kr~m~V~aVDng 242 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLV-KRNMRVYAVDNG 242 (358)
T ss_pred hhcCCceeeecccCCCccchhhh-hcceEEEEeccc
Confidence 35578899999999999999999 667789999853
No 333
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=40.31 E-value=25 Score=30.93 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=39.5
Q ss_pred ccccHHHHHHHHh---cCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--C-CCccchhhhhhH
Q 024811 166 SGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--E-TGRYDVIWVQWC 239 (262)
Q Consensus 166 cGtG~lt~~La~~---~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--~-~~~yDlI~s~~v 239 (262)
|-+|..+..++++ ++.+|++| ..+.++-.. ...++..+.|+.+... . -..||+||+.+-
T Consensus 7 gAsG~~Gs~i~~EA~~RGHeVTAi-----vRn~~K~~~----------~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 7 GASGKAGSRILKEALKRGHEVTAI-----VRNASKLAA----------RQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred ecCchhHHHHHHHHHhCCCeeEEE-----EeChHhccc----------cccceeecccccChhhhHhhhcCCceEEEecc
Confidence 4578877777744 47889998 443333322 1256788888887643 1 147999999864
Q ss_pred Hh
Q 024811 240 IG 241 (262)
Q Consensus 240 l~ 241 (262)
..
T Consensus 72 ~~ 73 (211)
T COG2910 72 AG 73 (211)
T ss_pred CC
Confidence 33
No 334
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=39.24 E-value=90 Score=29.77 Aligned_cols=101 Identities=18% Similarity=0.238 Sum_probs=57.0
Q ss_pred CCceeeEeeccccHHHHHHH----HhcC--C--cEEEEeC----CHHHHHHHHhhcccccccCCCCCcceEEEE---cCC
Q 024811 157 QHLVALDCGSGIGRITKNLL----IRYF--N--EVDLLEP----VSHFLDAARESLAPENHMAPDMHKATNFFC---VPL 221 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La----~~~~--~--~V~~VD~----s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~---~d~ 221 (262)
+.-+|+|+|.|.|.-=..|. .+.. + ++|+|++ +..-++...+++...... .+-...|.. .++
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~---lgv~fef~~v~~~~~ 186 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARS---LGVPFEFHPVVVESL 186 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHH---cCccEEEEecccCch
Confidence 46789999999997444444 2211 1 6899999 888888888877543111 122334443 344
Q ss_pred CCCCCC---CCccchhh--hhhHHhhcCchh------HHHHHHHHHhhccC
Q 024811 222 QDFTPE---TGRYDVIW--VQWCIGHLTDDD------FVSFFKRAKVNHSQ 261 (262)
Q Consensus 222 ~~~~~~---~~~yDlI~--s~~vl~hltD~e------l~~~l~~~~~~LkP 261 (262)
+++.+. ..+-++++ |.+.|||+.++. ...||+.++ .|+|
T Consensus 187 e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P 236 (374)
T PF03514_consen 187 EDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP 236 (374)
T ss_pred hhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC
Confidence 444321 11223333 445689997432 224776555 4555
No 335
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=38.96 E-value=10 Score=29.61 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=12.4
Q ss_pred eeEeeccccHHHHHHH
Q 024811 161 ALDCGSGIGRITKNLL 176 (262)
Q Consensus 161 VLDlGcGtG~lt~~La 176 (262)
-+|||||.|+.-..-.
T Consensus 6 NIDIGcG~GNTmda~f 21 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAF 21 (124)
T ss_pred ccccccCCCcchhhhh
Confidence 5799999999655544
No 336
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=38.48 E-value=63 Score=31.42 Aligned_cols=130 Identities=12% Similarity=0.011 Sum_probs=66.1
Q ss_pred CCCCCcccchh-hHHHHHHHHhhccCCCccCCCCceeeEeeccccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHhhccc-
Q 024811 126 GFGNVNEVDIK-GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP- 202 (262)
Q Consensus 126 Gy~~is~~di~-~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGtG~lt~~La~~~-~~~V~~VD~s~~mld~Ar~~l~~- 202 (262)
.|..++..-+. ...+++..+.++. ..++...-.|+|+|+|.+...++... ...-.|+|.+..--+.|..+...
T Consensus 164 hYk~~ss~~YGE~~~~ql~si~dEl----~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~ 239 (419)
T KOG3924|consen 164 HYKSFSSETYGETQLEQLRSIVDEL----KLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEF 239 (419)
T ss_pred hhccccccchhhhhHHHHHHHHHHh----ccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHH
Confidence 45555555553 2345566665532 24567889999999999988887332 22334665555544444433221
Q ss_pred --ccccCCCCCcceEEEEcCCCCCCCC---CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 203 --ENHMAPDMHKATNFFCVPLQDFTPE---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 203 --a~~~~~~~~~~v~f~~~d~~~~~~~---~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
...+.-.....+..+.+++.+-..- ....++|++|.+ .-|+++..=+.++..-+++|
T Consensus 240 kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~---~Fdp~L~lr~~eil~~ck~g 301 (419)
T KOG3924|consen 240 KKLMKHFGKKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNV---AFDPELKLRSKEILQKCKDG 301 (419)
T ss_pred HHHHHHhCCCcCceeecccccCCHHHHHHHhhcceEEEEecc---cCCHHHHHhhHHHHhhCCCc
Confidence 1111111133456666665532110 135677777764 22444333333444444443
No 337
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.83 E-value=1.4e+02 Score=25.23 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=42.9
Q ss_pred CceeeEeec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC--------
Q 024811 158 HLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-------- 227 (262)
Q Consensus 158 ~~~VLDlGc--GtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~-------- 227 (262)
+.++|=.|+ |+|......+.+.+.+|.+++.++.-++.+.+.+... ..++.++..|+.+....
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL-------GTEVRGYAANVTDEEDVEATFAQIA 77 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 457887775 4555443333345678999998887666655544321 23466777777653110
Q ss_pred --CCccchhhhhh
Q 024811 228 --TGRYDVIWVQW 238 (262)
Q Consensus 228 --~~~yDlI~s~~ 238 (262)
.++.|+|+.+.
T Consensus 78 ~~~~~id~vi~~a 90 (253)
T PRK08217 78 EDFGQLNGLINNA 90 (253)
T ss_pred HHcCCCCEEEECC
Confidence 13567777654
No 338
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=35.86 E-value=56 Score=27.64 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=26.5
Q ss_pred eEeeccc-c-HHHHHHHHhcCCcEEEEeCCHHHHHHHHhhccc
Q 024811 162 LDCGSGI-G-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (262)
Q Consensus 162 LDlGcGt-G-~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~ 202 (262)
.=+|+|+ | .++..++ ..+.+|.++|++++.++.+++++..
T Consensus 3 ~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 3 AVIGAGTMGRGIAALFA-RAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEES-SHHHHHHHHHHH-HTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHHH-hCCCcEEEEECChHHHHhhhhHHHH
Confidence 3456654 2 2344444 5578999999999999999887754
No 339
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=35.78 E-value=68 Score=32.74 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=40.1
Q ss_pred ceeeEeeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCC----CCCCccch
Q 024811 159 LVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDV 233 (262)
Q Consensus 159 ~~VLDlGcGt-G~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~----~~~~~yDl 233 (262)
.+|+=||||. |+.....+.+.+..+.++|.+++.++.+++. ....+.+|..+.+ ..-++.|+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-------------g~~v~~GDat~~~~L~~agi~~A~~ 467 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-------------GMKVFYGDATRMDLLESAGAAKAEV 467 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-------------CCeEEEEeCCCHHHHHhcCCCcCCE
Confidence 4566666653 3333333334466799999999999988763 2356777776542 11246666
Q ss_pred hhhh
Q 024811 234 IWVQ 237 (262)
Q Consensus 234 I~s~ 237 (262)
|++.
T Consensus 468 vvv~ 471 (621)
T PRK03562 468 LINA 471 (621)
T ss_pred EEEE
Confidence 6654
No 340
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=35.51 E-value=92 Score=27.08 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=34.3
Q ss_pred CCCceeeEeeccc-cHHHHHHHHhcCCc-EEEEeCCHHHHHHHHhh
Q 024811 156 NQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARES 199 (262)
Q Consensus 156 ~~~~~VLDlGcGt-G~lt~~La~~~~~~-V~~VD~s~~mld~Ar~~ 199 (262)
.++.+||=.|||. |..+..+++..+.+ |.+++.+++..+.+++.
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~ 141 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL 141 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc
Confidence 4567888888765 77788888666767 99999998888877764
No 341
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=34.72 E-value=87 Score=29.29 Aligned_cols=43 Identities=19% Similarity=0.119 Sum_probs=35.2
Q ss_pred CceeeEeeccc-cHHHHHHHHhcC-CcEEEEeCCHHHHHHHHhhc
Q 024811 158 HLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARESL 200 (262)
Q Consensus 158 ~~~VLDlGcGt-G~lt~~La~~~~-~~V~~VD~s~~mld~Ar~~l 200 (262)
+.+|+=+|||+ |-++..+++..+ .+|.++|.++.-++.|++..
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence 44899999996 777777774443 67889999999999999954
No 342
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=34.27 E-value=65 Score=25.65 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=26.3
Q ss_pred CCceeeEeeccccHHHHHHHH---hc-CCcEEEEeCCHHHHHHHHhh
Q 024811 157 QHLVALDCGSGIGRITKNLLI---RY-FNEVDLLEPVSHFLDAARES 199 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~---~~-~~~V~~VD~s~~mld~Ar~~ 199 (262)
.+.+|+=+||| .++..++. .. +..|.+++.+++-.+...+.
T Consensus 18 ~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~ 62 (155)
T cd01065 18 KGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKAKALAER 62 (155)
T ss_pred CCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 35689999986 34443331 33 46799999988766654443
No 343
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=33.64 E-value=80 Score=30.72 Aligned_cols=42 Identities=21% Similarity=-0.028 Sum_probs=33.8
Q ss_pred CCceeeEeeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHh
Q 024811 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (262)
Q Consensus 157 ~~~~VLDlGcGt-G~lt~~La~~~~~~V~~VD~s~~mld~Ar~ 198 (262)
++.+|+=+|||+ |.....+++..+.+|.++|.++.-++.|+.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 477999999985 777777776667789999999887777765
No 344
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=32.89 E-value=1.1e+02 Score=28.08 Aligned_cols=45 Identities=11% Similarity=-0.106 Sum_probs=34.6
Q ss_pred CCCCceeeEeecc-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhh
Q 024811 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (262)
Q Consensus 155 ~~~~~~VLDlGcG-tG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~ 199 (262)
..++.+||=.|+| .|..+..+++..+.+|.+++.+++-++.|++.
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL 208 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh
Confidence 3457788888854 66677778866677899999999888888774
No 345
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=32.77 E-value=1.1e+02 Score=29.04 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=27.7
Q ss_pred eeeEeeccccHHHHHHHHh---cCCcEEEEeCCHHHHHHHHhh
Q 024811 160 VALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARES 199 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La~~---~~~~V~~VD~s~~mld~Ar~~ 199 (262)
+|+=||| |+++..++.. .+..|.++|.+++-++.+++.
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~ 42 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR 42 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh
Confidence 3555555 7888887743 356899999999988877663
No 346
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=32.28 E-value=44 Score=30.28 Aligned_cols=68 Identities=22% Similarity=0.227 Sum_probs=41.5
Q ss_pred ceeeEeec-cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchhhhh
Q 024811 159 LVALDCGS-GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (262)
Q Consensus 159 ~~VLDlGc-GtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI~s~ 237 (262)
.++|=+|+ =+|......+...+ +|+++|+.|++.+...++ +.|...- ......||+|+=.
T Consensus 43 k~~lI~G~YltG~~iA~~L~~~~-eV~lvDI~p~lk~ll~~~--------------i~F~~~~----~~~~~~~DlIID~ 103 (252)
T PF06690_consen 43 KQALIFGAYLTGNFIASALSKKC-EVTLVDIHPHLKELLNEN--------------IKFMEFR----NGLEGNPDLIIDT 103 (252)
T ss_pred ceEEEEEEEeehHHHHHHhccCc-eEEEEeCcHHHHHHhcCC--------------Cceeecc----CCCCCCCCEEEEC
Confidence 37888883 24444444442445 999999999999887443 4454211 1112578888766
Q ss_pred hHHhhcCc
Q 024811 238 WCIGHLTD 245 (262)
Q Consensus 238 ~vl~hltD 245 (262)
--|+-+++
T Consensus 104 TGlGGv~~ 111 (252)
T PF06690_consen 104 TGLGGVDP 111 (252)
T ss_pred CCCCCCCH
Confidence 55555543
No 347
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=31.81 E-value=49 Score=33.71 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=55.5
Q ss_pred CceeeEeeccccHHHHHHHHhc------CC-------cEEEEeCCH---HHHHHH-----------Hhhccccccc----
Q 024811 158 HLVALDCGSGIGRITKNLLIRY------FN-------EVDLLEPVS---HFLDAA-----------RESLAPENHM---- 206 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~------~~-------~V~~VD~s~---~mld~A-----------r~~l~~a~~~---- 206 (262)
.-+|+|+|=|+|......++.. .+ ++..+|.-| +-+..+ ++.++.....
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4799999999999877777322 11 456667532 222222 2211110000
Q ss_pred ----CCCCCcceEEEEcCCCCCCCC-CCccchhhhhhHHhhcCchhH--HHHHHHHHhhccCC
Q 024811 207 ----APDMHKATNFFCVPLQDFTPE-TGRYDVIWVQWCIGHLTDDDF--VSFFKRAKVNHSQT 262 (262)
Q Consensus 207 ----~~~~~~~v~f~~~d~~~~~~~-~~~yDlI~s~~vl~hltD~el--~~~l~~~~~~LkPG 262 (262)
.....-.++++.+|+.+.-+. ...+|+|+.-. |.=-.++++ ..+|+.++++++||
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~-FsP~~np~~W~~~~~~~l~~~~~~~ 199 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG-FAPAKNPDMWSPNLFNALARLARPG 199 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC-CCCccChhhccHHHHHHHHHHhCCC
Confidence 001112455677887654321 14689887542 111122332 26999999999986
No 348
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=31.36 E-value=24 Score=30.55 Aligned_cols=35 Identities=17% Similarity=0.402 Sum_probs=25.9
Q ss_pred CCccchhhhhhHHhhcCc----------hhHHHHHHHHHhhccCC
Q 024811 228 TGRYDVIWVQWCIGHLTD----------DDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 228 ~~~yDlI~s~~vl~hltD----------~el~~~l~~~~~~LkPG 262 (262)
.++.|+|+.||+|+=++- +.+.+++.+++.+|+|+
T Consensus 48 gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~ 92 (183)
T cd01842 48 GGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIE 92 (183)
T ss_pred CCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCc
Confidence 467899999999876654 33557888888888763
No 349
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=31.13 E-value=1.2e+02 Score=27.24 Aligned_cols=44 Identities=27% Similarity=0.270 Sum_probs=33.7
Q ss_pred CCCCceeeEeecc-ccHHHHHHHHhcCCc-EEEEeCCHHHHHHHHh
Q 024811 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARE 198 (262)
Q Consensus 155 ~~~~~~VLDlGcG-tG~lt~~La~~~~~~-V~~VD~s~~mld~Ar~ 198 (262)
..++.+||-+|+| .|..+..+++..+.+ |.+++.+++..+.+++
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 202 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK 202 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 3457789999876 477888888666666 8889999998888754
No 350
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=30.99 E-value=97 Score=30.51 Aligned_cols=75 Identities=13% Similarity=0.053 Sum_probs=52.1
Q ss_pred CCCCceeeEeeccccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC--CCc
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGR 230 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~~--~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~--~~~ 230 (262)
++++.||||+.|-+|.=|.+++.-.. ..|.+.|.+..-+.....++... +..+.-..+.|..+|+.. .++
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl------Gv~ntiv~n~D~~ef~~~~~~~~ 312 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL------GVTNTIVSNYDGREFPEKEFPGS 312 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh------CCCceEEEccCcccccccccCcc
Confidence 55789999999999999999883332 24677799999999999888653 233444556777666311 125
Q ss_pred cchhh
Q 024811 231 YDVIW 235 (262)
Q Consensus 231 yDlI~ 235 (262)
||=|.
T Consensus 313 fDRVL 317 (460)
T KOG1122|consen 313 FDRVL 317 (460)
T ss_pred cceee
Confidence 76554
No 351
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=30.92 E-value=80 Score=27.85 Aligned_cols=98 Identities=9% Similarity=-0.073 Sum_probs=43.1
Q ss_pred CCceeeEeeccccHHHHHHHH--hcC---CcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC----
Q 024811 157 QHLVALDCGSGIGRITKNLLI--RYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---- 227 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~--~~~---~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~---- 227 (262)
++..|+|+|.=.|.-+...+. ..+ .+|.+||+.-.-.+..... .. . ..++++|+.+|-.+...-
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e--~h-p----~~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIE--SH-P----MSPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGG--G---------TTEEEEES-SSSTHHHHTSG
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHh--hc-c----ccCceEEEECCCCCHHHHHHHH
Confidence 467899999888887766651 222 5799999854333222111 00 0 125799999987654210
Q ss_pred --CCccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 228 --TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 228 --~~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
...++-++...=-+|..+.- ..-|+.+..+++||
T Consensus 105 ~~~~~~~~vlVilDs~H~~~hv-l~eL~~y~plv~~G 140 (206)
T PF04989_consen 105 ELASPPHPVLVILDSSHTHEHV-LAELEAYAPLVSPG 140 (206)
T ss_dssp SS----SSEEEEESS----SSH-HHHHHHHHHT--TT
T ss_pred HhhccCCceEEEECCCccHHHH-HHHHHHhCccCCCC
Confidence 01122222111124554432 35566688888876
No 352
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=30.87 E-value=64 Score=27.17 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=29.9
Q ss_pred EEEcCCCCCCC----CCCccchhhhhhHHhhcC------------chh-HHHHHHHHHhhccCC
Q 024811 216 FFCVPLQDFTP----ETGRYDVIWVQWCIGHLT------------DDD-FVSFFKRAKVNHSQT 262 (262)
Q Consensus 216 f~~~d~~~~~~----~~~~yDlI~s~~vl~hlt------------D~e-l~~~l~~~~~~LkPG 262 (262)
.+..|...+.. ...+||.|+-|++ |.. +.+ +..||+.+..+|+++
T Consensus 57 ~~~VDat~l~~~~~~~~~~FDrIiFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~ 118 (166)
T PF10354_consen 57 LHGVDATKLHKHFRLKNQRFDRIIFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPD 118 (166)
T ss_pred ccCCCCCcccccccccCCcCCEEEEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45666665532 2378999999975 333 122 346999999999873
No 353
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=30.10 E-value=1.3e+02 Score=28.77 Aligned_cols=93 Identities=24% Similarity=0.214 Sum_probs=53.2
Q ss_pred CcccchhhHHHHHHHHhhccCCCccCCCCceeeEeeccc-c-HHHHHHHHhcCCcEEEEeCCHH--------HH------
Q 024811 130 VNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGI-G-RITKNLLIRYFNEVDLLEPVSH--------FL------ 193 (262)
Q Consensus 130 is~~di~~s~~fL~~ll~~~l~~~~~~~~~~VLDlGcGt-G-~lt~~La~~~~~~V~~VD~s~~--------ml------ 193 (262)
+...+++.+..-|+.+.+ .+||=+|+|- | -+.+.|+...|.++.+||++.- ++
T Consensus 23 f~~~~f~~~~e~l~~l~~-----------~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~Di 91 (422)
T KOG2015|consen 23 FNLDAFEPSEENLEFLQD-----------CKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDI 91 (422)
T ss_pred CCCCCCCCCHHHHHHHhh-----------CcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhccccccc
Confidence 334555566666666542 4799999763 2 1445555445777777765421 11
Q ss_pred -----HHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC-Cccchhhhhh
Q 024811 194 -----DAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVIWVQW 238 (262)
Q Consensus 194 -----d~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~-~~yDlI~s~~ 238 (262)
++|.+.+.. +-..-.+.++..++++++++- .+||+|+|..
T Consensus 92 G~pKAqvAA~fvn~-----Rvp~~~v~~h~~kIqd~~~~FYk~F~~iicGL 137 (422)
T KOG2015|consen 92 GEPKAQVAAEFVNR-----RVPGCVVVPHRQKIQDKPISFYKRFDLIICGL 137 (422)
T ss_pred CchhHHHHHHHHHh-----hCCCcEEeeeecchhcCCHHHHhhhceEEecc
Confidence 122222211 112335788899999986531 5799998863
No 354
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.02 E-value=1.4e+02 Score=27.57 Aligned_cols=99 Identities=11% Similarity=0.109 Sum_probs=61.8
Q ss_pred ceeeEeeccccHHHHHHHHhcCCcEEEEeCCHH-HHHHHHhhcccccccCCCCCcceEEEEcCCCC--CC-------CCC
Q 024811 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSH-FLDAARESLAPENHMAPDMHKATNFFCVPLQD--FT-------PET 228 (262)
Q Consensus 159 ~~VLDlGcGtG~lt~~La~~~~~~V~~VD~s~~-mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~--~~-------~~~ 228 (262)
..|+-+|||-=.=+-.|- ....+...|++.. .++.=++.+.+... ......+++..|+.+ |. +..
T Consensus 94 ~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~---~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~ 168 (297)
T COG3315 94 RQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGA---TPPAHRRLVAVDLREDDWPQALAAAGFDR 168 (297)
T ss_pred cEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCC---CCCceEEEEeccccccchHHHHHhcCCCc
Confidence 579999999765444444 1224555666544 44433343432110 011267889999873 21 112
Q ss_pred CccchhhhhhHHhhcCchhHHHHHHHHHhhccCC
Q 024811 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVNHSQT 262 (262)
Q Consensus 229 ~~yDlI~s~~vl~hltD~el~~~l~~~~~~LkPG 262 (262)
..-=++++-.++.||+.++..++|..+...+.||
T Consensus 169 ~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~g 202 (297)
T COG3315 169 SRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPG 202 (297)
T ss_pred CCCeEEEeccccccCCHHHHHHHHHHHHHhCCCC
Confidence 2334566777999999999899999999999887
No 355
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.70 E-value=1.3e+02 Score=29.12 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=24.1
Q ss_pred CceeeEeecc-ccHHHHHHHHhcCCcEEEEeCCHH
Q 024811 158 HLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSH 191 (262)
Q Consensus 158 ~~~VLDlGcG-tG~lt~~La~~~~~~V~~VD~s~~ 191 (262)
+.+|+=+|+| +|.-+..++.+.+.+|+++|.++.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4579999987 555444555467888999996653
No 356
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=29.65 E-value=1.3e+02 Score=27.20 Aligned_cols=44 Identities=20% Similarity=0.065 Sum_probs=35.0
Q ss_pred CCCCceeeEeeccc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHh
Q 024811 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (262)
Q Consensus 155 ~~~~~~VLDlGcGt-G~lt~~La~~~~~~V~~VD~s~~mld~Ar~ 198 (262)
+.++.+||-.|+|. |..+..+++..+.+|.++..+++..+.+++
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~ 201 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARE 201 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHH
Confidence 34577899998874 888888897778889999888888887754
No 357
>PRK08339 short chain dehydrogenase; Provisional
Probab=27.79 E-value=2.4e+02 Score=24.60 Aligned_cols=74 Identities=24% Similarity=0.304 Sum_probs=44.8
Q ss_pred CceeeEeec--cccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--------
Q 024811 158 HLVALDCGS--GIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------- 226 (262)
Q Consensus 158 ~~~VLDlGc--GtG~-lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-------- 226 (262)
+..+|=.|+ |+|. +++.|+ +.+.+|.+++-++.-++...+.+... ...++.++.+|+.+...
T Consensus 8 ~k~~lItGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLA-RAGADVILLSRNEENLKKAREKIKSE------SNVDVSYIVADLTKREDLERTVKEL 80 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhh------cCCceEEEEecCCCHHHHHHHHHHH
Confidence 446677775 5665 445555 56778999998887776666554321 12256777888876421
Q ss_pred -CCCccchhhhhh
Q 024811 227 -ETGRYDVIWVQW 238 (262)
Q Consensus 227 -~~~~yDlI~s~~ 238 (262)
.-+..|+++.+-
T Consensus 81 ~~~g~iD~lv~na 93 (263)
T PRK08339 81 KNIGEPDIFFFST 93 (263)
T ss_pred HhhCCCcEEEECC
Confidence 013577776553
No 358
>PRK05867 short chain dehydrogenase; Provisional
Probab=27.55 E-value=2.4e+02 Score=24.17 Aligned_cols=73 Identities=16% Similarity=0.202 Sum_probs=44.5
Q ss_pred CceeeEeec--cccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC--------
Q 024811 158 HLVALDCGS--GIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------- 226 (262)
Q Consensus 158 ~~~VLDlGc--GtG~-lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~-------- 226 (262)
+.++|=.|+ |+|. +++.|+ +.+.+|.+++-+++-++...+.+... ..++.++.+|+.+...
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYV-EAGAQVAIAARHLDALEKLADEIGTS-------GGKVVPVCCDVSQHQQVTSMLDQV 80 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHHHhc-------CCeEEEEEccCCCHHHHHHHHHHH
Confidence 456888886 4455 344444 56778999988877776665554321 2346677788765421
Q ss_pred --CCCccchhhhhh
Q 024811 227 --ETGRYDVIWVQW 238 (262)
Q Consensus 227 --~~~~yDlI~s~~ 238 (262)
.-++.|+++.+.
T Consensus 81 ~~~~g~id~lv~~a 94 (253)
T PRK05867 81 TAELGGIDIAVCNA 94 (253)
T ss_pred HHHhCCCCEEEECC
Confidence 013678877664
No 359
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=26.90 E-value=93 Score=27.90 Aligned_cols=39 Identities=13% Similarity=-0.009 Sum_probs=27.1
Q ss_pred eeeEeecc--ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhh
Q 024811 160 VALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (262)
Q Consensus 160 ~VLDlGcG--tG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~ 199 (262)
+|-=||+| -+.++..++ ..+.+|.++|++++.++.++++
T Consensus 5 kI~VIG~G~mG~~ia~~la-~~g~~V~~~d~~~~~~~~~~~~ 45 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCA-VAGYDVVMVDISDAAVDRGLAT 45 (282)
T ss_pred EEEEEccCHHHHHHHHHHH-HCCCceEEEeCCHHHHHHHHHH
Confidence 45556776 344555566 4566899999999999866543
No 360
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=26.48 E-value=1.2e+02 Score=27.48 Aligned_cols=41 Identities=20% Similarity=0.171 Sum_probs=31.4
Q ss_pred eeeEeeccc--cHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcc
Q 024811 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (262)
Q Consensus 160 ~VLDlGcGt--G~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~ 201 (262)
+|-=||+|+ +.++..++ ..+.+|++.|.+++.++.+++++.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~~~~~~~~i~ 49 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCA-RAGVDVLVFETTEELATAGRNRIE 49 (286)
T ss_pred EEEEEcccHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHH
Confidence 677788873 44566666 667899999999999998776654
No 361
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=25.91 E-value=2.4e+02 Score=29.40 Aligned_cols=42 Identities=24% Similarity=0.090 Sum_probs=33.6
Q ss_pred ceeeEeeccc--cHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcc
Q 024811 159 LVALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (262)
Q Consensus 159 ~~VLDlGcGt--G~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~ 201 (262)
.+|.=||+|+ ..++..++ ..+.+|.++|.+++.++.+..++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~ 357 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSA-SKGVPVIMKDINQKALDLGMTEAA 357 (715)
T ss_pred ceEEEECCchhHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHH
Confidence 5788899998 45666666 668899999999999998776653
No 362
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=25.76 E-value=1.6e+02 Score=27.31 Aligned_cols=44 Identities=11% Similarity=-0.025 Sum_probs=33.1
Q ss_pred CCCCceeeEeecc-ccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHh
Q 024811 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (262)
Q Consensus 155 ~~~~~~VLDlGcG-tG~lt~~La~~~~~-~V~~VD~s~~mld~Ar~ 198 (262)
..++.+||=.||| .|.++..+++..+. +|.++|.+++-++.+++
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3457788888875 47777778866665 79999999988888765
No 363
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=25.49 E-value=2.6e+02 Score=24.09 Aligned_cols=70 Identities=23% Similarity=0.271 Sum_probs=42.1
Q ss_pred CceeeEeec--cccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-------
Q 024811 158 HLVALDCGS--GIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------- 227 (262)
Q Consensus 158 ~~~VLDlGc--GtG~-lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~------- 227 (262)
+.++|=.|+ |+|. +++.|+ +.+.+|.+++-++..++...+.+. .++.++.+|+.+...-
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~~ 74 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFL-AEGARVAVLERSAEKLASLRQRFG----------DHVLVVEGDVTSYADNQRAVDQT 74 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhC----------CcceEEEccCCCHHHHHHHHHHH
Confidence 456777775 4555 344444 557789999988877665544331 2456677777654210
Q ss_pred ---CCccchhhhhh
Q 024811 228 ---TGRYDVIWVQW 238 (262)
Q Consensus 228 ---~~~yDlI~s~~ 238 (262)
.++.|+++.+-
T Consensus 75 ~~~~g~id~li~~a 88 (263)
T PRK06200 75 VDAFGKLDCFVGNA 88 (263)
T ss_pred HHhcCCCCEEEECC
Confidence 13567777654
No 364
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=25.48 E-value=1.4e+02 Score=22.71 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=34.0
Q ss_pred CceeeEeeccccHHHHHHHHhcCCcE-EEEeCCHHHHHHHHhhccc
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNEV-DLLEPVSHFLDAARESLAP 202 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~V-~~VD~s~~mld~Ar~~l~~ 202 (262)
..-|+|++.|.+..+..++ .....| ..++++...+..+++.+..
T Consensus 44 D~IIiDtpp~~~~~~~~~l-~~aD~vlvvv~~~~~s~~~~~~~~~~ 88 (106)
T cd03111 44 DYVVVDLGRSLDEVSLAAL-DQADRVFLVTQQDLPSIRNAKRLLEL 88 (106)
T ss_pred CEEEEeCCCCcCHHHHHHH-HHcCeEEEEecCChHHHHHHHHHHHH
Confidence 3479999999999999888 545544 5569999888888877654
No 365
>PRK12829 short chain dehydrogenase; Provisional
Probab=25.45 E-value=2.9e+02 Score=23.61 Aligned_cols=58 Identities=16% Similarity=0.089 Sum_probs=34.3
Q ss_pred CCceeeEeeccccHHHHHHH---HhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC
Q 024811 157 QHLVALDCGSGIGRITKNLL---IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La---~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~ 224 (262)
++.++|=.|++ |.++..++ .+.+.+|.+++-++..++...+.... .++.++.+|+.+.
T Consensus 10 ~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~---------~~~~~~~~D~~~~ 70 (264)
T PRK12829 10 DGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG---------AKVTATVADVADP 70 (264)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---------CceEEEEccCCCH
Confidence 35678888763 44444433 24467899998877666554443321 1356677777653
No 366
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=25.41 E-value=1.6e+02 Score=27.13 Aligned_cols=44 Identities=11% Similarity=-0.029 Sum_probs=35.6
Q ss_pred CCCCceeeEeec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHh
Q 024811 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (262)
Q Consensus 155 ~~~~~~VLDlGc--GtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~ 198 (262)
..++.+||=.|+ |.|.++..+++..+.+|.+++.++.-.+.+++
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~ 201 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKN 201 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 345778888886 58999999997778889899999888887763
No 367
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=25.06 E-value=1.7e+02 Score=25.42 Aligned_cols=43 Identities=21% Similarity=0.119 Sum_probs=34.0
Q ss_pred CCCceeeEeec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHh
Q 024811 156 NQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (262)
Q Consensus 156 ~~~~~VLDlGc--GtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~ 198 (262)
.++..||-.|| +.|..+..+++..+.+|.+++.++...+.+++
T Consensus 138 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 182 (323)
T cd08241 138 QPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARA 182 (323)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHH
Confidence 35678999997 68888888887777789999888887777654
No 368
>PRK08267 short chain dehydrogenase; Provisional
Probab=24.80 E-value=2.6e+02 Score=23.99 Aligned_cols=69 Identities=19% Similarity=0.097 Sum_probs=41.7
Q ss_pred eeeEeecc--ccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC----------
Q 024811 160 VALDCGSG--IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---------- 226 (262)
Q Consensus 160 ~VLDlGcG--tG~-lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~---------- 226 (262)
++|=.|++ +|. ++..|+ +.+.+|.+++.++.-++.....+. ..++.++.+|+.+...
T Consensus 3 ~vlItGasg~iG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 3 SIFITGAASGIGRATALLFA-AEGWRVGAYDINEAGLAALAAELG---------AGNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred EEEEeCCCchHHHHHHHHHH-HCCCeEEEEeCCHHHHHHHHHHhc---------CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 46666653 333 334444 456789999988877766655432 1257788888876321
Q ss_pred C-CCccchhhhhh
Q 024811 227 E-TGRYDVIWVQW 238 (262)
Q Consensus 227 ~-~~~yDlI~s~~ 238 (262)
. .++.|+|+.+-
T Consensus 73 ~~~~~id~vi~~a 85 (260)
T PRK08267 73 ATGGRLDVLFNNA 85 (260)
T ss_pred HcCCCCCEEEECC
Confidence 0 24568877654
No 369
>PRK06172 short chain dehydrogenase; Provisional
Probab=24.55 E-value=3.1e+02 Score=23.33 Aligned_cols=73 Identities=19% Similarity=0.127 Sum_probs=43.0
Q ss_pred CceeeEeec--cccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-------
Q 024811 158 HLVALDCGS--GIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------- 227 (262)
Q Consensus 158 ~~~VLDlGc--GtG~-lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~------- 227 (262)
+.+||=.|+ |+|. ++..|+ +.+.+|.+++-++.-++.+.+.+... ..++.++.+|+.+...-
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~i~~~~~~~ 78 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFA-REGAKVVVADRDAAGGEETVALIREA-------GGEALFVACDVTRDAEVKALVEQT 78 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhc-------CCceEEEEcCCCCHHHHHHHHHHH
Confidence 456777775 3343 333344 45678999988877666555544321 23567888888764210
Q ss_pred ---CCccchhhhhh
Q 024811 228 ---TGRYDVIWVQW 238 (262)
Q Consensus 228 ---~~~yDlI~s~~ 238 (262)
-++.|+|+.+.
T Consensus 79 ~~~~g~id~li~~a 92 (253)
T PRK06172 79 IAAYGRLDYAFNNA 92 (253)
T ss_pred HHHhCCCCEEEECC
Confidence 13568887664
No 370
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=24.44 E-value=1.8e+02 Score=26.79 Aligned_cols=44 Identities=16% Similarity=0.020 Sum_probs=32.9
Q ss_pred CCCCceeeEeecc-ccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHh
Q 024811 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (262)
Q Consensus 155 ~~~~~~VLDlGcG-tG~lt~~La~~~~~-~V~~VD~s~~mld~Ar~ 198 (262)
..++.+||=.||| .|..+..+++..+. +|.+++.++.-++.+++
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3457788888874 36677778866665 48999999988888865
No 371
>PRK09242 tropinone reductase; Provisional
Probab=24.42 E-value=3e+02 Score=23.59 Aligned_cols=76 Identities=18% Similarity=0.144 Sum_probs=44.1
Q ss_pred CceeeEeec--cccHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC---------
Q 024811 158 HLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--------- 226 (262)
Q Consensus 158 ~~~VLDlGc--GtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~--------- 226 (262)
+.++|=.|+ |+|......+.+.+.+|.+++-+++-++...+.+.... ....+.++.+|+.+...
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEF-----PEREVHGLAADVSDDEDRRAILDWVE 83 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC-----CCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 456787776 44543333332556789999888777766655543210 12356777888876321
Q ss_pred -CCCccchhhhhh
Q 024811 227 -ETGRYDVIWVQW 238 (262)
Q Consensus 227 -~~~~yDlI~s~~ 238 (262)
.-++.|+|+.+.
T Consensus 84 ~~~g~id~li~~a 96 (257)
T PRK09242 84 DHWDGLHILVNNA 96 (257)
T ss_pred HHcCCCCEEEECC
Confidence 014578777654
No 372
>PRK07063 short chain dehydrogenase; Provisional
Probab=24.21 E-value=3.2e+02 Score=23.48 Aligned_cols=75 Identities=23% Similarity=0.193 Sum_probs=45.3
Q ss_pred CceeeEeec--cccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-------
Q 024811 158 HLVALDCGS--GIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------- 227 (262)
Q Consensus 158 ~~~VLDlGc--GtG~-lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~------- 227 (262)
+.++|=.|+ |+|. +++.|+ +.+.+|.+++-++.-++...+.+... ....++.++.+|+.+...-
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~-~~G~~vv~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFA-REGAAVALADLDAALAERAAAAIARD-----VAGARVLAVPADVTDAASVAAAVAAA 80 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhc-----cCCceEEEEEccCCCHHHHHHHHHHH
Confidence 456887785 4444 444444 55778999998887777666555320 0123567888888764210
Q ss_pred ---CCccchhhhhh
Q 024811 228 ---TGRYDVIWVQW 238 (262)
Q Consensus 228 ---~~~yDlI~s~~ 238 (262)
-++.|.++.+.
T Consensus 81 ~~~~g~id~li~~a 94 (260)
T PRK07063 81 EEAFGPLDVLVNNA 94 (260)
T ss_pred HHHhCCCcEEEECC
Confidence 13577777654
No 373
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=24.12 E-value=1.7e+02 Score=26.89 Aligned_cols=43 Identities=26% Similarity=0.227 Sum_probs=30.8
Q ss_pred CCCceeeEeecc-ccHHHHHHHHh-c-CCcEEEEeCCHHHHHHHHh
Q 024811 156 NQHLVALDCGSG-IGRITKNLLIR-Y-FNEVDLLEPVSHFLDAARE 198 (262)
Q Consensus 156 ~~~~~VLDlGcG-tG~lt~~La~~-~-~~~V~~VD~s~~mld~Ar~ 198 (262)
.++.+||=+||| +|.++..+++. . ..+|.++|.++.-++.|++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 357789989965 34455666644 2 3579999999988888865
No 374
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=24.11 E-value=2.5e+02 Score=23.52 Aligned_cols=93 Identities=23% Similarity=0.268 Sum_probs=47.0
Q ss_pred CceeeEeeccccHHHHHHH---Hh---cCCcEEEEeCCHHHHHHHHhhccccccc--C------CCCCcceEEEEcCCC-
Q 024811 158 HLVALDCGSGIGRITKNLL---IR---YFNEVDLLEPVSHFLDAARESLAPENHM--A------PDMHKATNFFCVPLQ- 222 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La---~~---~~~~V~~VD~s~~mld~Ar~~l~~a~~~--~------~~~~~~v~f~~~d~~- 222 (262)
..++||+-+|.|=..+.|- ++ ...+|.++.|.....+...+.+....-+ . ......++..|....
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~ 84 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYG 84 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHH
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHH
Confidence 3589999999997554333 11 3467889999998888777776532110 0 001112222221100
Q ss_pred C--CCC-CCCccchhhhhhHHhhcCchhHHHHH
Q 024811 223 D--FTP-ETGRYDVIWVQWCIGHLTDDDFVSFF 252 (262)
Q Consensus 223 ~--~~~-~~~~yDlI~s~~vl~hltD~el~~~l 252 (262)
. ..+ .-..||+||+-.+ |++|+.-+.+.
T Consensus 85 ~~~~~p~~~~~yd~II~DEc--H~~Dp~sIA~r 115 (148)
T PF07652_consen 85 HFLLNPCRLKNYDVIIMDEC--HFTDPTSIAAR 115 (148)
T ss_dssp HHHHTSSCTTS-SEEEECTT--T--SHHHHHHH
T ss_pred HHhcCcccccCccEEEEecc--ccCCHHHHhhh
Confidence 0 011 1247999999986 88998733333
No 375
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=24.07 E-value=3.2e+02 Score=23.30 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=36.1
Q ss_pred CceeeEeec--cccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC
Q 024811 158 HLVALDCGS--GIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (262)
Q Consensus 158 ~~~VLDlGc--GtG~-lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~ 224 (262)
+.++|=.|+ |+|. ++..|+ +.+.+|.+++.++...+.+.+.+... ...+.++.+|+.+.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~ 68 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELA-RAGAAVAIADLNQDGANAVADEINKA-------GGKAIGVAMDVTNE 68 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHhc-------CceEEEEECCCCCH
Confidence 346775554 4443 333444 45678999999887776666555321 23467778888764
No 376
>PRK07677 short chain dehydrogenase; Provisional
Probab=24.05 E-value=3e+02 Score=23.50 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=31.9
Q ss_pred eeeEeec--cccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCC
Q 024811 160 VALDCGS--GIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (262)
Q Consensus 160 ~VLDlGc--GtG~-lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~ 223 (262)
++|=.|+ |+|. ++..|+ +.+.+|.+++-++.-++...+.+... ...+.++.+|+.+
T Consensus 3 ~~lItG~s~giG~~ia~~l~-~~G~~Vi~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~ 61 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFA-EEGANVVITGRTKEKLEEAKLEIEQF-------PGQVLTVQMDVRN 61 (252)
T ss_pred EEEEeCCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEecCCC
Confidence 4565565 3444 334444 45678888887776665555444221 1246677777765
No 377
>PRK07454 short chain dehydrogenase; Provisional
Probab=24.01 E-value=3.6e+02 Score=22.75 Aligned_cols=73 Identities=18% Similarity=0.103 Sum_probs=41.7
Q ss_pred CceeeEeeccccHHHHHHHH---hcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-------
Q 024811 158 HLVALDCGSGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------- 227 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~---~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~------- 227 (262)
..++|=.|+ +|.++..+++ +.+.+|.+++-++.-.+...+.+.. ....+.++.+|+.+...-
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS-------TGVKAAAYSIDLSNPEAIAPGIAEL 77 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------CCCcEEEEEccCCCHHHHHHHHHHH
Confidence 346777774 4444444442 4466899998887655444443321 123567788888764310
Q ss_pred ---CCccchhhhhh
Q 024811 228 ---TGRYDVIWVQW 238 (262)
Q Consensus 228 ---~~~yDlI~s~~ 238 (262)
-++.|+|+.+-
T Consensus 78 ~~~~~~id~lv~~a 91 (241)
T PRK07454 78 LEQFGCPDVLINNA 91 (241)
T ss_pred HHHcCCCCEEEECC
Confidence 13467777654
No 378
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=23.98 E-value=1.5e+02 Score=28.51 Aligned_cols=48 Identities=19% Similarity=0.022 Sum_probs=37.0
Q ss_pred cCCCCceeeEeeccccHHHHHHHHhcCC-----cEEEEeCCHHHHHHHHhhcc
Q 024811 154 RNNQHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARESLA 201 (262)
Q Consensus 154 ~~~~~~~VLDlGcGtG~lt~~La~~~~~-----~V~~VD~s~~mld~Ar~~l~ 201 (262)
+..++.+|||+.+-+|.=|..|++..++ .|.+=|.++.-+......+.
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~ 204 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLK 204 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHh
Confidence 4668999999999999999999954442 46777888877776666553
No 379
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=23.59 E-value=1.6e+02 Score=27.21 Aligned_cols=39 Identities=13% Similarity=-0.096 Sum_probs=30.2
Q ss_pred CCCCceeeEeeccccHHHHHHHHhc-CC--cEEEEeCCHHHHH
Q 024811 155 NNQHLVALDCGSGIGRITKNLLIRY-FN--EVDLLEPVSHFLD 194 (262)
Q Consensus 155 ~~~~~~VLDlGcGtG~lt~~La~~~-~~--~V~~VD~s~~mld 194 (262)
+.++.+||=+|++.|+.-.++. +. ++ -|.+||.|+..=.
T Consensus 154 ikpGsKVLYLGAasGttVSHvS-DiVGpeG~VYAVEfs~rsGR 195 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVS-DIVGPEGCVYAVEFSHRSGR 195 (317)
T ss_pred ecCCceEEEeeccCCceeehhh-cccCCCceEEEEEecccchH
Confidence 3468899999999999888888 54 33 4889999876533
No 380
>PRK06181 short chain dehydrogenase; Provisional
Probab=23.33 E-value=3.2e+02 Score=23.40 Aligned_cols=57 Identities=18% Similarity=0.076 Sum_probs=32.3
Q ss_pred eeeEeeccccHHHHHHH---HhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC
Q 024811 160 VALDCGSGIGRITKNLL---IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (262)
Q Consensus 160 ~VLDlGcGtG~lt~~La---~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~ 224 (262)
+||=.|+ +|.++..++ ...+.+|.+++.++.-.+...+.+.. ....+.++.+|+.+.
T Consensus 3 ~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~-------~~~~~~~~~~Dl~~~ 62 (263)
T PRK06181 3 VVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELAD-------HGGEALVVPTDVSDA 62 (263)
T ss_pred EEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------cCCcEEEEEccCCCH
Confidence 4565553 333444333 24467899998887665544444322 123567778888764
No 381
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=23.02 E-value=1.1e+02 Score=27.84 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCcEEEEeCCHHHHHHHHh
Q 024811 171 ITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (262)
Q Consensus 171 lt~~La~~~~~~V~~VD~s~~mld~Ar~ 198 (262)
++..|+ +.+.+|.+.|.++...+.+.+
T Consensus 15 mA~~L~-~~g~~v~v~dr~~~~~~~~~~ 41 (299)
T PRK12490 15 MAERLR-EDGHEVVGYDVNQEAVDVAGK 41 (299)
T ss_pred HHHHHH-hCCCEEEEEECCHHHHHHHHH
Confidence 444444 445678899999877766543
No 382
>PRK12939 short chain dehydrogenase; Provisional
Probab=22.79 E-value=3.6e+02 Score=22.67 Aligned_cols=59 Identities=12% Similarity=0.011 Sum_probs=35.1
Q ss_pred CceeeEeeccccHHHHHHH---HhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC
Q 024811 158 HLVALDCGSGIGRITKNLL---IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La---~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~ 224 (262)
+.++|=.|+ +|.++..++ .+.+.+|.+++-++.-++...+.+... ..++.++.+|+.+.
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~ 68 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA-------GGRAHAIAADLADP 68 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEccCCCH
Confidence 456775664 344444443 244678888887777666555444221 23577888888764
No 383
>PRK08265 short chain dehydrogenase; Provisional
Probab=22.65 E-value=3.3e+02 Score=23.53 Aligned_cols=56 Identities=21% Similarity=0.215 Sum_probs=33.4
Q ss_pred CceeeEeec--cccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC
Q 024811 158 HLVALDCGS--GIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (262)
Q Consensus 158 ~~~VLDlGc--GtG~-lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~ 224 (262)
+.++|=.|+ |+|+ +++.|+ +.+.+|.+++-++.-++...+.+ ...+.++.+|+.+.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dl~~~ 64 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALV-AAGARVAIVDIDADNGAAVAASL----------GERARFIATDITDD 64 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHh----------CCeeEEEEecCCCH
Confidence 456777775 4444 333444 45678999988876554443332 12466777888764
No 384
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=22.43 E-value=95 Score=21.81 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=16.1
Q ss_pred eeccccHHHHH-HHHhcCCcEEEEeCC
Q 024811 164 CGSGIGRITKN-LLIRYFNEVDLLEPV 189 (262)
Q Consensus 164 lGcGtG~lt~~-La~~~~~~V~~VD~s 189 (262)
||+|++.++.. .+.+...+|+++|-+
T Consensus 2 iGaG~sGl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred EeeCHHHHHHHHHHHHCCCcEEEEecC
Confidence 68887665443 333556789999743
No 385
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=22.37 E-value=2.1e+02 Score=25.69 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=31.9
Q ss_pred CCCceeeEeecc-ccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHh
Q 024811 156 NQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (262)
Q Consensus 156 ~~~~~VLDlGcG-tG~lt~~La~~~~~-~V~~VD~s~~mld~Ar~ 198 (262)
.++.+||-.|+| .|..+..+++..+. .|.+++-++...+.+++
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 356788887775 57788888866663 78888888877777665
No 386
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=22.33 E-value=1.3e+02 Score=27.47 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=35.7
Q ss_pred CceeeEeeccccHHHHHHHHhcCCc-EEEEeCCHHHHHHHHhhcccc
Q 024811 158 HLVALDCGSGIGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPE 203 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~~~~~~-V~~VD~s~~mld~Ar~~l~~a 203 (262)
...|+|.=+|.=.+++... +.+.- +.++|||-+.+..|++--..+
T Consensus 135 e~VivDtEAGiEHfgRg~~-~~vD~vivVvDpS~~sl~taeri~~L~ 180 (255)
T COG3640 135 EVVIVDTEAGIEHFGRGTI-EGVDLVIVVVDPSYKSLRTAERIKELA 180 (255)
T ss_pred cEEEEecccchhhhccccc-cCCCEEEEEeCCcHHHHHHHHHHHHHH
Confidence 5689999999999999888 55554 456699999999998765443
No 387
>PRK06194 hypothetical protein; Provisional
Probab=22.32 E-value=3.5e+02 Score=23.62 Aligned_cols=74 Identities=16% Similarity=0.076 Sum_probs=42.8
Q ss_pred CceeeEeec--cccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCC-------
Q 024811 158 HLVALDCGS--GIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------- 227 (262)
Q Consensus 158 ~~~VLDlGc--GtG~-lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~------- 227 (262)
+.+||=.|+ |+|. +++.|+ +.+.+|.+++-++..++...+.+... ..++.++.+|+.+...-
T Consensus 6 ~k~vlVtGasggIG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~~~ 77 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGA-ALGMKLVLADVQQDALDRAVAELRAQ-------GAEVLGVRTDVSDAAQVEALADAA 77 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHH-HCCCEEEEEeCChHHHHHHHHHHHhc-------CCeEEEEECCCCCHHHHHHHHHHH
Confidence 346776664 4443 333444 45778999998877666555444221 22467788888764210
Q ss_pred ---CCccchhhhhhH
Q 024811 228 ---TGRYDVIWVQWC 239 (262)
Q Consensus 228 ---~~~yDlI~s~~v 239 (262)
.++.|+|+.+-.
T Consensus 78 ~~~~g~id~vi~~Ag 92 (287)
T PRK06194 78 LERFGAVHLLFNNAG 92 (287)
T ss_pred HHHcCCCCEEEECCC
Confidence 135688877653
No 388
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=22.05 E-value=1.9e+02 Score=27.04 Aligned_cols=42 Identities=21% Similarity=0.138 Sum_probs=31.6
Q ss_pred ceeeEeeccc--cHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcc
Q 024811 159 LVALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (262)
Q Consensus 159 ~~VLDlGcGt--G~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~ 201 (262)
.+|-=||+|+ ..++..++ ..+.+|.+.|++++.++.++..+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a-~aG~~V~l~D~~~~~~~~~~~~i~ 51 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARAL-AHGLDVVAWDPAPGAEAALRANVA 51 (321)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4677788883 34566666 678899999999999888776553
No 389
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=22.00 E-value=1.8e+02 Score=25.75 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=31.2
Q ss_pred CCceeeEeecc-ccHHHHHHHHhcCCc-EEEEeCCHHHHHHHHh
Q 024811 157 QHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARE 198 (262)
Q Consensus 157 ~~~~VLDlGcG-tG~lt~~La~~~~~~-V~~VD~s~~mld~Ar~ 198 (262)
++.+||=+|+| .|.++..+++..+.+ |.++|.++.-++.+++
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 56788888864 566777777666655 8888999888887765
No 390
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.96 E-value=3.8e+02 Score=22.44 Aligned_cols=58 Identities=7% Similarity=-0.005 Sum_probs=34.5
Q ss_pred CceeeEeeccccHHHHHHH---HhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC
Q 024811 158 HLVALDCGSGIGRITKNLL---IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La---~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~ 224 (262)
+.+||=.|++ |.++..++ .+.+.+|.+++-++.-++.+.+.+.. ..++.++.+|+.+.
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~Dl~~~ 65 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK--------YGNIHYVVGDVSST 65 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------cCCeEEEECCCCCH
Confidence 4578888864 33343333 24467899998887766555443321 12466777777753
No 391
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=21.76 E-value=2.1e+02 Score=24.81 Aligned_cols=64 Identities=9% Similarity=-0.005 Sum_probs=37.1
Q ss_pred CceeeEeeccccH--HHHHHHHhcCCcEEEEeCCHH--HHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccch
Q 024811 158 HLVALDCGSGIGR--ITKNLLIRYFNEVDLLEPVSH--FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (262)
Q Consensus 158 ~~~VLDlGcGtG~--lt~~La~~~~~~V~~VD~s~~--mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDl 233 (262)
+.+||=+|.|.=. -...|+ ..+.+|+++++... ..+.+++ .++.++..+...-.. ..+|+
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll-~~ga~VtVvsp~~~~~l~~l~~~-------------~~i~~~~~~~~~~dl--~~~~l 72 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLL-KAGAQLRVIAEELESELTLLAEQ-------------GGITWLARCFDADIL--EGAFL 72 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHH-HCCCEEEEEcCCCCHHHHHHHHc-------------CCEEEEeCCCCHHHh--CCcEE
Confidence 5689999988632 234455 67889999976532 2222221 146666665543222 35777
Q ss_pred hhhh
Q 024811 234 IWVQ 237 (262)
Q Consensus 234 I~s~ 237 (262)
|++.
T Consensus 73 Vi~a 76 (205)
T TIGR01470 73 VIAA 76 (205)
T ss_pred EEEC
Confidence 6654
No 392
>PRK07904 short chain dehydrogenase; Provisional
Probab=21.55 E-value=3.2e+02 Score=23.67 Aligned_cols=75 Identities=17% Similarity=0.070 Sum_probs=42.6
Q ss_pred CCceeeEeeccccHHHHHHHH---hc-CCcEEEEeCCHHH-HHHHHhhcccccccCCCCCcceEEEEcCCCCCCC-----
Q 024811 157 QHLVALDCGSGIGRITKNLLI---RY-FNEVDLLEPVSHF-LDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----- 226 (262)
Q Consensus 157 ~~~~VLDlGcGtG~lt~~La~---~~-~~~V~~VD~s~~m-ld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~----- 226 (262)
.+.+||=.||+ |.++..+++ +. +.+|.+++-++.- ++.+.+.+... ...++.++.+|+.+...
T Consensus 7 ~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~------~~~~v~~~~~D~~~~~~~~~~~ 79 (253)
T PRK07904 7 NPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAA------GASSVEVIDFDALDTDSHPKVI 79 (253)
T ss_pred CCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhc------CCCceEEEEecCCChHHHHHHH
Confidence 45678888873 444554442 23 3688888766553 55444444321 11257888888876431
Q ss_pred ----CCCccchhhhhh
Q 024811 227 ----ETGRYDVIWVQW 238 (262)
Q Consensus 227 ----~~~~yDlI~s~~ 238 (262)
..+..|+++.+.
T Consensus 80 ~~~~~~g~id~li~~a 95 (253)
T PRK07904 80 DAAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHHhcCCCCEEEEee
Confidence 013678777554
No 393
>PRK07576 short chain dehydrogenase; Provisional
Probab=21.31 E-value=3.6e+02 Score=23.39 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=34.4
Q ss_pred CceeeEeec--cccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCC
Q 024811 158 HLVALDCGS--GIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (262)
Q Consensus 158 ~~~VLDlGc--GtG~-lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~ 223 (262)
+.++|=.|+ |+|. +++.|+ ..+.+|.+++.++.-++...+.+... ...+.++.+|+.+
T Consensus 9 ~k~ilItGasggIG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~ 69 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFA-RAGANVAVASRSQEKVDAAVAQLQQA-------GPEGLGVSADVRD 69 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHHh-------CCceEEEECCCCC
Confidence 456777775 4555 333444 55778999988877665544443221 1234667777765
No 394
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=21.17 E-value=1.1e+02 Score=26.07 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=20.5
Q ss_pred cccHHHHHHH---HhcCCcEEEEeCCHHHHHHHHhh
Q 024811 167 GIGRITKNLL---IRYFNEVDLLEPVSHFLDAARES 199 (262)
Q Consensus 167 GtG~lt~~La---~~~~~~V~~VD~s~~mld~Ar~~ 199 (262)
|.|+++..++ ...+.+|.++|.+++-++...+-
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g 42 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNG 42 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTT
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhc
Confidence 4555554444 24578999999999998887654
No 395
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=21.15 E-value=2.2e+02 Score=25.58 Aligned_cols=43 Identities=21% Similarity=0.122 Sum_probs=32.8
Q ss_pred CCCceeeEeeccc-cHHHHHHHHhcCCc-EEEEeCCHHHHHHHHh
Q 024811 156 NQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARE 198 (262)
Q Consensus 156 ~~~~~VLDlGcGt-G~lt~~La~~~~~~-V~~VD~s~~mld~Ar~ 198 (262)
.++.+||-.|+|. |..+..+++..+.+ |.+++.++...+.+++
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~ 202 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE 202 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 3567888888766 77888888666666 8899888888777654
No 396
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=20.95 E-value=2e+02 Score=29.85 Aligned_cols=44 Identities=14% Similarity=-0.060 Sum_probs=33.1
Q ss_pred CceeeEeeccc--cHHHHHHHHhcCCcEEEEeCCHHHHHHHHhhcc
Q 024811 158 HLVALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (262)
Q Consensus 158 ~~~VLDlGcGt--G~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~ 201 (262)
-.+|.=||+|+ ..++..++...+..|.++|++++.++.+..++.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~ 354 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSW 354 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH
Confidence 46788899988 445555553557789999999999998876653
No 397
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=20.93 E-value=2.2e+02 Score=26.26 Aligned_cols=45 Identities=18% Similarity=0.008 Sum_probs=32.9
Q ss_pred CCCCceeeEeecc-ccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHhh
Q 024811 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARES 199 (262)
Q Consensus 155 ~~~~~~VLDlGcG-tG~lt~~La~~~~~-~V~~VD~s~~mld~Ar~~ 199 (262)
..++.+||=.|+| +|.++..+++..+. +|.++|.++.-++.+++.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~ 235 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL 235 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc
Confidence 3456677778864 46677777866665 699999999998888763
No 398
>PLN02740 Alcohol dehydrogenase-like
Probab=20.80 E-value=2.2e+02 Score=26.55 Aligned_cols=44 Identities=9% Similarity=-0.036 Sum_probs=32.5
Q ss_pred CCCCceeeEeecc-ccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHh
Q 024811 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (262)
Q Consensus 155 ~~~~~~VLDlGcG-tG~lt~~La~~~~~-~V~~VD~s~~mld~Ar~ 198 (262)
..++.+||=+||| .|.++..+++..+. +|.++|.++.-++.+++
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 4457788888865 46666677755665 69999999988888865
No 399
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=20.75 E-value=57 Score=26.08 Aligned_cols=76 Identities=17% Similarity=0.165 Sum_probs=41.8
Q ss_pred CCceeeEeecc-ccHHH-HHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCCCccchh
Q 024811 157 QHLVALDCGSG-IGRIT-KNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (262)
Q Consensus 157 ~~~~VLDlGcG-tG~lt-~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~~~yDlI 234 (262)
++.+||=+|+| .|+.. ..|+.....+|+++.-+.+-.+...+.+. ...+.+. ++.++......+|+|
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~---------~~~~~~~--~~~~~~~~~~~~Div 79 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG---------GVNIEAI--PLEDLEEALQEADIV 79 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT---------GCSEEEE--EGGGHCHHHHTESEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC---------cccccee--eHHHHHHHHhhCCeE
Confidence 46789999975 34433 33443334569999877655444444431 1133443 334443112479999
Q ss_pred hhhhHHhhc
Q 024811 235 WVQWCIGHL 243 (262)
Q Consensus 235 ~s~~vl~hl 243 (262)
++.-+..+.
T Consensus 80 I~aT~~~~~ 88 (135)
T PF01488_consen 80 INATPSGMP 88 (135)
T ss_dssp EE-SSTTST
T ss_pred EEecCCCCc
Confidence 987655443
No 400
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=20.73 E-value=4.5e+02 Score=22.05 Aligned_cols=59 Identities=19% Similarity=0.078 Sum_probs=34.3
Q ss_pred CceeeEeeccccHHHHHHHH---hcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC
Q 024811 158 HLVALDCGSGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La~---~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~ 224 (262)
+.+||=.|+ +|.++..+++ +.+.+|.+++-++.-+......+.. ...++.++.+|+.+.
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-------~~~~~~~~~~Dl~~~ 67 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEA-------AGGKARARQVDVRDR 67 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------cCCeEEEEECCCCCH
Confidence 456887775 3444444432 4466898998776555444443321 123477888888763
No 401
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=20.57 E-value=4e+02 Score=22.45 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=34.2
Q ss_pred CceeeEeeccccHHHHHHH---HhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCC
Q 024811 158 HLVALDCGSGIGRITKNLL---IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (262)
Q Consensus 158 ~~~VLDlGcGtG~lt~~La---~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~ 224 (262)
+.++|=.|+ +|.++..++ .+.+.+|.+++-++...+.....+.. ...++.++.+|+.+.
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~ 64 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRA-------KGGNAQAFACDITDR 64 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHh-------cCCcEEEEEcCCCCH
Confidence 346777774 233343333 24466899998887666555444422 123567778887653
No 402
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=20.56 E-value=1.3e+02 Score=24.51 Aligned_cols=63 Identities=17% Similarity=0.118 Sum_probs=32.7
Q ss_pred CceeeEeeccccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCCCC-Cccchhh
Q 024811 158 HLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVIW 235 (262)
Q Consensus 158 ~~~VLDlGcGtG~-lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~~~-~~yDlI~ 235 (262)
..+|+|+|-|-=. ++..|. +.+-.|.++|..+. .|+ ..++|+.-|+.+-..+- ...|+|+
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~-~~G~dV~~tDi~~~---~a~--------------~g~~~v~DDif~P~l~iY~~a~lIY 75 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLK-ERGFDVIATDINPR---KAP--------------EGVNFVVDDIFNPNLEIYEGADLIY 75 (127)
T ss_dssp SSEEEEET-TT--HHHHHHH-HHS-EEEEE-SS-S---------------------STTEE---SSS--HHHHTTEEEEE
T ss_pred CCcEEEECcCCCHHHHHHHH-HcCCcEEEEECccc---ccc--------------cCcceeeecccCCCHHHhcCCcEEE
Confidence 5599999988755 445555 67778999999887 222 14567777777532210 3567777
Q ss_pred hhh
Q 024811 236 VQW 238 (262)
Q Consensus 236 s~~ 238 (262)
|--
T Consensus 76 SiR 78 (127)
T PF03686_consen 76 SIR 78 (127)
T ss_dssp EES
T ss_pred EeC
Confidence 653
No 403
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=20.50 E-value=1.6e+02 Score=21.43 Aligned_cols=16 Identities=6% Similarity=-0.163 Sum_probs=8.2
Q ss_pred CchhHHHHHHHHHhhc
Q 024811 244 TDDDFVSFFKRAKVNH 259 (262)
Q Consensus 244 tD~el~~~l~~~~~~L 259 (262)
++.+..+..+++..+|
T Consensus 74 ~~~d~~~i~~~I~~~~ 89 (89)
T cd05566 74 TGIGEDKVYEEILEAL 89 (89)
T ss_pred ccCChHHHHHHHHHhC
Confidence 4445445555555443
No 404
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=20.48 E-value=2.4e+02 Score=25.27 Aligned_cols=44 Identities=5% Similarity=-0.099 Sum_probs=35.3
Q ss_pred CCCCceeeEee--ccccHHHHHHHHhcCCcEEEEeCCHHHHHHHHh
Q 024811 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (262)
Q Consensus 155 ~~~~~~VLDlG--cGtG~lt~~La~~~~~~V~~VD~s~~mld~Ar~ 198 (262)
..++.+||=.| .|.|..+..+++..+.+|.+++.+++-.+.+++
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~ 181 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK 181 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 34577888887 468999999997778789889988888887765
No 405
>PRK06125 short chain dehydrogenase; Provisional
Probab=20.40 E-value=4.2e+02 Score=22.72 Aligned_cols=74 Identities=18% Similarity=0.162 Sum_probs=42.0
Q ss_pred CceeeEeec--cccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHhhcccccccCCCCCcceEEEEcCCCCCCC------CC
Q 024811 158 HLVALDCGS--GIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------ET 228 (262)
Q Consensus 158 ~~~VLDlGc--GtG~-lt~~La~~~~~~V~~VD~s~~mld~Ar~~l~~a~~~~~~~~~~v~f~~~d~~~~~~------~~ 228 (262)
+.++|=.|+ |.|. ++..|+ +.+.+|.+++-++..++.+.+.+... ...++.++..|+.+... .-
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFA-AEGCHLHLVARDADALEALAADLRAA------HGVDVAVHALDLSSPEAREQLAAEA 79 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhh------cCCceEEEEecCCCHHHHHHHHHHh
Confidence 446777775 3444 233344 45668999998887776655544321 12245677777765311 11
Q ss_pred Cccchhhhhh
Q 024811 229 GRYDVIWVQW 238 (262)
Q Consensus 229 ~~yDlI~s~~ 238 (262)
++.|++|.+.
T Consensus 80 g~id~lv~~a 89 (259)
T PRK06125 80 GDIDILVNNA 89 (259)
T ss_pred CCCCEEEECC
Confidence 4677777654
No 406
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=20.34 E-value=1.9e+02 Score=26.01 Aligned_cols=40 Identities=28% Similarity=0.349 Sum_probs=28.8
Q ss_pred eeeEeeccc-c-HHHHHHHHhcCCcEEEEeCCHHHHHHHHhhc
Q 024811 160 VALDCGSGI-G-RITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (262)
Q Consensus 160 ~VLDlGcGt-G-~lt~~La~~~~~~V~~VD~s~~mld~Ar~~l 200 (262)
+|.=||||. | .++..++ ..+.+|.++|.+++.++.+++.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~i 46 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFA-RTGYDVTIVDVSEEILKNAMELI 46 (291)
T ss_pred EEEEECccHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHH
Confidence 566678872 3 3555555 55678999999999998876644
No 407
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=20.34 E-value=94 Score=32.19 Aligned_cols=35 Identities=14% Similarity=-0.014 Sum_probs=25.1
Q ss_pred CCCceeeEeeccccHHHHHHHHhc--CCcEEEEeCCH
Q 024811 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVS 190 (262)
Q Consensus 156 ~~~~~VLDlGcGtG~lt~~La~~~--~~~V~~VD~s~ 190 (262)
.+...|||+||.+|....-..+.. +.-|.+||+.|
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 356789999999999887766333 33467777654
No 408
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=20.19 E-value=3e+02 Score=23.69 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=21.2
Q ss_pred CceeeEeecccc-H-HHHHHHHhcCCcEEEEeCC
Q 024811 158 HLVALDCGSGIG-R-ITKNLLIRYFNEVDLLEPV 189 (262)
Q Consensus 158 ~~~VLDlGcGtG-~-lt~~La~~~~~~V~~VD~s 189 (262)
+.+||=+|+|.= . .+..|+ ..+.+|++|++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll-~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLL-KYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHH-HCCCeEEEEcCC
Confidence 568999998742 2 344555 567889999653
Done!