Query 024815
Match_columns 262
No_of_seqs 299 out of 1552
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:37:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 1.1E-37 2.4E-42 284.9 12.2 140 1-149 224-370 (372)
2 PTZ00203 cathepsin L protease; 100.0 7.9E-36 1.7E-40 279.2 16.0 139 1-148 193-338 (348)
3 cd02698 Peptidase_C1A_Cathepsi 100.0 1.5E-35 3.2E-40 264.0 16.1 144 2-149 77-237 (239)
4 KOG1543 Cysteine proteinase Ca 100.0 8.9E-36 1.9E-40 276.7 14.7 141 1-149 179-323 (325)
5 PTZ00021 falcipain-2; Provisio 100.0 6.2E-36 1.4E-40 289.1 13.5 144 1-150 333-488 (489)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 1.3E-35 2.9E-40 264.4 13.8 140 2-148 79-240 (243)
7 PTZ00200 cysteine proteinase; 100.0 1.9E-35 4.1E-40 284.1 14.4 143 1-151 302-446 (448)
8 cd02248 Peptidase_C1A Peptidas 100.0 7.3E-35 1.6E-39 252.1 15.8 139 2-148 69-210 (210)
9 cd02620 Peptidase_C1A_Cathepsi 100.0 9.9E-35 2.2E-39 258.2 14.9 137 2-146 75-234 (236)
10 PF00112 Peptidase_C1: Papain 100.0 5.2E-34 1.1E-38 246.4 11.2 144 2-149 72-219 (219)
11 PTZ00364 dipeptidyl-peptidase 100.0 1.1E-31 2.5E-36 262.3 15.9 146 1-156 284-464 (548)
12 PTZ00049 cathepsin C-like prot 100.0 7E-32 1.5E-36 267.3 14.6 143 2-151 463-677 (693)
13 PTZ00462 Serine-repeat antigen 100.0 3.4E-28 7.4E-33 247.4 14.2 145 3-153 604-784 (1004)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 4.9E-28 1.1E-32 209.3 12.9 128 2-131 72-213 (223)
15 smart00645 Pept_C1 Papain fami 99.9 3.6E-27 7.7E-32 200.8 11.2 97 2-144 70-169 (174)
16 KOG4296 Epithelin/granulin [Si 99.9 1.2E-27 2.6E-32 177.2 6.0 82 172-253 1-82 (90)
17 KOG1544 Predicted cysteine pro 99.9 1.5E-25 3.2E-30 203.8 8.4 138 1-145 281-455 (470)
18 smart00277 GRAN Granulin. 99.9 8.6E-23 1.9E-27 139.4 3.4 51 173-229 1-51 (51)
19 PF00396 Granulin: Granulin; 99.7 7.1E-19 1.5E-23 116.6 2.5 43 183-231 1-43 (43)
20 cd00585 Peptidase_C1B Peptidas 99.7 9.5E-17 2.1E-21 154.2 8.6 88 41-130 286-399 (437)
21 COG4870 Cysteine protease [Pos 99.6 1.8E-15 3.9E-20 140.4 7.1 77 54-132 226-315 (372)
22 PF03051 Peptidase_C1_2: Pepti 98.9 3E-09 6.6E-14 102.7 9.6 85 43-129 289-399 (438)
23 COG3579 PepC Aminopeptidase C 96.7 0.00061 1.3E-08 63.7 0.9 75 52-128 297-400 (444)
24 PF13529 Peptidase_C39_2: Pept 95.9 0.041 8.8E-07 43.3 7.3 58 49-115 86-144 (144)
25 PF14399 Transpep_BrtH: NlpC/p 90.9 0.69 1.5E-05 42.2 6.7 55 52-113 78-133 (317)
26 COG4990 Uncharacterized protei 87.4 1.3 2.8E-05 38.3 5.3 52 45-116 116-168 (195)
27 PF05543 Peptidase_C47: Stapho 78.8 8.2 0.00018 33.2 6.7 62 51-129 90-153 (175)
28 cd00044 CysPc Calpains, domain 77.3 12 0.00025 34.7 7.9 26 92-117 236-263 (315)
29 KOG4128 Bleomycin hydrolases a 75.2 0.32 6.9E-06 45.8 -3.0 76 51-128 305-412 (457)
30 cd02549 Peptidase_C39A A sub-f 71.6 12 0.00025 29.5 5.7 44 55-115 70-114 (141)
31 PF09778 Guanylate_cyc_2: Guan 70.3 14 0.00031 32.7 6.3 59 51-113 112-180 (212)
32 PF14625 Lustrin_cystein: Lust 63.2 7 0.00015 25.4 2.3 21 167-187 14-34 (45)
33 PF07829 Toxin_14: Alpha-A con 62.2 3.1 6.7E-05 24.0 0.4 10 198-207 1-11 (26)
34 PF12385 Peptidase_C70: Papain 43.7 53 0.0011 28.0 5.0 38 51-103 97-135 (166)
35 smart00289 WR1 Worm-specific r 42.4 24 0.00052 21.7 2.2 21 167-187 11-31 (38)
36 PF01640 Peptidase_C10: Peptid 42.2 1E+02 0.0023 26.3 6.9 30 92-126 163-192 (192)
37 smart00230 CysPc Calpain-like 28.9 1E+02 0.0022 28.6 5.0 26 92-117 228-255 (318)
38 KOG2675 Adenylate cyclase-asso 27.3 33 0.00072 33.6 1.4 9 94-102 143-151 (480)
39 PF00648 Peptidase_C2: Calpain 22.3 85 0.0019 28.4 3.1 27 91-117 213-243 (298)
40 TIGR02608 delta_60_rpt delta-6 22.3 2.7E+02 0.0059 19.2 5.2 12 117-128 42-53 (55)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-37 Score=284.88 Aligned_cols=140 Identities=39% Similarity=0.778 Sum_probs=122.3
Q ss_pred ChHHHHHHHHcCCCCCCCCCCcccCCC-CccCCCCCceEEEEeeeeeCCCchHHHHHHHHH-cCCeEEEEeccccccccc
Q 024815 1 MDYAFEFIIDNGGIDTEEDYPYKAIDG-SCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA-NQPVSVAIEGGGMAFQLY 78 (262)
Q Consensus 1 ~~~A~~yl~~~gGi~~E~~YPY~~~~~-~C~~~~~~~~~~~i~~y~~v~~~~~~~lk~al~-~GPV~v~i~a~~~~f~~Y 78 (262)
|++||+|+++.+||..|++|||++..+ .|...+ ...++.|.+|..++. +|++|.+.|. +|||+|+|++. .+|+|
T Consensus 224 ~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~-~~~~v~I~~f~~l~~-nE~~ia~wLv~~GPi~vgiNa~--~mQ~Y 299 (372)
T KOG1542|consen 224 MDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDK-SKIVVSIKDFSMLSN-NEDQIAAWLVTFGPLSVGINAK--PMQFY 299 (372)
T ss_pred hhHHHHHHHHhCCccccccCCccccCCCccccch-hhceEEEeccEecCC-CHHHHHHHHHhcCCeEEEEchH--HHHHh
Confidence 679999988889999999999999987 998764 566789999999987 5666666555 69999999974 79999
Q ss_pred cCcEEec---cCCCC-CCeEEEEEEeeeeC-CeEEEEEECCCCCCCCCCceEEEecccCCCccCceeeeceeccee
Q 024815 79 ESGIFTG---RCGTS-LDHGVTAVGYGTEN-GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 149 (262)
Q Consensus 79 ~sGIy~~---~c~~~-~~HaVliVGYg~~~-G~~YWIVkNSWGt~WGe~GY~rI~rg~~~~~~g~CgI~~~~~yp~ 149 (262)
++||+.+ .|+.. +||+|||||||.++ .++|||||||||++|||+||+||.||. |.|||+.+++-+.
T Consensus 300 rgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~-----N~CGi~~mvss~~ 370 (372)
T KOG1542|consen 300 RGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGS-----NACGIADMVSSAA 370 (372)
T ss_pred cccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccc-----cccccccchhhhh
Confidence 9999987 68765 79999999999987 899999999999999999999999994 5799998876543
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=7.9e-36 Score=279.20 Aligned_cols=139 Identities=36% Similarity=0.723 Sum_probs=114.7
Q ss_pred ChHHHHHHHHc--CCCCCCCCCCcccCCC---CccCCCCCceEEEEeeeeeCCCchHHHHHHHHHc-CCeEEEEeccccc
Q 024815 1 MDYAFEFIIDN--GGIDTEEDYPYKAIDG---SCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMA 74 (262)
Q Consensus 1 ~~~A~~yl~~~--gGi~~E~~YPY~~~~~---~C~~~~~~~~~~~i~~y~~v~~~~~~~lk~al~~-GPV~v~i~a~~~~ 74 (262)
+..||+|++++ +||.+|++|||++.++ .|.........+++++|..+.. ++++|+++|++ |||+|+|++. +
T Consensus 193 ~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~-~e~~~~~~l~~~GPv~v~i~a~--~ 269 (348)
T PTZ00203 193 MLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMES-SERVMAAWLAKNGPISIAVDAS--S 269 (348)
T ss_pred HHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCc-CHHHHHHHHHhCCCEEEEEEhh--h
Confidence 35799999864 6799999999998876 5864322223467889988876 66788888874 9999999984 7
Q ss_pred cccccCcEEeccCC-CCCCeEEEEEEeeeeCCeEEEEEECCCCCCCCCCceEEEecccCCCccCceeeeceecce
Q 024815 75 FQLYESGIFTGRCG-TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 148 (262)
Q Consensus 75 f~~Y~sGIy~~~c~-~~~~HaVliVGYg~~~G~~YWIVkNSWGt~WGe~GY~rI~rg~~~~~~g~CgI~~~~~yp 148 (262)
|++|++|||+. |. ..+||||+|||||+++|++|||||||||++|||+|||||+||. |.|||++.+...
T Consensus 270 f~~Y~~GIy~~-c~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~-----n~Cgi~~~~~~~ 338 (348)
T PTZ00203 270 FMSYHSGVLTS-CIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGV-----NACLLTGYPVSV 338 (348)
T ss_pred hcCccCceeec-cCCCCCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCC-----CcccccceEEEE
Confidence 99999999985 64 4579999999999988999999999999999999999999984 579998766553
No 3
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=1.5e-35 Score=263.97 Aligned_cols=144 Identities=28% Similarity=0.616 Sum_probs=116.4
Q ss_pred hHHHHHHHHcCCCCCCCCCCcccCCCCccCCC--------------CCceEEEEeeeeeCCCchHHHHHHHH-HcCCeEE
Q 024815 2 DYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYR--------------KNAKVVTIDDYEDVPLNDEKALQKAV-ANQPVSV 66 (262)
Q Consensus 2 ~~A~~yl~~~gGi~~E~~YPY~~~~~~C~~~~--------------~~~~~~~i~~y~~v~~~~~~~lk~al-~~GPV~v 66 (262)
..||+|++++ ||++|++|||.+.++.|.... +....+++++|..+. ++++||++| .+|||+|
T Consensus 77 ~~a~~~~~~~-Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v 153 (239)
T cd02698 77 GGVYEYAHKH-GIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISC 153 (239)
T ss_pred HHHHHHHHHc-CcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEE
Confidence 5799999876 899999999998777675211 123356788888775 355677666 4699999
Q ss_pred EEeccccccccccCcEEecc-CCCCCCeEEEEEEeeeeC-CeEEEEEECCCCCCCCCCceEEEecccCCCccCceeeece
Q 024815 67 AIEGGGMAFQLYESGIFTGR-CGTSLDHGVTAVGYGTEN-GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 144 (262)
Q Consensus 67 ~i~a~~~~f~~Y~sGIy~~~-c~~~~~HaVliVGYg~~~-G~~YWIVkNSWGt~WGe~GY~rI~rg~~~~~~g~CgI~~~ 144 (262)
+|++. .+|+.|++|||+.. |...++|||+|||||+++ |++|||||||||++|||+|||||+|+......+.|||+++
T Consensus 154 ~i~~~-~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~ 232 (239)
T cd02698 154 GIMAT-EALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEED 232 (239)
T ss_pred EEEec-ccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccc
Confidence 99997 48999999999874 455679999999999876 9999999999999999999999999962222478999999
Q ss_pred eccee
Q 024815 145 ASYPI 149 (262)
Q Consensus 145 ~~yp~ 149 (262)
+.|+.
T Consensus 233 ~~~~~ 237 (239)
T cd02698 233 CAWAD 237 (239)
T ss_pred eEEEe
Confidence 88864
No 4
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-36 Score=276.67 Aligned_cols=141 Identities=53% Similarity=0.985 Sum_probs=122.5
Q ss_pred ChHHHHHHHHcCCCCCCCCCCcccCCCCccCCCCCceEEEEeeeeeCCCchHHHHHHHHHc-CCeEEEEecccccccccc
Q 024815 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYE 79 (262)
Q Consensus 1 ~~~A~~yl~~~gGi~~E~~YPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~lk~al~~-GPV~v~i~a~~~~f~~Y~ 79 (262)
|..||+|++++|++.+|++|||.+.++.|..... ...+.+.++..++.+ +++|+++|++ |||+|+|++.. +|++|+
T Consensus 179 ~~~A~~yi~~~G~~t~~~~Ypy~~~~~~C~~~~~-~~~~~~~~~~~~~~~-e~~i~~~v~~~GPv~v~~~a~~-~F~~Y~ 255 (325)
T KOG1543|consen 179 PKNAFKYIKKNGGVTECENYPYIGKDGTCKSNKK-DKTVTIKGFYNVPAN-EEAIAEAVAKNGPVSVAIDAYE-DFSLYK 255 (325)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCcCCCCCccCCCc-cceeEeeeeeecCcC-HHHHHHHHHhcCCeEEEEeehh-hhhhcc
Confidence 5789999999965555999999999999987654 566788889888876 7888888875 89999999985 999999
Q ss_pred CcEEeccCCC--CCCeEEEEEEeeeeCCeEEEEEECCCCCCCCCCceEEEecccCCCccCceeeeceecc-ee
Q 024815 80 SGIFTGRCGT--SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY-PI 149 (262)
Q Consensus 80 sGIy~~~c~~--~~~HaVliVGYg~~~G~~YWIVkNSWGt~WGe~GY~rI~rg~~~~~~g~CgI~~~~~y-p~ 149 (262)
+|||++.+.. .++|||+|||||+.++.+|||||||||+.|||+|||||.|+++ .|+|++.+.| |+
T Consensus 256 ~GVy~~~~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~-----~~~I~~~~~~~p~ 323 (325)
T KOG1543|consen 256 GGVYAEEKGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGVN-----KCGIASEASYGPI 323 (325)
T ss_pred CceEeCCCCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCCC-----chhhhcccccCCC
Confidence 9999986544 5899999999999667899999999999999999999999965 5889998888 54
No 5
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=6.2e-36 Score=289.11 Aligned_cols=144 Identities=39% Similarity=0.770 Sum_probs=122.4
Q ss_pred ChHHHHHHHHcCCCCCCCCCCcccCC-CCccCCCCCceEEEEeeeeeCCCchHHHHHHHHHc-CCeEEEEeccccccccc
Q 024815 1 MDYAFEFIIDNGGIDTEEDYPYKAID-GSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLY 78 (262)
Q Consensus 1 ~~~A~~yl~~~gGi~~E~~YPY~~~~-~~C~~~~~~~~~~~i~~y~~v~~~~~~~lk~al~~-GPV~v~i~a~~~~f~~Y 78 (262)
+..||+|+++++||++|++|||++.. +.|... .....++|++|..++ +++|+++|+. |||+|+|++. .+|++|
T Consensus 333 ~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~-~~~~~~~i~~y~~i~---~~~lk~al~~~GPVsv~i~a~-~~f~~Y 407 (489)
T PTZ00021 333 IPNAFEDMIELGGLCSEDDYPYVSDTPELCNID-RCKEKYKIKSYVSIP---EDKFKEAIRFLGPISVSIAVS-DDFAFY 407 (489)
T ss_pred hHhhhhhhhhccccCcccccCccCCCCCccccc-cccccceeeeEEEec---HHHHHHHHHhcCCeEEEEEee-cccccC
Confidence 35799999888899999999999874 789753 233457899998885 4678888875 9999999996 589999
Q ss_pred cCcEEeccCCCCCCeEEEEEEeeeeCC----------eEEEEEECCCCCCCCCCceEEEecccCCCccCceeeeceecce
Q 024815 79 ESGIFTGRCGTSLDHGVTAVGYGTENG----------ADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 148 (262)
Q Consensus 79 ~sGIy~~~c~~~~~HaVliVGYg~~~G----------~~YWIVkNSWGt~WGe~GY~rI~rg~~~~~~g~CgI~~~~~yp 148 (262)
++|||+..|+..++|||+|||||++++ .+|||||||||++|||+|||||+|+.+.. .|.|||++.+.||
T Consensus 408 kgGIy~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~-~n~CGI~t~a~yP 486 (489)
T PTZ00021 408 KGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGL-MKTCSLGTEAYVP 486 (489)
T ss_pred CCCcCCCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCC-CCCCCCcccceeE
Confidence 999999888877899999999997632 47999999999999999999999986432 5789999999999
Q ss_pred ee
Q 024815 149 IK 150 (262)
Q Consensus 149 ~~ 150 (262)
+.
T Consensus 487 ~~ 488 (489)
T PTZ00021 487 LI 488 (489)
T ss_pred ec
Confidence 85
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=1.3e-35 Score=264.43 Aligned_cols=140 Identities=36% Similarity=0.693 Sum_probs=111.3
Q ss_pred hHHHHHHHHcCCCCCCCCCCccc-CCCCccCCCCCceEEEEeeeeeCC----CchHHHHHHHHH-cCCeEEEEecccccc
Q 024815 2 DYAFEFIIDNGGIDTEEDYPYKA-IDGSCDTYRKNAKVVTIDDYEDVP----LNDEKALQKAVA-NQPVSVAIEGGGMAF 75 (262)
Q Consensus 2 ~~A~~yl~~~gGi~~E~~YPY~~-~~~~C~~~~~~~~~~~i~~y~~v~----~~~~~~lk~al~-~GPV~v~i~a~~~~f 75 (262)
.+||+|++++ ||++|++|||++ ..+.|.........+++..|..+. ..++++||++|. +|||+++|++. ++|
T Consensus 79 ~~a~~~~~~~-Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~-~~F 156 (243)
T cd02621 79 FLVGKFAEDF-GIVTEDYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVY-SDF 156 (243)
T ss_pred HHHHHHHHhc-CcCCCceeCCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEec-ccc
Confidence 4789999876 899999999998 678897543122233444444431 246778888876 59999999997 689
Q ss_pred ccccCcEEecc-----CCC---------CCCeEEEEEEeeeeC--CeEEEEEECCCCCCCCCCceEEEecccCCCccCce
Q 024815 76 QLYESGIFTGR-----CGT---------SLDHGVTAVGYGTEN--GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKC 139 (262)
Q Consensus 76 ~~Y~sGIy~~~-----c~~---------~~~HaVliVGYg~~~--G~~YWIVkNSWGt~WGe~GY~rI~rg~~~~~~g~C 139 (262)
++|++|||+.. |.. ..+|||+|||||+++ |++|||||||||++|||+|||||+|+. +.|
T Consensus 157 ~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~-----~~c 231 (243)
T cd02621 157 DFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGT-----NEC 231 (243)
T ss_pred cccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCC-----ccc
Confidence 99999999764 532 368999999999876 899999999999999999999999984 579
Q ss_pred eeeceecce
Q 024815 140 GIAMEASYP 148 (262)
Q Consensus 140 gI~~~~~yp 148 (262)
||++.+.+.
T Consensus 232 gi~~~~~~~ 240 (243)
T cd02621 232 GIESQAVFA 240 (243)
T ss_pred CcccceEee
Confidence 999887543
No 7
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=1.9e-35 Score=284.11 Aligned_cols=143 Identities=39% Similarity=0.727 Sum_probs=121.9
Q ss_pred ChHHHHHHHHcCCCCCCCCCCcccCCCCccCCCCCceEEEEeeeeeCCCchHHHHHHHHHcCCeEEEEeccccccccccC
Q 024815 1 MDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYES 80 (262)
Q Consensus 1 ~~~A~~yl~~~gGi~~E~~YPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~lk~al~~GPV~v~i~a~~~~f~~Y~s 80 (262)
+..||+|++++ ||++|++|||++.++.|.... ...+.|.+|..+. ..++|++++++|||+|+|++. .+|++|++
T Consensus 302 ~~~A~~yi~~~-Gi~~e~~YPY~~~~~~C~~~~--~~~~~i~~y~~~~--~~~~l~~~l~~GPV~v~i~~~-~~f~~Yk~ 375 (448)
T PTZ00200 302 PDTALEYVKNK-GLSSSSDVPYLAKDGKCVVSS--TKKVYIDSYLVAK--GKDVLNKSLVISPTVVYIAVS-RELLKYKS 375 (448)
T ss_pred HHHHHHHHhhc-CccccccCCCCCCCCCCcCCC--CCeeEecceEecC--HHHHHHHHHhcCCEEEEeecc-cccccCCC
Confidence 35899999776 999999999999999997543 2345688887664 356788888889999999996 68999999
Q ss_pred cEEeccCCCCCCeEEEEEEeee--eCCeEEEEEECCCCCCCCCCceEEEecccCCCccCceeeeceecceeec
Q 024815 81 GIFTGRCGTSLDHGVTAVGYGT--ENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKK 151 (262)
Q Consensus 81 GIy~~~c~~~~~HaVliVGYg~--~~G~~YWIVkNSWGt~WGe~GY~rI~rg~~~~~~g~CgI~~~~~yp~~~ 151 (262)
|||+..|+..++|||+|||||. ++|.+|||||||||++|||+|||||+|+.. +.|.|||++.+.||+..
T Consensus 376 GIy~~~C~~~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~--g~n~CGI~~~~~~P~~~ 446 (448)
T PTZ00200 376 GVYNGECGKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNE--GTDKCGILTVGLTPVFY 446 (448)
T ss_pred CccccccCCCCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCCC--CCCcCCccccceeeEEe
Confidence 9998888777899999999985 468899999999999999999999999742 25789999999999863
No 8
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=7.3e-35 Score=252.07 Aligned_cols=139 Identities=55% Similarity=1.032 Sum_probs=120.1
Q ss_pred hHHHHHHHHcCCCCCCCCCCcccCCCCccCCCCCceEEEEeeeeeCCCchHHHHHHHHHc-CCeEEEEeccccccccccC
Q 024815 2 DYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYES 80 (262)
Q Consensus 2 ~~A~~yl~~~gGi~~E~~YPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~lk~al~~-GPV~v~i~a~~~~f~~Y~s 80 (262)
..||+|+.++ ||++|++|||......|.... ....++|.+|..+...++++||++|.+ |||+++|.+. ++|+.|++
T Consensus 69 ~~a~~~~~~~-Gi~~e~~yPY~~~~~~C~~~~-~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~y~~ 145 (210)
T cd02248 69 DNAFEYVKNG-GLASESDYPYTGKDGTCKYNS-SKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDAS-SSFQFYKG 145 (210)
T ss_pred HHhHHHHHHC-CcCccccCCccCCCCCccCCC-CcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecC-cccccCCC
Confidence 4789988766 999999999999888897643 356689999999987668889999976 8999999996 58999999
Q ss_pred cEEeccCC--CCCCeEEEEEEeeeeCCeEEEEEECCCCCCCCCCceEEEecccCCCccCceeeeceecce
Q 024815 81 GIFTGRCG--TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 148 (262)
Q Consensus 81 GIy~~~c~--~~~~HaVliVGYg~~~G~~YWIVkNSWGt~WGe~GY~rI~rg~~~~~~g~CgI~~~~~yp 148 (262)
|||+.... ...+|||+|||||++.+.+|||||||||+.||++|||||+|+. +.|||+..+.||
T Consensus 146 Giy~~~~~~~~~~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~-----~~cgi~~~~~~~ 210 (210)
T cd02248 146 GIYSGPCCSNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGS-----NLCGIASYASYP 210 (210)
T ss_pred CceeCCCCCCCcCCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCC-----CccCceeeeecC
Confidence 99987443 4568999999999988999999999999999999999999984 579999887765
No 9
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=9.9e-35 Score=258.20 Aligned_cols=137 Identities=33% Similarity=0.631 Sum_probs=109.7
Q ss_pred hHHHHHHHHcCCCCCCCCCCcccCCCC------------------ccCCCC---CceEEEEeeeeeCCCchHHHHHHHHH
Q 024815 2 DYAFEFIIDNGGIDTEEDYPYKAIDGS------------------CDTYRK---NAKVVTIDDYEDVPLNDEKALQKAVA 60 (262)
Q Consensus 2 ~~A~~yl~~~gGi~~E~~YPY~~~~~~------------------C~~~~~---~~~~~~i~~y~~v~~~~~~~lk~al~ 60 (262)
..||+||+++ ||++|++|||++.+.. |..... ....+++..+..+.. ++++||++|.
T Consensus 75 ~~a~~~i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~-~~~~ik~~l~ 152 (236)
T cd02620 75 DAAWKYLTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVPS-DETDIMKEIM 152 (236)
T ss_pred HHHHHHHHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeCC-HHHHHHHHHH
Confidence 5799999877 8999999999986543 432211 112345556666653 6778888776
Q ss_pred -cCCeEEEEeccccccccccCcEEeccCCC-CCCeEEEEEEeeeeCCeEEEEEECCCCCCCCCCceEEEecccCCCccCc
Q 024815 61 -NQPVSVAIEGGGMAFQLYESGIFTGRCGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGK 138 (262)
Q Consensus 61 -~GPV~v~i~a~~~~f~~Y~sGIy~~~c~~-~~~HaVliVGYg~~~G~~YWIVkNSWGt~WGe~GY~rI~rg~~~~~~g~ 138 (262)
+|||+|+|++. ++|+.|++|||+..+.. ..+|||+|||||+++|++|||||||||++|||+|||||+|+. +.
T Consensus 153 ~~GPv~v~i~~~-~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~-----~~ 226 (236)
T cd02620 153 TNGPVQAAFTVY-EDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGS-----NE 226 (236)
T ss_pred HCCCeEEEEEec-hhhhhcCCcEEeecCCCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccC-----cc
Confidence 59999999995 68999999999875544 458999999999989999999999999999999999999984 57
Q ss_pred eeeeceec
Q 024815 139 CGIAMEAS 146 (262)
Q Consensus 139 CgI~~~~~ 146 (262)
|||++++.
T Consensus 227 cgi~~~~~ 234 (236)
T cd02620 227 CGIESEVV 234 (236)
T ss_pred ccccccee
Confidence 99998764
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=5.2e-34 Score=246.38 Aligned_cols=144 Identities=43% Similarity=0.812 Sum_probs=121.1
Q ss_pred hHHHHHHHHcCCCCCCCCCCcccCC-CCccCCCCCceEEEEeeeeeCCCchHHHHHHHHHc-CCeEEEEecccccccccc
Q 024815 2 DYAFEFIIDNGGIDTEEDYPYKAID-GSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYE 79 (262)
Q Consensus 2 ~~A~~yl~~~gGi~~E~~YPY~~~~-~~C~~~~~~~~~~~i~~y~~v~~~~~~~lk~al~~-GPV~v~i~a~~~~f~~Y~ 79 (262)
.+||+|++++.||++|++|||.... ..|.........+++..|..+...++++||++|.+ |||+++|.+...+|+.|+
T Consensus 72 ~~a~~~~~~~~Gi~~e~~~pY~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~ 151 (219)
T PF00112_consen 72 FDALKYIKNNNGIVTEEDYPYNGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYK 151 (219)
T ss_dssp HHHHHHHHHHTSBEBTTTS--SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEE
T ss_pred cccceeecccCcccccccccccccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeecccccccccc
Confidence 5799999984599999999999887 68976533333578999999887678899999987 999999999854699999
Q ss_pred CcEEecc-CCC-CCCeEEEEEEeeeeCCeEEEEEECCCCCCCCCCceEEEecccCCCccCceeeeceeccee
Q 024815 80 SGIFTGR-CGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 149 (262)
Q Consensus 80 sGIy~~~-c~~-~~~HaVliVGYg~~~G~~YWIVkNSWGt~WGe~GY~rI~rg~~~~~~g~CgI~~~~~yp~ 149 (262)
+|||+.. +.. ..+|||+|||||++.+++|||||||||++||++|||||+|+.+ ++|||+.+++||+
T Consensus 152 ~gi~~~~~~~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~----~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 152 SGIYDPPDCSNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYN----NECGIESQAVYPI 219 (219)
T ss_dssp SSEECSTSSSSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSS----SGGGTTSSEEEEE
T ss_pred ceeeeccccccccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCC----CcCccCceeeecC
Confidence 9999874 553 5699999999999999999999999999999999999999864 3799999999986
No 11
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=99.97 E-value=1.1e-31 Score=262.31 Aligned_cols=146 Identities=27% Similarity=0.499 Sum_probs=110.3
Q ss_pred ChHHHHHHHHcCCCCCCCCC--CcccCCC---CccCCCCCceEE------EEeeeeeCCCchHHHHHHHHH-cCCeEEEE
Q 024815 1 MDYAFEFIIDNGGIDTEEDY--PYKAIDG---SCDTYRKNAKVV------TIDDYEDVPLNDEKALQKAVA-NQPVSVAI 68 (262)
Q Consensus 1 ~~~A~~yl~~~gGi~~E~~Y--PY~~~~~---~C~~~~~~~~~~------~i~~y~~v~~~~~~~lk~al~-~GPV~v~i 68 (262)
+..||+|++++ ||++|++| ||++.++ .|+.... ...+ .|.+|..+.. ++++|+++|. +|||+|+|
T Consensus 284 p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~~~-~~~y~~~~~~~I~gyy~~~~-~e~~I~~eI~~~GPVsVaI 360 (548)
T PTZ00364 284 PEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTRRP-SRRYYFTNYGPLGGYYGAVT-DPDEIIWEIYRHGPVPASV 360 (548)
T ss_pred HHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCCcc-cceeeeeeeEEecceeecCC-cHHHHHHHHHHcCCeEEEE
Confidence 46799999776 99999999 9998766 4865332 2222 3444544443 5666776665 59999999
Q ss_pred eccccccccccCcEEec---------cC-----------CCCCCeEEEEEEeee-eCCeEEEEEECCCCC--CCCCCceE
Q 024815 69 EGGGMAFQLYESGIFTG---------RC-----------GTSLDHGVTAVGYGT-ENGADYWIVKNSWGS--SWGEAGYI 125 (262)
Q Consensus 69 ~a~~~~f~~Y~sGIy~~---------~c-----------~~~~~HaVliVGYg~-~~G~~YWIVkNSWGt--~WGe~GY~ 125 (262)
++. .+|+.|++|||.. .| ...+||||+|||||+ ++|.+|||||||||+ +|||+|||
T Consensus 361 da~-~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYf 439 (548)
T PTZ00364 361 YAN-SDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTR 439 (548)
T ss_pred Eec-hHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeE
Confidence 997 5789999998752 11 134699999999997 478999999999999 99999999
Q ss_pred EEecccCCCccCceeeeceecceeecCCCCC
Q 024815 126 RMERNVAGTLTGKCGIAMEASYPIKKGQNPP 156 (262)
Q Consensus 126 rI~rg~~~~~~g~CgI~~~~~yp~~~~~~p~ 156 (262)
||+||. |.|||++++..... .|.|+
T Consensus 440 RI~RG~-----N~CGIes~~v~~~~-~~~~~ 464 (548)
T PTZ00364 440 KIARGV-----NAYNIESEVVVMYW-APYPD 464 (548)
T ss_pred EEEcCC-----Ccccccceeeeeee-ecCCC
Confidence 999984 57999998764333 45543
No 12
>PTZ00049 cathepsin C-like protein; Provisional
Probab=99.97 E-value=7e-32 Score=267.29 Aligned_cols=143 Identities=28% Similarity=0.586 Sum_probs=110.9
Q ss_pred hHHHHHHHHcCCCCCCCCCCcccCCCCccCCCCC--------------------------------------ceEEEEee
Q 024815 2 DYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKN--------------------------------------AKVVTIDD 43 (262)
Q Consensus 2 ~~A~~yl~~~gGi~~E~~YPY~~~~~~C~~~~~~--------------------------------------~~~~~i~~ 43 (262)
..||+|++++ ||++|++|||++..+.|...... ...+.+++
T Consensus 463 ~~A~kya~~~-GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~y~k~ 541 (693)
T PTZ00049 463 YLVSKMAKLQ-GIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPARWYAKD 541 (693)
T ss_pred HHHHHHHHHC-CCCcCCccCCcCCCCCCCCCCCCccccccccccccccccccccccccccccccccccccccccceeeee
Confidence 5799999776 99999999999988888542110 11233455
Q ss_pred eeeCC-------CchHHHHHHHHH-cCCeEEEEeccccccccccCcEEec-------cCCC---------------CCCe
Q 024815 44 YEDVP-------LNDEKALQKAVA-NQPVSVAIEGGGMAFQLYESGIFTG-------RCGT---------------SLDH 93 (262)
Q Consensus 44 y~~v~-------~~~~~~lk~al~-~GPV~v~i~a~~~~f~~Y~sGIy~~-------~c~~---------------~~~H 93 (262)
|..|. .+++++|+++|. +|||+|+|++. .+|++|++|||+. .|.. .++|
T Consensus 542 y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~e~~NH 620 (693)
T PTZ00049 542 YNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWEKVNH 620 (693)
T ss_pred eEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCccccCcccccccccCCccccccccccccccccCce
Confidence 65553 135666676665 69999999996 6899999999974 2531 3599
Q ss_pred EEEEEEeeee--CCe--EEEEEECCCCCCCCCCceEEEecccCCCccCceeeeceecceeec
Q 024815 94 GVTAVGYGTE--NGA--DYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKK 151 (262)
Q Consensus 94 aVliVGYg~~--~G~--~YWIVkNSWGt~WGe~GY~rI~rg~~~~~~g~CgI~~~~~yp~~~ 151 (262)
||+|||||++ +|. +|||||||||++|||+|||||+||. |.|||++++.|+..+
T Consensus 621 AVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~-----N~CGIEs~a~~~~pd 677 (693)
T PTZ00049 621 AIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGK-----NFSGIESQSLFIEPD 677 (693)
T ss_pred EEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCC-----CccCCccceeEEeee
Confidence 9999999975 464 7999999999999999999999995 579999999887643
No 13
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=99.95 E-value=3.4e-28 Score=247.39 Aligned_cols=145 Identities=26% Similarity=0.492 Sum_probs=108.3
Q ss_pred HHHHHHHHcCCCCCCCCCCccc--CCCCccCCCC-----------------CceEEEEeeeeeCCCc----h----HHHH
Q 024815 3 YAFEFIIDNGGIDTEEDYPYKA--IDGSCDTYRK-----------------NAKVVTIDDYEDVPLN----D----EKAL 55 (262)
Q Consensus 3 ~A~~yl~~~gGi~~E~~YPY~~--~~~~C~~~~~-----------------~~~~~~i~~y~~v~~~----~----~~~l 55 (262)
.+++|+++++||++|++|||.+ ..+.|..... ....+.+.+|..+... + +++|
T Consensus 604 efl~yI~e~GgLptESdYPYt~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~I 683 (1004)
T PTZ00462 604 EFLQIIEDNGFLPADSNYLYNYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKII 683 (1004)
T ss_pred HHHHHHHHcCCCcccccCCCccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHH
Confidence 4568888887899999999986 4567864211 0113345667666432 1 3578
Q ss_pred HHHHHc-CCeEEEEeccccccccc-cCcEEe-ccCCC-CCCeEEEEEEeeee-----CCeEEEEEECCCCCCCCCCceEE
Q 024815 56 QKAVAN-QPVSVAIEGGGMAFQLY-ESGIFT-GRCGT-SLDHGVTAVGYGTE-----NGADYWIVKNSWGSSWGEAGYIR 126 (262)
Q Consensus 56 k~al~~-GPV~v~i~a~~~~f~~Y-~sGIy~-~~c~~-~~~HaVliVGYg~~-----~G~~YWIVkNSWGt~WGe~GY~r 126 (262)
+++|++ |||+|+|++. +|+.| ++|||. ..|+. .++|||+|||||++ ++++|||||||||+.|||+||||
T Consensus 684 K~eI~~kGPVaV~IdAs--df~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFK 761 (1004)
T PTZ00462 684 KDEIMNKGSVIAYIKAE--NVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFK 761 (1004)
T ss_pred HHHHHhcCCEEEEEEee--hHHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEE
Confidence 888875 9999999985 58888 589864 46864 57999999999974 25799999999999999999999
Q ss_pred EecccCCCccCceeeeceecceeecCC
Q 024815 127 MERNVAGTLTGKCGIAMEASYPIKKGQ 153 (262)
Q Consensus 127 I~rg~~~~~~g~CgI~~~~~yp~~~~~ 153 (262)
|+|+. .+.|||.....+++....
T Consensus 762 I~r~g----~n~CGin~i~t~~~fn~d 784 (1004)
T PTZ00462 762 VDMYG----PSHCEDNFIHSVVIFNID 784 (1004)
T ss_pred EEeCC----CCCCccchheeeeeEeec
Confidence 99843 457999887777776643
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=99.95 E-value=4.9e-28 Score=209.30 Aligned_cols=128 Identities=34% Similarity=0.520 Sum_probs=105.3
Q ss_pred hHHHH-HHHHcCCCCCCCCCCcccCCCCccCC---CCCceEEEEeeeeeCCCchHHHHHHHHHc-CCeEEEEeccccccc
Q 024815 2 DYAFE-FIIDNGGIDTEEDYPYKAIDGSCDTY---RKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQ 76 (262)
Q Consensus 2 ~~A~~-yl~~~gGi~~E~~YPY~~~~~~C~~~---~~~~~~~~i~~y~~v~~~~~~~lk~al~~-GPV~v~i~a~~~~f~ 76 (262)
..|+. +++++ ||++|++|||......|... ......+++..|..+...++++||++|.+ |||+++|.+. ..|.
T Consensus 72 ~~~~~~~~~~~-Gi~~e~~~Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~-~~~~ 149 (223)
T cd02619 72 LSALLKLVALK-GIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVY-SGFD 149 (223)
T ss_pred HHHHHHHHHHc-CCCccccCCCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcc-cchh
Confidence 35776 66555 99999999999987776532 23345678999999987778999999986 8999999987 6899
Q ss_pred cccCcEEe-----c-cC-CCCCCeEEEEEEeeeeC--CeEEEEEECCCCCCCCCCceEEEeccc
Q 024815 77 LYESGIFT-----G-RC-GTSLDHGVTAVGYGTEN--GADYWIVKNSWGSSWGEAGYIRMERNV 131 (262)
Q Consensus 77 ~Y~sGIy~-----~-~c-~~~~~HaVliVGYg~~~--G~~YWIVkNSWGt~WGe~GY~rI~rg~ 131 (262)
.|++|+|. . .+ ....+|||+|||||++. +++|||||||||+.||++||+||.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 150 RLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred cccCccccccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 99999862 1 22 23468999999999886 899999999999999999999999874
No 15
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=99.94 E-value=3.6e-27 Score=200.82 Aligned_cols=97 Identities=59% Similarity=1.172 Sum_probs=82.8
Q ss_pred hHHHHHHHHcCCCCCCCCCCcccCCCCccCCCCCceEEEEeeeeeCCCchHHHHHHHHHcCCeEEEEeccccccccccCc
Q 024815 2 DYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESG 81 (262)
Q Consensus 2 ~~A~~yl~~~gGi~~E~~YPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~lk~al~~GPV~v~i~a~~~~f~~Y~sG 81 (262)
..|++|+++++||++|++|||+. ++.+.+. +|++|++|
T Consensus 70 ~~a~~~~~~~~Gi~~e~~~PY~~----------------------------------------~~~~~~~--~f~~Y~~G 107 (174)
T smart00645 70 DNAFEYIKKNGGLETESCYPYTG----------------------------------------SVAIDAS--DFQFYKSG 107 (174)
T ss_pred HHHHHHHHHcCCcccccccCccc----------------------------------------EEEEEcc--cccCCcCe
Confidence 57999998766899999999986 5666654 59999999
Q ss_pred EEec-cCCCC-CCeEEEEEEeeee-CCeEEEEEECCCCCCCCCCceEEEecccCCCccCceeeece
Q 024815 82 IFTG-RCGTS-LDHGVTAVGYGTE-NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 144 (262)
Q Consensus 82 Iy~~-~c~~~-~~HaVliVGYg~~-~G~~YWIVkNSWGt~WGe~GY~rI~rg~~~~~~g~CgI~~~ 144 (262)
||+. .|... .+|+|+|||||++ +|++|||||||||+.|||+|||||.|+. .+.|+|+..
T Consensus 108 i~~~~~~~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~----~~~c~i~~~ 169 (174)
T smart00645 108 IYDHPGCGSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGK----NNECGIEAS 169 (174)
T ss_pred EECCCCCCCCcccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCC----CCccCceee
Confidence 9987 46543 6999999999987 8999999999999999999999999984 257999554
No 16
>KOG4296 consensus Epithelin/granulin [Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-27 Score=177.19 Aligned_cols=82 Identities=52% Similarity=1.423 Sum_probs=78.7
Q ss_pred CCCccccCCCCceeeeccCCCcccccccccCCCceecCCCcccCCCCCCcccCCCCeeeCCCCCCccchhhhccCCcccc
Q 024815 172 CDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYW 251 (262)
Q Consensus 172 c~~~~~Cp~~~TCc~~~~~~~~c~~~~Ccp~~~avcc~d~~hCcp~g~~~C~~~~~~c~~~~~~~~~~~~~~~~~a~~~~ 251 (262)
||.+++||+++|||++.+.+++|..|||||++.||||.|+.||||++||+||+..++|++..++++.+..++|.||.+.+
T Consensus 1 Cd~~~~Cp~~~TCCcl~e~~~~cfsWgCCp~e~A~CCdD~~hCCPh~ypVCD~~~~~Cl~k~ns~~sikal~kkpA~~~~ 80 (90)
T KOG4296|consen 1 CDSYTECPDSETCCCLYEYGGYCFSWGCCPMESAVCCDDRSHCCPHGYPVCDLQRSTCLMKKNSPTSIKALKKKPAIKTL 80 (90)
T ss_pred CCcceecCCCCceEEeeecCceeceeccccCCcceeecCCCccCCCCCcccccccceeeccCCCcccchhhccCCccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred cc
Q 024815 252 AH 253 (262)
Q Consensus 252 ~~ 253 (262)
..
T Consensus 81 ~~ 82 (90)
T KOG4296|consen 81 ER 82 (90)
T ss_pred cc
Confidence 54
No 17
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=99.92 E-value=1.5e-25 Score=203.75 Aligned_cols=138 Identities=28% Similarity=0.588 Sum_probs=110.0
Q ss_pred ChHHHHHHHHcCCCCCCCCCCcccCC----CCc------------------cCCCC-CceEEEEeeeeeCCCchHHHHHH
Q 024815 1 MDYAFEFIIDNGGIDTEEDYPYKAID----GSC------------------DTYRK-NAKVVTIDDYEDVPLNDEKALQK 57 (262)
Q Consensus 1 ~~~A~~yl~~~gGi~~E~~YPY~~~~----~~C------------------~~~~~-~~~~~~i~~y~~v~~~~~~~lk~ 57 (262)
+++||-||.+. ||+.+.+|||.+.+ +.| ..... +..+++.+.-..|+++++++|++
T Consensus 281 lDRAWWYlRKr-GvVsdhCYP~~~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVSSnE~eImkE 359 (470)
T KOG1544|consen 281 LDRAWWYLRKR-GVVSDHCYPFSGDQAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVSSNEKEIMKE 359 (470)
T ss_pred ccchheeeecc-cccccccccccCCCCCCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeeccCCHHHHHHH
Confidence 47899998766 99999999998732 223 22111 12456677667788888999999
Q ss_pred HHHcCCeEEEEeccccccccccCcEEeccCC---------CCCCeEEEEEEeeeeC---C--eEEEEEECCCCCCCCCCc
Q 024815 58 AVANQPVSVAIEGGGMAFQLYESGIFTGRCG---------TSLDHGVTAVGYGTEN---G--ADYWIVKNSWGSSWGEAG 123 (262)
Q Consensus 58 al~~GPV~v~i~a~~~~f~~Y~sGIy~~~c~---------~~~~HaVliVGYg~~~---G--~~YWIVkNSWGt~WGe~G 123 (262)
++.+|||-+.|.+ +++|+.|++|||++... ....|+|.|.|||++. | .+|||..||||+.|||+|
T Consensus 360 lM~NGPVQA~m~V-HEDFF~YkgGiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~G 438 (470)
T KOG1544|consen 360 LMENGPVQALMEV-HEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERG 438 (470)
T ss_pred HHhCCChhhhhhh-hhhhhhhccceeeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCc
Confidence 9999999999988 48999999999986321 1347999999999873 3 589999999999999999
Q ss_pred eEEEecccCCCccCceeeecee
Q 024815 124 YIRMERNVAGTLTGKCGIAMEA 145 (262)
Q Consensus 124 Y~rI~rg~~~~~~g~CgI~~~~ 145 (262)
||||.||+| +|-|++..
T Consensus 439 YFriLRGvN-----ecdIEsfv 455 (470)
T KOG1544|consen 439 YFRILRGVN-----ECDIESFV 455 (470)
T ss_pred eEEEecccc-----chhhhHhh
Confidence 999999964 69998754
No 18
>smart00277 GRAN Granulin.
Probab=99.86 E-value=8.6e-23 Score=139.39 Aligned_cols=51 Identities=51% Similarity=1.357 Sum_probs=48.3
Q ss_pred CCccccCCCCceeeeccCCCcccccccccCCCceecCCCcccCCCCCCcccCCCCee
Q 024815 173 DNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTC 229 (262)
Q Consensus 173 ~~~~~Cp~~~TCc~~~~~~~~c~~~~Ccp~~~avcc~d~~hCcp~g~~~C~~~~~~c 229 (262)
|++++||+++|||++.+ +.||||||++||||+|++||||+|| +||++.++|
T Consensus 1 d~~~~Cp~~~TCC~~~~-----g~wgCCP~~~AvCC~D~~hCCP~gy-~Cd~~~~~C 51 (51)
T smart00277 1 DSATSCPDGTTCCLLPQ-----GSWGCCPLPNAVCCEDGIHCCPHGY-HCDTDGGTC 51 (51)
T ss_pred CCcccCCCCCeEcCCCC-----CCEECCCCCCCCccCCCCccCCCCC-eeCCCCCcC
Confidence 56899999999999998 7999999999999999999999999 999998876
No 19
>PF00396 Granulin: Granulin; InterPro: IPR000118 Metazoan granulins [] are a family of cysteine-rich peptides of about 6 Kd which may have multiple biological activity. A precursor protein (known as acrogranin) potentially encodes seven different forms of granulin (grnA to grnG) which are probably released by post-translational proteolytic processing. Granulins are evolutionary related to a PMP-D1, a peptide extracted from the pars intercerebralis of migratory locusts []. A schematic representation of the structure of a granulin is shown below: xxxCxxxxxCxxxxxCCxxxxxxxxCCxxxxxxCCxxxxxCCxxxxxCxxxxxxCx 'C': conserved cysteine probably involved in a disulphide bond. In plants a granulin domain is often associated with the C terminus of cysteine proteases belong to the MEROPS peptidase family C1, subfamily C1A (papain).; PDB: 1I8Y_A 1QGM_A 1I8X_A 2JYT_A 2JYU_A 1FWO_A 2JYV_A 2JYE_A 1G26_A.
Probab=99.74 E-value=7.1e-19 Score=116.59 Aligned_cols=43 Identities=44% Similarity=1.229 Sum_probs=40.0
Q ss_pred ceeeeccCCCcccccccccCCCceecCCCcccCCCCCCcccCCCCeeeC
Q 024815 183 TCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLM 231 (262)
Q Consensus 183 TCc~~~~~~~~c~~~~Ccp~~~avcc~d~~hCcp~g~~~C~~~~~~c~~ 231 (262)
|||++.+ +.|+||||++||||+|+.||||+|| +||++.++|+|
T Consensus 1 TCC~~~~-----g~~~CCP~~~avCC~D~~hCCP~G~-~C~~~~~~C~k 43 (43)
T PF00396_consen 1 TCCKTPS-----GGYGCCPYPNAVCCSDGKHCCPHGY-TCDPDGGSCIK 43 (43)
T ss_dssp EEEE-TT-----SSEEEEETSSSTTSSTTTTSSSTTS-EEECTTTEEES
T ss_pred CCcccCC-----CCccccCCCCCCccCCCCccCCCcC-EECCCCCEEcC
Confidence 8999888 7899999999999999999999999 99999999986
No 20
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.67 E-value=9.5e-17 Score=154.24 Aligned_cols=88 Identities=27% Similarity=0.488 Sum_probs=66.9
Q ss_pred EeeeeeCCCchHHHHH-HHHHc-CCeEEEEeccccccccccCcEEecc---------------------C-CCCCCeEEE
Q 024815 41 IDDYEDVPLNDEKALQ-KAVAN-QPVSVAIEGGGMAFQLYESGIFTGR---------------------C-GTSLDHGVT 96 (262)
Q Consensus 41 i~~y~~v~~~~~~~lk-~al~~-GPV~v~i~a~~~~f~~Y~sGIy~~~---------------------c-~~~~~HaVl 96 (262)
...|.+++.++...+. ++|.. +||.+++++. .|+.|++||++.. + ....+|||+
T Consensus 286 ~~~y~Nvp~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ 363 (437)
T cd00585 286 PILYLNVPMDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMV 363 (437)
T ss_pred cceEEecCHHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEE
Confidence 3456777543332222 46666 5999999996 4779999999643 1 234589999
Q ss_pred EEEeeee-CCe-EEEEEECCCCCCCCCCceEEEecc
Q 024815 97 AVGYGTE-NGA-DYWIVKNSWGSSWGEAGYIRMERN 130 (262)
Q Consensus 97 iVGYg~~-~G~-~YWIVkNSWGt~WGe~GY~rI~rg 130 (262)
||||+.+ +|+ .||+||||||+.||++|||+|+++
T Consensus 364 ivGv~~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 364 LTGVDLDEDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred EEEEEecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 9999975 476 699999999999999999999864
No 21
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.8e-15 Score=140.35 Aligned_cols=77 Identities=29% Similarity=0.448 Sum_probs=52.2
Q ss_pred HHHHHHHc-CCeEEE--EeccccccccccCcEEeccCCCCCCeEEEEEEeeee----------CCeEEEEEECCCCCCCC
Q 024815 54 ALQKAVAN-QPVSVA--IEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTE----------NGADYWIVKNSWGSSWG 120 (262)
Q Consensus 54 ~lk~al~~-GPV~v~--i~a~~~~f~~Y~sGIy~~~c~~~~~HaVliVGYg~~----------~G~~YWIVkNSWGt~WG 120 (262)
.+++++.. |-+..+ |++. .+..-.-+.|........+|||+||||++. .|...||||||||++||
T Consensus 226 ~i~~~~~~yg~~s~~~~id~~--~~~~~~~~~~~~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG 303 (372)
T COG4870 226 NIKAMFGFYGAVSSSMYIDAT--NSLGICIPYPYVDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWG 303 (372)
T ss_pred chHHHHhhhccccceeEEecc--cccccccCCCCCCccccccceEEEEeccccccccccccCCCCCceEEEECccccccc
Confidence 35666654 544433 5554 232222234433333556899999999975 24569999999999999
Q ss_pred CCceEEEecccC
Q 024815 121 EAGYIRMERNVA 132 (262)
Q Consensus 121 e~GY~rI~rg~~ 132 (262)
++|||||.+...
T Consensus 304 ~~GYfwisY~ya 315 (372)
T COG4870 304 ENGYFWISYYYA 315 (372)
T ss_pred cCceEEEEeeec
Confidence 999999998753
No 22
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=98.95 E-value=3e-09 Score=102.69 Aligned_cols=85 Identities=31% Similarity=0.599 Sum_probs=57.8
Q ss_pred eeeeCCCch-HHHHHHHHHcC-CeEEEEeccccccccccCcEEeccC-------C---------------CCCCeEEEEE
Q 024815 43 DYEDVPLND-EKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRC-------G---------------TSLDHGVTAV 98 (262)
Q Consensus 43 ~y~~v~~~~-~~~lk~al~~G-PV~v~i~a~~~~f~~Y~sGIy~~~c-------~---------------~~~~HaVliV 98 (262)
.|.+|+-++ .+++.++|..| ||..+-++. . +...+.||++... + ...+|||+|+
T Consensus 289 ~ylNvpid~lk~~~i~~Lk~G~~VwfgcDV~-k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~it 366 (438)
T PF03051_consen 289 RYLNVPIDELKDAAIKSLKAGYPVWFGCDVG-K-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVIT 366 (438)
T ss_dssp EEEE--HHHHHHHHHHHHHTT--EEEEEETT-T-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEE
T ss_pred eEeccCHHHHHHHHHHHHHcCCcEEEeccCC-c-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEE
Confidence 366665322 23334455667 999999996 3 4566889885421 0 1248999999
Q ss_pred Eeee-eCCe-EEEEEECCCCCCCCCCceEEEec
Q 024815 99 GYGT-ENGA-DYWIVKNSWGSSWGEAGYIRMER 129 (262)
Q Consensus 99 GYg~-~~G~-~YWIVkNSWGt~WGe~GY~rI~r 129 (262)
|... ++|+ .+|+|+||||+..|.+|||.+..
T Consensus 367 Gv~~D~~g~p~~wkVeNSWG~~~g~kGy~~msd 399 (438)
T PF03051_consen 367 GVDLDEDGKPVRWKVENSWGTDNGDKGYFYMSD 399 (438)
T ss_dssp EEEE-TTSSEEEEEEE-SBTTTSTBTTEEEEEH
T ss_pred EEEeccCCCeeEEEEEcCCCCCCCCCcEEEECH
Confidence 9996 5776 59999999999999999999974
No 23
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=96.67 E-value=0.00061 Score=63.70 Aligned_cols=75 Identities=25% Similarity=0.464 Sum_probs=54.5
Q ss_pred HHHHHHHH----HcC-CeEEEEeccccccccccCcEEecc-----C--C--------------C-CCCeEEEEEEeeee-
Q 024815 52 EKALQKAV----ANQ-PVSVAIEGGGMAFQLYESGIFTGR-----C--G--------------T-SLDHGVTAVGYGTE- 103 (262)
Q Consensus 52 ~~~lk~al----~~G-PV~v~i~a~~~~f~~Y~sGIy~~~-----c--~--------------~-~~~HaVliVGYg~~- 103 (262)
.+.+|++. ..| +|-.+-++. .|..-+.||.+.+ . + . -..|||+|.|.+.+
T Consensus 297 me~lkkl~~~q~qagetVwFG~dvg--q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~ 374 (444)
T COG3579 297 MERLKKLAIKQMQAGETVWFGCDVG--QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDE 374 (444)
T ss_pred HHHHHHHHHHHHhcCCcEEeecCch--hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhcccccc
Confidence 45555543 346 898888885 5777788876421 0 0 0 13699999999954
Q ss_pred CCe-EEEEEECCCCCCCCCCceEEEe
Q 024815 104 NGA-DYWIVKNSWGSSWGEAGYIRME 128 (262)
Q Consensus 104 ~G~-~YWIVkNSWGt~WGe~GY~rI~ 128 (262)
+|. --|.|.||||..=|.+|||-++
T Consensus 375 ~g~p~rwkVENSWG~d~G~~GyfvaS 400 (444)
T COG3579 375 TGNPLRWKVENSWGKDVGKKGYFVAS 400 (444)
T ss_pred CCCceeeEeecccccccCCCceEeeh
Confidence 554 3799999999999999999876
No 24
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=95.85 E-value=0.041 Score=43.29 Aligned_cols=58 Identities=22% Similarity=0.409 Sum_probs=34.3
Q ss_pred CchHHHHHHHHHcC-CeEEEEeccccccccccCcEEeccCCCCCCeEEEEEEeeeeCCeEEEEEECCC
Q 024815 49 LNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSW 115 (262)
Q Consensus 49 ~~~~~~lk~al~~G-PV~v~i~a~~~~f~~Y~sGIy~~~c~~~~~HaVliVGYg~~~G~~YWIVkNSW 115 (262)
..+.+.|++.|.+| ||.+.+....... ....+.. ....|.|+|+||.++. +++|..+|
T Consensus 86 ~~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~~---~~~~H~vvi~Gy~~~~---~~~v~DP~ 144 (144)
T PF13529_consen 86 DASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYDG---TYGGHYVVIIGYDEDG---YVYVNDPW 144 (144)
T ss_dssp TS-HHHHHHHHHTT--EEEEEETTSS-----TTEEEEE----TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred CCcHHHHHHHHHCCCcEEEEEEcccccC---CCCCcCC---CcCCEEEEEEEEeCCC---EEEEeCCC
Confidence 34678889999987 9999997431111 1112211 2357999999999753 78887776
No 25
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=90.93 E-value=0.69 Score=42.20 Aligned_cols=55 Identities=20% Similarity=0.370 Sum_probs=37.2
Q ss_pred HHHHHHHHHcC-CeEEEEeccccccccccCcEEeccCCCCCCeEEEEEEeeeeCCeEEEEEEC
Q 024815 52 EKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKN 113 (262)
Q Consensus 52 ~~~lk~al~~G-PV~v~i~a~~~~f~~Y~sGIy~~~c~~~~~HaVliVGYg~~~G~~YWIVkN 113 (262)
.+.|+++|.+| ||.+.++.. +..|...-|+ .....|.|+|+||++++ ..|.++-+
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~---~lpy~~~~~~---~~~~~H~i~v~G~d~~~-~~~~v~D~ 133 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY---YLPYRPNYYK---KHHADHYIVVYGYDEEE-DVFYVSDP 133 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc---cCCCCccccc---cccCCcEEEEEEEeCCC-CEEEEEcC
Confidence 45777888888 999998875 4445443222 12347999999999753 45666644
No 26
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.40 E-value=1.3 Score=38.30 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=36.8
Q ss_pred eeCCCchHHHHHHHHHcC-CeEEEEeccccccccccCcEEeccCCCCCCeEEEEEEeeeeCCeEEEEEECCCC
Q 024815 45 EDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWG 116 (262)
Q Consensus 45 ~~v~~~~~~~lk~al~~G-PV~v~i~a~~~~f~~Y~sGIy~~~c~~~~~HaVliVGYg~~~G~~YWIVkNSWG 116 (262)
..+...+..+|+.+|.+| ||.+-.-. |.. ..-|+|+|+||++. |+..-+.||
T Consensus 116 ~d~tGksl~~ik~ql~kg~PV~iw~T~----~~~------------~s~H~v~itgyDk~----n~yynDpyG 168 (195)
T COG4990 116 VDLTGKSLSDIKGQLLKGRPVVIWVTN----FHS------------YSIHSVLITGYDKY----NIYYNDPYG 168 (195)
T ss_pred ccCcCCcHHHHHHHHhcCCcEEEEEec----ccc------------cceeeeEeeccccc----ceEeccccc
Confidence 445666788999999886 99877644 222 22599999999964 556666774
No 27
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=78.81 E-value=8.2 Score=33.18 Aligned_cols=62 Identities=19% Similarity=0.431 Sum_probs=37.4
Q ss_pred hHHHHHHHHHc-CCeEEEEeccccccccccCcEEeccCCCCCCeEEEEEEeeee-CCeEEEEEECCCCCCCCCCceEEEe
Q 024815 51 DEKALQKAVAN-QPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTE-NGADYWIVKNSWGSSWGEAGYIRME 128 (262)
Q Consensus 51 ~~~~lk~al~~-GPV~v~i~a~~~~f~~Y~sGIy~~~c~~~~~HaVliVGYg~~-~G~~YWIVkNSWGt~WGe~GY~rI~ 128 (262)
+.+++++.+.. -||.+..+.... ..+...+|||+||||-.. +|.++.++=|=| | ++++-+.
T Consensus 90 s~~eV~~~~~~nk~i~i~~~~v~~------------~~~~~~gHAlavvGya~~~~g~~~y~~WNPW---~--~~~~~~s 152 (175)
T PF05543_consen 90 SFDEVKKLIDNNKGIAILADRVEQ------------TNGPHAGHALAVVGYAKPNNGQKTYYFWNPW---W--NDVMIQS 152 (175)
T ss_dssp -HHHHHHHHHTT-EEEEEEEETTS------------CTTB--EEEEEEEEEEEETTSEEEEEEE-TT------SS-EEEE
T ss_pred CHHHHHHHHHcCCCeEEEeccccc------------CCCCccceeEEEEeeeecCCCCeEEEEeCCc---c--CCcEEEe
Confidence 35566777765 577777664311 112245799999999874 679999999988 4 3456555
Q ss_pred c
Q 024815 129 R 129 (262)
Q Consensus 129 r 129 (262)
.
T Consensus 153 a 153 (175)
T PF05543_consen 153 A 153 (175)
T ss_dssp T
T ss_pred c
Confidence 3
No 28
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=77.30 E-value=12 Score=34.67 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=23.5
Q ss_pred CeEEEEEEeeeeC--CeEEEEEECCCCC
Q 024815 92 DHGVTAVGYGTEN--GADYWIVKNSWGS 117 (262)
Q Consensus 92 ~HaVliVGYg~~~--G~~YWIVkNSWGt 117 (262)
+||-.|+++-+.+ |.+...|||-||.
T Consensus 236 ~HaY~Vl~~~~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 236 GHAYSVLDVREVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred CcceEEeEEEEEccCceEEEEecCCccC
Confidence 8999999998766 8999999999994
No 29
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=75.23 E-value=0.32 Score=45.84 Aligned_cols=76 Identities=24% Similarity=0.306 Sum_probs=51.7
Q ss_pred hHHHHHHHHH---cC--CeEEEEeccccccccccCcEEec-----c---------CC--------CC-CCeEEEEEEeee
Q 024815 51 DEKALQKAVA---NQ--PVSVAIEGGGMAFQLYESGIFTG-----R---------CG--------TS-LDHGVTAVGYGT 102 (262)
Q Consensus 51 ~~~~lk~al~---~G--PV~v~i~a~~~~f~~Y~sGIy~~-----~---------c~--------~~-~~HaVliVGYg~ 102 (262)
+.+.|++++. +| ||-.+-++. .|..-++|+.+- + .. .. ..|||++.|-+.
T Consensus 305 ~~d~l~k~vv~sl~~~kaVwfgcd~~--k~~~~K~G~~dl~l~~~~l~fG~~l~~~~KAeRl~y~eSlmthAml~T~v~~ 382 (457)
T KOG4128|consen 305 SMDILMKIVVTSLEGDKAVWFGCDIR--KAISLKSGPLDLRLHQFDLLFGFKLGESTKAERLDYRESLMTHAMLLTSVGL 382 (457)
T ss_pred CHHHHHHHHHHHhcCCcceEEecccH--hhhhcccCccchhhccCceeeeeeccccchhhhhhHHHHHHHHHHHhhhccc
Confidence 4567777764 23 777776663 466667775421 1 00 01 269999999982
Q ss_pred -e---CCeEEEEEECCCCCCCCCCceEEEe
Q 024815 103 -E---NGADYWIVKNSWGSSWGEAGYIRME 128 (262)
Q Consensus 103 -~---~G~~YWIVkNSWGt~WGe~GY~rI~ 128 (262)
+ ++-.-|-|.||||.+-|.+||..+.
T Consensus 383 kd~~~g~~~~~rVenswgkd~gkkg~~~mt 412 (457)
T KOG4128|consen 383 KDPATGGLNEHRVENSWGKDLGKKGVNKMT 412 (457)
T ss_pred cCcccCCchhhhhhchhhhhccccchhhhh
Confidence 2 4556799999999999999997664
No 30
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=71.62 E-value=12 Score=29.46 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=29.0
Q ss_pred HHHHHHcC-CeEEEEeccccccccccCcEEeccCCCCCCeEEEEEEeeeeCCeEEEEEECCC
Q 024815 55 LQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSW 115 (262)
Q Consensus 55 lk~al~~G-PV~v~i~a~~~~f~~Y~sGIy~~~c~~~~~HaVliVGYg~~~G~~YWIVkNSW 115 (262)
+++.+..| ||.+.++.. + -....+|.|+|+||+. ..+.+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~---~-----------~~~~~gH~vVv~g~~~---~~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG---V-----------SITPSGHAMVVIGYDR---KGNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC---c-----------ccCCCCeEEEEEEEcC---CCCEEEECCC
Confidence 67778776 999887641 1 0113579999999982 1235666765
No 31
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=70.33 E-value=14 Score=32.68 Aligned_cols=59 Identities=15% Similarity=0.306 Sum_probs=33.7
Q ss_pred hHHHHHHHHHc-CCeEEEEeccccccccc--cCcEEec---cC----CCCCCeEEEEEEeeeeCCeEEEEEEC
Q 024815 51 DEKALQKAVAN-QPVSVAIEGGGMAFQLY--ESGIFTG---RC----GTSLDHGVTAVGYGTENGADYWIVKN 113 (262)
Q Consensus 51 ~~~~lk~al~~-GPV~v~i~a~~~~f~~Y--~sGIy~~---~c----~~~~~HaVliVGYg~~~G~~YWIVkN 113 (262)
+.++|.+.|+. ||+++-+++. .+.-. +.-.+.. .| .....|-|+|+||+.+.+ -+++||
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~--~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~~~--~~~yrd 180 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDAS--LLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAATK--EFEYRD 180 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccc--cccChhhcccccccccccccCCCCCccEEEEEEEeecCCCC--eEEEeC
Confidence 45677888887 5777777764 12200 2222211 11 123589999999997532 355555
No 32
>PF14625 Lustrin_cystein: Lustrin, cysteine-rich repeated domain
Probab=63.16 E-value=7 Score=25.38 Aligned_cols=21 Identities=29% Similarity=0.678 Sum_probs=16.1
Q ss_pred CCCCCCCCccccCCCCceeee
Q 024815 167 KPPAVCDNYYSCPESNTCCCV 187 (262)
Q Consensus 167 ~~~~~c~~~~~Cp~~~TCc~~ 187 (262)
..++.|+....||.+.+|=..
T Consensus 14 ~~~~~C~~~~~CP~~y~C~~~ 34 (45)
T PF14625_consen 14 GQPVSCSPDNSCPSGYSCHFS 34 (45)
T ss_pred CCeeECcCCCCCCCcCEeeec
Confidence 356799777889999998433
No 33
>PF07829 Toxin_14: Alpha-A conotoxin PIVA-like protein; InterPro: IPR012498 Alpha-A conotoxin PIVA (P55963 from SWISSPROT) is the major paralytic toxin found in the venom produced by the piscivorous snail Conus purpurascens. This peptide acts by blocking the acetylcholine-binding site of the nicotinic acetylcholine receptor at the neuromuscular junction []. The overall shape of the peptide is described as an "iron" with a highly charged hydrophilic loop of 15S-19R forming the "handle" domain that is exposed to the exterior of the protein. The stability of the conotoxin is primarily governed by three disulphide bonds. A triangular structural motif formed by residues 19R, 12H and 6Y is thought to constitute a "binding core" that is important in binding to the acetylcholine receptor []. ; GO: 0030550 acetylcholine receptor inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1PQR_A 1P1P_A.
Probab=62.22 E-value=3.1 Score=24.01 Aligned_cols=10 Identities=60% Similarity=1.693 Sum_probs=6.1
Q ss_pred ccc-cCCCcee
Q 024815 198 GCC-PLEAATC 207 (262)
Q Consensus 198 ~Cc-p~~~avc 207 (262)
||| |+|+|.|
T Consensus 1 gccg~ypnaac 11 (26)
T PF07829_consen 1 GCCGPYPNAAC 11 (26)
T ss_dssp --STTSSSSS-
T ss_pred CCccCCCCccc
Confidence 466 8999988
No 34
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=43.68 E-value=53 Score=27.96 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=26.6
Q ss_pred hHHHHHHHHHc-CCeEEEEeccccccccccCcEEeccCCCCCCeEEEEEEeeee
Q 024815 51 DEKALQKAVAN-QPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTE 103 (262)
Q Consensus 51 ~~~~lk~al~~-GPV~v~i~a~~~~f~~Y~sGIy~~~c~~~~~HaVliVGYg~~ 103 (262)
+.+.++.+|.+ |||-++++....+ -..|+++|.|-..+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P~~~---------------~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAPGDS---------------WVAHASVITGIDGD 135 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCCc---------------ceeeEEEEEeecCC
Confidence 46788888875 9999997654221 12588888888654
No 35
>smart00289 WR1 Worm-specific repeat type 1. Worm-specific repeat type 1. Cysteine-rich domain apparently unique (so far) to C. elegans. Often appears with KU domains. About 3 dozen worm proteins contain this domain.
Probab=42.37 E-value=24 Score=21.68 Aligned_cols=21 Identities=29% Similarity=0.620 Sum_probs=16.7
Q ss_pred CCCCCCCCccccCCCCceeee
Q 024815 167 KPPAVCDNYYSCPESNTCCCV 187 (262)
Q Consensus 167 ~~~~~c~~~~~Cp~~~TCc~~ 187 (262)
...+.|.....||++.+|=..
T Consensus 11 ~~~~~C~~~~~CP~g~~C~~~ 31 (38)
T smart00289 11 GSPVRCSPNGSCPSGYSCQNS 31 (38)
T ss_pred CCCeECCCCCCCCCCCEEecC
Confidence 456789888999999998754
No 36
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=42.22 E-value=1e+02 Score=26.30 Aligned_cols=30 Identities=33% Similarity=0.751 Sum_probs=19.7
Q ss_pred CeEEEEEEeeeeCCeEEEEEECCCCCCCCCCceEE
Q 024815 92 DHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIR 126 (262)
Q Consensus 92 ~HaVliVGYg~~~G~~YWIVkNSWGt~WGe~GY~r 126 (262)
.||.+|=||..+ .|+-+-=.||-. .+||++
T Consensus 163 GHawViDGy~~~---~~~H~NwGW~G~--~nGyy~ 192 (192)
T PF01640_consen 163 GHAWVIDGYDSD---GYFHCNWGWGGS--SNGYYR 192 (192)
T ss_dssp EEEEEEEEEESS---SEEEEE-SSTTT--T-EEEE
T ss_pred CeEEEEcCccCC---CeEEEeeCccCC--CCCccC
Confidence 799999999643 466665555543 468875
No 37
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=28.94 E-value=1e+02 Score=28.57 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=21.5
Q ss_pred CeEEEEEEeeeeCCeE--EEEEECCCCC
Q 024815 92 DHGVTAVGYGTENGAD--YWIVKNSWGS 117 (262)
Q Consensus 92 ~HaVliVGYg~~~G~~--YWIVkNSWGt 117 (262)
+||=.|++....++.+ -..|||-||.
T Consensus 228 ~HaYsVl~v~~~~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 228 GHAYSVTDVREVQGRRQELLRLRNPWGQ 255 (318)
T ss_pred CccEEEEEEEEEecCCeEEEEEECCCCC
Confidence 8999999988765545 8999999993
No 38
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=27.31 E-value=33 Score=33.61 Aligned_cols=9 Identities=22% Similarity=0.586 Sum_probs=5.0
Q ss_pred EEEEEEeee
Q 024815 94 GVTAVGYGT 102 (262)
Q Consensus 94 aVliVGYg~ 102 (262)
++-+.||=.
T Consensus 143 ~i~algWVa 151 (480)
T KOG2675|consen 143 SIPALGWVA 151 (480)
T ss_pred hcccceeEe
Confidence 455666654
No 39
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=22.33 E-value=85 Score=28.42 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=19.6
Q ss_pred CCeEEEEEEeeeeCC----eEEEEEECCCCC
Q 024815 91 LDHGVTAVGYGTENG----ADYWIVKNSWGS 117 (262)
Q Consensus 91 ~~HaVliVGYg~~~G----~~YWIVkNSWGt 117 (262)
.+||-.|+++-+.++ ...-.|||-||.
T Consensus 213 ~~HaY~Vl~~~~~~~~~~~~~lv~LrNPwg~ 243 (298)
T PF00648_consen 213 PGHAYAVLDVREVNGNGEGHRLVKLRNPWGS 243 (298)
T ss_dssp TTS-EEEEEEEEEEETTEEEEEEEEE-TTSS
T ss_pred cceeEEEEEEEeeccccceeEEEEEcCCCcc
Confidence 389999999986533 567889999994
No 40
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=22.26 E-value=2.7e+02 Score=19.16 Aligned_cols=12 Identities=17% Similarity=0.703 Sum_probs=10.1
Q ss_pred CCCCCCceEEEe
Q 024815 117 SSWGEAGYIRME 128 (262)
Q Consensus 117 t~WGe~GY~rI~ 128 (262)
++||.+|+.++.
T Consensus 42 ttFg~~G~v~~d 53 (55)
T TIGR02608 42 TTFGTGGKVTFD 53 (55)
T ss_pred CCcCCCcEEEEe
Confidence 689999998875
Done!