BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024816
MTHHFLLHTSLIAQSSSSTFSTLSCSFKPHKIPIITNNPKTIPATDRVIDFGKYKGKMLG
TLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKDRIEWEFAENVLTGNSNDVNKNKN
MATNESSVSRLLELSQRFGWDNEDRVGWSKLNFELLGTSKGGRIPRISERKVAKETLKVQ
KKERFGGLLLSESEERRRERRMRVKEKVSGVKIGNGNGDGNGGVGSSLRSEKRDQDLTVE
IHNPFPGREALLKKVMSRKRFL

High Scoring Gene Products

Symbol, full name Information P value
AT1G51080 protein from Arabidopsis thaliana 5.4e-51

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024816
        (262 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2026021 - symbol:AT1G51080 "AT1G51080" species...   462  5.4e-51   2


>TAIR|locus:2026021 [details] [associations]
            symbol:AT1G51080 "AT1G51080" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0009536 "plastid" evidence=IDA] [GO:0016556 "mRNA
            modification" evidence=RCA] EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0009536 EMBL:AC079828 EMBL:BT010434 EMBL:AK175457
            IPI:IPI00531867 PIR:A96548 RefSeq:NP_175519.1 UniGene:At.17182
            UniGene:At.37898 PRIDE:Q9C683 EnsemblPlants:AT1G51080.1
            GeneID:841530 KEGG:ath:AT1G51080 TAIR:At1g51080 eggNOG:NOG263926
            HOGENOM:HOG000152172 InParanoid:Q9C683 OMA:FGWDNED PhylomeDB:Q9C683
            ProtClustDB:CLSN2682935 ArrayExpress:Q9C683 Genevestigator:Q9C683
            InterPro:IPR024530 Pfam:PF12843 Uniprot:Q9C683
        Length = 285

 Score = 462 (167.7 bits), Expect = 5.4e-51, Sum P(2) = 5.4e-51
 Identities = 88/135 (65%), Positives = 108/135 (80%)

Query:    44 ATDRVIDFGKYKGKMLGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKDRIEWEF 103
             A D +IDFGK+KGKMLGTLPS+YLKWVSKNLRA  FE+WA LAD+VL+D VYKDR EWEF
Sbjct:    63 ARDTIIDFGKHKGKMLGTLPSSYLKWVSKNLRAGVFEYWAKLADEVLEDDVYKDRTEWEF 122

Query:   104 AENVLTGNSNDVNKNKNMATNE---SSVSRLLELSQRFGWDNEDRVGWSKLNFELLGTSK 160
             AE +L G+   +    ++  +    +SVS LLE+S+RFGWDNED++GWSK+NFELLGTSK
Sbjct:   123 AEKILHGSDESMRALTSVRKSREEVNSVSMLLEISERFGWDNEDKIGWSKINFELLGTSK 182

Query:   161 GGRIPRISERKVAKE 175
             GGRIPR+  RK  +E
Sbjct:   183 GGRIPRL--RKANEE 195

 Score = 85 (35.0 bits), Expect = 5.4e-51, Sum P(2) = 5.4e-51
 Identities = 16/30 (53%), Positives = 24/30 (80%)

Query:   231 EKRDQDLTVEIHNPFPGREALLKKVMSRKR 260
             E  ++ L  +I +PFPGRE+LLKKVM+++R
Sbjct:   254 EDVEKQLEPKIQSPFPGRESLLKKVMNKRR 283


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      262       198   0.00083  111 3  11 22  0.50    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  583 (62 KB)
  Total size of DFA:  169 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.72u 0.10s 20.82t   Elapsed:  00:00:01
  Total cpu time:  20.72u 0.10s 20.82t   Elapsed:  00:00:01
  Start:  Sat May 11 02:06:21 2013   End:  Sat May 11 02:06:22 2013

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