BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024816
         (262 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RQI|A Chain A, Crystal Structure Of A Response Regulator Protein From
           Burkholderia Pseudomallei With A Phosphorylated Aspartic
           Acid, Calcium Ion And Citrate
          Length = 184

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 86  ADQVLQDPVY--KDRIEWEFAENVLTGNSNDVN 116
           A++ L++PV    DR+EWE  + VL  N+N+++
Sbjct: 128 AEEALENPVVLSVDRLEWEHIQRVLAENNNNIS 160


>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
          Length = 743

 Score = 27.7 bits (60), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 131 LLELSQRFGWDNEDRVGWSKLNFELLGTSKGGRIPRISERKVAKETLKVQ 180
           LL++ Q+F  D E R+  S    +    S G RI RI   +   E +K++
Sbjct: 326 LLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKME 375


>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
          Length = 772

 Score = 27.7 bits (60), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 114 DVNKNKNMATNESS--VSRLLELSQRFGWDNEDRVGWSKLNFELLGTSKGGRIPRISERK 171
           +V++ KN   ++ +     LL++ Q+F  D E R+  S    +    S G RI RI   +
Sbjct: 330 EVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHER 389

Query: 172 VAKETLKVQ 180
              E +K++
Sbjct: 390 FPFELVKME 398


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,773,064
Number of Sequences: 62578
Number of extensions: 190400
Number of successful extensions: 675
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 675
Number of HSP's gapped (non-prelim): 3
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)