BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024816
(262 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P50570|DYN2_HUMAN Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2
Length = 870
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Query: 114 DVNKNKNMATNESS--VSRLLELSQRFGWDNEDRVGWSKLNFELLGTSKGGRIPRISERK 171
+V + KN ++ + LL++ Q+FG D E R+ S + L S G RI RI +
Sbjct: 310 EVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELSGGARINRIFHER 369
Query: 172 VAKETLKVQKKERFGGLLLSESEERRRERRMRVKEKVSGVKIG 214
E +K++ E+ + RRE +K + GV+ G
Sbjct: 370 FPFELVKMEFDEK----------DLRREISYAIK-NIHGVRTG 401
>sp|A6H7I5|DYN2_BOVIN Dynamin-2 OS=Bos taurus GN=DNM2 PE=2 SV=1
Length = 866
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Query: 114 DVNKNKNMATNESS--VSRLLELSQRFGWDNEDRVGWSKLNFELLGTSKGGRIPRISERK 171
+V + KN ++ + LL++ Q+FG D E R+ S + L S G RI RI +
Sbjct: 310 EVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELSGGARINRIFHER 369
Query: 172 VAKETLKVQKKERFGGLLLSESEERRRERRMRVKEKVSGVKIG 214
E +K++ E+ + RRE +K + GV+ G
Sbjct: 370 FPFELVKMEFDEK----------DLRREISYAIK-NIHGVRTG 401
>sp|P39054|DYN2_MOUSE Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2
Length = 870
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Query: 114 DVNKNKNMATNESS--VSRLLELSQRFGWDNEDRVGWSKLNFELLGTSKGGRIPRISERK 171
+V + KN ++ + LL++ Q+FG D E R+ S + L S G RI RI +
Sbjct: 310 EVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELSGGARINRIFHER 369
Query: 172 VAKETLKVQKKERFGGLLLSESEERRRERRMRVKEKVSGVKIG 214
E +K++ E+ + RRE +K + GV+ G
Sbjct: 370 FPFELVKMEFDEK----------DLRREISYAIK-NIHGVRTG 401
>sp|P39052|DYN2_RAT Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1
Length = 870
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Query: 114 DVNKNKNMATNESS--VSRLLELSQRFGWDNEDRVGWSKLNFELLGTSKGGRIPRISERK 171
+V + KN ++ + LL++ Q+FG D E R+ S + L S G RI RI +
Sbjct: 310 EVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELSGGARINRIFHER 369
Query: 172 VAKETLKVQKKERFGGLLLSESEERRRERRMRVKEKVSGVKIG 214
E +K++ E+ + RRE +K + GV+ G
Sbjct: 370 FPFELVKMEFDEK----------DLRREISYAIK-NIHGVRTG 401
>sp|Q99MS7|EH1L1_MOUSE EH domain-binding protein 1-like protein 1 OS=Mus musculus GN=Ehbp1l1
PE=2 SV=1
Length = 1716
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 150 KLNFELLGTSKGGRIPRISERKVAKETLKVQKKE-RFGGLLLSESEERRRE 199
K+N EL GT KG IP + + + E L Q+ E R GL E+E+ E
Sbjct: 965 KVNSELFGTQKGSEIPELETKTIKSEILDAQETEVRDLGLRRGEAEKAEAE 1015
>sp|P0AD40|YPEB_ECOLI Uncharacterized protein YpeB OS=Escherichia coli (strain K12)
GN=ypeB PE=4 SV=1
Length = 72
Score = 32.3 bits (72), Expect = 4.0, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 40 KTIPATDRVIDFGKYKGKMLGTLPSNYLKWVSK 72
+ I + ++ FGKYKG+ L LP YL W ++
Sbjct: 5 QLIEIANTIMPFGKYKGRRLIDLPEEYLLWFAR 37
>sp|P0AD41|YPEB_ECO57 Uncharacterized protein YpeB OS=Escherichia coli O157:H7 GN=ypeB
PE=4 SV=1
Length = 72
Score = 32.3 bits (72), Expect = 4.0, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 40 KTIPATDRVIDFGKYKGKMLGTLPSNYLKWVSK 72
+ I + ++ FGKYKG+ L LP YL W ++
Sbjct: 5 QLIEIANTIMPFGKYKGRRLIDLPEEYLLWFAR 37
>sp|Q92247|BLI4_NEUCR Putative oxidoreductase bli-4, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=bli-4 PE=1 SV=1
Length = 412
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 76/193 (39%), Gaps = 20/193 (10%)
Query: 59 LGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKDRIEWEFAENVLTGNSNDVNKN 118
LG ++ + W+ NL +D+ A++A+Q+ +D D + ++T +
Sbjct: 145 LGQDKADRVHWIQCNL--EDWAQTAVVAEQIKKDTDRLDILVNNSGRGIMTAGLTSYGVD 202
Query: 119 KNMATNESS----VSRLLELSQRFGWDNEDRVGWSKLNFELLGTS-KGGRIPRISERKVA 173
K+MATN S LL L Q+ + + V S + L + KG + + E
Sbjct: 203 KHMATNHMGHVVLTSHLLPLLQKTAEETGETVRISNQSSNLHSAAPKGTQFKSLEEINED 262
Query: 174 KETLKVQKKERFGGLLLSESEERRRERRMRVKEKVSGVKIGNGNGDGNGGVGSSLRSEKR 233
+ + G+L + +R R+M E G + N G S++
Sbjct: 263 VGPNGQYGRSKLAGILYARYFDREVTRKM---EGSKGRVVMNATHPGFVSTKQSVK---- 315
Query: 234 DQDLTVEIHNPFP 246
+IH P+P
Sbjct: 316 ------DIHEPYP 322
>sp|P21575|DYN1_RAT Dynamin-1 OS=Rattus norvegicus GN=Dnm1 PE=1 SV=2
Length = 864
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 13/103 (12%)
Query: 114 DVNKNKNMATNESS--VSRLLELSQRFGWDNEDRVGWSKLNFELLGTSKGGRIPRISERK 171
+V++ KN ++ + LL++ Q+F D E R+ S + S G RI RI +
Sbjct: 310 EVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHER 369
Query: 172 VAKETLKVQKKERFGGLLLSESEERRRERRMRVKEKVSGVKIG 214
E +K++ E+ E RRE +K + G++ G
Sbjct: 370 FPFELVKMEFDEK----------ELRREISYAIK-NIHGIRTG 401
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,397,099
Number of Sequences: 539616
Number of extensions: 4279582
Number of successful extensions: 16755
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 16700
Number of HSP's gapped (non-prelim): 67
length of query: 262
length of database: 191,569,459
effective HSP length: 115
effective length of query: 147
effective length of database: 129,513,619
effective search space: 19038501993
effective search space used: 19038501993
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)