Query 024816
Match_columns 262
No_of_seqs 118 out of 274
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 07:37:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12843 DUF3820: Protein of u 99.8 4.2E-20 9.1E-25 139.5 3.1 55 36-90 1-56 (67)
2 COG3530 Uncharacterized protei 99.7 6.3E-18 1.4E-22 128.4 3.7 56 36-91 1-57 (71)
3 PRK06310 DNA polymerase III su 98.6 1.3E-08 2.9E-13 89.8 2.5 34 43-76 187-221 (250)
4 PRK06309 DNA polymerase III su 98.5 2.8E-08 6E-13 86.3 1.9 28 46-73 183-210 (232)
5 PRK07983 exodeoxyribonuclease 98.3 1.8E-07 3.8E-12 81.9 1.9 35 42-76 167-204 (219)
6 COG4567 Response regulator con 77.7 0.96 2.1E-05 40.6 0.8 24 89-112 132-155 (182)
7 KOG1551 Uncharacterized conser 60.5 3.8 8.3E-05 39.9 0.9 79 77-168 134-212 (371)
8 PLN00095 chlorophyllide a oxyg 44.2 13 0.00027 36.9 1.5 51 41-94 314-366 (394)
9 COG4143 TbpA ABC-type thiamine 40.2 30 0.00065 33.8 3.3 81 21-113 130-218 (336)
10 PRK11779 sbcB exonuclease I; P 33.6 15 0.00032 36.7 0.2 63 38-101 220-287 (476)
11 PF10930 DUF2737: Protein of u 29.7 32 0.0007 25.9 1.4 12 243-254 22-33 (54)
12 KOG3222 Inosine triphosphate p 26.1 45 0.00098 30.5 1.9 18 59-76 78-95 (195)
13 PRK09946 hypothetical protein; 21.8 65 0.0014 30.8 2.1 35 64-104 15-49 (270)
14 cd08794 Death_IRAK1 Death doma 21.8 93 0.002 25.3 2.7 75 58-140 2-76 (84)
15 COG4675 MdpB Microcystin-depen 21.0 36 0.00077 30.5 0.3 12 152-163 36-47 (170)
16 PF09441 Abp2: ARS binding pro 20.7 73 0.0016 28.8 2.1 66 22-95 20-86 (175)
No 1
>PF12843 DUF3820: Protein of unknown function (DUF3820); InterPro: IPR024530 This protein family is mostly found in bacteria and is currently functionally uncharacterised.
Probab=99.79 E-value=4.2e-20 Score=139.47 Aligned_cols=55 Identities=25% Similarity=0.509 Sum_probs=52.8
Q ss_pred CCCcCchhhcccccccccCCCeeeccCChhHHHHHhhc-CCCCChhHHHHHHHHHh
Q 024816 36 TNNPKTIPATDRVIDFGKYKGKMLGTLPSNYLKWVSKN-LRAQDFEHWAMLADQVL 90 (262)
Q Consensus 36 ~np~~L~~li~t~MPFGKYKGr~L~DLPe~YL~Wf~kk-fp~G~lg~Wa~LA~eVL 90 (262)
||++.|++++.++||||||||+.|+|||++||+||++| ||+|++|++++++.||=
T Consensus 1 m~~~~L~~l~~~~MPFGKyKG~~l~dLP~~YL~W~~~kGfP~GkLG~~l~~~~eik 56 (67)
T PF12843_consen 1 MDPEILIELAQTKMPFGKYKGRPLADLPESYLVWFARKGFPKGKLGELLALMYEIK 56 (67)
T ss_pred CCHHHHHHHHhcCCCCcccCCcCHhhCCHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999 99999999999998873
No 2
>COG3530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.70 E-value=6.3e-18 Score=128.40 Aligned_cols=56 Identities=23% Similarity=0.505 Sum_probs=52.6
Q ss_pred CCCcCchhhcccccccccCCCeeeccCChhHHHHHhhc-CCCCChhHHHHHHHHHhc
Q 024816 36 TNNPKTIPATDRVIDFGKYKGKMLGTLPSNYLKWVSKN-LRAQDFEHWAMLADQVLQ 91 (262)
Q Consensus 36 ~np~~L~~li~t~MPFGKYKGr~L~DLPe~YL~Wf~kk-fp~G~lg~Wa~LA~eVL~ 91 (262)
|.++.|++++++.||||||+|+.|+|||+.||.||+++ ||.|++|..++|++++=.
T Consensus 1 meke~L~~ia~t~MPFGKYqGR~liDLPe~YLlWFarkgFP~G~lG~Lm~l~l~ik~ 57 (71)
T COG3530 1 MEKEHLIEIANTPMPFGKYQGRVLIDLPEEYLLWFARKGFPPGKLGRLMQLTLEIKI 57 (71)
T ss_pred CCHHHHHHHHcCCCCcccccceeeecCCHHHHHHHHHhCCCchHHHHHHHHHHHHhh
Confidence 56788999999999999999999999999999999999 999999999999998743
No 3
>PRK06310 DNA polymerase III subunit epsilon; Validated
Probab=98.64 E-value=1.3e-08 Score=89.85 Aligned_cols=34 Identities=32% Similarity=0.745 Sum_probs=30.3
Q ss_pred hhcccccccccCCCeeeccCChhHHHHHhhc-CCC
Q 024816 43 PATDRVIDFGKYKGKMLGTLPSNYLKWVSKN-LRA 76 (262)
Q Consensus 43 ~li~t~MPFGKYKGr~L~DLPe~YL~Wf~kk-fp~ 76 (262)
+++..+||||||||+.|.|||++||+||.++ ||.
T Consensus 187 ~~~~~~~~fGK~kG~~~~~~~~~y~~w~~~~~~~~ 221 (250)
T PRK06310 187 PIKMKYMPLGKHKGRLFSEIPLEYLQWASKMDFDQ 221 (250)
T ss_pred CcccccccCcccCCCCcccCCHHHHHHHHhCCCCc
Confidence 4667799999999999999999999999776 776
No 4
>PRK06309 DNA polymerase III subunit epsilon; Validated
Probab=98.55 E-value=2.8e-08 Score=86.31 Aligned_cols=28 Identities=43% Similarity=0.872 Sum_probs=26.3
Q ss_pred ccccccccCCCeeeccCChhHHHHHhhc
Q 024816 46 DRVIDFGKYKGKMLGTLPSNYLKWVSKN 73 (262)
Q Consensus 46 ~t~MPFGKYKGr~L~DLPe~YL~Wf~kk 73 (262)
..+||||||||+.+.|||++||.||+++
T Consensus 183 ~~~~~fgk~kg~~~~~~~~~y~~w~~~~ 210 (232)
T PRK06309 183 IFKMPFGKYKGKPLSEVPKSYIAWLEKQ 210 (232)
T ss_pred cceecccccCCEEHHHcCHHHHHHHHcC
Confidence 3489999999999999999999999988
No 5
>PRK07983 exodeoxyribonuclease X; Provisional
Probab=98.35 E-value=1.8e-07 Score=81.94 Aligned_cols=35 Identities=34% Similarity=0.743 Sum_probs=31.1
Q ss_pred hhhcccccccccCCCeeeccC---ChhHHHHHhhcCCC
Q 024816 42 IPATDRVIDFGKYKGKMLGTL---PSNYLKWVSKNLRA 76 (262)
Q Consensus 42 ~~li~t~MPFGKYKGr~L~DL---Pe~YL~Wf~kkfp~ 76 (262)
.|.+..+||||||||+.+.++ |.+||+|+++|.++
T Consensus 167 ~~~~~~~~~fGk~kg~~~~~~~~~~~~yl~wl~~~~~d 204 (219)
T PRK07983 167 RPSLLTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDD 204 (219)
T ss_pred CCccCCCccccCccCcchhhhhhcchHHHHHHHhcccc
Confidence 466788999999999999999 89999999998654
No 6
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=77.73 E-value=0.96 Score=40.55 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.1
Q ss_pred HhcCCCccchhhHHHHHHHhcCCC
Q 024816 89 VLQDPVYKDRIEWEFAENVLTGNS 112 (262)
Q Consensus 89 VL~dp~y~dR~eWe~a~~~l~G~~ 112 (262)
+.+.|.+.||++|||++++|.-|+
T Consensus 132 ~~~~pmS~~rl~WEhIqrvl~e~~ 155 (182)
T COG4567 132 PPENPMSADRLRWEHIQRVLEECE 155 (182)
T ss_pred CCCCCCchhHhhHHHHHHHHHHhC
Confidence 567799999999999999998766
No 7
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.52 E-value=3.8 Score=39.86 Aligned_cols=79 Identities=28% Similarity=0.414 Sum_probs=54.6
Q ss_pred CChhHHHHHHHHHhcCCCccchhhHHHHHHHhcCCCCccccccccccCCcchhhHHHHHHHhcCCCCCCccccccccccc
Q 024816 77 QDFEHWAMLADQVLQDPVYKDRIEWEFAENVLTGNSNDVNKNKNMATNESSVSRLLELSQRFGWDNEDRVGWSKLNFELL 156 (262)
Q Consensus 77 G~lg~Wa~LA~eVL~dp~y~dR~eWe~a~~~l~G~~~~~~~~~~~~~~~~~~~~l~e~serFGWd~~De~gw~k~dF~LL 156 (262)
++-=.|-..|--||+.|+|-+|.--|.....|.-+.|.- + + ...-++|-...|-|+-.| |.+ +|.+.
T Consensus 134 ~~p~~k~~i~tmvle~pfYgqr~p~~q~~~~Le~vtDlf---~-m-----G~A~I~E~~~lf~Ws~~~--g~g--~~~~~ 200 (371)
T KOG1551|consen 134 SKPINKREIATMVLEKPFYGQRVPEEQIIHMLEYVTDLF---K-M-----GRATIQEFVKLFTWSSAD--GLG--NLNLV 200 (371)
T ss_pred cCchhhhcchheeeecccccccCCHHHHHHHHHHHHHHH---H-h-----hHHHHHHHHHhccccccc--Ccc--cceee
Confidence 334467788888999999999986666655555444311 0 0 133478888999995544 444 57899
Q ss_pred cccCCCCCCCcc
Q 024816 157 GTSKGGRIPRIS 168 (262)
Q Consensus 157 GTSkGGrIPR~~ 168 (262)
|-|=||.|--..
T Consensus 201 g~Smgg~~a~~v 212 (371)
T KOG1551|consen 201 GRSMGGDIANQV 212 (371)
T ss_pred eeecccHHHHhh
Confidence 999999985543
No 8
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=44.16 E-value=13 Score=36.93 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=43.3
Q ss_pred chhhcccccccccCCCeeeccCChhHHH--HHhhcCCCCChhHHHHHHHHHhcCCC
Q 024816 41 TIPATDRVIDFGKYKGKMLGTLPSNYLK--WVSKNLRAQDFEHWAMLADQVLQDPV 94 (262)
Q Consensus 41 L~~li~t~MPFGKYKGr~L~DLPe~YL~--Wf~kkfp~G~lg~Wa~LA~eVL~dp~ 94 (262)
..-.+...||-++=|=+.|..++.+|.- |.++.+|. .-|..||.|||.+.+
T Consensus 314 ~l~qlhvclP~~~G~tRll~R~~~dF~~~~~~~~~~~~---~~w~~~a~~vl~e~l 366 (394)
T PLN00095 314 NVEQLHVCLPAKPGLCRLLFRLAFDFVAVPEGAQAAAG---DVWANLAMMVLKEEL 366 (394)
T ss_pred eeeeEEEEEecCCCceEEEEeecccccccHHHhHhchH---HHHHHHHHHHHHHHH
Confidence 4567788999999999999999999954 56667777 899999999999765
No 9
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]
Probab=40.21 E-value=30 Score=33.84 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=53.7
Q ss_pred cceeeeecCCCCCCCCCCcCchhhcccccccccCCCeeeccCCh------hHHHHHhhcC-CCCChhHHHHHHHHHhcCC
Q 024816 21 STLSCSFKPHKIPIITNNPKTIPATDRVIDFGKYKGKMLGTLPS------NYLKWVSKNL-RAQDFEHWAMLADQVLQDP 93 (262)
Q Consensus 21 ~~~~~~f~pn~~~~~~np~~L~~li~t~MPFGKYKGr~L~DLPe------~YL~Wf~kkf-p~G~lg~Wa~LA~eVL~dp 93 (262)
..|++-|+-.+..+. |+.|.+++. +.|+|+.|..=|- .+|-|+..-+ .+|-...|++|++.+|.
T Consensus 130 Gy~a~vYd~~~~~~p--pksL~dL~~-----~~y~~~ii~qdPrtSspGl~fLlW~~svyg~d~~~~~W~kL~~~~v~-- 200 (336)
T COG4143 130 GYFAFVYDKTKLKNP--PKSLKDLVE-----PEYAGKIIYQDPRTSSPGLGFLLWTISVYGEDGAPEAWAKLADNGVT-- 200 (336)
T ss_pred ceEEEEEchHHhcCC--cccHHHhcC-----ccccCcEEecCCCCCCccHHHHHHHHHHhccccHHHHHHHHHhCCeE--
Confidence 345555655444322 255777665 5788888877654 5999999999 99999999999988753
Q ss_pred CccchhhHHHHHH-HhcCCCC
Q 024816 94 VYKDRIEWEFAEN-VLTGNSN 113 (262)
Q Consensus 94 ~y~dR~eWe~a~~-~l~G~~~ 113 (262)
|++. |--+=. |+.|.-.
T Consensus 201 v~~g---WSeaY~aFt~GEap 218 (336)
T COG4143 201 VTKG---WSEAYGAFTKGEAP 218 (336)
T ss_pred ecCc---HHHHHHHHhCCccc
Confidence 4443 444433 4444444
No 10
>PRK11779 sbcB exonuclease I; Provisional
Probab=33.60 E-value=15 Score=36.69 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=46.1
Q ss_pred CcCchhhcccccccccCCCeeeccCCh----hHHHHHhh-cCCCCChhHHHHHHHHHhcCCCccchhhH
Q 024816 38 NPKTIPATDRVIDFGKYKGKMLGTLPS----NYLKWVSK-NLRAQDFEHWAMLADQVLQDPVYKDRIEW 101 (262)
Q Consensus 38 p~~L~~li~t~MPFGKYKGr~L~DLPe----~YL~Wf~k-kfp~G~lg~Wa~LA~eVL~dp~y~dR~eW 101 (262)
-....|++...++||||||....-+|- .|-.|+.= .+. ++..++..|.-+.|-..+|..+.|+
T Consensus 220 ~~~~~p~~~~s~~fg~~~g~~~~v~pl~~hp~n~n~~i~~DL~-~d~~~l~~l~~~~l~~~l~~~~~~l 287 (476)
T PRK11779 220 VPAMKPLVHVSGMFGAERGCTSWVAPLAWHPTNKNAVIVCDLA-GDPSPLLELDADTLRERLYTRRADL 287 (476)
T ss_pred hhccCCceEEeeecccccCceeEEeccccCCCCCCcEEEEECc-CChHHHhcCCHHHHHHHhccChhhc
Confidence 344588899999999999999888874 23323211 122 6778889988888888888887765
No 11
>PF10930 DUF2737: Protein of unknown function (DUF2737); InterPro: IPR020295 The proteins in this entry are uncharacterised.
Probab=29.72 E-value=32 Score=25.88 Aligned_cols=12 Identities=58% Similarity=1.115 Sum_probs=10.6
Q ss_pred CCCCChHHHHHH
Q 024816 243 NPFPGREALLKK 254 (262)
Q Consensus 243 sPFPGRqalL~k 254 (262)
-|||-||.|||+
T Consensus 22 ~PmPsREELlkR 33 (54)
T PF10930_consen 22 KPMPSREELLKR 33 (54)
T ss_pred CCCCCHHHHHhh
Confidence 599999999974
No 12
>KOG3222 consensus Inosine triphosphate pyrophosphatase [Nucleotide transport and metabolism]
Probab=26.05 E-value=45 Score=30.53 Aligned_cols=18 Identities=50% Similarity=0.997 Sum_probs=14.3
Q ss_pred eccCChhHHHHHhhcCCC
Q 024816 59 LGTLPSNYLKWVSKNLRA 76 (262)
Q Consensus 59 L~DLPe~YL~Wf~kkfp~ 76 (262)
|.-||-+|..||++++-.
T Consensus 78 l~GlPGpYiKwFLk~lg~ 95 (195)
T KOG3222|consen 78 LGGLPGPYIKWFLKKLGP 95 (195)
T ss_pred ccCCCcHHHHHHHHHhCc
Confidence 344799999999998544
No 13
>PRK09946 hypothetical protein; Provisional
Probab=21.84 E-value=65 Score=30.77 Aligned_cols=35 Identities=9% Similarity=0.406 Sum_probs=24.5
Q ss_pred hhHHHHHhhcCCCCChhHHHHHHHHHhcCCCccchhhHHHH
Q 024816 64 SNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKDRIEWEFA 104 (262)
Q Consensus 64 e~YL~Wf~kkfp~G~lg~Wa~LA~eVL~dp~y~dR~eWe~a 104 (262)
..=.+||+++||+| +...++++++..+ .|++|--.
T Consensus 15 ~~~yRWFlr~fp~G--g~Y~~v~dALv~~----gr~dwa~s 49 (270)
T PRK09946 15 AVMYRWFLRHFPRG--GSYADIHHALIEE----GYTDWAES 49 (270)
T ss_pred hhHHHHHHHhCCCC--CcHHHHHHHHHHh----hhhhHHHH
Confidence 34569999999998 5667777777665 45656433
No 14
>cd08794 Death_IRAK1 Death domain of Interleukin 1 Receptor Associated Kinase-1. Death Domain (DD) of Interleukin-1 Receptor-Associated Kinase 1 (IRAK1). IRAKs are essential components of innate immunity and inflammation in mammals and other vertebrates. They are involved in signal transduction pathways involving IL-1 and IL-18 receptors, Toll-like receptors, nuclear factor-kappaB (NF-kB), and mitogen-activated protein kinases (MAPKs). IRAKs contain an N-terminal DD domain and a C-terminal kinase domain. IRAK1 is an active kinase and also plays adaptor functions. It binds to the MyD88-IRAK4 complex via its DD, which facilitates its phosphorylation by IRAK4, activating it for further auto-phosphorylation. Hyper-phosphorylated IRAK1 forms a cytosolic complex with TRAF6, leading to the activation of NF-kB and MAPK pathways. IRAK1 is involved in autoimmunity and may be associated with lupus pathogenesis. DDs are protein-protein interaction domains found in a variety of domain architectures.
Probab=21.79 E-value=93 Score=25.27 Aligned_cols=75 Identities=17% Similarity=0.269 Sum_probs=46.7
Q ss_pred eeccCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCccchhhHHHHHHHhcCCCCccccccccccCCcchhhHHHHHHH
Q 024816 58 MLGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKDRIEWEFAENVLTGNSNDVNKNKNMATNESSVSRLLELSQR 137 (262)
Q Consensus 58 ~L~DLPe~YL~Wf~kkfp~G~lg~Wa~LA~eVL~dp~y~dR~eWe~a~~~l~G~~~~~~~~~~~~~~~~~~~~l~e~ser 137 (262)
.|-+||+.-+.=|.+.++...--.|..+|-.|+.|- .|=.++|+ .|.-- ....-+=.+.-.-+.+|+.+-++
T Consensus 2 ~Ly~lP~~vm~~fc~~MDsls~~dW~~fAS~ii~dq-----telR~~E~--~~s~T-~elmw~W~~Rn~tV~~Ll~iL~~ 73 (84)
T cd08794 2 FLYELPPSVMWRFCLVMDSLSDLDWTRFASEIIKDQ-----TELRLLEQ--SGRRT-DWVMWRWENRNGRVGELLDILER 73 (84)
T ss_pred ccccCCHHHHHHHHHHHcccccccHHHHHHHHhccH-----HHHHHHHH--cCCcH-HHHHHHHHhcccHHHHHHHHHHH
Confidence 467899887777888889988899999999999874 44444554 22110 00000001112347778777777
Q ss_pred hcC
Q 024816 138 FGW 140 (262)
Q Consensus 138 FGW 140 (262)
.++
T Consensus 74 L~l 76 (84)
T cd08794 74 LQL 76 (84)
T ss_pred hhh
Confidence 664
No 15
>COG4675 MdpB Microcystin-dependent protein [Function unknown]
Probab=21.04 E-value=36 Score=30.52 Aligned_cols=12 Identities=58% Similarity=0.933 Sum_probs=10.8
Q ss_pred ccccccccCCCC
Q 024816 152 NFELLGTSKGGR 163 (262)
Q Consensus 152 dF~LLGTSkGGr 163 (262)
=|.||||.|||+
T Consensus 36 lfslLGttyGGd 47 (170)
T COG4675 36 LFSLLGTTYGGD 47 (170)
T ss_pred HHHHhCccccCC
Confidence 489999999996
No 16
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=20.70 E-value=73 Score=28.80 Aligned_cols=66 Identities=20% Similarity=0.251 Sum_probs=45.4
Q ss_pred ceeeeecCCCCCCCCCCcCchhhcccccccccCCCeeeccCChhHHHH-HhhcCCCCChhHHHHHHHHHhcCCCc
Q 024816 22 TLSCSFKPHKIPIITNNPKTIPATDRVIDFGKYKGKMLGTLPSNYLKW-VSKNLRAQDFEHWAMLADQVLQDPVY 95 (262)
Q Consensus 22 ~~~~~f~pn~~~~~~np~~L~~li~t~MPFGKYKGr~L~DLPe~YL~W-f~kkfp~G~lg~Wa~LA~eVL~dp~y 95 (262)
.|-..-||+.|.. .+-..|..+.... =|--|+.+ +.|..| +.++|..+++-.|++||.++==+|--
T Consensus 20 ~FilyCNP~vP~~-tdT~~Lr~aFr~p---PkS~Gk~F----s~~~Lf~LI~k~~~keikTW~~La~~LGVepp~ 86 (175)
T PF09441_consen 20 AFILYCNPAVPLD-TDTSELREAFRSP---PKSDGKSF----STFTLFELIRKLESKEIKTWAQLALELGVEPPD 86 (175)
T ss_pred eeeeecCCCCCCC-CCHHHHHHHhcCC---CCcCCccc----hHHHHHHHHHHHhhhhHhHHHHHHHHhCCCCCC
Confidence 4445558988776 4555565554432 24455555 358888 66889999999999999998666654
Done!