Query 024816
Match_columns 262
No_of_seqs 118 out of 274
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 14:54:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qqa_A CMER; alpha-helical, he 31.2 39 0.0013 25.2 3.2 31 228-258 42-73 (216)
2 2d0t_A Indoleamine 2,3-dioxyge 24.2 42 0.0014 31.3 2.8 51 57-108 30-86 (406)
3 4aez_C MAD3, mitotic spindle c 23.5 56 0.0019 28.6 3.3 35 65-99 77-117 (223)
4 4f0j_A Probable hydrolytic enz 23.1 21 0.00071 27.4 0.4 70 78-164 58-127 (315)
5 3bam_A R. bamhi, protein (rest 22.2 26 0.00091 31.0 1.0 44 122-170 51-99 (213)
6 3fpf_A Mtnas, putative unchara 21.2 41 0.0014 30.2 2.0 30 83-112 50-93 (298)
7 4a1g_A Mitotic checkpoint seri 21.0 81 0.0028 26.0 3.6 34 65-99 31-68 (152)
8 3esl_A Checkpoint serine/threo 19.4 36 0.0012 29.5 1.2 35 65-99 35-77 (202)
9 1ofc_X ISWI protein; nuclear p 18.6 54 0.0018 30.0 2.2 54 43-96 199-252 (304)
10 3kkc_A TETR family transcripti 17.8 1.2E+02 0.0041 21.9 3.6 31 228-258 35-66 (177)
No 1
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=31.16 E-value=39 Score=25.22 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=24.3
Q ss_pred ccchhccccc-ccccCCCCCChHHHHHHHHhc
Q 024816 228 LRSEKRDQDL-TVEIHNPFPGREALLKKVMSR 258 (262)
Q Consensus 228 ~~~ve~~~~~-~~~i~sPFPGRqalL~kv~~~ 258 (262)
++++-++-.+ +.-|-.=||+|++|+..|+.+
T Consensus 42 ~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~ 73 (216)
T 3qqa_A 42 LSDIIKLSGGSYSNIYDGFKSKEGLFFEILDD 73 (216)
T ss_dssp HHHHHHHHTTSCCSSSCSCCSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHhcCCHHHHHHHHHHH
Confidence 6666666555 567788999999999988865
No 2
>2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo sapiens} SCOP: a.266.1.2 PDB: 2d0u_A*
Probab=24.17 E-value=42 Score=31.33 Aligned_cols=51 Identities=22% Similarity=0.283 Sum_probs=39.6
Q ss_pred eeeccCChhHHHH--HhhcCC----CCChhHHHHHHHHHhcCCCccchhhHHHHHHHh
Q 024816 57 KMLGTLPSNYLKW--VSKNLR----AQDFEHWAMLADQVLQDPVYKDRIEWEFAENVL 108 (262)
Q Consensus 57 r~L~DLPe~YL~W--f~kkfp----~G~lg~Wa~LA~eVL~dp~y~dR~eWe~a~~~l 108 (262)
-.+..||+.|-.| +++++| .|.+..+-+ ..-||+...-.+..||..|+-+|
T Consensus 30 ~Pl~~Lp~~~~~we~i~~~lp~Ll~~~~~r~~V~-~LP~l~~~~l~~~~e~r~A~~~L 86 (406)
T 2d0t_A 30 NPQENLPDFYNDWMFIAKHLPDLIESGQLRERVE-KLNMLSIDHLTDHKSQRLARLVL 86 (406)
T ss_dssp SCCCCCCGGGHHHHHHHHTHHHHHHTTCHHHHHH-HCCCCCSTTCCSHHHHHHHHHHH
T ss_pred CchhhcchhhHHHHHHHHHHHHHHhcCcHHHHHH-hCCCCCccccCCHHHHHHHHHHH
Confidence 4568899999999 677776 777777765 45678777777888999998765
No 3
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.54 E-value=56 Score=28.63 Aligned_cols=35 Identities=23% Similarity=0.595 Sum_probs=24.6
Q ss_pred hHHHHHhhcCCCCCh------hHHHHHHHHHhcCCCccchh
Q 024816 65 NYLKWVSKNLRAQDF------EHWAMLADQVLQDPVYKDRI 99 (262)
Q Consensus 65 ~YL~Wf~kkfp~G~l------g~Wa~LA~eVL~dp~y~dR~ 99 (262)
.|+.|+..++|.|.. .-.-.......+|+.|++-+
T Consensus 77 ~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~ 117 (223)
T 4aez_C 77 DYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDV 117 (223)
T ss_dssp HHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCH
T ss_pred HHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCH
Confidence 499999999999852 13344445557888998543
No 4
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa}
Probab=23.11 E-value=21 Score=27.40 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=35.2
Q ss_pred ChhHHHHHHHHHhcCCCccchhhHHHHHHHhcCCCCccccccccccCCcchhhHHHHHHHhcCCCCCCcccccccccccc
Q 024816 78 DFEHWAMLADQVLQDPVYKDRIEWEFAENVLTGNSNDVNKNKNMATNESSVSRLLELSQRFGWDNEDRVGWSKLNFELLG 157 (262)
Q Consensus 78 ~lg~Wa~LA~eVL~dp~y~dR~eWe~a~~~l~G~~~~~~~~~~~~~~~~~~~~l~e~serFGWd~~De~gw~k~dF~LLG 157 (262)
....|..++..+.+.-+-.-.++ +.|...+.........-..-+..+.++.+.++.+ .+-|+|
T Consensus 58 ~~~~~~~~~~~l~~~g~~v~~~d-------~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~G 120 (315)
T 4f0j_A 58 CAGTWERTIDVLADAGYRVIAVD-------QVGFCKSSKPAHYQYSFQQLAANTHALLERLGVA----------RASVIG 120 (315)
T ss_dssp CGGGGHHHHHHHHHTTCEEEEEC-------CTTSTTSCCCSSCCCCHHHHHHHHHHHHHHTTCS----------CEEEEE
T ss_pred cchHHHHHHHHHHHCCCeEEEee-------cCCCCCCCCCCccccCHHHHHHHHHHHHHHhCCC----------ceEEEE
Confidence 34567788777665422221111 1344433221110111122244466666666532 478999
Q ss_pred ccCCCCC
Q 024816 158 TSKGGRI 164 (262)
Q Consensus 158 TSkGGrI 164 (262)
+|-||-|
T Consensus 121 ~S~Gg~~ 127 (315)
T 4f0j_A 121 HSMGGML 127 (315)
T ss_dssp ETHHHHH
T ss_pred ecHHHHH
Confidence 9999965
No 5
>3bam_A R. bamhi, protein (restriction endonuclease bamhi); hydrolase, phosphodiesterase, complex (endonuclease/DNA), protein/DNA; HET: DNA; 1.80A {Bacillus amyloliquefaciens} SCOP: c.52.1.3 PDB: 1bhm_A* 1bam_A* 2bam_A* 1esg_A*
Probab=22.19 E-value=26 Score=31.02 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=33.5
Q ss_pred ccCCcchhhH-----HHHHHHhcCCCCCCccccccccccccccCCCCCCCcchh
Q 024816 122 ATNESSVSRL-----LELSQRFGWDNEDRVGWSKLNFELLGTSKGGRIPRISER 170 (262)
Q Consensus 122 ~~~~~~~~~l-----~e~serFGWd~~De~gw~k~dF~LLGTSkGGrIPR~~~~ 170 (262)
+.+++.|.|+ ..+...|||-++- +||+..|++.|+|.|-=...-
T Consensus 51 rk~gNGVKPIKe~CM~~L~d~~GW~LE~-----~LdI~~~a~kkPGPIDA~k~i 99 (213)
T 3bam_A 51 EKNCNGVVPIKELCYTLLEDTYNWYREK-----PLDILKLEKKKGGPIDVYKEF 99 (213)
T ss_dssp STTCBCCGGGGHHHHHHHHHTTCCEEEE-----CCHHHHTTSCCCCCEEEEEEE
T ss_pred ccCCCCccchHHHHHHHhhhccCceeee-----eeccccccccCCCCceEEEEc
Confidence 3346778884 4566789999885 799999999999998655544
No 6
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=21.18 E-value=41 Score=30.17 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCCcc--------------chhhHHHHHHHhcCCC
Q 024816 83 AMLADQVLQDPVYK--------------DRIEWEFAENVLTGNS 112 (262)
Q Consensus 83 a~LA~eVL~dp~y~--------------dR~eWe~a~~~l~G~~ 112 (262)
.++|++||.||--. +..|+.+|++++.|.+
T Consensus 50 ~~~~~~vl~~~~~~~l~~~~~~~y~~~~~~~E~~wa~~l~~~~~ 93 (298)
T 3fpf_A 50 FESAKHILDDAEMNHALSLIRKFYVNLGMKLEMEKAQEVIESDS 93 (298)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 57899999999654 7899999999999854
No 7
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.01 E-value=81 Score=25.96 Aligned_cols=34 Identities=21% Similarity=0.461 Sum_probs=23.4
Q ss_pred hHHHHHhhcCCCCChhHHHHHHH----HHhcCCCccchh
Q 024816 65 NYLKWVSKNLRAQDFEHWAMLAD----QVLQDPVYKDRI 99 (262)
Q Consensus 65 ~YL~Wf~kkfp~G~lg~Wa~LA~----eVL~dp~y~dR~ 99 (262)
.|+.|+.+++|.|.-. ...|-. ...+|+.|++-+
T Consensus 31 ~YI~W~e~~~P~g~~~-l~~lLErc~~~f~~~~~YknD~ 68 (152)
T 4a1g_A 31 RYIQWVEENFPENKEY-LITLLEHLMKEFLDKKKYHNDP 68 (152)
T ss_dssp HHHHHHHTTCSSCTHH-HHHHHHHHHHHHTTCGGGTTCH
T ss_pred HHHHHHHHHcCCCchh-HHHHHHHHHHHhcccccccCCH
Confidence 5999999999999753 434322 334788888543
No 8
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=19.40 E-value=36 Score=29.50 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=25.7
Q ss_pred hHHHHHhhcCCCCCh--------hHHHHHHHHHhcCCCccchh
Q 024816 65 NYLKWVSKNLRAQDF--------EHWAMLADQVLQDPVYKDRI 99 (262)
Q Consensus 65 ~YL~Wf~kkfp~G~l--------g~Wa~LA~eVL~dp~y~dR~ 99 (262)
.|+.|+...+|.|.. .-.-.......+|+.|++-+
T Consensus 35 ~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~ 77 (202)
T 3esl_A 35 DYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDP 77 (202)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCH
T ss_pred HHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCH
Confidence 499999999999875 23444455677899999543
No 9
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=18.64 E-value=54 Score=30.01 Aligned_cols=54 Identities=17% Similarity=0.333 Sum_probs=44.6
Q ss_pred hhcccccccccCCCeeeccCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCcc
Q 024816 43 PATDRVIDFGKYKGKMLGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYK 96 (262)
Q Consensus 43 ~li~t~MPFGKYKGr~L~DLPe~YL~Wf~kkfp~G~lg~Wa~LA~eVL~dp~y~ 96 (262)
|....++.||..+|+.+.+.-.-||.|++.++=-..=+.|-.+-++|...|.++
T Consensus 199 P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~Fr 252 (304)
T 1ofc_X 199 PFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFR 252 (304)
T ss_dssp HHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGT
T ss_pred cHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchh
Confidence 344556788999999999888889999999855433489999999999999887
No 10
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=17.84 E-value=1.2e+02 Score=21.85 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=23.0
Q ss_pred ccchhccccc-ccccCCCCCChHHHHHHHHhc
Q 024816 228 LRSEKRDQDL-TVEIHNPFPGREALLKKVMSR 258 (262)
Q Consensus 228 ~~~ve~~~~~-~~~i~sPFPGRqalL~kv~~~ 258 (262)
.+++-++-.+ +.-|-.=|+.|++||..++.+
T Consensus 35 v~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 66 (177)
T 3kkc_A 35 VQDVIGLANVGRSTFYSHYESKEVLLKELCED 66 (177)
T ss_dssp HHHHHHHHCCCHHHHTTTCSSTHHHHHHHHHH
T ss_pred HHHHHHHhCCcHhhHHHHcCCHHHHHHHHHHH
Confidence 5666655555 445678899999999988764
Done!