Query 024816
Match_columns 262
No_of_seqs 118 out of 274
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 14:54:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024816.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024816hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ofcx2 a.4.1.13 (X:851-978) S 35.4 8.8 0.00064 29.5 2.2 54 43-96 36-89 (128)
2 d2rk5a1 d.145.1.4 (A:5-88) Put 29.3 8.8 0.00064 25.9 1.2 37 128-170 13-52 (84)
3 d1zk8a1 a.4.1.9 (A:6-77) Trans 20.6 22 0.0016 22.7 1.8 31 228-258 26-57 (72)
4 d2r2za1 d.145.1.4 (A:5-88) Put 19.2 18 0.0013 24.5 1.2 37 128-170 16-55 (84)
5 d1wdkc1 c.95.1.1 (C:2-263) Fat 18.0 26 0.0019 28.3 2.0 34 36-69 2-35 (262)
6 d1v37a_ c.60.1.1 (A:) Alpha-ri 17.5 51 0.0037 24.2 3.5 40 48-89 74-117 (171)
7 d2o1ra1 d.145.1.4 (A:1-78) Hyp 16.9 29 0.0021 23.0 1.8 37 128-170 13-52 (78)
8 d2i10a1 a.4.1.9 (A:10-78) Puta 16.8 22 0.0016 22.7 1.1 19 240-258 36-54 (69)
9 d2p13a1 d.145.1.4 (A:431-515) 16.4 26 0.0019 23.7 1.4 39 128-170 18-59 (85)
10 d2fx0a1 a.4.1.9 (A:4-76) Hemol 15.7 24 0.0018 22.9 1.1 31 228-258 27-58 (73)
No 1
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=35.40 E-value=8.8 Score=29.46 Aligned_cols=54 Identities=17% Similarity=0.333 Sum_probs=47.2
Q ss_pred hhcccccccccCCCeeeccCChhHHHHHhhcCCCCChhHHHHHHHHHhcCCCcc
Q 024816 43 PATDRVIDFGKYKGKMLGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYK 96 (262)
Q Consensus 43 ~li~t~MPFGKYKGr~L~DLPe~YL~Wf~kkfp~G~lg~Wa~LA~eVL~dp~y~ 96 (262)
|.....+.||.++|+...+.-.-||.=|+.++--|.-.-|..+-++|..+|.++
T Consensus 36 P~~eL~i~y~~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~Fr 89 (128)
T d1ofcx2 36 PFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFR 89 (128)
T ss_dssp HHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGT
T ss_pred hHHHhhhhccccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchh
Confidence 556678889999999988888889999998877777778999999999999987
No 2
>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}
Probab=29.29 E-value=8.8 Score=25.90 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=28.0
Q ss_pred hhhHHHHHHHhcCCCCCCcccccccccccc---ccCCCCCCCcchh
Q 024816 128 VSRLLELSQRFGWDNEDRVGWSKLNFELLG---TSKGGRIPRISER 170 (262)
Q Consensus 128 ~~~l~e~serFGWd~~De~gw~k~dF~LLG---TSkGGrIPR~~~~ 170 (262)
.-+|-++.+.|||+++++ |++=|| ..+=|+||..++.
T Consensus 13 ~~~l~dl~~~l~~~l~~~------~~dTlgG~v~~~lg~iP~~Ge~ 52 (84)
T d2rk5a1 13 TMTLNDFNEYFETDLESD------NVDTIAGFYLTGVGTIPSQEEK 52 (84)
T ss_dssp TSBHHHHHHHHTCCCCCT------TCCBHHHHHHHHHCSCCCSSSC
T ss_pred eeEHHHHHHHhCCCcccc------cchhHHHHHHHHhCcCCCCCCE
Confidence 556999999999999764 444443 5677899998874
No 3
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=20.62 E-value=22 Score=22.70 Aligned_cols=31 Identities=16% Similarity=0.120 Sum_probs=22.2
Q ss_pred ccchhccccc-ccccCCCCCChHHHHHHHHhc
Q 024816 228 LRSEKRDQDL-TVEIHNPFPGREALLKKVMSR 258 (262)
Q Consensus 228 ~~~ve~~~~~-~~~i~sPFPGRqalL~kv~~~ 258 (262)
.+++-++..+ +..+-+=||.|++|+..++.+
T Consensus 26 ~~~Ia~~agvs~~slY~yF~~k~~L~~~~~~~ 57 (72)
T d1zk8a1 26 LASLAQTLGVRSPSLYNHVKGLQDVRKNLGIY 57 (72)
T ss_dssp HHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHCcCHHHHHHHHHHH
Confidence 4444444444 445678899999999999875
No 4
>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}
Probab=19.20 E-value=18 Score=24.47 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=27.2
Q ss_pred hhhHHHHHHHhcCCCCCCcccccccccccc---ccCCCCCCCcchh
Q 024816 128 VSRLLELSQRFGWDNEDRVGWSKLNFELLG---TSKGGRIPRISER 170 (262)
Q Consensus 128 ~~~l~e~serFGWd~~De~gw~k~dF~LLG---TSkGGrIPR~~~~ 170 (262)
.-+|-++.+.||+++.++ |++=|| .++=|+||..++.
T Consensus 16 ~~~l~dl~~~l~~~l~~~------~~~TigG~i~~~lg~iP~~Ge~ 55 (84)
T d2r2za1 16 RMLIDEFNEVFETDLHMS------DVDTMAGYLITALGTIPDEGEK 55 (84)
T ss_dssp TSBHHHHHHHHTCCCCCT------TCCBHHHHHHHHHSSCCCTTCC
T ss_pred eCCHHHHHHHHCcCCCCc------cchhHHHHHHHHhCcCCCCCCE
Confidence 456999999999998764 233333 5666999998873
No 5
>d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]}
Probab=17.96 E-value=26 Score=28.34 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=22.3
Q ss_pred CCCcCchhhcccccccccCCCeeeccCChhHHHH
Q 024816 36 TNNPKTIPATDRVIDFGKYKGKMLGTLPSNYLKW 69 (262)
Q Consensus 36 ~np~~L~~li~t~MPFGKYKGr~L~DLPe~YL~W 69 (262)
|||....=+--..-||||++|..+.++.+.-|-.
T Consensus 2 ~n~r~v~Iv~a~RTP~g~~~gg~~~~~~~~dL~~ 35 (262)
T d1wdkc1 2 LNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSA 35 (262)
T ss_dssp CCTTCEEEEEEEECCCEETTTCTTTTCCHHHHHH
T ss_pred CCCCcEEEEeeeeCceeCCCCccccCCCHHHHHH
Confidence 5554332222334689999999999997765554
No 6
>d1v37a_ c.60.1.1 (A:) Alpha-ribazole-5'-phosphate phosphatase {Thermus thermophilus [TaxId: 274]}
Probab=17.48 E-value=51 Score=24.16 Aligned_cols=40 Identities=23% Similarity=0.354 Sum_probs=30.4
Q ss_pred ccccccCCCeeeccCChhHHHHHhhc----CCCCChhHHHHHHHHH
Q 024816 48 VIDFGKYKGKMLGTLPSNYLKWVSKN----LRAQDFEHWAMLADQV 89 (262)
Q Consensus 48 ~MPFGKYKGr~L~DLPe~YL~Wf~kk----fp~G~lg~Wa~LA~eV 89 (262)
-+.||.+-|+.+.++...|-.|+.+. .|.| +.|+++.+.|
T Consensus 74 E~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~p~g--Es~~~~~~Rv 117 (171)
T d1v37a_ 74 EIHFGALEGALWETLDPRYKEALLRFQGFHPPGG--ESLSAFQERV 117 (171)
T ss_dssp CCCCGGGTTCBGGGSCHHHHHHHHTTCSCCCTTS--CCHHHHHHHH
T ss_pred eccchhhhhcchhhhhhhhhhhhccccccCCCCc--cchhhHHHHH
Confidence 36899999999999999998887654 3444 5577775555
No 7
>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]}
Probab=16.85 E-value=29 Score=23.05 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=26.4
Q ss_pred hhhHHHHHHHhcCCCCCCcccccccccccc---ccCCCCCCCcchh
Q 024816 128 VSRLLELSQRFGWDNEDRVGWSKLNFELLG---TSKGGRIPRISER 170 (262)
Q Consensus 128 ~~~l~e~serFGWd~~De~gw~k~dF~LLG---TSkGGrIPR~~~~ 170 (262)
.-+|-++.+.|||++.++ |++=|| ..+=|+||..++.
T Consensus 13 ~~~l~dl~~~l~~~l~~~------~~~Ti~G~v~~~lg~iP~~Ge~ 52 (78)
T d2o1ra1 13 SANLRDLNKMFNWELDTE------DARTFNGLILEHLEEIPDEGTI 52 (78)
T ss_dssp TCBHHHHHHHHCCCCCCS------SCSBHHHHHHHHCSSCCCTTCE
T ss_pred eCCHHHHHHHHCCCCCCc------cchHHHHHHHHHhCcCCCCCCE
Confidence 445999999999998754 333333 4566899987763
No 8
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=16.79 E-value=22 Score=22.69 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=15.4
Q ss_pred ccCCCCCChHHHHHHHHhc
Q 024816 240 EIHNPFPGREALLKKVMSR 258 (262)
Q Consensus 240 ~i~sPFPGRqalL~kv~~~ 258 (262)
-|-.=||+|++|+..|+.+
T Consensus 36 ~~Y~~F~~K~~L~~~~~~~ 54 (69)
T d2i10a1 36 SLYAAFGSKRDLFEKTLDR 54 (69)
T ss_dssp HHHHHHCSHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHH
Confidence 4456699999999999875
No 9
>d2p13a1 d.145.1.4 (A:431-515) Uncharacterized protein NE2227 {Nitrosomonas europaea [TaxId: 915]}
Probab=16.42 E-value=26 Score=23.66 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=26.6
Q ss_pred hhhHHHHHHHhcCCCCCCcccccccccccc---ccCCCCCCCcchh
Q 024816 128 VSRLLELSQRFGWDNEDRVGWSKLNFELLG---TSKGGRIPRISER 170 (262)
Q Consensus 128 ~~~l~e~serFGWd~~De~gw~k~dF~LLG---TSkGGrIPR~~~~ 170 (262)
.-+|-++.+.|||++.++.. |++=|| .++=|+||..++.
T Consensus 18 ~~~l~dl~~~l~~~l~~e~~----~~~TlgG~i~~~lg~iP~~Ge~ 59 (85)
T d2p13a1 18 WISIRKASNLLEHDLVDEAE----RYSTLGGYLLWQFGYIPAAGEQ 59 (85)
T ss_dssp TSBHHHHHHHHTSCCCCTTC----CCCBHHHHHHHHHSSCCCTTCE
T ss_pred cCCHHHHHHHHCCCCCCccc----cceEHHHHHHHHhCcCCCCCCE
Confidence 55699999999999865432 333222 3555899988773
No 10
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=15.74 E-value=24 Score=22.94 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=21.8
Q ss_pred ccchhccccc-ccccCCCCCChHHHHHHHHhc
Q 024816 228 LRSEKRDQDL-TVEIHNPFPGREALLKKVMSR 258 (262)
Q Consensus 228 ~~~ve~~~~~-~~~i~sPFPGRqalL~kv~~~ 258 (262)
.+++-+.-.+ ..-|-.=||+|+.|+..|+.+
T Consensus 27 i~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~~ 58 (73)
T d2fx0a1 27 IQEIAKEAKVNVAMASYYFNGKENLYYEVFKK 58 (73)
T ss_dssp HHHHHHHHTSCHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHCcChhHHHHHCcCHHHHHHHHHHH
Confidence 4555444333 445667799999999999976
Done!