BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024818
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 210 bits (535), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 103/172 (59%), Positives = 126/172 (73%), Gaps = 3/172 (1%)
Query: 90 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVI 149
KVT KVYFD+ IG+ + GR++ GL+G VP+T +NF AL TGEKGFGYK S FHRVI
Sbjct: 3 KVTVKVYFDLRIGD---EDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVI 59
Query: 150 KDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTV 209
KDFMIQ SIYG F DENFKL H GPG VSMANAG +TNGSQFFI TV
Sbjct: 60 KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 119
Query: 210 KTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGELPMSE 261
KT WLD +HVVFG+VLEGM++V+ +ES +TD D+P K V+I+DCG++ + +
Sbjct: 120 KTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEK 171
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 210 bits (535), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 103/172 (59%), Positives = 126/172 (73%), Gaps = 3/172 (1%)
Query: 90 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVI 149
KVT KVYFD+ IG+ + GR++ GL+G VP+T +NF AL TGEKGFGYK S FHRVI
Sbjct: 13 KVTVKVYFDLRIGD---EDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVI 69
Query: 150 KDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTV 209
KDFMIQ SIYG F DENFKL H GPG VSMANAG +TNGSQFFI TV
Sbjct: 70 KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 129
Query: 210 KTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGELPMSE 261
KT WLD +HVVFG+VLEGM++V+ +ES +TD D+P K V+I+DCG++ + +
Sbjct: 130 KTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEK 181
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 209 bits (533), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 104/172 (60%), Positives = 126/172 (73%), Gaps = 3/172 (1%)
Query: 90 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVI 149
KVT KVYFD+ IG+ + GR+VIGL+G VP+T +NF AL TGEKGFGYK S FHRVI
Sbjct: 10 KVTVKVYFDLRIGD---EDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVI 66
Query: 150 KDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTV 209
KDFMIQ SIYG F DENFKL H GPG VSMANAG +TNGSQFFI TV
Sbjct: 67 KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 126
Query: 210 KTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGELPMSE 261
KT WLD +HVVFG+VLEGM++V+ +E+ +TD D+P K V I+DCG++ + +
Sbjct: 127 KTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEK 178
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 104/172 (60%), Positives = 126/172 (73%), Gaps = 3/172 (1%)
Query: 90 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVI 149
KVT KVYFD+ IG+ + GR+VIGL+G VP+T +NF AL TGEKGFGYK S FHRVI
Sbjct: 10 KVTVKVYFDLRIGD---EDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVI 66
Query: 150 KDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTV 209
KDFMIQ SIYG F DENFKL H GPG VSMANAG +TNGSQFFI TV
Sbjct: 67 KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 126
Query: 210 KTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGELPMSE 261
KT WLD +HVVFG+VLEGM++V+ +E+ +TD D+P K V I+DCG++ + +
Sbjct: 127 KTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEK 178
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/163 (64%), Positives = 119/163 (73%), Gaps = 4/163 (2%)
Query: 95 VYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMI 154
VY DV + GK GR+V+ L D VP+TAENFRALCTGEKGFGYKGSTFHRVI FM
Sbjct: 7 VYLDV---DANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 63
Query: 155 QXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWL 214
Q SIYG F DENF L H+GPGV+SMANAGPNTNGSQFFICT+KT WL
Sbjct: 64 QAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 123
Query: 215 DQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
D +HVVFG V+EGMD+VK IES + G R KK+VI+DCG+L
Sbjct: 124 DGKHVVFGHVIEGMDVVKKIESFGSKSG-RTSKKIVITDCGQL 165
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/163 (64%), Positives = 119/163 (73%), Gaps = 4/163 (2%)
Query: 95 VYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMI 154
VY DV + GK GR+V+ L D VP+TAENFRALCTGEKGFGYKGSTFHRVI FM
Sbjct: 6 VYLDV---DANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 62
Query: 155 QXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWL 214
Q SIYG F DENF L H+GPGV+SMANAGPNTNGSQFFICT+KT WL
Sbjct: 63 QAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 122
Query: 215 DQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
D +HVVFG V+EGMD+VK IES + G R KK+VI+DCG+L
Sbjct: 123 DGKHVVFGHVIEGMDVVKKIESFGSKSG-RTSKKIVITDCGQL 164
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/163 (64%), Positives = 119/163 (73%), Gaps = 4/163 (2%)
Query: 95 VYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMI 154
VY DV + GK GR+V+ L D VP+TAENFRALCTGEKGFGYKGSTFHRVI FM
Sbjct: 5 VYLDV---DANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 61
Query: 155 QXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWL 214
Q SIYG F DENF L H+GPGV+SMANAGPNTNGSQFFICT+KT WL
Sbjct: 62 QAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 121
Query: 215 DQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
D +HVVFG V+EGMD+VK IES + G R KK+VI+DCG+L
Sbjct: 122 DGKHVVFGHVIEGMDVVKKIESFGSKSG-RTSKKIVITDCGQL 163
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/163 (64%), Positives = 119/163 (73%), Gaps = 4/163 (2%)
Query: 95 VYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMI 154
VY DV + GK GR+V+ L D VP+TAENFRALCTGEKGFGYKGSTFHRVI FM
Sbjct: 6 VYLDV---DANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 62
Query: 155 QXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWL 214
Q SIYG F DENF L H+GPGV+SMANAGPNTNGSQFFICT+KT WL
Sbjct: 63 QAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 122
Query: 215 DQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
D +HVVFG V+EGMD+VK IES + G R KK+VI+DCG+L
Sbjct: 123 DGKHVVFGHVIEGMDVVKKIESFGSKSG-RTSKKIVITDCGQL 164
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 201 bits (510), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 100/168 (59%), Positives = 123/168 (73%), Gaps = 6/168 (3%)
Query: 91 VTNKVYFDVSIGN-PVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVI 149
VT+KVYFD++IG+ PVG R+VIGL+G+DVP+T ENF+ L +GE GFGYKGS FHRVI
Sbjct: 4 VTDKVYFDITIGDEPVG----RVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVI 59
Query: 150 KDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTV 209
++FMIQ SIYG F DEN K+ H G VSMANAGPN+NGSQFF+ T
Sbjct: 60 RNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTA 118
Query: 210 KTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
TPWLD RHVVFG+V+EGMD+VK +E+ +T D+P K V I+DCG L
Sbjct: 119 PTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 123/172 (71%), Gaps = 11/172 (6%)
Query: 93 NKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTF 145
+KV+FD++IG GK +GRIV+ LY D VP+TA NFRALCTGE G G +KGS F
Sbjct: 4 SKVFFDITIG---GKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKF 60
Query: 146 HRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFF 205
HR+I +FMIQ SIYG F DENFK H GPGV+SMANAGPNTNGSQFF
Sbjct: 61 HRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFF 120
Query: 206 ICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
+CTVKT WLD +HVVFG+V+EG+D+VK +ES + G +P K +I+DCG+L
Sbjct: 121 LCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSG-KPVKDCMIADCGQL 171
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/167 (61%), Positives = 117/167 (70%), Gaps = 3/167 (1%)
Query: 91 VTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIK 150
VT+KV+FDV IG+ K GRIVIGL+G+ VP+T ENF AL TGEKG+GYKGS FHRVIK
Sbjct: 6 VTDKVFFDVRIGD---KDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIK 62
Query: 151 DFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVK 210
DFMIQ SIYG TF DENFKL H G G VSMANAGP+TNGSQFFI K
Sbjct: 63 DFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTK 122
Query: 211 TPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
WLD +HVVFG+VL+GM +V IE Q TD DRP I + G++
Sbjct: 123 PTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKI 169
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 194 bits (492), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 100/171 (58%), Positives = 116/171 (67%), Gaps = 3/171 (1%)
Query: 90 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVI 149
KVT++VYFD+ IG GK GRIVIGL+G VP+TA NF L KG GY GS FHRVI
Sbjct: 4 KVTDRVYFDMEIG---GKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVI 60
Query: 150 KDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTV 209
DFMIQ SIYG F DENFKL H G G +SMANAG +TNGSQFFI TV
Sbjct: 61 ADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTV 120
Query: 210 KTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGELPMS 260
KTPWLD RHVVFG++LEGMD+V+ IE E GDRP + V+I+ G + +
Sbjct: 121 KTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVD 171
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 118/172 (68%), Gaps = 6/172 (3%)
Query: 87 LQSKVTNKVYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTF 145
Q V V+FD+++ G P+G R+ L+ D VP+TAENFRAL TGEKGFGYKGS F
Sbjct: 17 FQGMVNPTVFFDIAVDGEPLG----RVSFELFADKVPKTAENFRALSTGEKGFGYKGSCF 72
Query: 146 HRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFF 205
HR+I FM Q SIYG F+DENF L H GPG++SMANAGPNTNGSQFF
Sbjct: 73 HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 132
Query: 206 ICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
ICT KT WLD +HVVFG+V EGM+IV+ +E + R + KK+ I+DCG+L
Sbjct: 133 ICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 183
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/169 (59%), Positives = 116/169 (68%), Gaps = 3/169 (1%)
Query: 91 VTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIK 150
VT KV+FDV IG+ K GRIVIGL+G VP+T ENF AL TGEKG+GYKGS FHRVIK
Sbjct: 14 VTAKVFFDVRIGD---KDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIK 70
Query: 151 DFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVK 210
DFMIQ SIYG TF DENFKL H G G VSMANAGP+TNGSQFFI K
Sbjct: 71 DFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTK 130
Query: 211 TPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGELPM 259
WLD +HVVFG+V++GM +V IE Q TD DRP I + G++ +
Sbjct: 131 PTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKIDV 179
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 191 bits (486), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 116/164 (70%), Gaps = 6/164 (3%)
Query: 95 VYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFM 153
V+FD+++ G P+G R+ L+ D VP+TAENFRAL TGEKGFGYKGS FHR+I FM
Sbjct: 6 VFFDIAVDGEPLG----RVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 154 IQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPW 213
Q SIYG F+DENF L H GPG++SMANAGPNTNGSQFFICT KT W
Sbjct: 62 CQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
LD +HVVFG+V EGM+IV+ +E + R + KK+ I+DCG+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 164
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 191 bits (485), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 116/164 (70%), Gaps = 6/164 (3%)
Query: 95 VYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFM 153
V+FD+++ G P+G R+ L+ D VP+TAENFRAL TGEKGFGYKGS FHR+I FM
Sbjct: 6 VFFDIAVDGEPLG----RVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 154 IQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPW 213
Q SIYG F+DENF L H GPG++SMANAGPNTNGSQFFICT KT W
Sbjct: 62 CQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
LD +HVVFG+V EGM+IV+ +E + R + KK+ I+DCG+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 164
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 191 bits (485), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 116/164 (70%), Gaps = 6/164 (3%)
Query: 95 VYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFM 153
V+FD+++ G P+G R+ L+ D VP+TAENFRAL TGEKGFGYKGS FHR+I FM
Sbjct: 6 VFFDIAVDGEPLG----RVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 154 IQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPW 213
Q SIYG F+DENF L H GPG++SMANAGPNTNGSQFFICT KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
LD +HVVFG+V EGM+IV+ +E + R + KK+ I+DCG+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 164
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 191 bits (484), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 116/164 (70%), Gaps = 6/164 (3%)
Query: 95 VYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFM 153
V+FD+++ G P+G R+ L+ D VP+TAENFRAL TGEKGFGYKGS FHR+I FM
Sbjct: 6 VFFDIAVDGEPLG----RVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 154 IQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPW 213
Q SIYG F+DENF L H GPG++SMANAGPNTNGSQFFICT KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
LD +HVVFG+V EGM+IV+ +E + R + KK+ I+DCG+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 164
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 191 bits (484), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 116/164 (70%), Gaps = 6/164 (3%)
Query: 95 VYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFM 153
V+FD+++ G P+G R+ L+ D VP+TAENFRAL TGEKGFGYKGS FHR+I FM
Sbjct: 5 VFFDIAVDGEPLG----RVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
Query: 154 IQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPW 213
Q SIYG F+DENF L H GPG++SMANAGPNTNGSQFFICT KT W
Sbjct: 61 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 120
Query: 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
LD +HVVFG+V EGM+IV+ +E + R + KK+ I+DCG+L
Sbjct: 121 LDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 163
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 191 bits (484), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 116/164 (70%), Gaps = 6/164 (3%)
Query: 95 VYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFM 153
V+FD+++ G P+G R+ L+ D VP+TAENFRAL TGEKGFGYKGS FHR+I FM
Sbjct: 6 VFFDIAVDGEPLG----RVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 154 IQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPW 213
Q SIYG F+DENF L H GPG++SMANAGPNTNGSQFFICT KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
LD +HVVFG+V EGM+IV+ +E + R + KK+ I+DCG+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 164
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 190 bits (483), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 95/168 (56%), Positives = 117/168 (69%), Gaps = 6/168 (3%)
Query: 91 VTNKVYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVI 149
V V+FD+++ G P+G R+ L+ D VP+TAENFRAL TGEKGFGYKGS FHR+I
Sbjct: 10 VNPTVFFDIAVDGEPLG----RVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRII 65
Query: 150 KDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTV 209
FM Q SIYG F+DENF L H GPG++SMANAGPNTNGSQFFICT
Sbjct: 66 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 125
Query: 210 KTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
KT WLD +HVVFG+V EGM+IV+ +E + R + KK+ I+DCG+L
Sbjct: 126 KTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 172
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 190 bits (482), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 115/164 (70%), Gaps = 6/164 (3%)
Query: 95 VYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFM 153
V+FD+++ G P+G R+ L+ D VP+TAENFRAL TGEKGFGYKGS FHR+I FM
Sbjct: 5 VFFDIAVDGEPLG----RVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
Query: 154 IQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPW 213
Q SIYG F+DENF L H GPG++SMANAGPNTNGSQFFICT KT W
Sbjct: 61 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 120
Query: 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
LD +HVVFG V EGM+IV+ +E + R + KK+ I+DCG+L
Sbjct: 121 LDGKHVVFGAVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 163
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 190 bits (482), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 93/164 (56%), Positives = 116/164 (70%), Gaps = 6/164 (3%)
Query: 95 VYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFM 153
V+FD+++ G P+G R+ L+ D VP+TAENFRAL TGEKGFGYKGS FHR+I FM
Sbjct: 6 VFFDIAVDGEPLG----RVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 154 IQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPW 213
Q SIYG F+DENF L H GPG+++MANAGPNTNGSQFFICT KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTAKTEW 121
Query: 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
LD +HVVFG+V EGM+IV+ +E + R + KK+ I+DCG+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 164
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 189 bits (481), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 93/164 (56%), Positives = 116/164 (70%), Gaps = 6/164 (3%)
Query: 95 VYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFM 153
V+FD+++ G P+G R+ L+ D VP+TAENFRAL TGEKGFGYKGS FH++I FM
Sbjct: 6 VFFDIAVDGEPLG----RVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFM 61
Query: 154 IQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPW 213
Q SIYG F+DENF L H GPG++SMANAGPNTNGSQFFICT KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
LD +HVVFG+V EGM+IV+ +E + R + KK+ I+DCG+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 164
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/171 (55%), Positives = 116/171 (67%), Gaps = 6/171 (3%)
Query: 88 QSKVTNKVYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFH 146
V V+FD+++ G P+G R+ L+ D VP+TAENFRAL TGEKGFGYKGS FH
Sbjct: 3 HHHVNPTVFFDIAVDGEPLG----RVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFH 58
Query: 147 RVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFI 206
R+I FM Q SIYG F+DENF L H GPG++SMANAGPNTNGSQFFI
Sbjct: 59 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 118
Query: 207 CTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
CT KT WLD HVVFG+V EGM+IV+ +E + R + KK+ I+DCG+L
Sbjct: 119 CTAKTKWLDGXHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 168
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 115/164 (70%), Gaps = 6/164 (3%)
Query: 95 VYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFM 153
V+FD+++ G P+G R+ L+ D VP+TAENFRAL TGEKGFGYKGS FHR+I FM
Sbjct: 6 VFFDIAVDGEPLG----RVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 154 IQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPW 213
Q SIYG F+DENF L H GPG++SMANAGPNTNGSQFFICT KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
LD HVVFG+V EGM+IV+ +E + R + KK+ I+DCG+L
Sbjct: 122 LDGXHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 164
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 115/164 (70%), Gaps = 6/164 (3%)
Query: 95 VYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFM 153
V+FD+++ G P+G R+ L+ D VP+TAENFRAL TGEKGFGYKGS FHR+I FM
Sbjct: 6 VFFDIAVDGEPLG----RVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 154 IQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPW 213
Q SIYG F+DENF L H GPG++SMANAGPNTNGSQFFICT KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 121
Query: 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
LD HVVFG+V EGM+IV+ +E + R + KK+ I+DCG+L
Sbjct: 122 LDGXHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 164
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/163 (57%), Positives = 116/163 (71%), Gaps = 4/163 (2%)
Query: 94 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFM 153
+VY D+ IGN K AGRI + L D VP TAENFR LCT EKGFG+KGS+FHR+I FM
Sbjct: 13 QVYMDIKIGN---KPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFM 69
Query: 154 IQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPW 213
Q SIYG+ F DENF L H GPG++SMAN+GPNTNGSQFF+ KT W
Sbjct: 70 CQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDW 129
Query: 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGE 256
LD +HVVFG+V EG+D+++ IE+Q + G +P +KV+I+DCGE
Sbjct: 130 LDGKHVVFGEVTEGLDVLRQIEAQGSKDG-KPKQKVIIADCGE 171
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/164 (56%), Positives = 116/164 (70%), Gaps = 6/164 (3%)
Query: 95 VYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFM 153
V+FD+++ G P+G R+ L+ D VP+TAENFRAL TGEKGFGYKGS FHR+I FM
Sbjct: 5 VFFDIAVDGEPLG----RVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
Query: 154 IQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPW 213
Q SIYG F+DENF L H GPG++SMANAGPNTNGSQFFICT KT W
Sbjct: 61 CQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 120
Query: 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
LD +HVVFG+V EGM+IV+ ++ + R + KK+ I+DCG+L
Sbjct: 121 LDGKHVVFGKVKEGMNIVEAMK-RFGSRNGKTSKKITIADCGQL 163
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/163 (57%), Positives = 116/163 (71%), Gaps = 4/163 (2%)
Query: 94 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFM 153
+VY D+ IGN K AGRI + L D VP TAENFR LCT EKGFG+KGS+FHR+I FM
Sbjct: 5 QVYMDIKIGN---KPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFM 61
Query: 154 IQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPW 213
Q SIYG+ F DENF L H GPG++SMAN+GPNTNGSQFF+ KT W
Sbjct: 62 CQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDW 121
Query: 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGE 256
LD +HVVFG+V EG+D+++ IE+Q + G +P +KV+I+DCGE
Sbjct: 122 LDGKHVVFGEVTEGLDVLRQIEAQGSKDG-KPKQKVIIADCGE 163
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/179 (54%), Positives = 121/179 (67%), Gaps = 14/179 (7%)
Query: 94 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTFH 146
KV+FD+SI N K AGRIV+ LY D VP+TAENFRALCTGEKG G YK S FH
Sbjct: 9 KVFFDISIDN---KAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFH 65
Query: 147 RVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLS---HIGPGVVSMANAGPNTNGSQ 203
RVI +FMIQ SIYG TF+DE+F H G G +SMANAGPNTNGSQ
Sbjct: 66 RVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQ 125
Query: 204 FFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGELPMSEA 262
FFICT TPWLD +HVVFG+V++G+D+VK +E + G + ++V+SDCGE+ ++
Sbjct: 126 FFICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSG-KTRSRIVVSDCGEVAADKS 183
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/170 (58%), Positives = 113/170 (66%), Gaps = 4/170 (2%)
Query: 88 QSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHR 147
+ +VT KVYFDV I + + GRI IGL+G D P T ENFR LCTGE GFGYK S FHR
Sbjct: 7 EPEVTAKVYFDVMIDS---EPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHR 63
Query: 148 VIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFIC 207
VI++FMIQ SIYG F DEN + H G +SMANAGPNTNGSQFFI
Sbjct: 64 VIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFIT 122
Query: 208 TVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
T TPWLD RHVVFG+VL+GMD+V IE +T+ DRP K V I GEL
Sbjct: 123 TAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/170 (57%), Positives = 112/170 (65%), Gaps = 4/170 (2%)
Query: 88 QSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHR 147
+ +VT KVYFDV I + + GRI IGL+G D P T ENFR LCTGE GFGYK S FHR
Sbjct: 7 EPEVTAKVYFDVMIDS---EPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHR 63
Query: 148 VIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFIC 207
VI++FMIQ SIYG F DEN + H G +SMANAGPNTNGSQFFI
Sbjct: 64 VIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFIT 122
Query: 208 TVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
T TPWLD HVVFG+VL+GMD+V IE +T+ DRP K V I GEL
Sbjct: 123 TAPTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 183 bits (465), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 96/166 (57%), Positives = 114/166 (68%), Gaps = 6/166 (3%)
Query: 93 NKVYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKD 151
++VYFDV G P+G R+V LY D VP+TAENFRALCTGEKGFGY GS FHRVI D
Sbjct: 2 SQVYFDVEADGQPIG----RVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPD 57
Query: 152 FMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKT 211
FM+Q SIYG F DENFK H PG++SMANAGPNTNGSQFFI TV
Sbjct: 58 FMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPC 117
Query: 212 PWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
PWLD +HVVFG+V++G DIVK +ES + G ++V++ GEL
Sbjct: 118 PWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATK-ARIVVAKSGEL 162
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 183 bits (465), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 116/170 (68%), Gaps = 4/170 (2%)
Query: 88 QSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHR 147
Q + +V+FD+ IGN AGRIV+ L D VP+TAENFRALCTGE+GFGY FHR
Sbjct: 6 QKRNLPRVFFDIRIGNGD---AGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHR 62
Query: 148 VIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFIC 207
VI FM Q SIYGR F DENF+L H G GV+SMAN+GPNTNGSQFFIC
Sbjct: 63 VIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFIC 122
Query: 208 TVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
T K WLD +HVVFG+V++G ++VK +ES + G + + V+IS CGEL
Sbjct: 123 TTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSG-KVKEPVIISRCGEL 171
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/182 (53%), Positives = 122/182 (67%), Gaps = 16/182 (8%)
Query: 88 QSKVTN----KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG---- 139
Q+K +N +V+FDV IG G+ GRIV+ L+ D VP+TAENFRALCTGEKG G
Sbjct: 7 QAKPSNPSNPRVFFDVDIG---GERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTG 63
Query: 140 ----YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANA 195
+KG FHR+IK FMIQ SIYG F+DENF H G++SMANA
Sbjct: 64 KPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANA 123
Query: 196 GPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCG 255
G NTNGSQFFI TV TP LD +HVVFGQV++GM + K++E+ E +G++P K VI++CG
Sbjct: 124 GSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECG 182
Query: 256 EL 257
EL
Sbjct: 183 EL 184
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/163 (55%), Positives = 113/163 (69%), Gaps = 4/163 (2%)
Query: 94 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFM 153
+VY D+ IGN K AGRI L D VP TAENFR LCT EKGFG+KGS+FHR+I F
Sbjct: 14 QVYXDIKIGN---KPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIPQFX 70
Query: 154 IQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPW 213
Q SIYG+ F DENF L H GPG++S AN+GPNTNGSQFF+ KT W
Sbjct: 71 CQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLTCDKTDW 130
Query: 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGE 256
LD +HVVFG+V EG+D+++ IE+Q + G +P +KV+I+DCGE
Sbjct: 131 LDGKHVVFGEVTEGLDVLRQIEAQGSKDG-KPKQKVIIADCGE 172
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/164 (55%), Positives = 112/164 (68%), Gaps = 6/164 (3%)
Query: 95 VYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFM 153
V+FD+++ G P+G R+ L+ D VP+TAENFRAL TGEKGFGYKGS FHR+I F
Sbjct: 5 VFFDIAVDGEPLG----RVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFX 60
Query: 154 IQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPW 213
Q SIYG F+DENF L H GPG++S ANAGPNTNGSQFFICT KT W
Sbjct: 61 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTAKTEW 120
Query: 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
LD +HVVFG+V EG +IV+ E + R + KK+ I+DCG+L
Sbjct: 121 LDGKHVVFGKVKEGXNIVEAXE-RFGSRNGKTSKKITIADCGQL 163
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 177 bits (450), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 90/164 (54%), Positives = 114/164 (69%), Gaps = 6/164 (3%)
Query: 93 NKVYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKD 151
+ V+FD++ G P+G I L+ D VP+TA NFRALCTGEKGFGY GS FHRVI D
Sbjct: 2 SNVFFDITKNGAPLG----TIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPD 57
Query: 152 FMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKT 211
FM+Q SIYG F DENF+L H PG++SMANAGPNTNGSQFFI TV T
Sbjct: 58 FMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVT 117
Query: 212 PWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCG 255
WLD +HVVFG+V++GM++VK IE++ + G +P ++ I+ CG
Sbjct: 118 SWLDGKHVVFGEVIDGMNVVKAIEAEGSGSG-KPRSRIEIAKCG 160
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 174 bits (441), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 94/168 (55%), Positives = 109/168 (64%), Gaps = 11/168 (6%)
Query: 95 VYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTFHR 147
VYFD+SIG AGRI + L+ D VP TAENFRALCTGEKG G Y GS FHR
Sbjct: 22 VYFDISIGQ---TPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHR 78
Query: 148 VIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFIC 207
+I FMIQ SIYG F+DENF +H P ++SMANAGPNTNGSQFFI
Sbjct: 79 IIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFIT 138
Query: 208 TVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCG 255
TV PWLD +HVVFG+VLEGM++VK IE + G +P K V I+ G
Sbjct: 139 TVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNG-KPTKSVCITASG 185
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 109/170 (64%), Gaps = 10/170 (5%)
Query: 94 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEK------GFGYKGSTFHR 147
KV+FD+SI N AGRI+ L+ D P+T ENFRALCTGEK YK S FHR
Sbjct: 5 KVFFDISIDNSN---AGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHR 61
Query: 148 VIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFIC 207
+I FM Q SIYGR+F DENF + H PG++SMANAGPNTN SQFFI
Sbjct: 62 IIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFIT 121
Query: 208 TVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
V PWLD +HVVFG+V+EGM++V+ +E + G + VVI+DCGEL
Sbjct: 122 LVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSG-YVKRSVVITDCGEL 170
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 171 bits (433), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/163 (52%), Positives = 110/163 (67%), Gaps = 4/163 (2%)
Query: 95 VYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMI 154
V+F++SI + K GRIV LY + VP+TA+NFR L TG+ GFGYK S FHRVI FM+
Sbjct: 5 VFFNISIND---KPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFML 61
Query: 155 QXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWL 214
Q SIYG F DENF++ H PG++SMANAG NTNGSQFFI TV T WL
Sbjct: 62 QGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWL 121
Query: 215 DQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
D +HVVFG+V+EG+DIV+ +E + + G + + I+DCG +
Sbjct: 122 DGKHVVFGEVIEGLDIVRKVEGKGSASG-KTNATIKITDCGTV 163
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 171 bits (433), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/163 (52%), Positives = 110/163 (67%), Gaps = 4/163 (2%)
Query: 95 VYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMI 154
V+F++SI + K GRIV LY + VP+TA+NFR L TG+ GFGYK S FHRVI FM+
Sbjct: 6 VFFNISIND---KPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFML 62
Query: 155 QXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWL 214
Q SIYG F DENF++ H PG++SMANAG NTNGSQFFI TV T WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWL 122
Query: 215 DQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
D +HVVFG+V+EG+DIV+ +E + + G + + I+DCG +
Sbjct: 123 DGKHVVFGEVIEGLDIVRKVEGKGSASG-KTNATIKITDCGTV 164
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 170 bits (431), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 113/174 (64%), Gaps = 8/174 (4%)
Query: 89 SKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGE-----KGFGYKGS 143
S V V+FDVSIG G+ GR+ I L+ D VP+TAENFR CTGE GYKGS
Sbjct: 7 SPVNPVVFFDVSIG---GQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGS 63
Query: 144 TFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQ 203
TFHRVIKDFMIQ SIY F DENFKL H PG++SMAN+GP+TNG Q
Sbjct: 64 TFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQ 123
Query: 204 FFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
FFI K WLD +HVVFG++++G+ +++ IE+ T ++P VVIS CGE+
Sbjct: 124 FFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 168 bits (425), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 107/170 (62%), Gaps = 10/170 (5%)
Query: 94 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEK------GFGYKGSTFHR 147
KV+FD+SI N AGRI+ L+ D P+T ENFRALCTGEK YK S FHR
Sbjct: 5 KVFFDISIDNSN---AGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHR 61
Query: 148 VIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFIC 207
+I FM Q SIYGR+F DENF + H PG++SMANAGPNTN SQF I
Sbjct: 62 IIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLIT 121
Query: 208 TVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
V PWLD +HVVFG+V+EGM++V+ +E + G + VVI+DCGE
Sbjct: 122 LVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSG-YVKRSVVITDCGEW 170
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/172 (48%), Positives = 107/172 (62%), Gaps = 4/172 (2%)
Query: 87 LQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFH 146
+ + + VYFDV + GRIV+ L D VP+TA+NFR LC KG GYKGSTFH
Sbjct: 22 MAKEASGNVYFDVYANE---ESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFH 78
Query: 147 RVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFI 206
R+I FM+Q SIYG F DENF+L H G++SMAN G +TNGSQFFI
Sbjct: 79 RIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFI 138
Query: 207 CTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGD-RPGKKVVISDCGEL 257
KT WLD++HVVFG+V+EGMD+V I ++ G + G ++ I DCG L
Sbjct: 139 TLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVL 190
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 160 bits (406), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 90/179 (50%), Positives = 107/179 (59%), Gaps = 11/179 (6%)
Query: 87 LQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG------- 139
+ K +V+ DV+I G LAGRIV+ LY D P+T NF LCTG G G
Sbjct: 1 MSKKDRRRVFLDVTID---GNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPL 57
Query: 140 -YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPN 198
YKGSTFHRVIK+FMIQ SIYG F DE F + H P VVSMAN GPN
Sbjct: 58 HYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPN 117
Query: 199 TNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
TNGSQFFI T P L+ HVVFG+V+ G ++V IE +T+ +RP VVI +CGEL
Sbjct: 118 TNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 107/172 (62%), Gaps = 11/172 (6%)
Query: 94 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG--------YKGSTF 145
+ +FD++I N + AGR+V L+ D P+T ENFR LCTGEKG G YK F
Sbjct: 28 RCFFDIAINN---QPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLF 84
Query: 146 HRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFF 205
HRV+KDFM+Q SIYG F+DE+F + H ++SMAN G +TNGSQFF
Sbjct: 85 HRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFF 144
Query: 206 ICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
I T TP LD HVVFGQV+ G ++V+ IE+Q+TD +P +V I CGEL
Sbjct: 145 ITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 107/172 (62%), Gaps = 11/172 (6%)
Query: 94 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG--------YKGSTF 145
+ +FD++I N + AGR+V L+ D P+T ENFR LCTGEKG G YK F
Sbjct: 11 RCFFDIAINN---QPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLF 67
Query: 146 HRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFF 205
HRV+KDFM+Q SIYG F+DE+F + H ++SMAN G +TNGSQFF
Sbjct: 68 HRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFF 127
Query: 206 ICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
I T TP LD HVVFGQV+ G ++V+ IE+Q+TD +P +V I CGEL
Sbjct: 128 ITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 107/172 (62%), Gaps = 11/172 (6%)
Query: 94 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG--------YKGSTF 145
+ +FD++I N + AGR+V L+ D P+T ENFR LCTGEKG G YK F
Sbjct: 11 RCFFDIAINN---QPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLF 67
Query: 146 HRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFF 205
HRV+KDFM+Q SIYG F+DE+F + H ++SMAN G +TNGSQFF
Sbjct: 68 HRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFF 127
Query: 206 ICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
I T TP LD HVVFGQV+ G ++V+ IE+Q+TD +P +V I CGEL
Sbjct: 128 ITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/164 (51%), Positives = 107/164 (65%), Gaps = 6/164 (3%)
Query: 95 VYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFM 153
V+FDV G P+G RI + L+ + VP+TAENFRALCTGEKGFG+K S FHRVI DF+
Sbjct: 9 VFFDVCADGEPLG----RITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFV 64
Query: 154 IQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPW 213
Q SIYG F+DENF + H GPG++SMAN G NTN SQF I K
Sbjct: 65 CQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEH 124
Query: 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
LD +HVVFG V +GMD VK IES + +G +++ I++CG++
Sbjct: 125 LDFKHVVFGFVKDGMDTVKKIESFGSPKGSVC-RRITITECGQI 167
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 150 bits (379), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 103/171 (60%), Gaps = 7/171 (4%)
Query: 93 NKVYFDVSIGNPVGKL---AGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVI 149
++V+FDV PVG GRIV L+ DVP+TA+NFR LC G GY+ STFHR+I
Sbjct: 3 SQVFFDVEYA-PVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRII 61
Query: 150 KDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTV 209
+FMIQ SIYG F DENF H G++SMANAGPNTNGSQFFI T
Sbjct: 62 PNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTA 121
Query: 210 KTPWLDQRHVVFGQVLE--GMDIVKLIESQETDRGD-RPGKKVVISDCGEL 257
T WLD +HVVFG+V + +VK IE+ + G R + I +CGEL
Sbjct: 122 VTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 147 bits (370), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 103/173 (59%), Gaps = 13/173 (7%)
Query: 94 KVYFDVSIG-NPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG--------YKGST 144
+ +FD+ I PVG RI+ L+ D P+T +NF LC+GEKG G YKGST
Sbjct: 21 QCHFDIEINREPVG----RIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGST 76
Query: 145 FHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQF 204
FHRV+K+FMIQ SIYG FKDENF L H ++SMAN G +TNGSQF
Sbjct: 77 FHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQF 136
Query: 205 FICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257
FI T P LD HVVFG V+ G ++++ IE+ +TD RP V + DCG L
Sbjct: 137 FITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVL 189
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 102/171 (59%), Gaps = 11/171 (6%)
Query: 95 VYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGF-----GYKGSTFHRVI 149
V+ D+++GN G+ L+ + VP+T+ENFR CTGE GYK + FHRVI
Sbjct: 62 VFMDINLGN---NFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVI 118
Query: 150 KDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTV 209
K+FMIQ SIYG F DENF + H G++SMAN+GPNTNG QFFI T
Sbjct: 119 KEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTK 178
Query: 210 KTPWLDQRHVVFGQVLEG--MDIVKLIESQE-TDRGDRPGKKVVISDCGEL 257
K WLD ++VVFG++++ + ++K IE+ T +P + + +CGEL
Sbjct: 179 KCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 91/158 (57%), Gaps = 13/158 (8%)
Query: 95 VYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMI 154
VY + S+G IV+ LY P+T +NF L +G+ Y G+ FHR+IKDFMI
Sbjct: 14 VYLETSMG--------IIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMI 62
Query: 155 QXXXXXXXXXXXXXSIYGRTFKDE-NFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPW 213
Q SIYG+ F+DE + L G G+++MANAGP+TNGSQFF+ T W
Sbjct: 63 QGGDPTGTGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQW 121
Query: 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVI 251
LD +H +FG+V +G+ +V + ET+ DRP V I
Sbjct: 122 LDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 91/158 (57%), Gaps = 13/158 (8%)
Query: 95 VYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMI 154
VY + S+G IV+ LY P+T +NF L +G+ Y G+ FHR+IKDFMI
Sbjct: 14 VYLETSMG--------IIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMI 62
Query: 155 QXXXXXXXXXXXXXSIYGRTFKDE-NFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPW 213
Q SIYG+ F+DE + L G G+++MANAGP+TNGSQFF+ T W
Sbjct: 63 QGGDPTGTGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQW 121
Query: 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVI 251
LD +H +FG+V +G+ +V + ET+ DRP V I
Sbjct: 122 LDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 86/143 (60%), Gaps = 5/143 (3%)
Query: 110 GRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXS 169
G IV+ LY P+T +NF L +G+ Y G+ FHR+IKDFMIQ S
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGA-S 76
Query: 170 IYGRTFKDE-NFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGM 228
IYG+ F+DE + L G G+++MANAGP+TNGSQFF+ T WLD +H +FG+V +G+
Sbjct: 77 IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136
Query: 229 DIVKLIESQETDRGDRPGKKVVI 251
+V + ET+ DRP V I
Sbjct: 137 GMVNRVGMVETNSQDRPVDDVKI 159
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 85/144 (59%), Gaps = 6/144 (4%)
Query: 110 GRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXS 169
G I L+ + P+T ENF C + Y G TFHR+IK FMIQ S
Sbjct: 31 GDIHTKLFPVECPKTVENF---CVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGE-S 86
Query: 170 IYGRTFKDE-NFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGM 228
I+G F+DE + L H P +SMANAG NTNGSQFFI V TPWLD +H VFG+V +GM
Sbjct: 87 IWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGM 146
Query: 229 DIVKLIESQETD-RGDRPGKKVVI 251
++V+ I + + + + D+P + V I
Sbjct: 147 EVVQRISNVKVNPKTDKPYEDVSI 170
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 110 GRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXS 169
G I I L+ + +T +NF G+ Y FHRVIK FM+Q S
Sbjct: 15 GDIHISLFYKECKKTVQNFSVHSIN--GY-YNNCIFHRVIKHFMVQTGDPSGDGTGGE-S 70
Query: 170 IYGRTFKDENF-KLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGM 228
I+G F+DE F L+H P +VSMAN GPNTNGSQFFI TV PWLD +H VFG+V +G
Sbjct: 71 IWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGS 130
Query: 229 DIVKLIESQETDRGDRPGKKVVI 251
IV IE TD+ D+P + + I
Sbjct: 131 KIVLDIEKVRTDKRDKPLEDIKI 153
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 90/145 (62%), Gaps = 8/145 (5%)
Query: 110 GRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXS 169
G + + L+ D P+T ENF LC K Y G+ FHR I++F+IQ S
Sbjct: 29 GDLNLELHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGE-S 84
Query: 170 IYGRTFKDENFK--LSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEG 227
+G+ FKDE F+ LSH G G++SMAN+GPN+N SQFFI +LD++H +FG+V+ G
Sbjct: 85 YWGKPFKDE-FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGG 143
Query: 228 MDIVKLIESQETD-RGDRPGKKVVI 251
D++ +E+ E+D + DRP +++ I
Sbjct: 144 FDVLTAMENVESDPKTDRPKEEIRI 168
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 78/156 (50%), Gaps = 17/156 (10%)
Query: 110 GRIVIGLYGDDVPQTAENFRALCTGEKGFG------------YKGSTFHRVIKDFMIQXX 157
G I I L+G+ P+T NF L G K + Y G+ FHRVI+ FMIQ
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 158 XXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQR 217
+ F E L P +++MANAGP TNGSQFFI KTP L++R
Sbjct: 93 DPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 149
Query: 218 HVVFGQVL--EGMDIVKLIESQETDRGDRPGKKVVI 251
H +FG+V+ E +V+ I TD DRP VVI
Sbjct: 150 HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 109 AGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXX 168
G I I ++ + P+T ENF ALC Y G FHR IK FM+Q
Sbjct: 9 VGDIKIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFMVQTGDPTGTGRGGN- 64
Query: 169 SIYGRTFKDENFK-LSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEG 227
SI+G+ F+DE + L H GVVSMAN GPNTNGSQFFI K P LD ++ VFG+V++G
Sbjct: 65 SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDG 124
Query: 228 MDIVKLIESQE-TDRGDRPGKKVVISD 253
++ + +E ++ RP V I D
Sbjct: 125 LETLDELEKLPVNEKTYRPLNDVHIKD 151
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 109 AGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXX 168
G I I ++ + P+T ENF ALC Y G FHR IK FM+Q
Sbjct: 15 VGDIKIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFMVQTGDPTGTGRGGN- 70
Query: 169 SIYGRTFKDENFK-LSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEG 227
SI+G+ F+DE + L H GVVSMAN GPNTNGSQFFI K P LD ++ VFG+V++G
Sbjct: 71 SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDG 130
Query: 228 MDIVKLIESQE-TDRGDRPGKKVVISD 253
++ + +E ++ RP V I D
Sbjct: 131 LETLDELEKLPVNEKTYRPLNDVHIKD 157
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 76/137 (55%), Gaps = 5/137 (3%)
Query: 110 GRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXS 169
G + LY P+T NF LC E GF Y + FHRVI +F+IQ S
Sbjct: 48 GDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTGTGKGGK-S 103
Query: 170 IYGRTFKDE-NFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGM 228
IYG F+DE N +L H G G++SM+N GPNTN SQFFI P LD +H +F +V + M
Sbjct: 104 IYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNM 163
Query: 229 DIVKLIESQETDRGDRP 245
++ I S +T ++P
Sbjct: 164 TCIENIASVQTTATNKP 180
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 83/149 (55%), Gaps = 9/149 (6%)
Query: 110 GRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXS 169
G + L+ P+ +NF AL G+ YK + FH+ IK F+IQ S
Sbjct: 26 GDLKFELFCSQCPKACKNFLALSA--SGY-YKNTIFHKNIKGFIIQGGDPTGTGKGGE-S 81
Query: 170 IYGRTFKDENF-KLSHIGPGVVSMANAG----PNTNGSQFFICTVKTPWLDQRHVVFGQV 224
IYGR F DE + +L + G++SMA+ G PNTNGSQFFI P L+ +V+FG++
Sbjct: 82 IYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKL 141
Query: 225 LEGMDIVKLIESQETDRGDRPGKKVVISD 253
++G + + +E+ +D+ +P +++I D
Sbjct: 142 IDGFETLNTLENCPSDKSHKPIDEIIIKD 170
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 72/149 (48%), Gaps = 8/149 (5%)
Query: 109 AGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXX 168
AG I I L+ + P+ NF LC Y + FHRV+ F++Q
Sbjct: 33 AGDIDIELWSKEAPKACRNFIQLCLEAY---YDNTIFHRVVPGFIVQGGDPTGTGSGGE- 88
Query: 169 SIYGRTFKDE-NFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEG 227
SIYG FKDE + +L G+V+MANAG + NGSQFF + L+ +H +FG+V G
Sbjct: 89 SIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-G 147
Query: 228 MDIVKLIESQETDRGD--RPGKKVVISDC 254
+ ++ E D D RP I C
Sbjct: 148 DTVYNMLRLSEVDIDDDERPHNPHKIKSC 176
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 15/142 (10%)
Query: 110 GRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXS 169
G + I L+ D P+ ++F LC + + + FHR I++FMIQ
Sbjct: 16 GSLNIELHADMAPRACDSFLRLCAVKY---FDDTIFHRCIRNFMIQGGRAELRQPSKKKE 72
Query: 170 IY-----------GRTFKDE-NFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQR 217
+ G F+DE + +L H G GV+SMAN G ++N S+FFI L+ +
Sbjct: 73 VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNK 132
Query: 218 HVVFGQVLEGMDIVKLIESQET 239
H +FG+V+ G+D+++ E ET
Sbjct: 133 HTIFGRVVGGLDVLRQWEKLET 154
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 65/154 (42%), Gaps = 17/154 (11%)
Query: 110 GRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXS 169
G I + L+ D P+TA NF K Y G+ FHRVI FMIQ S
Sbjct: 9 GTITLKLFADKAPETAANFEQYV---KDGHYDGTIFHRVIDGFMIQ--GGGFEPGMKQKS 63
Query: 170 IYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQR--------HVVF 221
+ N LS+ + P++ +QFFI +LD + VF
Sbjct: 64 TRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFLDHTAPTAHGWGYAVF 123
Query: 222 GQVLEGMDIVKLIESQET----DRGDRPGKKVVI 251
G+V+EG D+V I+S T GD P V+I
Sbjct: 124 GEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVII 157
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 69/156 (44%), Gaps = 19/156 (12%)
Query: 110 GRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXS 169
G IVI + D P+T +NF C +GF Y + FHRVI FMIQ
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMKQKATK 65
Query: 170 IYGRTFKDENFKLSHIGPGVVSMANA-GPNTNGSQFFICTVKTPWLD--------QRHVV 220
K+E G ++MA P++ +QFFI V +L+ + V
Sbjct: 66 ---EPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCV 122
Query: 221 FGQVLEGMDIVKLIESQETDRG----DRPGKKVVIS 252
F +V++GMD+V I+ T R D P + V+I
Sbjct: 123 FAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIE 158
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 68/156 (43%), Gaps = 19/156 (12%)
Query: 110 GRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXS 169
G IVI + D P+T +NF C +GF Y + FHRVI FMIQ
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMKQKATK 65
Query: 170 IYGRTFKDENFKLSHIGPGVVSMANA-GPNTNGSQFFICTVKTPWLD--------QRHVV 220
K+E G ++MA P++ +QFFI V +L+ + V
Sbjct: 66 ---EPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCV 122
Query: 221 FGQVLEGMDIVKLIESQETDRG----DRPGKKVVIS 252
F +V++GMD V I+ T R D P + V+I
Sbjct: 123 FAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIE 158
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 109 AGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXX 168
AG I + L P + +NF GF Y +TFHRVI FMIQ
Sbjct: 13 AGNIELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQQKKP 69
Query: 169 SIYGRTFKDENFKLSHIGPGVVSMA-NAGPNTNGSQFFICTVKTPWLD--QR---HVVFG 222
+ + D + + G ++MA A ++ SQFFI +LD QR + VFG
Sbjct: 70 NPPIKNEADNGLRNTR---GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFG 126
Query: 223 QVLEGMDIVKLIESQET-DRG---DRPGKKVVISDCGELP 258
+V++GMD+ I T D G + P K VVI LP
Sbjct: 127 KVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 30/177 (16%)
Query: 87 LQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFH 146
Q KV S+G+ + + L+ + P NF LC +G+ Y + FH
Sbjct: 16 FQGSTRGKVVLHTSLGD--------LDVELWARECPLACRNFVQLCL--EGY-YVNTIFH 64
Query: 147 RVIKDFMIQXXXXXXXXXXXXXSIY-GRTFKDENF-KLSHIGPGVVSMANAGPN------ 198
RV+KDF++Q + + G+ F E +L G+V +AN G +
Sbjct: 65 RVVKDFIVQGGDPTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAEN 124
Query: 199 --------TNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRG--DRP 245
TNG+QFFI + L+ + +FG+V G + L++ + + G DRP
Sbjct: 125 DERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHTLYNLMKFNDLEVGKEDRP 180
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 109 AGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXX 168
AG I + L P + +NF GF Y +TFHRVI FMIQ
Sbjct: 13 AGNIELELDKQKAPVSVQNFVDYVN--SGF-YNNTTFHRVIPGFMIQGGGFTEQMQQKKP 69
Query: 169 SIYGRTFKDENFKLSHIGPGVVSMA-NAGPNTNGSQFFICTVKTPWLD--QR---HVVFG 222
+ + D + + G ++MA A ++ SQFFI +LD QR + VFG
Sbjct: 70 NPPIKNEADNGLRNTR---GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFG 126
Query: 223 QVLEGMDIVKLIESQET-DRG---DRPGKKVVISDCGELP 258
+V++GMD+ I T D G + P K VVI LP
Sbjct: 127 KVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 166
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 68/161 (42%), Gaps = 29/161 (18%)
Query: 110 GRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQX-----XXXXXXXX 164
G I + L P+T ENF L +KG Y G+ FHRVI FMIQ
Sbjct: 13 GVIKLELDEAKAPKTVENF--LNYVKKGH-YDGTIFHRVINGFMIQGGGFEPGLKQKPTD 69
Query: 165 XXXXSIYGRTFKDENFKLSHIGPGVVSMANAG-PNTNGSQFFICTVKTPWLDQR------ 217
+ K++ + ++MA P++ +QFFI +L+
Sbjct: 70 APIANEANNGLKNDTY--------TIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQG 121
Query: 218 --HVVFGQVLEGMDIVKLIESQETD----RGDRPGKKVVIS 252
+ VFG+V+EG DIV I++ +T D P VVI
Sbjct: 122 WGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIE 162
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 74/197 (37%), Gaps = 43/197 (21%)
Query: 94 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGE------KGFG-------- 139
+VY D+ + N ++ GR+ I L+ D P ENF L G+ G G
Sbjct: 16 RVYMDIVLNN---EIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHI 72
Query: 140 ---YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGR-----TFKDENFKLSHIGPGVVS 191
Y+G FH V+ + I ++Y F D + H G++S
Sbjct: 73 NRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD--YFYPHESKGLLS 130
Query: 192 MANAGPNTN--GSQFFICTVKTPW-----------LDQRHVVFGQVLEGMDIVKLIESQE 238
+ P T+ G++++ T LD+ VV GQV G+D++ I S
Sbjct: 131 LV---PYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMI 187
Query: 239 TDRGDRPGKKVVISDCG 255
R I CG
Sbjct: 188 KPYAGRKYPTFSIGKCG 204
>pdb|2F7T|A Chain A, Crystal Structure Of The Catalytic Domain Of Mos1 Mariner
Transposase
Length = 227
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 181 KLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQE 238
K S++ PG + + A PN G + +C W DQ V++ ++L+ + V Q+
Sbjct: 50 KKSYVDPGQPATSTARPNRFGKKTMLCV----WWDQSGVIYYELLKPGETVNAARYQQ 103
>pdb|3HOS|A Chain A, Crystal Structure Of The Mariner Mos1 Paired End Complex
With Mg
pdb|3HOS|B Chain B, Crystal Structure Of The Mariner Mos1 Paired End Complex
With Mg
pdb|3HOT|A Chain A, Crystal Structure Of The Mos1 Mariner Paired End Complex
With Mn
pdb|3HOT|B Chain B, Crystal Structure Of The Mos1 Mariner Paired End Complex
With Mn
Length = 345
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 181 KLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQE 238
K S++ PG + + A PN G + +C W DQ V++ ++L+ + V Q+
Sbjct: 168 KKSYVDPGQPATSTARPNRFGKKTMLCV----WWDQSGVIYYELLKPGETVNAARYQQ 221
>pdb|2RJP|A Chain A, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|2RJP|B Chain B, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|2RJP|C Chain C, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|2RJP|D Chain D, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|3B2Z|A Chain A, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|B Chain B, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|C Chain C, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|D Chain D, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|E Chain E, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|F Chain F, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|G Chain G, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|H Chain H, Crystal Structure Of Adamts4 (Apo Form)
Length = 316
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 94 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQ----TAENFRALCTGEKGF 138
K + SI NPV + R+VI G++ PQ A+ R+ C ++G
Sbjct: 39 KAFKHPSIRNPVSLVVTRLVILGSGEEGPQVGPSAAQTLRSFCAWQRGL 87
>pdb|2V5I|A Chain A, Structure Of The Receptor-binding Protein Of Bacteriophage
Det7: A Podoviral Tailspike In A Myovirus
Length = 559
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 179 NFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQE 238
N K IG G + N GP + +Q F+ + TPW+ G+ + +V Q
Sbjct: 64 NCKAKFIGDGALIFNNMGPGSVINQPFMESKTTPWVIFPWDADGKWITDAALVAATLKQS 123
Query: 239 TDRGDRPGKKVVISDCGELPMSEA 262
G +PG ++D + P EA
Sbjct: 124 KIEGYQPG----VNDWVKFPGLEA 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,797,993
Number of Sequences: 62578
Number of extensions: 253697
Number of successful extensions: 709
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 547
Number of HSP's gapped (non-prelim): 83
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)