Query 024818
Match_columns 262
No_of_seqs 214 out of 1447
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 07:38:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0880 Peptidyl-prolyl cis-tr 100.0 2.5E-54 5.4E-59 368.3 16.8 176 83-261 30-206 (217)
2 KOG0546 HSP90 co-chaperone CPR 100.0 6.4E-53 1.4E-57 387.6 15.0 167 91-260 7-181 (372)
3 cd01926 cyclophilin_ABH_like c 100.0 6.8E-46 1.5E-50 314.1 19.4 159 93-255 1-164 (164)
4 KOG0879 U-snRNP-associated cyc 100.0 8.8E-47 1.9E-51 305.3 12.4 168 87-257 5-177 (177)
5 PTZ00060 cyclophilin; Provisio 100.0 5.5E-45 1.2E-49 313.9 20.0 162 92-258 15-183 (183)
6 PLN03149 peptidyl-prolyl isome 100.0 5E-45 1.1E-49 314.9 19.1 163 92-257 18-186 (186)
7 PTZ00221 cyclophilin; Provisio 100.0 7.6E-45 1.6E-49 325.1 20.3 166 88-260 48-222 (249)
8 cd01923 cyclophilin_RING cyclo 100.0 4.9E-43 1.1E-47 295.4 18.5 150 107-260 6-156 (159)
9 KOG0881 Cyclophilin type pepti 100.0 2.8E-44 6.1E-49 287.7 8.7 153 93-257 10-163 (164)
10 cd01927 cyclophilin_WD40 cyclo 100.0 9.2E-43 2E-47 290.6 17.0 143 107-253 4-147 (148)
11 cd01928 Cyclophilin_PPIL3_like 100.0 1.2E-42 2.6E-47 291.4 17.5 145 107-255 7-152 (153)
12 COG0652 PpiB Peptidyl-prolyl c 100.0 1.2E-42 2.7E-47 291.7 15.9 145 107-257 6-157 (158)
13 KOG0111 Cyclophilin-type pepti 100.0 2.2E-43 4.7E-48 306.0 10.2 165 90-258 134-298 (298)
14 cd01921 cyclophilin_RRM cyclop 100.0 4.8E-42 1.1E-46 291.2 17.7 150 107-260 4-162 (166)
15 cd01922 cyclophilin_SpCYP2_lik 100.0 4.4E-42 9.4E-47 286.0 16.4 142 107-253 4-146 (146)
16 cd01925 cyclophilin_CeCYP16-li 100.0 2.5E-40 5.4E-45 282.1 18.9 159 89-259 2-162 (171)
17 PRK10903 peptidyl-prolyl cis-t 100.0 6.1E-40 1.3E-44 284.1 18.8 155 90-258 26-190 (190)
18 KOG0883 Cyclophilin type, U bo 100.0 7.1E-41 1.5E-45 309.2 12.3 160 89-258 272-432 (518)
19 PRK10791 peptidyl-prolyl cis-t 100.0 1.7E-38 3.7E-43 269.2 16.9 144 107-257 6-163 (164)
20 KOG0882 Cyclophilin-related pe 100.0 1.7E-39 3.6E-44 304.8 11.3 145 108-256 412-557 (558)
21 cd01920 cyclophilin_EcCYP_like 100.0 2.6E-38 5.6E-43 265.7 16.2 142 107-254 4-155 (155)
22 KOG0884 Similar to cyclophilin 100.0 2E-38 4.2E-43 252.9 11.3 146 107-256 7-154 (161)
23 cd00317 cyclophilin cyclophili 100.0 3.3E-37 7.2E-42 254.7 16.7 142 107-253 4-146 (146)
24 PF00160 Pro_isomerase: Cyclop 100.0 3.4E-37 7.4E-42 256.8 15.8 150 96-256 1-155 (155)
25 KOG0865 Cyclophilin type pepti 100.0 1.1E-36 2.3E-41 257.8 9.9 163 91-257 2-167 (167)
26 cd01924 cyclophilin_TLP40_like 100.0 2E-35 4.4E-40 253.0 15.5 129 106-237 3-165 (176)
27 KOG0885 Peptidyl-prolyl cis-tr 100.0 9.9E-35 2.1E-39 267.3 12.2 163 84-258 4-168 (439)
28 KOG0415 Predicted peptidyl pro 100.0 2.5E-34 5.4E-39 263.3 13.4 149 107-259 7-164 (479)
29 KOG0882 Cyclophilin-related pe 97.8 2.5E-05 5.4E-10 75.2 4.7 143 110-256 112-261 (558)
30 TIGR03268 methan_mark_3 putati 96.5 0.012 2.5E-07 57.8 8.3 104 110-237 201-304 (503)
31 TIGR03268 methan_mark_3 putati 96.4 0.027 5.9E-07 55.3 10.4 116 110-238 375-497 (503)
32 PRK00969 hypothetical protein; 96.3 0.014 3E-07 57.4 7.9 103 111-237 205-307 (508)
33 COG4070 Predicted peptidyl-pro 96.0 0.013 2.9E-07 56.0 5.9 103 109-237 202-306 (512)
34 COG4070 Predicted peptidyl-pro 96.0 0.022 4.7E-07 54.5 7.2 107 111-238 377-500 (512)
35 PRK00969 hypothetical protein; 95.8 0.07 1.5E-06 52.6 10.2 115 110-238 378-499 (508)
36 PF12903 DUF3830: Protein of u 91.4 1.4 3.1E-05 36.9 8.3 107 110-236 8-130 (147)
37 PF04126 Cyclophil_like: Cyclo 54.2 13 0.00029 29.7 2.9 47 185-236 60-113 (120)
38 COG2164 Uncharacterized conser 50.2 10 0.00022 30.1 1.6 30 207-236 82-117 (126)
39 PHA03001 putative virion core 46.3 89 0.0019 25.7 6.5 50 94-151 5-60 (132)
40 PF05913 DUF871: Bacterial pro 42.0 15 0.00033 35.0 1.7 51 185-236 298-349 (357)
41 PF06138 Chordopox_E11: Chordo 37.8 1.3E+02 0.0029 24.7 6.2 48 94-151 5-61 (130)
42 PF12396 DUF3659: Protein of u 36.8 71 0.0015 22.9 4.1 46 214-261 16-63 (64)
43 PHA03309 transcriptional regul 20.3 1.2E+02 0.0027 32.7 4.0 29 33-61 1811-1839(2033)
No 1
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-54 Score=368.28 Aligned_cols=176 Identities=69% Similarity=1.150 Sum_probs=170.6
Q ss_pred hhhcccCCcCcEEEEEEEECCCCCccceeEEEEEcCCCCchhHHHHHHhhh-CCCcceecCCeEEEeecCcEEeeCCCCC
Q 024818 83 EVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCT-GEKGFGYKGSTFHRVIKDFMIQGGDFDK 161 (262)
Q Consensus 83 ~~~~~~~~~~~~V~~d~~~g~~~~t~~G~IvIeL~~d~AP~tv~nF~~L~~-g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~ 161 (262)
..+.+.+++|++||||+++++ ...|||+|+||++.+|+||+||+.||+ +.++++|.|+.||||+|||||||||+..
T Consensus 30 ~~~~~~p~vT~kV~fdi~~g~---~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~ 106 (217)
T KOG0880|consen 30 KKYEPGPKVTHKVYFDIEIGG---EPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTK 106 (217)
T ss_pred cccCCCCcceeEEEEEEEECC---EeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCcccc
Confidence 456778899999999999997 899999999999999999999999998 8889999999999999999999999999
Q ss_pred CCCCCCcccCCCCCCCCCCCcCCCCCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCC
Q 024818 162 GNGTGGKSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDR 241 (262)
Q Consensus 162 ~~g~g~~s~~g~~~~~e~~~l~h~~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~ 241 (262)
++++|+.++||.+|+||++.|+|.++|.|+||+.|+++||||||||+...+|||++|+|||+|++|||+|.+|+.+++|.
T Consensus 107 g~gtGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~ 186 (217)
T KOG0880|consen 107 GDGTGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDE 186 (217)
T ss_pred CCCCCCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEeeeeeecCCC
Q 024818 242 GDRPGKKVVISDCGELPMSE 261 (262)
Q Consensus 242 ~~~P~~~I~I~~cGvL~~~~ 261 (262)
+++|.++++|.+||+|+++.
T Consensus 187 ~dkP~e~v~I~~~g~l~~~~ 206 (217)
T KOG0880|consen 187 RDKPLEDVVIANCGELPVEY 206 (217)
T ss_pred CCCccccEEEeecCcccccc
Confidence 99999999999999999864
No 2
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-53 Score=387.60 Aligned_cols=167 Identities=66% Similarity=1.066 Sum_probs=162.0
Q ss_pred cCcEEEEEEEECCCCCccceeEEEEEcCCCCchhHHHHHHhhhCCCcc--------eecCCeEEEeecCcEEeeCCCCCC
Q 024818 91 VTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGF--------GYKGSTFHRVIKDFMIQGGDFDKG 162 (262)
Q Consensus 91 ~~~~V~~d~~~g~~~~t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~--------~Y~g~~F~RV~~~fviQ~Gd~~~~ 162 (262)
.+++|||||+||+ ...|||+||||.|.||+||+||+.||+|++|. +|+|+.||||+++|||||||+..+
T Consensus 7 ~~pr~ffDISI~g---e~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~g 83 (372)
T KOG0546|consen 7 TNPRVFFDISIGG---EPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEG 83 (372)
T ss_pred CCceEEEEEEeCC---cccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccC
Confidence 4789999999996 89999999999999999999999999998873 699999999999999999999999
Q ss_pred CCCCCcccCCCCCCCCCCCcCCCCCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCC
Q 024818 163 NGTGGKSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRG 242 (262)
Q Consensus 163 ~g~g~~s~~g~~~~~e~~~l~h~~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~ 242 (262)
+|+||.+|||..|+||++.++|+++++|+|||.|||+||||||||+.+.|+|||+|+|||+||+|++|++.|+...+|..
T Consensus 84 nGtGGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~ 163 (372)
T KOG0546|consen 84 NGTGGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEE 163 (372)
T ss_pred CCCCcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEeeeeeecCC
Q 024818 243 DRPGKKVVISDCGELPMS 260 (262)
Q Consensus 243 ~~P~~~I~I~~cGvL~~~ 260 (262)
.+|..+|+|.+||+|...
T Consensus 164 skP~~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 164 SKPLADVVISDCGELVKK 181 (372)
T ss_pred CCCccceEeccccccccc
Confidence 999999999999999865
No 3
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=6.8e-46 Score=314.12 Aligned_cols=159 Identities=75% Similarity=1.275 Sum_probs=149.2
Q ss_pred cEEEEEEEECCCCCccceeEEEEEcCCCCchhHHHHHHhhhCCCc-----ceecCCeEEEeecCcEEeeCCCCCCCCCCC
Q 024818 93 NKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKG-----FGYKGSTFHRVIKDFMIQGGDFDKGNGTGG 167 (262)
Q Consensus 93 ~~V~~d~~~g~~~~t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g-----~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~ 167 (262)
++||||+++++ ++.|+|+||||.+.||++|+||++||++.++ ++|+++.||||+++|+||+||+..+++.++
T Consensus 1 p~v~~di~i~~---~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~ 77 (164)
T cd01926 1 PKVFFDITIGG---EPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGG 77 (164)
T ss_pred CEEEEEEeECC---eeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCC
Confidence 46999999986 8999999999999999999999999976555 349999999999999999999877778888
Q ss_pred cccCCCCCCCCCCCcCCCCCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCC
Q 024818 168 KSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGK 247 (262)
Q Consensus 168 ~s~~g~~~~~e~~~l~h~~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~~~P~~ 247 (262)
.+++|..+++|...+.|.++|+|+|++.++++++|||||++++.|+||++|+|||||++|||||++|++.+++ +++|.+
T Consensus 78 ~~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~ 156 (164)
T cd01926 78 KSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKK 156 (164)
T ss_pred CcccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcC
Confidence 8899999999988999988999999999999999999999999999999999999999999999999999999 899999
Q ss_pred CeEEeeee
Q 024818 248 KVVISDCG 255 (262)
Q Consensus 248 ~I~I~~cG 255 (262)
+|+|.+||
T Consensus 157 ~i~I~~cG 164 (164)
T cd01926 157 KVVIADCG 164 (164)
T ss_pred CeEEEECC
Confidence 99999998
No 4
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-47 Score=305.33 Aligned_cols=168 Identities=59% Similarity=0.982 Sum_probs=160.0
Q ss_pred ccCCcCcEEEEEEEECCCCCccceeEEEEEcCCCCchhHHHHHHhhhCCCc-----ceecCCeEEEeecCcEEeeCCCCC
Q 024818 87 LQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKG-----FGYKGSTFHRVIKDFMIQGGDFDK 161 (262)
Q Consensus 87 ~~~~~~~~V~~d~~~g~~~~t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g-----~~Y~g~~F~RV~~~fviQ~Gd~~~ 161 (262)
+..+.++.||||+++++ .+.|||.||||.|.+|+|++||++.|+|+.. .+|+++.||||+++|||||||+..
T Consensus 5 ~r~~~nPvVF~dv~igg---~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~ 81 (177)
T KOG0879|consen 5 LRSPNNPVVFFDVAIGG---RPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVN 81 (177)
T ss_pred ccCCCCCeEEEEEeeCC---EEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceec
Confidence 34556888999999996 9999999999999999999999999998532 379999999999999999999999
Q ss_pred CCCCCCcccCCCCCCCCCCCcCCCCCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCC
Q 024818 162 GNGTGGKSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDR 241 (262)
Q Consensus 162 ~~g~g~~s~~g~~~~~e~~~l~h~~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~ 241 (262)
++|+|-.++||..|+||++.++|..+|+|+|++.|++++|.|||||...+.+||++|+|||||++||.++++|+.+++..
T Consensus 82 gDGtG~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~ 161 (177)
T KOG0879|consen 82 GDGTGVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGP 161 (177)
T ss_pred CCCceEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEeeeeee
Q 024818 242 GDRPGKKVVISDCGEL 257 (262)
Q Consensus 242 ~~~P~~~I~I~~cGvL 257 (262)
+++|+-+|.|..||++
T Consensus 162 NnkPKl~v~i~qCGem 177 (177)
T KOG0879|consen 162 NNKPKLPVVIVQCGEM 177 (177)
T ss_pred CCCCCCcEEEeecccC
Confidence 9999999999999985
No 5
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=5.5e-45 Score=313.91 Aligned_cols=162 Identities=63% Similarity=1.080 Sum_probs=150.6
Q ss_pred CcEEEEEEEECCCCCccceeEEEEEcCCCCchhHHHHHHhhhC-------CCcceecCCeEEEeecCcEEeeCCCCCCCC
Q 024818 92 TNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTG-------EKGFGYKGSTFHRVIKDFMIQGGDFDKGNG 164 (262)
Q Consensus 92 ~~~V~~d~~~g~~~~t~~G~IvIeL~~d~AP~tv~nF~~L~~g-------~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g 164 (262)
+++||||+++++ ++.|+|+||||.+.||++|+||++||+| +.++ |+|+.||||+|+|+||+||+..+.+
T Consensus 15 ~~~v~~di~i~~---~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~-Y~~~~fhRvi~~~~iqgGd~~~~~g 90 (183)
T PTZ00060 15 RPKVFFDISIDN---APAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLH-YKGSIFHRIIPQFMCQGGDITNHNG 90 (183)
T ss_pred CCEEEEEEEECC---EeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccc-cCCeEEEEEcCCCeEEeCCccCCCC
Confidence 567999999986 8899999999999999999999999974 2446 9999999999999999999877778
Q ss_pred CCCcccCCCCCCCCCCCcCCCCCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCC
Q 024818 165 TGGKSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDR 244 (262)
Q Consensus 165 ~g~~s~~g~~~~~e~~~l~h~~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~~~ 244 (262)
.++.+++|..+++|...++|.++|+|+|++.++++++|||||++.+.|+||++|+|||||++|||||++|++.+++ +++
T Consensus 91 ~~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~ 169 (183)
T PTZ00060 91 TGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGY 169 (183)
T ss_pred CCCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCC
Confidence 8888899999999988999998999999999999999999999999999999999999999999999999998885 689
Q ss_pred CCCCeEEeeeeeec
Q 024818 245 PGKKVVISDCGELP 258 (262)
Q Consensus 245 P~~~I~I~~cGvL~ 258 (262)
|.++|+|.+||+|.
T Consensus 170 P~~~v~I~~cg~~~ 183 (183)
T PTZ00060 170 PKKPVVVTDCGELQ 183 (183)
T ss_pred CcCCeEEEEeEEcC
Confidence 99999999999984
No 6
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=5e-45 Score=314.92 Aligned_cols=163 Identities=61% Similarity=1.047 Sum_probs=151.5
Q ss_pred CcEEEEEEEECCCCCccceeEEEEEcCCCCchhHHHHHHhhhCCC---c--ceecCCeEEEeecCcEEeeCCCCCCCCCC
Q 024818 92 TNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEK---G--FGYKGSTFHRVIKDFMIQGGDFDKGNGTG 166 (262)
Q Consensus 92 ~~~V~~d~~~g~~~~t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~---g--~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g 166 (262)
.++||||+++++ +..|||+||||.+.||++|+||++||+++. | .+|+++.||||+++|+||+||+..+++.+
T Consensus 18 ~~~v~~di~~~~---~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g 94 (186)
T PLN03149 18 NPVVFFDVTIGG---IPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTG 94 (186)
T ss_pred CCEEEEEEeeCC---cccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCC
Confidence 467999999986 789999999999999999999999997642 2 24999999999999999999987778888
Q ss_pred CcccCCCCCCCCCCCcCCCCCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEE-cCHHHHHHHHhCCCCCCCCC
Q 024818 167 GKSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVL-EGMDIVKLIESQETDRGDRP 245 (262)
Q Consensus 167 ~~s~~g~~~~~e~~~l~h~~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVi-eGmdvL~~I~~~~~~~~~~P 245 (262)
+.++|+..+++|...++|.++|+|+|++.++++++|||||++.++|+||++|+|||||+ +|||||++|++++++++++|
T Consensus 95 ~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P 174 (186)
T PLN03149 95 CVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRP 174 (186)
T ss_pred cccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCC
Confidence 88899999999988899999999999999999999999999999999999999999999 79999999999999999999
Q ss_pred CCCeEEeeeeee
Q 024818 246 GKKVVISDCGEL 257 (262)
Q Consensus 246 ~~~I~I~~cGvL 257 (262)
.++|+|.+||++
T Consensus 175 ~~~i~I~~cG~~ 186 (186)
T PLN03149 175 KLACVISECGEM 186 (186)
T ss_pred cCCeEEEeCEeC
Confidence 999999999985
No 7
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=7.6e-45 Score=325.12 Aligned_cols=166 Identities=36% Similarity=0.586 Sum_probs=151.5
Q ss_pred cCCcCcEEEEEEEECCCCCccceeEEEEEcCCCCchhHHHHHHhhhCCCcc--------eecCCeEEEeecC-cEEeeCC
Q 024818 88 QSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGF--------GYKGSTFHRVIKD-FMIQGGD 158 (262)
Q Consensus 88 ~~~~~~~V~~d~~~g~~~~t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~--------~Y~g~~F~RV~~~-fviQ~Gd 158 (262)
....+++||||+++|+ ...|+|+||||.+.||++|+||++||+|..+. +|+|+.||||+++ |+||+||
T Consensus 48 ~~~~~~rVfldisig~---~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD 124 (249)
T PTZ00221 48 EEQNSCRAFLDISIGD---VLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGE 124 (249)
T ss_pred cCCCCCEEEEEEeeCC---eecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCC
Confidence 3466889999999997 88999999999999999999999999875432 3999999999985 8999999
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCcCCCCCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCC
Q 024818 159 FDKGNGTGGKSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQE 238 (262)
Q Consensus 159 ~~~~~g~g~~s~~g~~~~~e~~~l~h~~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~ 238 (262)
+.. .+.+++|..|.+|.+.++|.++|+|+|++.++++++||||||+.++|+||++|+|||||++|||||++|++++
T Consensus 125 ~~~----~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~ 200 (249)
T PTZ00221 125 LDS----FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLP 200 (249)
T ss_pred CCC----CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCC
Confidence 753 2346778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCeEEeeeeeecCC
Q 024818 239 TDRGDRPGKKVVISDCGELPMS 260 (262)
Q Consensus 239 ~~~~~~P~~~I~I~~cGvL~~~ 260 (262)
++++++|.++|+|.+||+|...
T Consensus 201 ~d~~grP~~~V~I~~Cgvl~~~ 222 (249)
T PTZ00221 201 LDDVGRPLLPVTVSFCGALTGE 222 (249)
T ss_pred cCCCCCCCCCeEEEECeEecCC
Confidence 9889999999999999999864
No 8
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=4.9e-43 Score=295.42 Aligned_cols=150 Identities=47% Similarity=0.808 Sum_probs=139.9
Q ss_pred ccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcccCCCCCCCCC-CCcCCC
Q 024818 107 KLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDEN-FKLSHI 185 (262)
Q Consensus 107 t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s~~g~~~~~e~-~~l~h~ 185 (262)
|+.|+|+||||++.||++|+||++|| +.|+ |+|+.||||+++|++|+||+. +++.++.++++..+++|. ..++|.
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~~~~~~h~ 81 (159)
T cd01923 6 TNKGDLNLELHCDKAPKACENFIKLC--KKGY-YDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFKPNLSHD 81 (159)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHH--hcCc-cCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCcccccCcCcC
Confidence 45688999999999999999999999 6788 999999999999999999974 667888888999998885 468898
Q ss_pred CCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCCCeEEeeeeeecCC
Q 024818 186 GPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGELPMS 260 (262)
Q Consensus 186 ~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~~~P~~~I~I~~cGvL~~~ 260 (262)
++|+|+|++.++++++|||||++++.|+||++|+|||||++|||+|++|++.+++++++|.++|+|.+|+++.+.
T Consensus 82 ~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~dp 156 (159)
T cd01923 82 GRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFVDP 156 (159)
T ss_pred CCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEeCC
Confidence 899999999999999999999999999999999999999999999999999999989999999999999998764
No 9
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-44 Score=287.72 Aligned_cols=153 Identities=50% Similarity=0.884 Sum_probs=144.4
Q ss_pred cEEEEEEEECCCCCccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcccCC
Q 024818 93 NKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYG 172 (262)
Q Consensus 93 ~~V~~d~~~g~~~~t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s~~g 172 (262)
+.|++++++ |.|++|||-+.||+||.||.+|+ ++|| |||..||||+++|||||||+ .++|.||.++||
T Consensus 10 ~~V~LeTsm--------G~i~~ElY~kHaP~TC~NF~eLa--rrgY-Yn~v~FHRii~DFmiQGGDP-TGTGRGGaSIYG 77 (164)
T KOG0881|consen 10 PNVTLETSM--------GKITLELYWKHAPRTCQNFAELA--RRGY-YNGVIFHRIIKDFMIQGGDP-TGTGRGGASIYG 77 (164)
T ss_pred CeEEEeecc--------cceehhhhhhcCcHHHHHHHHHH--hccc-ccceeeeehhhhheeecCCC-CCCCCCcccccc
Confidence 458888876 45999999999999999999999 8999 99999999999999999998 588999999999
Q ss_pred CCCCCCC-CCcCCCCCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCCCeEE
Q 024818 173 RTFKDEN-FKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVI 251 (262)
Q Consensus 173 ~~~~~e~-~~l~h~~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~~~P~~~I~I 251 (262)
..|+||- ..|+|...|.|+|++.||++|||||||||.+.+|||++|++||||..||+|+++|..+.+|..+||..+++|
T Consensus 78 ~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kI 157 (164)
T KOG0881|consen 78 DKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKI 157 (164)
T ss_pred chhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceee
Confidence 9999995 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeee
Q 024818 252 SDCGEL 257 (262)
Q Consensus 252 ~~cGvL 257 (262)
.+.-.+
T Consensus 158 ika~~~ 163 (164)
T KOG0881|consen 158 IKAYPS 163 (164)
T ss_pred EeeecC
Confidence 987543
No 10
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=9.2e-43 Score=290.58 Aligned_cols=143 Identities=54% Similarity=0.928 Sum_probs=134.4
Q ss_pred ccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcccCCCCCCCCCC-CcCCC
Q 024818 107 KLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENF-KLSHI 185 (262)
Q Consensus 107 t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s~~g~~~~~e~~-~l~h~ 185 (262)
|+.|+|+||||.+.||++|+||++|| +.++ |+++.||||+++|++|+||+. +++.++.++++..+++|.. .++|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~h~ 79 (148)
T cd01927 4 TTKGDIHIRLFPEEAPKTVENFTTHA--RNGY-YNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEFSPSLKHD 79 (148)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHh--hcCC-cCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccccccccCcC
Confidence 57899999999999999999999999 6778 999999999999999999974 6778888888989999875 78999
Q ss_pred CCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCCCeEEee
Q 024818 186 GPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISD 253 (262)
Q Consensus 186 ~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~~~P~~~I~I~~ 253 (262)
++|+|+|++.++++++|||||+++++|+||++|+|||||++|||+|++|++++++++++|.++|+|.+
T Consensus 80 ~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 80 RPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred CCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 88999999999999999999999999999999999999999999999999999998999999999986
No 11
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=1.2e-42 Score=291.41 Aligned_cols=145 Identities=49% Similarity=0.833 Sum_probs=135.0
Q ss_pred ccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcccCCCCCCCCCC-CcCCC
Q 024818 107 KLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENF-KLSHI 185 (262)
Q Consensus 107 t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s~~g~~~~~e~~-~l~h~ 185 (262)
|+.|+|+||||++.||++|+||++|| +.++ |+|+.||||+++|++||||+. +++.++.++++..+++|.. .++|.
T Consensus 7 T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~~~ 82 (153)
T cd01928 7 TNLGDIKIELFCDDCPKACENFLALC--ASGY-YNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEFRETLKHD 82 (153)
T ss_pred EccccEEEEEcCCCCcHHHHHHHHHH--hcCc-cCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCccccccccCCCcC
Confidence 46788999999999999999999999 6778 999999999999999999974 5677788888999999875 68898
Q ss_pred CCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCCCeEEeeee
Q 024818 186 GPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCG 255 (262)
Q Consensus 186 ~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~~~P~~~I~I~~cG 255 (262)
++|+|+|++.++++++|||||++++.|+||++|+|||||++|||+|++|++.+++++++|.++|+|.+|.
T Consensus 83 ~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 83 SRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred CCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 8999999999999999999999999999999999999999999999999999999899999999999984
No 12
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-42 Score=291.71 Aligned_cols=145 Identities=52% Similarity=0.843 Sum_probs=131.7
Q ss_pred ccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcccCCCCCCCCCCCcCCCC
Q 024818 107 KLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHIG 186 (262)
Q Consensus 107 t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s~~g~~~~~e~~~l~h~~ 186 (262)
|+.|+|+||||++.||+||+||++|| +.|+ |||+.||||+++||+||||+..+.+.++.. +.+++|.+...|.+
T Consensus 6 t~~G~I~ieL~~~~aP~Tv~NF~~l~--~~g~-Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~---~~f~~E~~~~~~~~ 79 (158)
T COG0652 6 TNKGDITIELYPDKAPKTVANFLQLV--KEGF-YDGTIFHRVIPGFMIQGGDPTGGDGTGGPG---PPFKDENFALNGDR 79 (158)
T ss_pred ccCCCEEEEECCCcCcHHHHHHHHHH--HcCC-CCCceEEEeecCceeecCCCCCCCCCCCCC---CCCccccccccccc
Confidence 67899999999999999999999999 7888 999999999999999999998776777763 78999988777776
Q ss_pred --CcEEEEeecC-CCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCC----CCCCCCeEEeeeeee
Q 024818 187 --PGVVSMANAG-PNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRG----DRPGKKVVISDCGEL 257 (262)
Q Consensus 187 --~G~lsma~~g-~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~----~~P~~~I~I~~cGvL 257 (262)
+|+|+|||.+ |++++|||||++.++|+||++|+|||+|++|||+|++|++..+... +.|..+++|.+..++
T Consensus 80 ~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~~ 157 (158)
T COG0652 80 HKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIV 157 (158)
T ss_pred CCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeeee
Confidence 9999999988 9999999999999999999999999999999999999999888754 456688888887765
No 13
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-43 Score=306.02 Aligned_cols=165 Identities=62% Similarity=1.089 Sum_probs=159.0
Q ss_pred CcCcEEEEEEEECCCCCccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcc
Q 024818 90 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKS 169 (262)
Q Consensus 90 ~~~~~V~~d~~~g~~~~t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s 169 (262)
.-+++||+++.+++ ...|||+++|..|..|.+++||..||+|++||+|+|++||||+|.||+||||++.++|+||.+
T Consensus 134 ~~~pqv~~~ikig~---~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggks 210 (298)
T KOG0111|consen 134 MENPQVYHDIKIGE---DRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKS 210 (298)
T ss_pred hhChHhhhheeecc---cccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCcc
Confidence 34678999999996 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcCCCCCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCCCe
Q 024818 170 IYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKV 249 (262)
Q Consensus 170 ~~g~~~~~e~~~l~h~~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~~~P~~~I 249 (262)
|||..|.||++.|+|..+|+|+|++.|++++||||||++....|||++|+|||.|++||+||+++++.... .++|.+.|
T Consensus 211 iygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsk-sgkp~qkv 289 (298)
T KOG0111|consen 211 IYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSK-SGKPQQKV 289 (298)
T ss_pred cccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCC-CCCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876 78999999
Q ss_pred EEeeeeeec
Q 024818 250 VISDCGELP 258 (262)
Q Consensus 250 ~I~~cGvL~ 258 (262)
.|.+||++.
T Consensus 290 ~i~~cge~~ 298 (298)
T KOG0111|consen 290 KIVECGEIE 298 (298)
T ss_pred EEEeccccC
Confidence 999999974
No 14
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=4.8e-42 Score=291.17 Aligned_cols=150 Identities=42% Similarity=0.651 Sum_probs=134.8
Q ss_pred ccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcccCC-------CCCCCCC
Q 024818 107 KLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYG-------RTFKDEN 179 (262)
Q Consensus 107 t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s~~g-------~~~~~e~ 179 (262)
|+.|+|+||||++.||++|+||++|| +.++ |+|+.||||+++|+||+||+. +++.++.++++ ..+.+|.
T Consensus 4 Ts~G~i~ieL~~~~aP~t~~nF~~L~--~~~~-Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~~~~~~e~ 79 (166)
T cd01921 4 TTLGDLVIDLFTDECPLACLNFLKLC--KLKY-YNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQARFFEPEI 79 (166)
T ss_pred eccCCEEEEEcCCCCCHHHHHHHHHH--hcCC-cCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccCcccCccc
Confidence 56789999999999999999999999 6778 999999999999999999985 55666666654 2455665
Q ss_pred -CCcCCCCCcEEEEeecCCCCCCcceEEEccC-CCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCCCeEEeeeeee
Q 024818 180 -FKLSHIGPGVVSMANAGPNTNGSQFFICTVK-TPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257 (262)
Q Consensus 180 -~~l~h~~~G~lsma~~g~~~~gSqFfItl~~-~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~~~P~~~I~I~~cGvL 257 (262)
..++|..+|+|+|++.++++++|||||++.+ .|+||++|+|||||++|||||++|++++++++++|.++|+|.+|++|
T Consensus 80 ~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~ 159 (166)
T cd01921 80 LPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHIL 159 (166)
T ss_pred CCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEE
Confidence 4788988999999999999999999999986 79999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 024818 258 PMS 260 (262)
Q Consensus 258 ~~~ 260 (262)
...
T Consensus 160 ~~p 162 (166)
T cd01921 160 DDP 162 (166)
T ss_pred CCC
Confidence 753
No 15
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=4.4e-42 Score=285.96 Aligned_cols=142 Identities=51% Similarity=0.933 Sum_probs=132.5
Q ss_pred ccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcccCCCCCCCCC-CCcCCC
Q 024818 107 KLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDEN-FKLSHI 185 (262)
Q Consensus 107 t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s~~g~~~~~e~-~~l~h~ 185 (262)
|+.|+|+||||.+.||++|+||++|| +.++ |+++.||||+++|++||||+. +++.++.++++..+++|. ..++|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~~~~~~h~ 79 (146)
T cd01922 4 TTMGEITLELYWNHAPKTCKNFYELA--KRGY-YNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEIHPELKHT 79 (146)
T ss_pred eccccEEEEEcCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccccccCcCCC
Confidence 67899999999999999999999999 6788 999999999999999999974 567777888899999884 578999
Q ss_pred CCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCCCeEEee
Q 024818 186 GPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISD 253 (262)
Q Consensus 186 ~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~~~P~~~I~I~~ 253 (262)
++|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|++++++ +++|.++|+|.+
T Consensus 80 ~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~ 146 (146)
T cd01922 80 GAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK 146 (146)
T ss_pred CCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence 9999999999999999999999999999999999999999999999999999998 889999999974
No 16
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2.5e-40 Score=282.07 Aligned_cols=159 Identities=41% Similarity=0.690 Sum_probs=143.8
Q ss_pred CCcCcEEEEEEEECCCCCccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCc
Q 024818 89 SKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGK 168 (262)
Q Consensus 89 ~~~~~~V~~d~~~g~~~~t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~ 168 (262)
|+.+.+|.|+++ .|+|+||||++.||++|+||++|| ++++ |+|+.||||+++|++||||+. +++.++.
T Consensus 2 ~~~~~~v~i~Ts--------~G~i~ieL~~~~~P~t~~nF~~L~--~~~~-Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~ 69 (171)
T cd01925 2 PPTTGKVILKTT--------AGDIDIELWSKEAPKACRNFIQLC--LEGY-YDNTIFHRVVPGFIIQGGDPT-GTGTGGE 69 (171)
T ss_pred CCcccEEEEEEc--------cccEEEEEeCCCChHHHHHHHHHH--hcCC-CCCCEEEEEcCCcEEEccccC-CCCccCc
Confidence 344566887774 577999999999999999999999 6778 999999999999999999974 6678888
Q ss_pred ccCCCCCCCCCC-CcCCCCCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEE-cCHHHHHHHHhCCCCCCCCCC
Q 024818 169 SIYGRTFKDENF-KLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVL-EGMDIVKLIESQETDRGDRPG 246 (262)
Q Consensus 169 s~~g~~~~~e~~-~l~h~~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVi-eGmdvL~~I~~~~~~~~~~P~ 246 (262)
++||..+++|.. .++|.++|+|+|++.++++++|||||++++.|+||++|+|||||+ ++|+++++|++++++++++|.
T Consensus 70 s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~ 149 (171)
T cd01925 70 SIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPV 149 (171)
T ss_pred ccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcC
Confidence 899999988864 678888999999999999999999999999999999999999999 468899999999999999999
Q ss_pred CCeEEeeeeeecC
Q 024818 247 KKVVISDCGELPM 259 (262)
Q Consensus 247 ~~I~I~~cGvL~~ 259 (262)
++|+|.+|+++.+
T Consensus 150 ~~i~I~~~~i~~~ 162 (171)
T cd01925 150 YPPKITSVEVLEN 162 (171)
T ss_pred CCeEEEEEEEEcC
Confidence 9999999999874
No 17
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=6.1e-40 Score=284.09 Aligned_cols=155 Identities=34% Similarity=0.529 Sum_probs=131.4
Q ss_pred CcCcEEEEEEEECCCCCccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcc
Q 024818 90 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKS 169 (262)
Q Consensus 90 ~~~~~V~~d~~~g~~~~t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s 169 (262)
+...+|.|++ +.|+|+||||++.||++|+||++|| +.|| |||+.||||+++|++||||+....+ ..
T Consensus 26 ~~~~~v~l~T--------~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRvi~~f~iQgG~~~~~~~---~~ 91 (190)
T PRK10903 26 KGDPHVLLTT--------SAGNIELELNSQKAPVSVKNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQ---QK 91 (190)
T ss_pred CCCcEEEEEe--------ccccEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEeCCceEEeCCcCCCCC---CC
Confidence 4455677776 4578999999999999999999999 7888 9999999999999999999754321 12
Q ss_pred cCCCCCCCCCCCcCCCCCcEEEEeecC-CCCCCcceEEEccCCCCCCC-----CccEEEEEEcCHHHHHHHHhCCCCC--
Q 024818 170 IYGRTFKDENFKLSHIGPGVVSMANAG-PNTNGSQFFICTVKTPWLDQ-----RHVVFGQVLEGMDIVKLIESQETDR-- 241 (262)
Q Consensus 170 ~~g~~~~~e~~~l~h~~~G~lsma~~g-~~~~gSqFfItl~~~p~LD~-----~~~VFGrVieGmdvL~~I~~~~~~~-- 241 (262)
.++..+.+|.....|..+|+|+|++.+ +++++|||||++++.++||+ +|+|||||++|||||++|++.++++
T Consensus 92 ~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~ 171 (190)
T PRK10903 92 KPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVG 171 (190)
T ss_pred CCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCC
Confidence 235567777544444559999999964 89999999999999999984 8999999999999999999999976
Q ss_pred --CCCCCCCeEEeeeeeec
Q 024818 242 --GDRPGKKVVISDCGELP 258 (262)
Q Consensus 242 --~~~P~~~I~I~~cGvL~ 258 (262)
+++|.++|+|.+|++++
T Consensus 172 ~~~~~P~~~v~I~~~~v~~ 190 (190)
T PRK10903 172 PYQNVPSKPVVILSAKVLP 190 (190)
T ss_pred CCCCcccCCeEEEEEEEeC
Confidence 47999999999999975
No 18
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-41 Score=309.15 Aligned_cols=160 Identities=46% Similarity=0.801 Sum_probs=150.2
Q ss_pred CCcCcEEEEEEEECCCCCccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCc
Q 024818 89 SKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGK 168 (262)
Q Consensus 89 ~~~~~~V~~d~~~g~~~~t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~ 168 (262)
..+..+-|..+. |+.|.|.|||++|.+|++|+||++|| ++|| |+|+.|||.++||||||||| .++|.||.
T Consensus 272 ~rvKkkgyvrl~------Tn~G~lNlELhcd~~P~aceNFI~lc--~~gY-Ynnt~FHRsIrnFmiQGGDP-TGTG~GGe 341 (518)
T KOG0883|consen 272 TRVKKKGYVRLV------TNHGPLNLELHCDYAPRACENFITLC--KNGY-YNNTIFHRSIRNFMIQGGDP-TGTGRGGE 341 (518)
T ss_pred ccccccceEEEe------ccCCceeeEeecCcchHHHHHHHHHH--hccc-ccchHHHHHHHHHeeeCCCC-CCCCCCCc
Confidence 345666777775 67899999999999999999999999 8999 99999999999999999998 68999999
Q ss_pred ccCCCCCCCCC-CCcCCCCCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCC
Q 024818 169 SIYGRTFKDEN-FKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGK 247 (262)
Q Consensus 169 s~~g~~~~~e~-~~l~h~~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~~~P~~ 247 (262)
+|||..|.||+ ..|.|..||+|+||+.|+++|||||||+...+.+||++|++||||+.|+|+|.+|+.++++++++|..
T Consensus 342 SiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e 421 (518)
T KOG0883|consen 342 SIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKE 421 (518)
T ss_pred cccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCccc
Confidence 99999999997 57999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEeeeeeec
Q 024818 248 KVVISDCGELP 258 (262)
Q Consensus 248 ~I~I~~cGvL~ 258 (262)
+|+|.+.-|.-
T Consensus 422 ~I~i~~~~VFV 432 (518)
T KOG0883|consen 422 EIKIEDAIVFV 432 (518)
T ss_pred ceEEeeeEEee
Confidence 99999988763
No 19
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1.7e-38 Score=269.22 Aligned_cols=144 Identities=38% Similarity=0.646 Sum_probs=122.9
Q ss_pred ccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcccCCCCCCCCCC-CcCCC
Q 024818 107 KLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENF-KLSHI 185 (262)
Q Consensus 107 t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s~~g~~~~~e~~-~l~h~ 185 (262)
|+.|+|+||||++.||++|+||++|| +.+| ||++.||||+++|+|||||+..+.+. ..++..+.+|.. .++|
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~~~~~~~- 78 (164)
T PRK10791 6 TNHGDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEANNGLKN- 78 (164)
T ss_pred EccccEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCcccccccC-
Confidence 46788999999999999999999999 6788 99999999999999999997543322 223556777753 4556
Q ss_pred CCcEEEEeecC-CCCCCcceEEEccCCCCCC-------C-CccEEEEEEcCHHHHHHHHhCCCCC----CCCCCCCeEEe
Q 024818 186 GPGVVSMANAG-PNTNGSQFFICTVKTPWLD-------Q-RHVVFGQVLEGMDIVKLIESQETDR----GDRPGKKVVIS 252 (262)
Q Consensus 186 ~~G~lsma~~g-~~~~gSqFfItl~~~p~LD-------~-~~~VFGrVieGmdvL~~I~~~~~~~----~~~P~~~I~I~ 252 (262)
++|+|+|++.+ +++++|||||++.++++|| + +|+|||||++|||||++|+++++++ +++|..+|+|.
T Consensus 79 ~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~ 158 (164)
T PRK10791 79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIE 158 (164)
T ss_pred CCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEE
Confidence 59999999974 8999999999999988776 3 7999999999999999999999976 36999999999
Q ss_pred eeeee
Q 024818 253 DCGEL 257 (262)
Q Consensus 253 ~cGvL 257 (262)
+|.+.
T Consensus 159 ~~~i~ 163 (164)
T PRK10791 159 SVTVS 163 (164)
T ss_pred EEEEe
Confidence 99764
No 20
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-39 Score=304.83 Aligned_cols=145 Identities=55% Similarity=0.886 Sum_probs=139.0
Q ss_pred cceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcccCCCCCCCCC-CCcCCCC
Q 024818 108 LAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDEN-FKLSHIG 186 (262)
Q Consensus 108 ~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s~~g~~~~~e~-~~l~h~~ 186 (262)
..|+|.|.||++.||++|+||-..| ++|| |||..||||+++||||+||| .++|+||.++||+.|+||. ..|+|++
T Consensus 412 t~gdi~~kl~p~ecpktvenf~th~--rngy-y~~~~fhriik~fmiqtgdp-~g~gtggesiwg~dfedefh~~lrhdr 487 (558)
T KOG0882|consen 412 TQGDIHIKLYPEECPKTVENFTTHS--RNGY-YDNHTFHRIIKGFMIQTGDP-LGDGTGGESIWGKDFEDEFHPNLRHDR 487 (558)
T ss_pred cccceEEEecccccchhhhhhhccc--cCcc-ccCcchHHhhhhheeecCCC-CCCCCCCcccccccchhhcCcccccCC
Confidence 4567999999999999999999999 8999 99999999999999999998 5889999999999999997 5799999
Q ss_pred CcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCCCeEEeeeee
Q 024818 187 PGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGE 256 (262)
Q Consensus 187 ~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~~~P~~~I~I~~cGv 256 (262)
+-+|+||+.|+|+||||||||+-+.||||++|+|||||+.||||+++|+++.+++.+||+++|.|.+.-+
T Consensus 488 pft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinisv 557 (558)
T KOG0882|consen 488 PFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINISV 557 (558)
T ss_pred CceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999998754
No 21
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2.6e-38 Score=265.66 Aligned_cols=142 Identities=39% Similarity=0.565 Sum_probs=122.2
Q ss_pred ccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcccCCCCCCCCCCCcCCCC
Q 024818 107 KLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHIG 186 (262)
Q Consensus 107 t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s~~g~~~~~e~~~l~h~~ 186 (262)
|+.|+|+||||++.||++|+||++|| +.|| ||++.||||+++|++||||+....+. ..++..+.+|.....|.+
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~~~~~~ 77 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYV--RKGF-YDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEAGNGLSNT 77 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcccccccCC
Confidence 67899999999999999999999999 7788 99999999999999999997543222 233556777765444556
Q ss_pred CcEEEEeecC-CCCCCcceEEEccCCCCCCC-----CccEEEEEEcCHHHHHHHHhCCCCCC----CCCCCCeEEeee
Q 024818 187 PGVVSMANAG-PNTNGSQFFICTVKTPWLDQ-----RHVVFGQVLEGMDIVKLIESQETDRG----DRPGKKVVISDC 254 (262)
Q Consensus 187 ~G~lsma~~g-~~~~gSqFfItl~~~p~LD~-----~~~VFGrVieGmdvL~~I~~~~~~~~----~~P~~~I~I~~c 254 (262)
+|+|+|++.+ +++++|||||++++.|+||. +|+|||||++|||||++|++++++.+ ++|..+|+|.+.
T Consensus 78 ~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~~ 155 (155)
T cd01920 78 RGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIESA 155 (155)
T ss_pred ceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEEC
Confidence 9999999964 89999999999999999995 79999999999999999999999764 689999999763
No 22
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-38 Score=252.87 Aligned_cols=146 Identities=46% Similarity=0.738 Sum_probs=136.5
Q ss_pred ccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcccCCCCCCCCC-CCcCCC
Q 024818 107 KLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDEN-FKLSHI 185 (262)
Q Consensus 107 t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s~~g~~~~~e~-~~l~h~ 185 (262)
+..|+|.||||.+.+|++|+||+.|| ...| |+++.|||-+++|++|+||+ ...|.||.++||..|+||. ..++|+
T Consensus 7 t~~gdikiev~~e~tpktce~~l~~~--~~~~-~n~~~~~~~~~~f~v~~~~~-~~tgrgg~siwg~~fede~~~~lkh~ 82 (161)
T KOG0884|consen 7 TDVGDIKIEVFCERTPKTCENFLALC--ASDY-YNGCIFHRNIKGFMVQTGDP-THTGRGGNSIWGKKFEDEYSEYLKHN 82 (161)
T ss_pred eccCcEEEEEEecCChhHHHHHHHHh--hhhh-ccceeecCCCCCcEEEeCCC-CCCCCCCccccCCcchHHHHHHHhhc
Confidence 34577999999999999999999999 5667 99999999999999999998 5789999999999999997 479999
Q ss_pred CCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCC-CCCCCCeEEeeeee
Q 024818 186 GPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRG-DRPGKKVVISDCGE 256 (262)
Q Consensus 186 ~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~-~~P~~~I~I~~cGv 256 (262)
-||.|+|+++||++++|||||+.+.+|+||-+|+|||+||+|+|+|+.|+..++++. .||..++.|.+.-+
T Consensus 83 ~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~iti 154 (161)
T KOG0884|consen 83 VRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154 (161)
T ss_pred cceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEE
Confidence 999999999999999999999999999999999999999999999999999999876 89999999988654
No 23
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=3.3e-37 Score=254.72 Aligned_cols=142 Identities=61% Similarity=0.936 Sum_probs=126.8
Q ss_pred ccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcccCCCCCCCCCCCcC-CC
Q 024818 107 KLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLS-HI 185 (262)
Q Consensus 107 t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s~~g~~~~~e~~~l~-h~ 185 (262)
|+.|+|+||||++.||++|+||++|| +.++ |+++.|||+++++++|+||+......+ +.++..+++|..... |.
T Consensus 4 T~~G~i~IeL~~~~~P~~~~nF~~l~--~~~~-Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~~~~~~ 78 (146)
T cd00317 4 TTKGRIVIELYGDEAPKTVENFLSLA--RGGF-YDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENFPLKYHH 78 (146)
T ss_pred eccCcEEEEEcCCCChHHHHHHHHHH--hcCC-cCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccccCcCcC
Confidence 46689999999999999999999999 5666 999999999999999999986543322 345678888876554 77
Q ss_pred CCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCCCeEEee
Q 024818 186 GPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISD 253 (262)
Q Consensus 186 ~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~~~P~~~I~I~~ 253 (262)
++|+|+|++.+++++++||||++.+.++||++|+|||||++|||+|++|++.+++++++|.++|+|.+
T Consensus 79 ~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 79 RRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred CCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 79999999999999999999999999999999999999999999999999999999999999999974
No 24
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=3.4e-37 Score=256.81 Aligned_cols=150 Identities=50% Similarity=0.868 Sum_probs=128.4
Q ss_pred EEEEEECCCCCccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCC-cccCCCC
Q 024818 96 YFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGG-KSIYGRT 174 (262)
Q Consensus 96 ~~d~~~g~~~~t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~-~s~~g~~ 174 (262)
||+++.+ ..|+|+||||++.||++|+||++|| +.++ |+|+.|||+++++++|+|++......+. ....+..
T Consensus 1 ~~~i~t~-----~~G~i~ieL~~~~aP~~~~nF~~l~--~~~~-y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~ 72 (155)
T PF00160_consen 1 FVDIETS-----GLGRIVIELFGDEAPKTVENFLRLC--TSGF-YDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEP 72 (155)
T ss_dssp EEEEEET-----TEEEEEEEEETTTSHHHHHHHHHHH--HTTS-STTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSC
T ss_pred CEEEEeC-----CccCEEEEEeCCCCcHHHHhhehhh--cccc-cCCceeecccccceeeeeeccCCCCcccccccCccc
Confidence 6777632 1899999999999999999999999 5566 9999999999999999999764433111 1223446
Q ss_pred CCCCC--CCcCCCCCcEEEEeecC--CCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCCCeE
Q 024818 175 FKDEN--FKLSHIGPGVVSMANAG--PNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVV 250 (262)
Q Consensus 175 ~~~e~--~~l~h~~~G~lsma~~g--~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~~~P~~~I~ 250 (262)
+++|. ..+.| ++|+|+|++.+ +++++|||||+|.+.|+||++|+|||||++|||+|++|++.++++ +|.++|+
T Consensus 73 ~~~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~ 149 (155)
T PF00160_consen 73 IPDEFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVT 149 (155)
T ss_dssp BSSSGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEE
T ss_pred cccccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeE
Confidence 78887 36777 59999999975 788999999999999999999999999999999999999999986 9999999
Q ss_pred Eeeeee
Q 024818 251 ISDCGE 256 (262)
Q Consensus 251 I~~cGv 256 (262)
|.+|||
T Consensus 150 I~~cgv 155 (155)
T PF00160_consen 150 ISSCGV 155 (155)
T ss_dssp EEEEEE
T ss_pred EEEeEC
Confidence 999997
No 25
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-36 Score=257.76 Aligned_cols=163 Identities=66% Similarity=1.151 Sum_probs=153.9
Q ss_pred cCcEEEEEEEECCCCCccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEE---eecCcEEeeCCCCCCCCCCC
Q 024818 91 VTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHR---VIKDFMIQGGDFDKGNGTGG 167 (262)
Q Consensus 91 ~~~~V~~d~~~g~~~~t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~R---V~~~fviQ~Gd~~~~~g~g~ 167 (262)
.+++||||+++++ +++|++.++||.|..|+|++||..||+|+++++|++..||| .+++|++|+||.+..+++++
T Consensus 2 ~~~~vf~d~~~~~---~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtgg 78 (167)
T KOG0865|consen 2 VNPTVFFDIAIDG---EPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGG 78 (167)
T ss_pred CCCeeeeeeeecC---ccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccc
Confidence 3678999999985 89999999999999999999999999999999999999999 34579999999999999999
Q ss_pred cccCCCCCCCCCCCcCCCCCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCC
Q 024818 168 KSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGK 247 (262)
Q Consensus 168 ~s~~g~~~~~e~~~l~h~~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~~~P~~ 247 (262)
.++|++.|.||++.++|..+|+|+|++.+|++++|||||++....|||++|+|||+|.+||+++++|+.. ..+++++.+
T Consensus 79 kSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~-gs~~gk~~~ 157 (167)
T KOG0865|consen 79 KSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERF-GSRNGKTSK 157 (167)
T ss_pred eEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhcc-CCcCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984 445899999
Q ss_pred CeEEeeeeee
Q 024818 248 KVVISDCGEL 257 (262)
Q Consensus 248 ~I~I~~cGvL 257 (262)
+|.|.+||+|
T Consensus 158 ~i~i~dcg~l 167 (167)
T KOG0865|consen 158 KITIADCGQL 167 (167)
T ss_pred cEEEecCCcC
Confidence 9999999986
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=2e-35 Score=253.02 Aligned_cols=129 Identities=40% Similarity=0.627 Sum_probs=107.4
Q ss_pred CccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCC-C-------------------C
Q 024818 106 GKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGN-G-------------------T 165 (262)
Q Consensus 106 ~t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~-g-------------------~ 165 (262)
.|+.|+|+||||++.||++|+||++|| +.+| ||++.||||+++|||||||+.... + .
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~ 79 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLV--ERGF-YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEG 79 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHH--HhCC-cCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccC
Confidence 378899999999999999999999999 7888 999999999999999999985331 0 1
Q ss_pred CCcccCCCCCC-----CCCCCcCCCCCcEEEEeecC--CCCCCcceEEEcc-------CCCCCCCCccEEEEEEcCHHHH
Q 024818 166 GGKSIYGRTFK-----DENFKLSHIGPGVVSMANAG--PNTNGSQFFICTV-------KTPWLDQRHVVFGQVLEGMDIV 231 (262)
Q Consensus 166 g~~s~~g~~~~-----~e~~~l~h~~~G~lsma~~g--~~~~gSqFfItl~-------~~p~LD~~~~VFGrVieGmdvL 231 (262)
.+.++++..+. ++...+.|..+|+|+|++.+ +++++|||||+++ +.|+||++|+|||||++|||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl 159 (176)
T cd01924 80 QKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDIL 159 (176)
T ss_pred CCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHH
Confidence 12234444432 34444555569999999987 6999999999998 7899999999999999999999
Q ss_pred HHHHhC
Q 024818 232 KLIESQ 237 (262)
Q Consensus 232 ~~I~~~ 237 (262)
++|+..
T Consensus 160 ~~I~~g 165 (176)
T cd01924 160 RELKVG 165 (176)
T ss_pred HhhcCC
Confidence 999754
No 27
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-35 Score=267.29 Aligned_cols=163 Identities=40% Similarity=0.667 Sum_probs=151.1
Q ss_pred hhcccCCcCcEEEEEEEECCCCCccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCC
Q 024818 84 VADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGN 163 (262)
Q Consensus 84 ~~~~~~~~~~~V~~d~~~g~~~~t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~ 163 (262)
.+-+.|..+.+|.+.++. |+|.||||+..||++|.||++|| -.|| |+|+.|||++|+|++||||+ +++
T Consensus 4 ~~~~EP~ttgkvil~TT~--------G~I~iELW~kE~P~acrnFiqKO--Gegy-y~nt~fhrlvp~f~~Qggdp-~~~ 71 (439)
T KOG0885|consen 4 SYNLEPPTTGKVILKTTK--------GDIDIELWAKECPKACRNFIQLC--LEGY-YDNTEFHRLVPGFLVQGGDP-TGT 71 (439)
T ss_pred ccccCCCccceEEEEecc--------CceeeeehhhhhhHHHHHHHHHH--Hhcc-ccCceeeeeccchhcccCCC-CCC
Confidence 345677888899998865 55999999999999999999999 7888 99999999999999999998 588
Q ss_pred CCCCcccCCCCCCCCC-CCcCCCCCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEc-CHHHHHHHHhCCCCC
Q 024818 164 GTGGKSIYGRTFKDEN-FKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLE-GMDIVKLIESQETDR 241 (262)
Q Consensus 164 g~g~~s~~g~~~~~e~-~~l~h~~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVie-GmdvL~~I~~~~~~~ 241 (262)
|+||.+|||+.|.+|. .++++.++|+|+|++.+.+.||||||+||++.|+|+++|++||+|+. -+..+-+|..+.++.
T Consensus 72 gtGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida 151 (439)
T KOG0885|consen 72 GTGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDA 151 (439)
T ss_pred CCCccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhccccccc
Confidence 9999999999999996 57999999999999999999999999999999999999999999994 788999999999999
Q ss_pred CCCCCCCeEEeeeeeec
Q 024818 242 GDRPGKKVVISDCGELP 258 (262)
Q Consensus 242 ~~~P~~~I~I~~cGvL~ 258 (262)
+.||..+-+|.+|-||-
T Consensus 152 ~~Rp~~p~kI~s~EV~~ 168 (439)
T KOG0885|consen 152 DDRPVDPPKIKSVEVLI 168 (439)
T ss_pred ccCCCCccceeeeEeec
Confidence 99999999999999874
No 28
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-34 Score=263.30 Aligned_cols=149 Identities=43% Similarity=0.640 Sum_probs=136.6
Q ss_pred ccceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcccCCC-------CCCCCC
Q 024818 107 KLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGR-------TFKDEN 179 (262)
Q Consensus 107 t~~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s~~g~-------~~~~e~ 179 (262)
|.+|+|+|+||-+.+|.+|.||++|| +..| ||.|.||.|+.+|++|.|||. ++|.||.++||. .|+.|.
T Consensus 7 TtlGDlvIDLf~~erP~~clNFLKLC--k~KY-YN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~rffeaE~ 82 (479)
T KOG0415|consen 7 TTLGDLVIDLFVKERPRTCLNFLKLC--KIKY-YNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQARFFEAEF 82 (479)
T ss_pred eecccEEeeeecccCcHHHHHHHHHH--hHhh-cccceeeeccccceeecCCCC-CCCCCcceeeeecccccchhhhhhh
Confidence 35677999999999999999999999 6667 999999999999999999984 689999998764 345554
Q ss_pred -CCcCCCCCcEEEEeecCCCCCCcceEEEccCC-CCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCCCeEEeeeeee
Q 024818 180 -FKLSHIGPGVVSMANAGPNTNGSQFFICTVKT-PWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGEL 257 (262)
Q Consensus 180 -~~l~h~~~G~lsma~~g~~~~gSqFfItl~~~-p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~~~P~~~I~I~~cGvL 257 (262)
++++|.+.|+|+|++.|.+.+||||||||+++ .+||++|+|||+|.||||+|.+|+...+|++++|+++|+|.+.-+|
T Consensus 83 ~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTiiL 162 (479)
T KOG0415|consen 83 LPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTIIL 162 (479)
T ss_pred cccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEEe
Confidence 58999999999999999999999999999985 5999999999999999999999999999999999999999999999
Q ss_pred cC
Q 024818 258 PM 259 (262)
Q Consensus 258 ~~ 259 (262)
++
T Consensus 163 dD 164 (479)
T KOG0415|consen 163 DD 164 (479)
T ss_pred cC
Confidence 75
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=2.5e-05 Score=75.19 Aligned_cols=143 Identities=20% Similarity=0.246 Sum_probs=115.4
Q ss_pred eeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcc--cCCC---CCCC--CCCCc
Q 024818 110 GRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKS--IYGR---TFKD--ENFKL 182 (262)
Q Consensus 110 G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s--~~g~---~~~~--e~~~l 182 (262)
--|.|+++.+-.|.-++-|.++| ..++ +++..|.||...+++|.||-......+|.- |-++ .+++ .++.+
T Consensus 112 s~IAVs~~~sg~i~VvD~~~d~~--q~~~-fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~ 188 (558)
T KOG0882|consen 112 SLIAVSLFKSGKIFVVDGFGDFC--QDGY-FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFEL 188 (558)
T ss_pred eeEEeecccCCCcEEECCcCCcC--ccce-ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccc
Confidence 38999999999999999999999 7888 999999999999999999854332222221 1112 1222 35678
Q ss_pred CCCCCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCCCCCCCCCCCCeEEeeeee
Q 024818 183 SHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPGKKVVISDCGE 256 (262)
Q Consensus 183 ~h~~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~~~~~~~P~~~I~I~~cGv 256 (262)
+|. .-++..........+-+|.+.-.+.+.+..+..|||++.+|-++++.|.+..++....|+.++.|.+.-.
T Consensus 189 K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Vel 261 (558)
T KOG0882|consen 189 KHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVEL 261 (558)
T ss_pred ccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeeh
Confidence 887 5567777766666788999999999999999999999999999999999999999999999998887654
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.46 E-value=0.012 Score=57.78 Aligned_cols=104 Identities=23% Similarity=0.409 Sum_probs=66.4
Q ss_pred eeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcccCCCCCCCCCCCcCCCCCcE
Q 024818 110 GRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHIGPGV 189 (262)
Q Consensus 110 G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s~~g~~~~~e~~~l~h~~~G~ 189 (262)
=.+.+||. ..+|.++++|+.+. +.|. + .+.+...-|+- .....|...+.|+... .++|+
T Consensus 201 Ty~evE~~-~~~p~s~EH~la~~--~~G~-~---~Vd~~tsTfi~------------d~~L~g~~~p~En~~~--R~rGt 259 (503)
T TIGR03268 201 TYVEVELD-PNAPVSVEHFLALM--EDGT-F---RVDYRTSTFIS------------DDSLRGLDKPEENIEK--RRRGA 259 (503)
T ss_pred EEEEEEEc-CCCChhHHHHHHHH--hCCe-E---EEeeeecceEe------------cccccCccCCccccCc--cccee
Confidence 36778876 68999999999999 6664 1 11111111111 1122234445555433 34899
Q ss_pred EEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhC
Q 024818 190 VSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQ 237 (262)
Q Consensus 190 lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~ 237 (262)
|.+.+.|.+ ....||-..+.+ -.-.|+|+|||+.|||+++--+..
T Consensus 260 VTVRn~G~G--~G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~G 304 (503)
T TIGR03268 260 VTVRNSGVG--EGRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQEG 304 (503)
T ss_pred EEEEeeccC--ceeEEEEcCCCC-CCcccceeEEEecceeeeecccCC
Confidence 999997644 236899877765 345699999999999998765443
No 31
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.40 E-value=0.027 Score=55.26 Aligned_cols=116 Identities=22% Similarity=0.321 Sum_probs=63.9
Q ss_pred eeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcccCCCCCCCCCCCcCCCCCcE
Q 024818 110 GRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHIGPGV 189 (262)
Q Consensus 110 G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s~~g~~~~~e~~~l~h~~~G~ 189 (262)
.-|.|+||.+.||+++..|+++. |-+-..-=-..+|-..++-++.-|+.. ++..+.+|+..-.-...|.
T Consensus 375 ~vi~IeLydd~AP~s~~yFRk~t-GL~~~~VG~L~v~F~~~d~~mFk~~~~----------~~k~LiPEN~P~~~V~ag~ 443 (503)
T TIGR03268 375 KVIEIELYDDNAPRSVWYFRKFT-GLKTKPVGRLPVHFAFKEMIMFKGNKE----------LAKGLIPENTPEDKVEAGV 443 (503)
T ss_pred hEEEEEEcccCCchHHHHHHHhc-CCcccccceeEEEEEeCCeeEeccCch----------hccccCCCCCCCCccccce
Confidence 35999999999999999999986 111000011334444555333333321 2234555655444555677
Q ss_pred EEEeecCCCCCCcceEEEc------cCCC-CCCCCccEEEEEEcCHHHHHHHHhCC
Q 024818 190 VSMANAGPNTNGSQFFICT------VKTP-WLDQRHVVFGQVLEGMDIVKLIESQE 238 (262)
Q Consensus 190 lsma~~g~~~~gSqFfItl------~~~p-~LD~~~~VFGrVieGmdvL~~I~~~~ 238 (262)
+++-|......|- .=|=+ ++.. .+++.+ ++|||++++|.|+++.+..
T Consensus 444 IgvTN~a~k~~G~-IGVRl~d~defGPTGE~F~gTN-IiG~Vv~~~e~Lk~~KeGd 497 (503)
T TIGR03268 444 IGVTNQACKHVGM-IGVRLEDSDEFGPTGEPFSGTN-IIGRVVEGMERLKGLKEGD 497 (503)
T ss_pred EeeechhhhcCce-EEEEccCCcccCCCCCCccCcc-eEEEecCChhHhcccccCc
Confidence 7776643211110 00111 2322 244443 5699999999999987643
No 32
>PRK00969 hypothetical protein; Provisional
Probab=96.33 E-value=0.014 Score=57.42 Aligned_cols=103 Identities=23% Similarity=0.439 Sum_probs=65.9
Q ss_pred eEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcccCCCCCCCCCCCcCCCCCcEE
Q 024818 111 RIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHIGPGVV 190 (262)
Q Consensus 111 ~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s~~g~~~~~e~~~l~h~~~G~l 190 (262)
.+.+||. ..+|.++++|+.+. +.|. + .+.+...-|+- .....|...+.|+...+ ++|+|
T Consensus 205 y~eve~~-~~~p~s~EH~la~~--~~G~-f---~Vd~~tstfI~------------d~~L~g~~~p~En~~~R--~~GtV 263 (508)
T PRK00969 205 YVEVELD-PGAPKSVEHFLALL--EDGT-F---EVDFETSTFIA------------DDRLQGLKIPEENFEPR--RRGTV 263 (508)
T ss_pred EEEEEEc-CCCCchHHHHHHHH--hCCe-E---EEeeeecceEe------------eccccCccCCccccCcc--ccceE
Confidence 5777776 57999999999999 6664 1 11111111111 11223344555554333 47999
Q ss_pred EEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhC
Q 024818 191 SMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQ 237 (262)
Q Consensus 191 sma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~ 237 (262)
.+.+.|.+ ....||-..+.+ -.-.|+|+|+|+.|||+++--.+.
T Consensus 264 TVRt~G~g--~G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~G 307 (508)
T PRK00969 264 TVRTAGVG--VGKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKEG 307 (508)
T ss_pred EEEeeccC--ceeEEEECCCCC-CCccceeEEEEecceeeeecccCC
Confidence 99997644 336899877765 344699999999999998765443
No 33
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.013 Score=55.96 Aligned_cols=103 Identities=27% Similarity=0.494 Sum_probs=66.7
Q ss_pred ceeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEe--ecCcEEeeCCCCCCCCCCCcccCCCCCCCCCCCcCCCC
Q 024818 109 AGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRV--IKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHIG 186 (262)
Q Consensus 109 ~G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV--~~~fviQ~Gd~~~~~g~g~~s~~g~~~~~e~~~l~h~~ 186 (262)
.-.+.+||. ..+|+++++|+.|. +.|. .|| ..|-++ +..+..+...+.|++.++ +
T Consensus 202 fTy~eve~s-~nsP~saEH~lalm--edG~-------lri~~~tntfi-----------s~~~lq~~~~~~en~d~R--e 258 (512)
T COG4070 202 FTYFEVELS-RNSPKSAEHFLALM--EDGT-------LRIDVTTNTFI-----------SDDTLQEEKVPEENFDLR--E 258 (512)
T ss_pred EEEEEEEeC-CCCchhHHHHHHHh--hcce-------EEEEEecccee-----------eccccccccCChhhhhhh--h
Confidence 346778877 46999999999999 6653 122 112111 112233455666665554 3
Q ss_pred CcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhC
Q 024818 187 PGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQ 237 (262)
Q Consensus 187 ~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~ 237 (262)
+|.+.+.+.|.+ ...-||--.+-+ ---.|.|+|||++|||++|--.+.
T Consensus 259 rG~iTvRn~Gvg--eGrvYIyRedR~-ss~sHnvVGrV~eGiELid~a~eG 306 (512)
T COG4070 259 RGAITVRNVGVG--EGRVYIYREDRP-SSLSHNVVGRVIEGIELIDLAEEG 306 (512)
T ss_pred cceEEEEeeecc--cceEEEEecCCC-CccccceeeeeecceEEEEecccC
Confidence 799999987644 236788766544 224588999999999998866543
No 34
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.022 Score=54.51 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecC-cEE-eeCCCCCCCCCCCcccCCCCCCCCCC--------
Q 024818 111 RIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKD-FMI-QGGDFDKGNGTGGKSIYGRTFKDENF-------- 180 (262)
Q Consensus 111 ~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~-fvi-Q~Gd~~~~~g~g~~s~~g~~~~~e~~-------- 180 (262)
-|.||||.+.||.++..|+++..-...- ---...|-..++ +++ .-|+... ++.+.+|+.
T Consensus 377 iieIELyed~APrSv~yFRr~t~l~~kp-VGkL~Vhfay~d~~~vmfegn~~~----------~K~llPEN~P~d~Ve~g 445 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTGLKTKP-VGKLKVHFAYDDTYLVMFEGNAVL----------AKGLLPENTPADTVEAG 445 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhccccccc-ccceEEEEEeCCceEEEEcCChHH----------hccCCCCCCchhheecc
Confidence 4899999999999999999886211100 112334444444 222 2233221 122333332
Q ss_pred -------CcCCCCCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEcCHHHHHHHHhCC
Q 024818 181 -------KLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQE 238 (262)
Q Consensus 181 -------~l~h~~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVieGmdvL~~I~~~~ 238 (262)
..+| .|+++..-.+.+. +++.-+-=..--++|||++|.+-|..|.+..
T Consensus 446 ~iGvTN~a~r~--~GmIGVRL~dsde--------fGPTGE~Fe~TNiIGrIveg~e~l~~ikeGd 500 (512)
T COG4070 446 EIGVTNQAARH--MGMIGVRLEDSDE--------FGPTGEKFEGTNIIGRIVEGPERLIGIKEGD 500 (512)
T ss_pred cccccccchhc--cceeEEEeccccc--------cCCCCCccccceeehhhccChHHhcccccCC
Confidence 2333 3566554433221 1222211123457899999999999997743
No 35
>PRK00969 hypothetical protein; Provisional
Probab=95.85 E-value=0.07 Score=52.58 Aligned_cols=115 Identities=18% Similarity=0.242 Sum_probs=64.4
Q ss_pred eeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecCcEEeeCCCCCCCCCCCcccCCCCCCCCCCCcCCCCCcE
Q 024818 110 GRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHIGPGV 189 (262)
Q Consensus 110 G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~fviQ~Gd~~~~~g~g~~s~~g~~~~~e~~~l~h~~~G~ 189 (262)
--|.||||.+.||+++..|+++..=...- -=-..+|-..++-++.-|+.. ++..+.+|+..-.-...|.
T Consensus 378 ~vi~IeLydd~AP~s~~yFR~~tGL~~~~-VG~L~v~F~~~d~~lFk~~~~----------~~k~liPEN~P~~~V~ag~ 446 (508)
T PRK00969 378 KLIEIELYDDKAPRTVWYFRKVTGLKTKP-VGKLPVYFKYEDTYLFKGNIE----------YAKGLLPENTPEDKVKAGE 446 (508)
T ss_pred HEEEEEEcCcCCchHHHHHHHhcCCcccc-cceeEEEEEeCCeEEEccChh----------hccccCCCCCCCCccccce
Confidence 35999999999999999999986110000 012334445555444433322 2234556665555555777
Q ss_pred EEEeecCCCCCCcceEEEc------cCCC-CCCCCccEEEEEEcCHHHHHHHHhCC
Q 024818 190 VSMANAGPNTNGSQFFICT------VKTP-WLDQRHVVFGQVLEGMDIVKLIESQE 238 (262)
Q Consensus 190 lsma~~g~~~~gSqFfItl------~~~p-~LD~~~~VFGrVieGmdvL~~I~~~~ 238 (262)
|++-|......|- .=|=+ ++.. .+++. -++|||+ ++|-|+++.+..
T Consensus 447 IgvTN~a~k~~G~-iGVR~~d~d~fGPTGE~F~gT-NIIGrVv-~~e~Lk~lKeGd 499 (508)
T PRK00969 447 IGVTNMAAKYKGM-IGVRLSDNDEFGPTGEPFEGT-NIIGRVV-NLEKLKKLKEGD 499 (508)
T ss_pred EeeechhhhcCce-EEEEccCCcccCCCCCCccCc-eeEEEec-ChHHhcccccCC
Confidence 7776643221110 00111 2222 24443 4679999 999999987643
No 36
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=91.37 E-value=1.4 Score=36.92 Aligned_cols=107 Identities=21% Similarity=0.184 Sum_probs=54.5
Q ss_pred eeEEEEEcCCCCchhHHHHHHhhhCCCcceecCCeEEEeecC--cEEeeCCCCCCCCCCCcccCCCCCCCCCCCcCCCCC
Q 024818 110 GRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKD--FMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHIGP 187 (262)
Q Consensus 110 G~IvIeL~~d~AP~tv~nF~~L~~g~~g~~Y~g~~F~RV~~~--fviQ~Gd~~~~~g~g~~s~~g~~~~~e~~~l~h~~~ 187 (262)
-.++.+|..|.||+||+.|.++- -|.+..+|-..-+ .++.-++... .....|+. -.|-.+
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~L------P~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN~-T~~P~p 69 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEAL------PLKGKVIHARWSGEEIWIPLPDFDP-----------FEPGRENH-TVTPIP 69 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH--------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-SE-ESS--T
T ss_pred eEEEEEEcccCChHHHHHHHHhC------CCCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCcC-cccCCC
Confidence 46899999999999999999987 1666667655544 3444455320 01122332 223336
Q ss_pred cEEEEee---cCCC--CC-CcceEEEccCCC--------CCCCCccEEEEEEcCHHHHHHHHh
Q 024818 188 GVVSMAN---AGPN--TN-GSQFFICTVKTP--------WLDQRHVVFGQVLEGMDIVKLIES 236 (262)
Q Consensus 188 G~lsma~---~g~~--~~-gSqFfItl~~~p--------~LD~~~~VFGrVieGmdvL~~I~~ 236 (262)
|-|.+.= ...+ .. -++.=|.++... ++- -.+|++|++|+|-|.++-+
T Consensus 70 Gdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~--GN~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 70 GDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLP--GNHFATITEGLEELAEACR 130 (147)
T ss_dssp TEEEEE-----------E-EEEEEEE-SSS---EETTTEE----EEEEEEEEESHHHHHHHHH
T ss_pred CcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccc--eeEEEEEcCCHHHHHHHHH
Confidence 7666651 0101 11 133334343332 222 3689999999998877654
No 37
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=54.16 E-value=13 Score=29.74 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=29.3
Q ss_pred CCCcEEEEeecCCCCCCcceEEEccCCC-------CCCCCccEEEEEEcCHHHHHHHHh
Q 024818 185 IGPGVVSMANAGPNTNGSQFFICTVKTP-------WLDQRHVVFGQVLEGMDIVKLIES 236 (262)
Q Consensus 185 ~~~G~lsma~~g~~~~gSqFfItl~~~p-------~LD~~~~VFGrVieGmdvL~~I~~ 236 (262)
.+.|.|+.-..+.+ |-|-+++.| .+-....++|||.+|.+.|+++..
T Consensus 60 ~~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 60 VEAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp B-TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred ccCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 34788887654433 777777775 445668999999999999888854
No 38
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=50.15 E-value=10 Score=30.09 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=22.2
Q ss_pred EccCCCCCCCC------ccEEEEEEcCHHHHHHHHh
Q 024818 207 CTVKTPWLDQR------HVVFGQVLEGMDIVKLIES 236 (262)
Q Consensus 207 tl~~~p~LD~~------~~VFGrVieGmdvL~~I~~ 236 (262)
.++..|--|.+ .-|+||++++||.|.++..
T Consensus 82 FFGkTpmsddkiqPaSaVNvIGrIv~~lE~lk~v~d 117 (126)
T COG2164 82 FFGKTPMSDDKIQPASAVNVIGRIVKNLELLKSVDD 117 (126)
T ss_pred EecCCcCcccccCccchHHHHHHHHhhHHhhhcccC
Confidence 34566656655 3589999999999988754
No 39
>PHA03001 putative virion core protein; Provisional
Probab=46.34 E-value=89 Score=25.68 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=33.8
Q ss_pred EEEEEEEECCCCCccceeEEEEEcCCCCch------hHHHHHHhhhCCCcceecCCeEEEeecC
Q 024818 94 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQ------TAENFRALCTGEKGFGYKGSTFHRVIKD 151 (262)
Q Consensus 94 ~V~~d~~~g~~~~t~~G~IvIeL~~d~AP~------tv~nF~~L~~g~~g~~Y~g~~F~RV~~~ 151 (262)
.||+++..|. =+|.++.-...||. ++++|++.. ++=..-+.+.|+-++++
T Consensus 5 NIfLEsd~gr------vkl~~~~~~~~~~~~~~~~ka~~~fl~~L--~kYi~v~eStFylvvrd 60 (132)
T PHA03001 5 NIFLETDAGR------VKLAIENPDKVCATKAEMRKAINKFLELL--KKYIHVDKSTFYLVVKD 60 (132)
T ss_pred EEEEeccCCc------eEEEEcCCCccccccchHHHHHHHHHHHH--HhhEEecccEEEEEEec
Confidence 4777775432 24555556666665 678999988 44223588999999988
No 40
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=42.05 E-value=15 Score=35.02 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=34.9
Q ss_pred CCCcEEEEeecCCCCCCcceEEEccCCCCCCCCccEEEEEEc-CHHHHHHHHh
Q 024818 185 IGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLE-GMDIVKLIES 236 (262)
Q Consensus 185 ~~~G~lsma~~g~~~~gSqFfItl~~~p~LD~~~~VFGrVie-GmdvL~~I~~ 236 (262)
.++|.|.+-|..-..-..|.=|++.+.|. |++.-|+|+|.+ -+.+|+-|..
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred ccCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCC
Confidence 34899999997666667789999999984 899999999996 7889988864
No 41
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=37.83 E-value=1.3e+02 Score=24.66 Aligned_cols=48 Identities=19% Similarity=0.405 Sum_probs=31.4
Q ss_pred EEEEEEEECCCCCccceeEEEEEcCC--CCch-------hHHHHHHhhhCCCcceecCCeEEEeecC
Q 024818 94 KVYFDVSIGNPVGKLAGRIVIGLYGD--DVPQ-------TAENFRALCTGEKGFGYKGSTFHRVIKD 151 (262)
Q Consensus 94 ~V~~d~~~g~~~~t~~G~IvIeL~~d--~AP~-------tv~nF~~L~~g~~g~~Y~g~~F~RV~~~ 151 (262)
.+|+++. .||+.+....+ .||. +++.|++.. ++=..-+.+.|+-++++
T Consensus 5 NIfLEsd--------~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L--~kyI~veeStFylvvrd 61 (130)
T PF06138_consen 5 NIFLESD--------SGRVKLRYEEPDCKCARTGCEARRAVKHFLSVL--KKYIDVEESTFYLVVRD 61 (130)
T ss_pred EEEEecc--------CceeEEEEeCCCcccccccchHHHHHHHHHHHH--HhhEEecccEEEEEEec
Confidence 4677764 45565555433 3333 578899888 44223578999999988
No 42
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=36.78 E-value=71 Score=22.93 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=29.8
Q ss_pred CCCCccEEEEEEcCHHHHHHHHhCCCCCCCCC--CCCeEEeeeeeecCCC
Q 024818 214 LDQRHVVFGQVLEGMDIVKLIESQETDRGDRP--GKKVVISDCGELPMSE 261 (262)
Q Consensus 214 LD~~~~VFGrVieGmdvL~~I~~~~~~~~~~P--~~~I~I~~cGvL~~~~ 261 (262)
+|..-.++|||++| -+++|.-..+++++.- ..--.|-++-.++++|
T Consensus 16 ~d~~G~~vG~vveG--d~k~L~G~~vd~~G~I~d~~G~viGkae~~~~~e 63 (64)
T PF12396_consen 16 VDDDGNVVGRVVEG--DPKKLVGKKVDEDGDILDKDGNVIGKAEPIEEEE 63 (64)
T ss_pred ECCCCCEEEEEecC--CHHHhcCCcCCCCCCEECCCCCEEEEEEeCCccc
Confidence 56667899999999 5666766667665432 2234566666666554
No 43
>PHA03309 transcriptional regulator ICP4; Provisional
Probab=20.34 E-value=1.2e+02 Score=32.69 Aligned_cols=29 Identities=48% Similarity=0.343 Sum_probs=18.4
Q ss_pred eeccCCCCCCccCCCCCCCCCCCCCCCCC
Q 024818 33 IEIPRKSSSFLSNASSSCSSFFSRPLTPV 61 (262)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (262)
+.--|++|++.++.||++|++.+++..-.
T Consensus 1811 isagrssssssssssssssspssrpsrsa 1839 (2033)
T PHA03309 1811 ISAGRSSSSSSSSSSSSSSSPSSRPSRSA 1839 (2033)
T ss_pred eecCcccCcccccccccCCCCCCCCcccC
Confidence 33447777766666666677777766533
Done!