Query 024820
Match_columns 262
No_of_seqs 297 out of 1306
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:39:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01675 plant-AP plant acid 100.0 8.7E-75 1.9E-79 505.4 20.6 220 42-262 10-229 (229)
2 TIGR01680 Veg_Stor_Prot vegeta 100.0 2.4E-70 5.2E-75 484.8 20.3 215 43-260 37-254 (275)
3 PF03767 Acid_phosphat_B: HAD 100.0 1.1E-55 2.5E-60 387.7 3.1 215 42-261 9-228 (229)
4 TIGR01533 lipo_e_P4 5'-nucleot 100.0 9.1E-34 2E-38 253.3 16.2 177 75-260 40-238 (266)
5 COG2503 Predicted secreted aci 100.0 1E-29 2.3E-34 219.7 13.4 165 87-260 52-242 (274)
6 PRK11009 aphA acid phosphatase 99.9 3.5E-23 7.6E-28 182.5 12.2 142 109-259 62-218 (237)
7 TIGR01672 AphA HAD superfamily 99.8 2.3E-19 5.1E-24 158.3 13.6 135 109-254 62-210 (237)
8 COG0637 Predicted phosphatase/ 99.6 1.6E-15 3.4E-20 132.6 11.0 102 150-257 83-188 (221)
9 COG0546 Gph Predicted phosphat 99.6 4.7E-15 1E-19 129.2 12.6 99 152-254 88-188 (220)
10 PLN02770 haloacid dehalogenase 99.6 1E-14 2.2E-19 129.3 13.4 101 151-255 106-208 (248)
11 TIGR01422 phosphonatase phosph 99.6 7.4E-15 1.6E-19 130.0 12.3 100 151-256 97-202 (253)
12 PRK14988 GMP/IMP nucleotidase; 99.6 5.1E-15 1.1E-19 129.4 11.0 102 151-258 91-197 (224)
13 PRK13226 phosphoglycolate phos 99.6 1.3E-14 2.8E-19 127.0 13.5 100 151-254 93-194 (229)
14 PRK13288 pyrophosphatase PpaX; 99.6 8.7E-15 1.9E-19 126.2 11.7 101 151-255 80-182 (214)
15 TIGR03351 PhnX-like phosphonat 99.6 1.3E-14 2.7E-19 125.5 12.6 103 151-256 85-192 (220)
16 PLN02575 haloacid dehalogenase 99.6 1.8E-14 3.9E-19 134.8 13.5 102 151-256 214-317 (381)
17 PLN03243 haloacid dehalogenase 99.6 2.8E-14 6.1E-19 127.7 13.0 100 151-256 107-210 (260)
18 PRK10826 2-deoxyglucose-6-phos 99.6 5.6E-14 1.2E-18 121.9 14.2 101 151-257 90-194 (222)
19 PRK13225 phosphoglycolate phos 99.6 2.6E-14 5.6E-19 128.8 12.4 141 108-256 60-240 (273)
20 PRK11587 putative phosphatase; 99.6 5.7E-14 1.2E-18 121.8 13.1 100 150-256 80-183 (218)
21 TIGR01449 PGP_bact 2-phosphogl 99.6 4.7E-14 1E-18 120.9 12.2 99 151-255 83-185 (213)
22 TIGR01990 bPGM beta-phosphoglu 99.5 4.1E-14 8.8E-19 118.6 11.0 96 152-255 86-185 (185)
23 TIGR02253 CTE7 HAD superfamily 99.5 5.8E-14 1.3E-18 121.1 12.2 101 151-258 92-198 (221)
24 TIGR01428 HAD_type_II 2-haloal 99.5 1.2E-13 2.7E-18 117.5 13.6 102 151-257 90-194 (198)
25 TIGR01454 AHBA_synth_RP 3-amin 99.5 9.6E-14 2.1E-18 118.9 12.4 99 150-254 72-174 (205)
26 PRK13478 phosphonoacetaldehyde 99.5 1.4E-13 3E-18 123.1 12.8 99 151-255 99-203 (267)
27 PHA02530 pseT polynucleotide k 99.5 3E-13 6.5E-18 122.5 14.9 134 107-255 155-296 (300)
28 PRK06698 bifunctional 5'-methy 99.5 6.2E-14 1.4E-18 134.7 10.0 98 151-256 328-428 (459)
29 PRK13223 phosphoglycolate phos 99.5 3.7E-13 8.1E-18 121.0 14.0 99 152-256 100-202 (272)
30 TIGR02009 PGMB-YQAB-SF beta-ph 99.5 3.6E-13 7.7E-18 112.9 11.7 95 151-253 86-184 (185)
31 PRK10725 fructose-1-P/6-phosph 99.5 4.5E-13 9.8E-18 112.8 11.9 99 151-255 86-186 (188)
32 TIGR01656 Histidinol-ppas hist 99.5 1.8E-13 3.9E-18 112.0 8.9 128 111-256 1-146 (147)
33 TIGR01548 HAD-SF-IA-hyp1 haloa 99.5 4.6E-13 1E-17 114.2 11.3 90 153-246 106-195 (197)
34 PLN02940 riboflavin kinase 99.5 4.8E-13 1E-17 125.9 12.4 102 151-256 91-195 (382)
35 PRK13222 phosphoglycolate phos 99.5 1.3E-12 2.8E-17 112.9 14.0 101 151-255 91-193 (226)
36 PRK09449 dUMP phosphatase; Pro 99.5 7.3E-13 1.6E-17 114.8 12.4 97 152-255 94-196 (224)
37 PLN02779 haloacid dehalogenase 99.5 1.3E-12 2.9E-17 118.3 14.0 101 152-257 143-248 (286)
38 TIGR01662 HAD-SF-IIIA HAD-supe 99.4 4.7E-13 1E-17 107.0 9.4 123 111-254 1-130 (132)
39 TIGR01993 Pyr-5-nucltdase pyri 99.4 9.4E-13 2E-17 110.9 10.7 96 151-253 82-183 (184)
40 cd01427 HAD_like Haloacid deha 99.4 5.7E-13 1.2E-17 104.1 8.4 120 112-253 1-138 (139)
41 TIGR01549 HAD-SF-IA-v1 haloaci 99.4 6.9E-13 1.5E-17 108.3 9.0 129 112-246 1-151 (154)
42 TIGR01509 HAD-SF-IA-v3 haloaci 99.4 1.6E-12 3.5E-17 108.2 11.1 97 152-253 84-182 (183)
43 PRK09456 ?-D-glucose-1-phospha 99.4 1.8E-12 3.8E-17 110.9 10.9 103 152-258 83-188 (199)
44 PF13419 HAD_2: Haloacid dehal 99.4 7.6E-13 1.6E-17 108.2 7.7 101 150-254 74-176 (176)
45 TIGR02252 DREG-2 REG-2-like, H 99.4 1.9E-12 4.1E-17 110.5 10.2 94 152-252 104-202 (203)
46 PRK10563 6-phosphogluconate ph 99.4 5.4E-12 1.2E-16 109.2 10.6 97 151-254 86-185 (221)
47 TIGR01689 EcbF-BcbF capsule bi 99.4 5.3E-12 1.1E-16 101.2 9.7 76 110-206 1-88 (126)
48 TIGR02254 YjjG/YfnB HAD superf 99.3 1E-11 2.2E-16 107.0 12.0 96 152-254 96-197 (224)
49 PHA02597 30.2 hypothetical pro 99.3 4.7E-12 1E-16 107.8 9.7 137 110-255 2-174 (197)
50 TIGR02247 HAD-1A3-hyp Epoxide 99.3 5.6E-12 1.2E-16 108.4 9.8 103 151-257 92-198 (211)
51 TIGR01664 DNA-3'-Pase DNA 3'-p 99.3 4.9E-12 1.1E-16 106.0 9.1 127 110-251 13-158 (166)
52 smart00775 LNS2 LNS2 domain. T 99.3 1.5E-11 3.2E-16 102.2 11.9 127 112-254 1-148 (157)
53 TIGR01261 hisB_Nterm histidino 99.3 6.2E-12 1.3E-16 104.9 8.9 127 111-256 2-148 (161)
54 PLN02954 phosphoserine phospha 99.3 4.9E-11 1.1E-15 103.3 13.9 137 109-248 11-188 (224)
55 TIGR00213 GmhB_yaeD D,D-heptos 99.3 9.4E-12 2E-16 104.7 8.9 118 111-251 2-146 (176)
56 PF08235 LNS2: LNS2 (Lipin/Ned 99.3 1.8E-11 4E-16 101.3 9.8 126 112-254 1-148 (157)
57 PRK08942 D,D-heptose 1,7-bisph 99.3 2E-11 4.3E-16 103.1 9.7 128 110-256 3-148 (181)
58 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.3 6.1E-11 1.3E-15 100.4 12.7 105 151-258 78-193 (201)
59 PRK10748 flavin mononucleotide 99.3 2.4E-11 5.2E-16 107.0 10.5 92 152-256 112-209 (238)
60 TIGR00338 serB phosphoserine p 99.3 6.5E-11 1.4E-15 102.2 13.0 139 109-257 13-197 (219)
61 PRK06769 hypothetical protein; 99.3 8.7E-12 1.9E-16 104.9 6.9 125 109-254 3-136 (173)
62 PRK13582 thrH phosphoserine ph 99.3 3E-11 6.4E-16 103.2 9.9 92 150-246 65-161 (205)
63 PLN02919 haloacid dehalogenase 99.3 2.3E-11 5E-16 127.4 11.0 101 153-257 161-264 (1057)
64 TIGR01489 DKMTPPase-SF 2,3-dik 99.2 1.7E-10 3.6E-15 96.6 13.3 99 151-252 70-185 (188)
65 TIGR01685 MDP-1 magnesium-depe 99.2 1.2E-11 2.7E-16 104.4 5.3 139 110-257 2-159 (174)
66 COG3700 AphA Acid phosphatase 99.2 1.3E-10 2.7E-15 97.3 8.9 143 107-259 60-218 (237)
67 PRK09552 mtnX 2-hydroxy-3-keto 99.2 2.5E-10 5.5E-15 99.1 11.0 95 150-249 71-181 (219)
68 COG2179 Predicted hydrolase of 99.1 8.1E-10 1.8E-14 91.6 11.2 109 107-254 25-137 (175)
69 TIGR01670 YrbI-phosphatas 3-de 99.1 1.4E-10 3E-15 95.9 6.5 117 111-256 2-119 (154)
70 KOG2914 Predicted haloacid-hal 99.1 5E-10 1.1E-14 97.9 10.0 146 108-257 8-198 (222)
71 TIGR01681 HAD-SF-IIIC HAD-supe 99.1 2.6E-10 5.6E-15 91.4 7.5 116 111-245 1-124 (128)
72 PLN02811 hydrolase 99.1 6.7E-10 1.4E-14 96.4 9.9 105 151-257 76-186 (220)
73 PRK05446 imidazole glycerol-ph 99.1 9.6E-10 2.1E-14 102.4 11.2 130 109-258 1-150 (354)
74 COG1011 Predicted hydrolase (H 99.1 1.8E-09 4E-14 93.2 11.9 103 151-258 97-202 (229)
75 TIGR02726 phenyl_P_delta pheny 99.1 1.7E-10 3.8E-15 97.0 4.9 118 109-256 6-125 (169)
76 smart00577 CPDc catalytic doma 99.0 2.3E-10 4.9E-15 93.9 4.5 126 109-246 1-132 (148)
77 TIGR01493 HAD-SF-IA-v2 Haloaci 99.0 4.5E-10 9.8E-15 93.5 6.1 84 151-246 88-173 (175)
78 TIGR01668 YqeG_hyp_ppase HAD s 99.0 2.6E-09 5.6E-14 89.6 10.0 111 108-254 23-135 (170)
79 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.0 9.3E-09 2E-13 87.5 12.5 103 152-257 86-200 (202)
80 TIGR02137 HSK-PSP phosphoserin 99.0 8.3E-09 1.8E-13 89.2 12.1 95 151-250 66-166 (203)
81 PF13344 Hydrolase_6: Haloacid 99.0 2.2E-09 4.7E-14 82.8 7.5 58 113-197 1-58 (101)
82 TIGR01488 HAD-SF-IB Haloacid D 98.9 9E-09 2E-13 85.5 11.3 94 150-246 70-175 (177)
83 PRK09484 3-deoxy-D-manno-octul 98.9 8.4E-10 1.8E-14 93.7 4.5 112 109-250 20-134 (183)
84 TIGR03333 salvage_mtnX 2-hydro 98.9 1.3E-08 2.8E-13 88.2 11.6 98 151-252 68-179 (214)
85 TIGR01684 viral_ppase viral ph 98.9 7.3E-09 1.6E-13 93.6 9.5 78 108-212 124-203 (301)
86 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.9 7.1E-09 1.5E-13 91.5 9.1 102 108-244 6-110 (242)
87 TIGR01663 PNK-3'Pase polynucle 98.9 1.7E-08 3.6E-13 98.6 11.4 121 108-246 166-301 (526)
88 PLN02645 phosphoglycolate phos 98.8 8.7E-09 1.9E-13 94.5 8.4 71 108-205 26-96 (311)
89 PRK11133 serB phosphoserine ph 98.8 5.4E-08 1.2E-12 89.8 12.9 98 151-257 179-291 (322)
90 PRK08238 hypothetical protein; 98.7 8.8E-08 1.9E-12 92.8 11.9 134 108-252 8-162 (479)
91 PRK11590 hypothetical protein; 98.7 1.7E-07 3.7E-12 81.0 12.3 103 152-257 94-205 (211)
92 KOG1615 Phosphoserine phosphat 98.7 1.6E-07 3.5E-12 79.8 11.0 141 109-252 15-196 (227)
93 TIGR01686 FkbH FkbH-like domai 98.7 6.1E-08 1.3E-12 89.2 9.3 116 109-247 2-121 (320)
94 TIGR01458 HAD-SF-IIA-hyp3 HAD- 98.7 6.3E-08 1.4E-12 86.5 8.3 64 111-197 2-65 (257)
95 COG0647 NagD Predicted sugar p 98.7 6E-08 1.3E-12 87.2 7.9 103 108-237 6-119 (269)
96 PHA03398 viral phosphatase sup 98.7 9.9E-08 2.2E-12 86.4 9.2 73 108-207 126-199 (303)
97 PF06941 NT5C: 5' nucleotidase 98.7 7.1E-08 1.5E-12 82.2 7.7 88 150-257 70-164 (191)
98 PRK10444 UMP phosphatase; Prov 98.6 1.2E-07 2.5E-12 84.5 8.8 68 111-205 2-69 (248)
99 COG0560 SerB Phosphoserine pho 98.6 4.8E-07 1E-11 78.8 12.1 98 152-252 76-184 (212)
100 TIGR01452 PGP_euk phosphoglyco 98.6 1.5E-07 3.3E-12 84.8 7.3 61 110-197 2-62 (279)
101 TIGR01691 enolase-ppase 2,3-di 98.5 5.7E-07 1.2E-11 78.7 9.6 108 143-255 83-196 (220)
102 TIGR01457 HAD-SF-IIA-hyp2 HAD- 98.5 4.2E-07 9E-12 80.8 7.3 61 111-198 2-62 (249)
103 PF06888 Put_Phosphatase: Puta 98.5 3.3E-06 7.3E-11 74.5 12.6 94 150-246 68-186 (234)
104 PF12710 HAD: haloacid dehalog 98.4 1.1E-06 2.5E-11 73.5 9.0 85 156-244 92-190 (192)
105 TIGR01544 HAD-SF-IE haloacid d 98.4 5.4E-06 1.2E-10 74.9 13.7 101 143-246 111-228 (277)
106 COG0241 HisB Histidinol phosph 98.4 1.6E-06 3.4E-11 73.6 9.3 124 110-255 5-149 (181)
107 PRK01158 phosphoglycolate phos 98.4 9E-07 2E-11 76.7 7.9 59 110-197 3-61 (230)
108 PRK10530 pyridoxal phosphate ( 98.4 8.8E-07 1.9E-11 78.6 7.9 59 110-197 3-61 (272)
109 COG1778 Low specificity phosph 98.4 2.4E-07 5.2E-12 76.3 3.6 109 109-245 7-115 (170)
110 PRK15126 thiamin pyrimidine py 98.4 1.1E-06 2.3E-11 78.6 8.2 60 110-198 2-61 (272)
111 PRK10976 putative hydrolase; P 98.4 1.1E-06 2.3E-11 78.2 7.9 59 110-197 2-60 (266)
112 PRK00192 mannosyl-3-phosphogly 98.4 1.2E-06 2.5E-11 78.6 8.0 60 110-198 4-63 (273)
113 PRK10513 sugar phosphate phosp 98.4 1.9E-06 4E-11 76.7 8.9 58 110-196 3-60 (270)
114 KOG3085 Predicted hydrolase (H 98.3 1.7E-06 3.6E-11 76.4 7.6 102 152-260 112-218 (237)
115 TIGR01487 SPP-like sucrose-pho 98.3 1.7E-06 3.7E-11 74.6 7.6 57 111-196 2-58 (215)
116 TIGR02461 osmo_MPG_phos mannos 98.3 2E-06 4.4E-11 75.3 7.8 56 112-197 1-56 (225)
117 TIGR02463 MPGP_rel mannosyl-3- 98.3 2.1E-06 4.5E-11 74.2 7.7 55 113-196 2-56 (221)
118 TIGR01482 SPP-subfamily Sucros 98.3 1.8E-06 3.8E-11 74.6 7.0 56 113-197 1-56 (225)
119 TIGR01545 YfhB_g-proteo haloac 98.3 1E-05 2.3E-10 70.2 11.6 103 152-257 93-204 (210)
120 PF08282 Hydrolase_3: haloacid 98.3 2.6E-06 5.6E-11 73.5 7.7 56 113-197 1-56 (254)
121 PRK03669 mannosyl-3-phosphogly 98.3 2.9E-06 6.2E-11 76.0 7.9 59 109-196 6-64 (271)
122 COG0561 Cof Predicted hydrolas 98.3 3E-06 6.5E-11 75.3 7.8 59 110-197 3-61 (264)
123 PRK12702 mannosyl-3-phosphogly 98.2 3.8E-06 8.1E-11 76.3 8.1 59 110-197 1-59 (302)
124 TIGR01486 HAD-SF-IIB-MPGP mann 98.2 3.6E-06 7.8E-11 74.6 7.7 56 113-197 2-57 (256)
125 TIGR00099 Cof-subfamily Cof su 98.2 4.1E-06 8.9E-11 74.1 7.9 56 113-197 2-57 (256)
126 TIGR02251 HIF-SF_euk Dullard-l 98.2 3.4E-06 7.5E-11 70.3 6.7 124 110-246 1-129 (162)
127 PTZ00174 phosphomannomutase; P 98.2 6.9E-06 1.5E-10 72.7 8.3 54 109-191 4-57 (247)
128 PF09419 PGP_phosphatase: Mito 98.2 2.1E-05 4.5E-10 66.1 10.7 117 107-257 38-166 (168)
129 TIGR02250 FCP1_euk FCP1-like p 98.2 2.6E-05 5.5E-10 64.8 11.1 143 107-260 3-156 (156)
130 TIGR01460 HAD-SF-IIA Haloacid 98.2 3.9E-06 8.5E-11 73.9 6.5 58 113-197 1-59 (236)
131 PLN02887 hydrolase family prot 98.1 1.2E-05 2.5E-10 79.7 8.6 59 109-196 307-365 (580)
132 PF00702 Hydrolase: haloacid d 98.1 6.4E-06 1.4E-10 69.9 5.6 88 151-246 125-212 (215)
133 KOG2882 p-Nitrophenyl phosphat 98.1 1.4E-05 3.1E-10 72.2 7.8 97 108-231 20-128 (306)
134 TIGR01456 CECR5 HAD-superfamil 98.0 1.2E-05 2.6E-10 74.1 6.8 59 112-197 2-65 (321)
135 PF08645 PNK3P: Polynucleotide 98.0 1.7E-05 3.6E-10 66.1 6.5 110 111-241 1-130 (159)
136 PF12689 Acid_PPase: Acid Phos 97.9 5E-05 1.1E-09 63.9 8.6 137 109-256 2-152 (169)
137 TIGR01484 HAD-SF-IIB HAD-super 97.9 2.8E-05 6.1E-10 66.2 7.3 52 113-192 2-53 (204)
138 KOG3120 Predicted haloacid deh 97.9 0.00012 2.6E-09 63.7 10.9 134 108-244 11-197 (256)
139 TIGR02244 HAD-IG-Ncltidse HAD 97.9 5.4E-05 1.2E-09 70.5 9.5 100 152-254 183-322 (343)
140 PTZ00445 p36-lilke protein; Pr 97.8 9.2E-05 2E-09 64.2 8.6 167 73-258 11-208 (219)
141 PRK14502 bifunctional mannosyl 97.8 6E-05 1.3E-09 75.4 8.3 62 107-197 413-474 (694)
142 TIGR01512 ATPase-IB2_Cd heavy 97.8 5E-05 1.1E-09 74.8 7.2 82 151-246 360-442 (536)
143 TIGR01525 ATPase-IB_hvy heavy 97.8 6.9E-05 1.5E-09 74.0 8.0 82 151-246 382-464 (556)
144 KOG2116 Protein involved in pl 97.8 0.00018 4E-09 70.8 10.6 120 111-246 531-667 (738)
145 PRK10187 trehalose-6-phosphate 97.7 7.4E-05 1.6E-09 67.1 6.6 63 109-195 13-76 (266)
146 TIGR01485 SPP_plant-cyano sucr 97.7 8.4E-05 1.8E-09 65.7 6.8 60 112-197 3-62 (249)
147 KOG3109 Haloacid dehalogenase- 97.7 0.00037 8E-09 60.6 10.4 112 138-254 81-204 (244)
148 TIGR01511 ATPase-IB1_Cu copper 97.7 0.0002 4.2E-09 71.0 9.6 81 151-246 403-483 (562)
149 COG5083 SMP2 Uncharacterized p 97.7 8.6E-05 1.9E-09 70.1 6.6 123 108-246 373-511 (580)
150 PF11019 DUF2608: Protein of u 97.7 0.00012 2.6E-09 65.5 6.9 89 109-197 19-125 (252)
151 PLN02423 phosphomannomutase 97.6 0.00015 3.3E-09 64.3 7.1 45 108-179 4-49 (245)
152 COG4850 Uncharacterized conser 97.6 0.00033 7.2E-09 64.0 9.3 123 112-244 163-293 (373)
153 PF05152 DUF705: Protein of un 97.5 0.00057 1.2E-08 61.6 9.5 73 108-206 120-192 (297)
154 KOG3040 Predicted sugar phosph 97.5 0.00039 8.4E-09 60.1 7.9 100 109-246 6-106 (262)
155 TIGR02471 sucr_syn_bact_C sucr 97.5 0.00014 3E-09 63.6 5.4 55 112-197 1-55 (236)
156 TIGR01522 ATPase-IIA2_Ca golgi 97.5 0.00037 8.1E-09 72.5 8.7 92 151-246 526-634 (884)
157 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.4 6.2E-05 1.3E-09 66.4 1.9 97 154-254 139-240 (242)
158 COG4996 Predicted phosphatase 97.4 0.00072 1.6E-08 54.4 7.3 89 112-207 2-92 (164)
159 PLN03017 trehalose-phosphatase 97.3 0.00067 1.5E-08 63.6 7.5 58 107-189 108-165 (366)
160 PRK11033 zntA zinc/cadmium/mer 97.1 0.002 4.3E-08 66.0 8.8 80 151-246 566-645 (741)
161 COG5663 Uncharacterized conser 97.1 0.0011 2.5E-08 55.3 5.4 129 112-255 8-161 (194)
162 PLN02151 trehalose-phosphatase 97.0 0.0016 3.5E-08 60.8 6.8 60 107-191 95-154 (354)
163 PRK10671 copA copper exporting 97.0 0.0028 6E-08 65.7 8.7 82 151-246 648-729 (834)
164 PRK14501 putative bifunctional 97.0 0.0013 2.9E-08 67.0 6.2 63 108-194 490-553 (726)
165 TIGR01106 ATPase-IIC_X-K sodiu 97.0 0.0029 6.4E-08 66.7 8.7 90 151-244 566-698 (997)
166 TIGR01517 ATPase-IIB_Ca plasma 96.9 0.0033 7.1E-08 66.0 8.8 90 151-244 577-683 (941)
167 COG1877 OtsB Trehalose-6-phosp 96.9 0.0019 4.2E-08 58.1 6.1 61 107-191 15-76 (266)
168 COG4359 Uncharacterized conser 96.9 0.0094 2E-07 50.7 9.8 94 150-247 70-177 (220)
169 PF03031 NIF: NLI interacting 96.9 0.0011 2.4E-08 54.3 3.8 128 111-255 1-130 (159)
170 TIGR01497 kdpB K+-transporting 96.8 0.0062 1.4E-07 61.6 9.5 80 151-244 444-523 (675)
171 TIGR00685 T6PP trehalose-phosp 96.8 0.002 4.4E-08 56.8 5.4 50 109-179 2-52 (244)
172 COG2217 ZntA Cation transport 96.7 0.0046 1E-07 62.8 7.9 80 151-244 535-614 (713)
173 PRK14010 potassium-transportin 96.7 0.0081 1.8E-07 60.8 9.6 80 151-244 439-518 (673)
174 TIGR01458 HAD-SF-IIA-hyp3 HAD- 96.7 0.00066 1.4E-08 60.6 1.3 97 155-255 122-224 (257)
175 TIGR01647 ATPase-IIIA_H plasma 96.7 0.004 8.6E-08 63.9 7.0 89 151-244 440-549 (755)
176 TIGR01452 PGP_euk phosphoglyco 96.7 0.00064 1.4E-08 61.2 1.0 98 153-254 143-246 (279)
177 PLN02205 alpha,alpha-trehalose 96.7 0.0038 8.3E-08 64.8 6.7 59 108-192 594-653 (854)
178 TIGR01524 ATPase-IIIB_Mg magne 96.7 0.0066 1.4E-07 63.2 8.5 89 151-244 513-617 (867)
179 PLN02580 trehalose-phosphatase 96.7 0.0044 9.5E-08 58.6 6.6 61 107-192 116-176 (384)
180 PLN02382 probable sucrose-phos 96.6 0.007 1.5E-07 57.9 7.9 64 108-197 7-70 (413)
181 TIGR01116 ATPase-IIA1_Ca sarco 96.5 0.012 2.6E-07 61.7 9.6 92 151-246 535-647 (917)
182 TIGR01523 ATPase-IID_K-Na pota 96.5 0.0093 2E-07 63.3 8.6 90 151-244 644-760 (1053)
183 PRK10517 magnesium-transportin 96.5 0.0077 1.7E-07 63.0 7.6 88 151-244 548-652 (902)
184 PRK01122 potassium-transportin 96.4 0.012 2.5E-07 59.7 8.4 80 151-244 443-522 (679)
185 TIGR02245 HAD_IIID1 HAD-superf 96.4 0.008 1.7E-07 51.7 6.3 65 107-195 18-83 (195)
186 COG3769 Predicted hydrolase (H 96.4 0.0074 1.6E-07 52.8 5.7 57 110-196 7-63 (274)
187 PRK15122 magnesium-transportin 96.2 0.014 3.1E-07 61.0 7.8 88 151-244 548-652 (903)
188 PF05116 S6PP: Sucrose-6F-phos 96.0 0.017 3.7E-07 51.3 6.3 60 110-198 2-61 (247)
189 PF06189 5-nucleotidase: 5'-nu 95.9 0.026 5.7E-07 50.4 7.0 163 72-255 76-258 (264)
190 COG4087 Soluble P-type ATPase 95.8 0.048 1E-06 44.0 7.3 80 152-244 29-108 (152)
191 PF02358 Trehalose_PPase: Treh 95.6 0.018 3.9E-07 50.4 4.9 48 114-185 1-49 (235)
192 KOG0202 Ca2+ transporting ATPa 95.6 0.058 1.3E-06 55.2 8.8 90 151-244 582-692 (972)
193 KOG0207 Cation transport ATPas 95.3 0.059 1.3E-06 55.5 7.8 80 151-244 721-800 (951)
194 TIGR01657 P-ATPase-V P-type AT 95.3 0.048 1E-06 58.1 7.4 43 151-196 654-696 (1054)
195 PLN03063 alpha,alpha-trehalose 95.3 0.036 7.9E-07 57.3 6.3 66 108-194 505-571 (797)
196 COG4229 Predicted enolase-phos 95.2 0.066 1.4E-06 45.7 6.7 96 151-254 101-203 (229)
197 TIGR01494 ATPase_P-type ATPase 95.2 0.11 2.3E-06 50.7 9.0 78 151-245 345-422 (499)
198 COG0474 MgtA Cation transport 95.2 0.086 1.9E-06 55.4 8.8 90 151-244 545-653 (917)
199 PLN03064 alpha,alpha-trehalose 95.0 0.052 1.1E-06 56.8 6.5 73 108-195 589-662 (934)
200 KOG1618 Predicted phosphatase 95.0 0.11 2.4E-06 47.8 7.9 63 108-197 33-100 (389)
201 KOG2134 Polynucleotide kinase 94.3 0.12 2.6E-06 48.7 6.5 115 107-238 72-200 (422)
202 PF05761 5_nucleotid: 5' nucle 93.8 0.13 2.8E-06 49.8 5.9 51 155-205 185-241 (448)
203 PLN02177 glycerol-3-phosphate 93.1 1.7 3.6E-05 42.8 12.4 36 154-196 111-147 (497)
204 COG3882 FkbH Predicted enzyme 92.5 0.84 1.8E-05 44.4 9.1 119 107-243 219-341 (574)
205 PF13242 Hydrolase_like: HAD-h 92.4 0.15 3.2E-06 36.5 3.2 46 210-256 3-50 (75)
206 PLN02645 phosphoglycolate phos 91.1 0.074 1.6E-06 48.7 0.4 91 161-254 178-274 (311)
207 PRK10530 pyridoxal phosphate ( 88.7 1.2 2.6E-05 39.2 6.2 98 153-256 137-242 (272)
208 PF09949 DUF2183: Uncharacteri 87.9 2.2 4.9E-05 32.7 6.4 73 171-244 1-80 (100)
209 KOG2470 Similar to IMP-GMP spe 87.2 0.79 1.7E-05 42.9 4.1 28 154-181 241-268 (510)
210 TIGR01652 ATPase-Plipid phosph 87.0 1.9 4E-05 46.2 7.4 29 151-179 629-657 (1057)
211 PLN02499 glycerol-3-phosphate 86.9 1.3 2.9E-05 43.3 5.7 33 161-197 101-134 (498)
212 PF10307 DUF2410: Hypothetical 86.9 5 0.00011 34.6 8.7 89 156-245 57-149 (197)
213 KOG3189 Phosphomannomutase [Li 85.9 2 4.3E-05 37.4 5.6 44 109-179 10-53 (252)
214 PF00702 Hydrolase: haloacid d 85.5 0.51 1.1E-05 39.5 1.9 18 111-128 2-19 (215)
215 TIGR01460 HAD-SF-IIA Haloacid 84.4 0.94 2E-05 39.7 3.1 46 209-254 186-233 (236)
216 KOG1605 TFIIF-interacting CTD 83.0 0.19 4E-06 45.3 -1.9 84 107-195 86-173 (262)
217 PLN03190 aminophospholipid tra 82.7 8.5 0.00018 41.8 10.0 29 151-179 724-752 (1178)
218 PF10137 TIR-like: Predicted n 82.0 5.7 0.00012 31.7 6.5 64 171-240 1-64 (125)
219 COG2216 KdpB High-affinity K+ 80.9 7 0.00015 38.7 7.7 79 151-244 445-524 (681)
220 TIGR01487 SPP-like sucrose-pho 80.7 2.9 6.2E-05 35.6 4.7 76 172-257 110-191 (215)
221 PRK00192 mannosyl-3-phosphogly 79.7 4.8 0.0001 35.8 6.0 84 164-256 143-234 (273)
222 TIGR01457 HAD-SF-IIA-hyp2 HAD- 78.6 2.4 5.3E-05 37.4 3.7 48 208-256 175-224 (249)
223 TIGR02463 MPGP_rel mannosyl-3- 78.6 6.3 0.00014 33.6 6.2 26 230-255 196-221 (221)
224 COG5610 Predicted hydrolase (H 77.2 11 0.00024 36.8 7.6 91 153-246 99-192 (635)
225 COG4502 5'(3')-deoxyribonucleo 77.1 6.9 0.00015 32.2 5.5 53 152-205 67-122 (180)
226 TIGR01456 CECR5 HAD-superfamil 77.0 3.1 6.7E-05 38.3 4.0 25 230-254 264-290 (321)
227 KOG0204 Calcium transporting A 76.2 14 0.0003 38.7 8.5 90 151-244 645-753 (1034)
228 PRK10444 UMP phosphatase; Prov 74.1 3.2 6.9E-05 36.8 3.1 47 208-255 171-219 (248)
229 TIGR02468 sucrsPsyn_pln sucros 66.3 22 0.00049 38.1 7.8 45 157-205 788-838 (1050)
230 cd06591 GH31_xylosidase_XylS X 63.4 34 0.00074 31.4 7.7 25 153-177 63-87 (319)
231 TIGR01485 SPP_plant-cyano sucr 59.8 31 0.00068 30.0 6.5 89 167-257 117-212 (249)
232 PF14336 DUF4392: Domain of un 59.5 35 0.00077 31.1 6.9 45 151-197 58-102 (291)
233 cd07043 STAS_anti-anti-sigma_f 59.4 32 0.00068 24.7 5.6 40 154-198 55-94 (99)
234 TIGR02886 spore_II_AA anti-sig 58.7 37 0.0008 25.2 6.0 38 157-199 59-96 (106)
235 PF01740 STAS: STAS domain; I 58.2 7.9 0.00017 29.4 2.2 38 156-198 67-104 (117)
236 PRK13762 tRNA-modifying enzyme 57.8 74 0.0016 29.4 8.9 41 151-195 140-180 (322)
237 PF05822 UMPH-1: Pyrimidine 5' 57.7 19 0.00042 32.1 4.8 56 138-196 75-130 (246)
238 smart00851 MGS MGS-like domain 56.1 24 0.00052 25.8 4.4 32 158-197 2-33 (90)
239 cd06595 GH31_xylosidase_XylS-l 55.6 26 0.00056 31.7 5.4 26 153-178 71-96 (292)
240 cd05014 SIS_Kpsf KpsF-like pro 54.1 18 0.00039 27.8 3.6 28 154-181 59-86 (128)
241 cd05008 SIS_GlmS_GlmD_1 SIS (S 54.0 18 0.00038 27.8 3.6 26 155-180 59-84 (126)
242 cd06598 GH31_transferase_CtsZ 53.6 42 0.0009 30.8 6.5 44 152-195 66-109 (317)
243 PF04007 DUF354: Protein of un 52.5 12 0.00026 34.8 2.8 41 153-197 11-51 (335)
244 PF02254 TrkA_N: TrkA-N domain 52.3 79 0.0017 23.6 7.0 25 157-181 9-33 (116)
245 TIGR00377 ant_ant_sig anti-ant 52.2 47 0.001 24.5 5.6 57 109-197 42-98 (108)
246 cd05013 SIS_RpiR RpiR-like pro 51.8 21 0.00045 27.3 3.7 25 156-180 74-98 (139)
247 PF06437 ISN1: IMP-specific 5' 51.7 1.3E+02 0.0028 28.8 9.3 47 109-179 146-192 (408)
248 PF00578 AhpC-TSA: AhpC/TSA fa 51.6 30 0.00066 26.0 4.5 39 155-196 45-83 (124)
249 PF13701 DDE_Tnp_1_4: Transpos 51.4 1.1E+02 0.0024 29.6 9.3 19 109-127 138-156 (448)
250 PF01380 SIS: SIS domain SIS d 51.2 23 0.00049 27.1 3.8 27 155-181 66-92 (131)
251 COG1184 GCD2 Translation initi 50.7 34 0.00074 31.5 5.3 42 156-197 130-173 (301)
252 COG2344 AT-rich DNA-binding pr 48.5 33 0.00071 29.7 4.5 45 152-197 129-173 (211)
253 cd08198 DHQS-like2 Dehydroquin 48.0 94 0.002 29.4 8.0 88 169-256 30-133 (369)
254 TIGR03127 RuMP_HxlB 6-phospho 47.6 24 0.00052 29.1 3.6 29 153-181 83-111 (179)
255 PF06415 iPGM_N: BPG-independe 47.5 94 0.002 27.3 7.4 90 147-236 5-103 (223)
256 COG0731 Fe-S oxidoreductases [ 47.2 31 0.00067 31.7 4.5 46 151-204 90-136 (296)
257 cd05710 SIS_1 A subgroup of th 47.0 27 0.00059 27.0 3.6 27 155-181 60-86 (120)
258 KOG2469 IMP-GMP specific 5'-nu 46.6 96 0.0021 29.8 7.7 44 161-204 206-249 (424)
259 COG1817 Uncharacterized protei 46.5 16 0.00035 33.9 2.5 48 146-197 4-51 (346)
260 cd00532 MGS-like MGS-like doma 45.9 48 0.001 25.4 4.8 66 155-237 11-77 (112)
261 cd06592 GH31_glucosidase_KIAA1 45.9 71 0.0015 29.0 6.7 25 154-178 68-92 (303)
262 COG0647 NagD Predicted sugar p 45.8 23 0.0005 32.0 3.4 24 231-254 209-234 (269)
263 cd01421 IMPCH Inosine monophos 44.9 40 0.00086 28.9 4.5 35 155-197 10-44 (187)
264 COG2044 Predicted peroxiredoxi 44.7 35 0.00076 27.1 3.8 51 110-179 35-85 (120)
265 cd06416 GH25_Lys1-like Lys-1 i 44.5 50 0.0011 27.8 5.2 67 89-179 67-133 (196)
266 cd07041 STAS_RsbR_RsbS_like Su 44.5 68 0.0015 23.9 5.5 36 157-197 61-96 (109)
267 PF09198 T4-Gluco-transf: Bact 43.9 6.5 0.00014 24.1 -0.3 13 58-70 9-21 (38)
268 cd05006 SIS_GmhA Phosphoheptos 43.7 31 0.00067 28.5 3.7 29 153-181 112-140 (177)
269 TIGR02495 NrdG2 anaerobic ribo 43.4 1.9E+02 0.004 23.8 9.1 38 155-195 76-113 (191)
270 cd05017 SIS_PGI_PMI_1 The memb 43.3 33 0.00072 26.3 3.6 26 154-179 55-80 (119)
271 cd03018 PRX_AhpE_like Peroxire 43.2 62 0.0013 25.3 5.3 40 154-196 47-86 (149)
272 TIGR00441 gmhA phosphoheptose 42.8 33 0.00072 27.8 3.7 28 154-181 91-118 (154)
273 TIGR00236 wecB UDP-N-acetylglu 42.5 56 0.0012 29.9 5.6 85 158-245 16-103 (365)
274 PF04312 DUF460: Protein of un 42.1 29 0.00062 28.3 3.0 53 112-192 45-97 (138)
275 KOG0203 Na+/K+ ATPase, alpha s 41.9 61 0.0013 34.1 6.0 30 151-180 588-617 (1019)
276 PRK13937 phosphoheptose isomer 41.7 34 0.00073 28.8 3.6 28 154-181 118-145 (188)
277 PRK12702 mannosyl-3-phosphogly 41.6 56 0.0012 30.1 5.2 28 231-258 228-255 (302)
278 cd05005 SIS_PHI Hexulose-6-pho 41.1 35 0.00076 28.2 3.6 29 153-181 86-114 (179)
279 cd03017 PRX_BCP Peroxiredoxin 40.9 73 0.0016 24.5 5.3 39 155-196 43-81 (140)
280 cd08197 DOIS 2-deoxy-scyllo-in 40.9 2.3E+02 0.0049 26.5 9.4 90 164-256 17-118 (355)
281 PF02142 MGS: MGS-like domain 40.5 53 0.0011 24.3 4.2 74 157-242 1-74 (95)
282 cd03012 TlpA_like_DipZ_like Tl 39.7 51 0.0011 25.3 4.2 44 154-197 41-87 (126)
283 PRK05301 pyrroloquinoline quin 39.6 2.3E+02 0.0051 26.3 9.3 42 155-197 76-117 (378)
284 cd04795 SIS SIS domain. SIS (S 39.6 39 0.00083 23.7 3.2 22 155-176 60-81 (87)
285 PF03808 Glyco_tran_WecB: Glyc 39.0 2.2E+02 0.0048 23.5 8.7 39 154-193 33-71 (172)
286 COG3603 Uncharacterized conser 38.9 57 0.0012 25.9 4.2 25 155-179 76-101 (128)
287 PF13580 SIS_2: SIS domain; PD 38.7 35 0.00076 27.1 3.1 23 155-177 116-138 (138)
288 PF03345 DDOST_48kD: Oligosacc 38.5 1.3E+02 0.0028 29.2 7.4 73 158-238 14-87 (423)
289 KOG1344 Predicted histone deac 38.1 90 0.0019 28.0 5.7 100 70-195 218-322 (324)
290 cd02072 Glm_B12_BD B12 binding 37.3 2.1E+02 0.0046 22.8 8.2 82 157-242 38-122 (128)
291 cd06539 CIDE_N_A CIDE_N domain 36.7 31 0.00068 25.3 2.3 22 109-130 39-60 (78)
292 KOG3128 Uncharacterized conser 36.7 65 0.0014 29.2 4.7 53 138-193 123-175 (298)
293 smart00266 CAD Domains present 36.0 26 0.00057 25.4 1.7 21 109-129 37-57 (74)
294 TIGR01501 MthylAspMutase methy 35.9 2.3E+02 0.005 22.8 8.3 82 157-242 40-124 (134)
295 TIGR00640 acid_CoA_mut_C methy 35.7 2.2E+02 0.0049 22.6 7.5 77 158-244 42-121 (132)
296 COG0279 GmhA Phosphoheptose is 35.3 49 0.0011 27.9 3.5 28 154-181 121-148 (176)
297 cd06537 CIDE_N_B CIDE_N domain 34.8 33 0.00071 25.3 2.1 22 109-130 38-59 (81)
298 cd06414 GH25_LytC-like The Lyt 34.7 65 0.0014 27.0 4.3 69 87-179 68-136 (191)
299 COG1501 Alpha-glucosidases, fa 34.4 83 0.0018 32.8 5.7 44 152-195 317-360 (772)
300 PRK13938 phosphoheptose isomer 34.4 52 0.0011 28.2 3.7 29 153-181 124-152 (196)
301 PRK07475 hypothetical protein; 34.3 3.2E+02 0.007 24.0 9.7 120 35-196 23-146 (245)
302 cd01423 MGS_CPS_I_III Methylgl 33.8 2.1E+02 0.0046 21.7 6.8 69 155-237 12-80 (116)
303 PRK12314 gamma-glutamyl kinase 33.6 2.4E+02 0.0053 25.1 8.1 79 155-234 33-139 (266)
304 PRK00994 F420-dependent methyl 33.6 82 0.0018 28.2 4.7 51 150-206 68-118 (277)
305 PF03033 Glyco_transf_28: Glyc 33.5 63 0.0014 24.9 3.8 35 157-197 14-48 (139)
306 cd00861 ProRS_anticodon_short 33.5 87 0.0019 22.4 4.4 14 226-239 52-65 (94)
307 smart00481 POLIIIAc DNA polyme 33.5 1.2E+02 0.0027 20.4 4.9 39 158-196 17-56 (67)
308 PRK06203 aroB 3-dehydroquinate 33.4 2.7E+02 0.0058 26.4 8.6 88 169-256 42-145 (389)
309 PRK02261 methylaspartate mutas 33.3 2.5E+02 0.0054 22.4 8.2 81 158-242 43-126 (137)
310 TIGR01482 SPP-subfamily Sucros 33.1 35 0.00077 28.8 2.5 26 231-256 167-192 (225)
311 cd01615 CIDE_N CIDE_N domain, 32.8 36 0.00079 24.9 2.1 23 108-130 38-60 (78)
312 cd06536 CIDE_N_ICAD CIDE_N dom 32.6 38 0.00082 25.0 2.2 22 109-130 41-62 (80)
313 PF09334 tRNA-synt_1g: tRNA sy 32.2 60 0.0013 30.8 4.0 67 158-229 25-112 (391)
314 TIGR03590 PseG pseudaminic aci 31.9 83 0.0018 28.1 4.8 37 157-196 19-55 (279)
315 TIGR03470 HpnH hopanoid biosyn 31.9 3.9E+02 0.0084 24.4 9.3 49 154-205 85-133 (318)
316 TIGR01691 enolase-ppase 2,3-di 31.8 28 0.00061 30.3 1.7 15 111-125 2-16 (220)
317 KOG3040 Predicted sugar phosph 31.7 41 0.0009 29.6 2.6 45 209-254 179-225 (262)
318 PRK10886 DnaA initiator-associ 31.6 61 0.0013 27.7 3.7 27 154-180 121-147 (196)
319 cd06538 CIDE_N_FSP27 CIDE_N do 31.5 34 0.00073 25.2 1.7 21 110-130 39-59 (79)
320 cd06525 GH25_Lyc-like Lyc mura 31.5 67 0.0015 26.8 3.9 61 91-179 66-127 (184)
321 PRK13936 phosphoheptose isomer 31.3 62 0.0013 27.5 3.7 27 154-180 123-149 (197)
322 PF08444 Gly_acyl_tr_C: Aralky 31.2 93 0.002 23.4 4.1 36 158-196 41-76 (89)
323 cd02971 PRX_family Peroxiredox 31.2 1.2E+02 0.0026 23.2 5.1 39 155-196 42-81 (140)
324 TIGR01370 cysRS possible cyste 30.7 1.1E+02 0.0025 28.2 5.5 26 157-182 192-217 (315)
325 PRK00414 gmhA phosphoheptose i 30.7 64 0.0014 27.3 3.6 27 154-180 123-149 (192)
326 PF00070 Pyr_redox: Pyridine n 30.6 1.7E+02 0.0036 20.4 5.4 39 158-196 11-56 (80)
327 TIGR01486 HAD-SF-IIB-MPGP mann 30.3 1.6E+02 0.0035 25.5 6.3 28 229-256 194-221 (256)
328 smart00540 LEM in nuclear memb 30.2 54 0.0012 21.3 2.4 32 159-193 9-40 (44)
329 TIGR02109 PQQ_syn_pqqE coenzym 29.8 1.1E+02 0.0024 28.2 5.3 42 155-197 67-108 (358)
330 TIGR02826 RNR_activ_nrdG3 anae 29.4 1.2E+02 0.0026 24.6 4.9 35 156-192 75-109 (147)
331 KOG1014 17 beta-hydroxysteroid 29.3 2E+02 0.0044 26.6 6.8 37 159-195 63-99 (312)
332 PRK01158 phosphoglycolate phos 29.0 46 0.001 28.2 2.5 26 231-256 175-200 (230)
333 PRK09437 bcp thioredoxin-depen 28.8 1.5E+02 0.0032 23.5 5.3 39 155-196 50-88 (154)
334 PF13478 XdhC_C: XdhC Rossmann 28.8 2.5E+02 0.0055 22.4 6.7 48 157-204 9-63 (136)
335 PF07511 DUF1525: Protein of u 28.6 81 0.0018 24.8 3.6 47 66-116 41-90 (114)
336 cd08181 PPD-like 1,3-propanedi 28.3 4.4E+02 0.0094 24.4 9.1 77 163-244 19-100 (357)
337 TIGR00676 fadh2 5,10-methylene 28.3 4.1E+02 0.0089 23.6 8.6 33 156-189 44-78 (272)
338 COG0337 AroB 3-dehydroquinate 27.9 2.2E+02 0.0047 27.0 6.9 85 169-256 33-128 (360)
339 cd06415 GH25_Cpl1-like Cpl-1 l 27.9 1.2E+02 0.0025 25.7 4.7 67 87-179 65-131 (196)
340 cd08199 EEVS 2-epi-5-epi-valio 27.7 3.6E+02 0.0078 25.1 8.4 86 168-256 25-122 (354)
341 PF00532 Peripla_BP_1: Peripla 27.7 4.1E+02 0.0089 23.4 8.5 22 221-242 110-132 (279)
342 PF01713 Smr: Smr domain; Int 27.6 74 0.0016 22.7 3.0 43 154-197 11-59 (83)
343 cd01994 Alpha_ANH_like_IV This 27.5 1.6E+02 0.0034 25.0 5.5 45 157-201 76-121 (194)
344 PF04244 DPRP: Deoxyribodipyri 27.4 2.3E+02 0.0049 24.8 6.6 49 155-206 48-100 (224)
345 cd06259 YdcF-like YdcF-like. Y 27.2 3.1E+02 0.0066 21.5 7.8 79 160-242 25-108 (150)
346 COG2999 GrxB Glutaredoxin 2 [P 27.2 64 0.0014 27.7 2.9 43 150-196 54-96 (215)
347 PRK02947 hypothetical protein; 27.2 76 0.0017 28.0 3.6 26 155-180 119-144 (246)
348 PRK10658 putative alpha-glucos 27.2 1.7E+02 0.0037 29.9 6.6 43 153-195 322-364 (665)
349 TIGR00696 wecB_tagA_cpsF bacte 27.2 3.7E+02 0.0081 22.5 7.8 37 156-193 35-71 (177)
350 PF13911 AhpC-TSA_2: AhpC/TSA 27.1 2.1E+02 0.0046 21.5 5.7 41 160-205 4-44 (115)
351 PF12694 MoCo_carrier: Putativ 27.0 1.3E+02 0.0029 24.6 4.7 58 152-212 73-130 (145)
352 KOG0391 SNF2 family DNA-depend 26.8 1.9E+02 0.0041 32.1 6.8 88 154-254 1261-1352(1958)
353 PHA03030 hypothetical protein; 26.8 47 0.001 25.7 1.8 19 3-21 2-20 (122)
354 PF04055 Radical_SAM: Radical 26.5 2.9E+02 0.0063 21.0 7.4 40 156-196 60-102 (166)
355 smart00463 SMR Small MutS-rela 26.4 1.2E+02 0.0026 21.4 4.0 28 153-180 13-42 (80)
356 PRK12342 hypothetical protein; 26.3 4.7E+02 0.01 23.3 9.3 22 159-180 41-62 (254)
357 KOG0205 Plasma membrane H+-tra 26.2 1.7E+02 0.0038 30.2 6.1 88 152-244 491-599 (942)
358 PF05690 ThiG: Thiazole biosyn 26.1 80 0.0017 28.2 3.4 83 158-240 51-135 (247)
359 PRK14021 bifunctional shikimat 26.0 4.1E+02 0.0088 26.4 8.8 98 156-256 195-303 (542)
360 TIGR02471 sucr_syn_bact_C sucr 26.0 66 0.0014 27.6 2.9 27 231-257 177-203 (236)
361 COG0143 MetG Methionyl-tRNA sy 25.9 1.3E+02 0.0028 30.2 5.2 25 157-181 30-54 (558)
362 PRK12360 4-hydroxy-3-methylbut 25.9 4E+02 0.0086 24.3 8.0 17 223-240 111-127 (281)
363 PRK11337 DNA-binding transcrip 25.7 83 0.0018 28.1 3.6 28 154-181 199-226 (292)
364 cd06601 GH31_lyase_GLase GLase 25.6 1.9E+02 0.0041 26.9 6.0 25 153-177 61-85 (332)
365 cd06600 GH31_MGAM-like This fa 25.6 1.3E+02 0.0029 27.5 5.0 23 154-176 62-84 (317)
366 PRK07114 keto-hydroxyglutarate 25.4 4.2E+02 0.009 23.2 7.8 46 159-206 6-51 (222)
367 cd08176 LPO Lactadehyde:propan 25.3 4.9E+02 0.011 24.3 8.9 79 160-243 18-101 (377)
368 TIGR01357 aroB 3-dehydroquinat 25.3 4.4E+02 0.0096 24.1 8.5 85 169-256 20-115 (344)
369 PF01993 MTD: methylene-5,6,7, 25.1 1.1E+02 0.0024 27.4 4.1 51 150-206 67-117 (276)
370 cd02072 Glm_B12_BD B12 binding 25.0 1.5E+02 0.0032 23.7 4.5 45 152-196 61-110 (128)
371 PRK11557 putative DNA-binding 25.0 82 0.0018 27.9 3.4 29 153-181 186-214 (278)
372 cd06603 GH31_GANC_GANAB_alpha 24.9 1.2E+02 0.0026 28.0 4.6 25 153-177 61-85 (339)
373 cd08182 HEPD Hydroxyethylphosp 24.8 5E+02 0.011 24.0 8.8 79 162-245 15-95 (367)
374 COG0745 OmpR Response regulato 24.8 2.9E+02 0.0063 24.0 6.8 22 159-180 59-83 (229)
375 cd02071 MM_CoA_mut_B12_BD meth 24.8 1.5E+02 0.0033 22.8 4.6 74 159-242 40-116 (122)
376 PF04413 Glycos_transf_N: 3-De 24.7 1E+02 0.0022 26.0 3.8 21 160-180 109-129 (186)
377 cd02071 MM_CoA_mut_B12_BD meth 24.7 3.3E+02 0.0071 20.9 7.6 15 164-178 22-36 (122)
378 PF08282 Hydrolase_3: haloacid 24.5 67 0.0014 26.9 2.7 38 219-256 190-229 (254)
379 TIGR02244 HAD-IG-Ncltidse HAD 24.3 41 0.0009 31.5 1.4 16 108-123 10-25 (343)
380 COG4464 CapC Capsular polysacc 24.2 1.6E+02 0.0035 26.1 4.9 26 153-178 17-42 (254)
381 PRK15482 transcriptional regul 24.1 93 0.002 27.7 3.7 30 152-181 192-221 (285)
382 cd08183 Fe-ADH2 Iron-containin 24.1 4.5E+02 0.0097 24.5 8.4 76 163-244 16-92 (374)
383 cd06524 GH25_YegX-like YegX is 23.8 1.4E+02 0.003 25.0 4.4 63 91-179 70-133 (194)
384 PF13905 Thioredoxin_8: Thiore 23.7 1.3E+02 0.0029 21.3 3.9 41 154-196 19-60 (95)
385 cd04242 AAK_G5K_ProB AAK_G5K_P 23.3 3.9E+02 0.0084 23.4 7.4 21 157-177 25-45 (251)
386 PF13439 Glyco_transf_4: Glyco 23.3 1E+02 0.0022 23.9 3.4 25 157-181 17-41 (177)
387 cd06604 GH31_glucosidase_II_Ma 23.2 2.1E+02 0.0045 26.4 5.9 25 153-177 61-85 (339)
388 PRK10624 L-1,2-propanediol oxi 23.1 6.1E+02 0.013 23.7 9.1 79 160-243 20-103 (382)
389 cd02970 PRX_like2 Peroxiredoxi 22.8 2E+02 0.0044 22.1 5.0 39 155-196 43-81 (149)
390 TIGR00355 purH phosphoribosyla 22.7 1.2E+02 0.0026 30.0 4.3 35 155-197 10-44 (511)
391 PF08534 Redoxin: Redoxin; In 22.7 1.5E+02 0.0032 23.1 4.2 40 155-197 48-87 (146)
392 cd02875 GH18_chitobiase Chitob 22.6 5.3E+02 0.011 24.0 8.5 77 159-236 67-159 (358)
393 COG0809 QueA S-adenosylmethion 22.5 74 0.0016 29.8 2.6 24 155-178 185-208 (348)
394 TIGR02638 lactal_redase lactal 22.4 6.2E+02 0.014 23.6 9.0 78 161-243 20-102 (379)
395 TIGR00393 kpsF KpsF/GutQ famil 22.4 1E+02 0.0022 26.9 3.5 26 154-179 59-84 (268)
396 TIGR03757 conj_TIGR03757 integ 22.3 1.1E+02 0.0024 24.0 3.2 47 66-116 42-91 (113)
397 PRK08063 enoyl-(acyl carrier p 22.3 1.6E+02 0.0035 24.8 4.7 34 159-192 18-51 (250)
398 KOG0323 TFIIF-interacting CTD 22.3 3.1E+02 0.0068 28.0 7.2 127 80-207 113-254 (635)
399 TIGR00099 Cof-subfamily Cof su 22.1 75 0.0016 27.5 2.6 38 219-256 192-231 (256)
400 PLN02834 3-dehydroquinate synt 22.1 5.2E+02 0.011 24.9 8.5 87 168-256 99-197 (433)
401 PRK08535 translation initiatio 21.8 1.8E+02 0.004 26.6 5.1 26 153-179 156-181 (310)
402 cd08185 Fe-ADH1 Iron-containin 21.7 6.5E+02 0.014 23.4 9.0 78 161-243 17-99 (380)
403 PF02017 CIDE-N: CIDE-N domain 21.7 2E+02 0.0043 21.0 4.3 21 109-129 39-59 (78)
404 PF02698 DUF218: DUF218 domain 21.6 3.4E+02 0.0074 21.3 6.3 70 167-240 35-109 (155)
405 TIGR00815 sulP high affinity s 21.6 3E+02 0.0065 27.3 7.0 36 157-197 514-549 (563)
406 PRK10892 D-arabinose 5-phospha 21.6 1E+02 0.0022 27.9 3.5 28 153-180 105-132 (326)
407 COG2988 Succinylglutamate desu 21.5 6.5E+02 0.014 23.3 8.5 127 46-195 73-206 (324)
408 PF01055 Glyco_hydro_31: Glyco 21.5 2.4E+02 0.0052 26.8 6.1 44 152-195 79-125 (441)
409 PF04123 DUF373: Domain of unk 21.4 1.6E+02 0.0034 27.7 4.6 30 152-181 47-78 (344)
410 PRK11543 gutQ D-arabinose 5-ph 21.3 1.1E+02 0.0024 27.6 3.6 28 153-180 100-127 (321)
411 PRK04531 acetylglutamate kinas 21.2 3.4E+02 0.0073 25.9 7.0 70 93-197 21-90 (398)
412 PRK00881 purH bifunctional pho 21.2 1.4E+02 0.003 29.7 4.4 35 155-197 14-48 (513)
413 KOG4549 Magnesium-dependent ph 21.1 1.7E+02 0.0038 23.7 4.1 82 108-196 3-85 (144)
414 PRK00994 F420-dependent methyl 21.0 6.2E+02 0.013 22.8 8.2 67 168-240 30-98 (277)
415 PRK10976 putative hydrolase; P 20.8 74 0.0016 27.7 2.3 28 219-246 194-223 (266)
416 TIGR00511 ribulose_e2b2 ribose 20.8 2E+02 0.0044 26.3 5.2 25 153-178 151-175 (301)
417 PF03465 eRF1_3: eRF1 domain 3 20.8 2.2E+02 0.0048 21.9 4.7 23 158-180 71-93 (113)
418 TIGR00221 nagA N-acetylglucosa 20.6 3.3E+02 0.0072 25.7 6.8 56 139-197 152-215 (380)
419 TIGR03278 methan_mark_10 putat 20.6 2.1E+02 0.0046 27.4 5.4 44 153-196 86-130 (404)
420 PF00271 Helicase_C: Helicase 20.6 1.5E+02 0.0033 20.2 3.5 33 163-195 1-34 (78)
421 COG0381 WecB UDP-N-acetylgluco 20.5 2.4E+02 0.0052 26.9 5.7 83 160-245 21-109 (383)
422 cd04906 ACT_ThrD-I_1 First of 20.3 1.7E+02 0.0037 21.0 3.8 23 157-179 54-76 (85)
423 cd01013 isochorismatase Isocho 20.3 3.5E+02 0.0077 22.8 6.3 24 153-176 54-77 (203)
424 PRK08335 translation initiatio 20.2 2.2E+02 0.0048 25.8 5.2 19 161-179 152-170 (275)
425 PF00875 DNA_photolyase: DNA p 20.2 4.2E+02 0.0092 21.2 6.6 77 156-240 53-129 (165)
426 cd01453 vWA_transcription_fact 20.2 4.3E+02 0.0094 21.9 6.8 21 159-179 126-146 (183)
427 PF06543 Lac_bphage_repr: Lact 20.2 82 0.0018 20.9 1.8 26 142-167 19-44 (49)
428 cd08195 DHQS Dehydroquinate sy 20.2 6.8E+02 0.015 23.0 8.7 85 169-256 24-119 (345)
429 TIGR03365 Bsubt_queE 7-cyano-7 20.1 96 0.0021 27.1 2.8 24 156-179 87-110 (238)
430 PF03193 DUF258: Protein of un 20.0 1.9E+02 0.004 24.1 4.3 56 159-226 2-57 (161)
No 1
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=100.00 E-value=8.7e-75 Score=505.44 Aligned_cols=220 Identities=51% Similarity=0.933 Sum_probs=213.4
Q ss_pred cCCCCcCcceeEeeeeecCcccccccCcccHHHHHhhhcCCcccccHHHHHHHHHHHHhhcccccCCCCceEEEecCCCc
Q 024820 42 RAGDELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETL 121 (262)
Q Consensus 42 ~~~~~~~c~sw~~~ve~nn~~~~~~vP~~C~~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~~~~~~~~~aiIfDIDgTl 121 (262)
.+.++.||.|||++||+||+++|+|||++|++||++||+|+||++|+++|+++|..|++++.+. +|+++|||||||+|+
T Consensus 10 ~~~~~~~c~swr~~ve~~n~~~~~~vp~~c~~~v~~Y~~~~~Y~~D~~~v~~~a~~y~~~~~~~-~dg~~A~V~DIDET~ 88 (229)
T TIGR01675 10 LSIDYAYCRSWRLGVETNNIRDWDTVPAECKDYVEDYMTSKQYKRDVKRVVDEAYFYAKSLALS-GDGMDAWIFDVDDTL 88 (229)
T ss_pred ccCCcCcchhhhhhhhhccccccccCcHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHhhcc-CCCCcEEEEcccccc
Confidence 4567999999999999999999999999999999999999999999999999999999999888 899999999999999
Q ss_pred cCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCccee
Q 024820 122 LSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKL 201 (262)
Q Consensus 122 ldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~L 201 (262)
|||.||++.++|+++.|+++.|++|+..+++||+|++++++++|+++|++|+|+|||++.+|+.|.+||+++||+.|++|
T Consensus 89 LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~L 168 (229)
T TIGR01675 89 LSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHL 168 (229)
T ss_pred ccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECCCccccccccccccEEEeCCCCCCCC
Q 024820 202 FLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFAKAERSFKLPNPMYYIA 262 (262)
Q Consensus 202 ilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~~g~r~fklPNp~Y~~~ 262 (262)
+||+.++.++++.+||+++|++++++||+|+++|||||+||.|+++|.|+|||||||||||
T Consensus 169 iLR~~~d~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl~G~~~~~RtFKLPNPmYyi~ 229 (229)
T TIGR01675 169 ILRGLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDLLGSPPGRRTFKLPNPMYYVP 229 (229)
T ss_pred eecCCCCCCchHhHHHHHHHHHHHhCCceEEEEECCChHHhcCCCccCceeeCCCCcccCC
Confidence 9998777777888999999999999999999999999999999999999999999999997
No 2
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=100.00 E-value=2.4e-70 Score=484.77 Aligned_cols=215 Identities=44% Similarity=0.807 Sum_probs=203.9
Q ss_pred CCCCcCcceeEeeeeecCcccccccCcccHHHHHhhhcCCcccccHHHHHHHHHHHHhhcccccCCCCceEEEecCCCcc
Q 024820 43 AGDELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLL 122 (262)
Q Consensus 43 ~~~~~~c~sw~~~ve~nn~~~~~~vP~~C~~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~~~~~~~~~aiIfDIDgTll 122 (262)
..++.+|.|||++||+||+++|++||++|++||++||+|+||++|++.|+++|+.|++++.. ++++|||||||||+|
T Consensus 37 ~~~~~~c~swr~~vE~~n~~~w~~vP~~C~~~v~~Y~~ggqY~~D~~~v~~~a~~y~~~~~~---~~~dA~V~DIDET~L 113 (275)
T TIGR01680 37 RDPEVKCASWRLAVEAHNIFGFETIPEECVDATAEYIEGEQYRSDSKTVNQQAYFFARDLEV---HEKDTFLFNIDGTAL 113 (275)
T ss_pred cCCCCcccceeeeeeecccCCcccCcHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCcC---CCCCEEEEECccccc
Confidence 46789999999999999999999999999999999999999999999999999999988765 368999999999999
Q ss_pred CChhHHHHhccCCcCCCHHHHH-HHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCccee
Q 024820 123 SNLPYYAAHGFGSEIFNEDAFD-EWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKL 201 (262)
Q Consensus 123 dn~~y~~~~~~~~~~~~~~~~~-~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~L 201 (262)
||.||++.++||++.|+++.|+ +|+..+++|++||+++|+++++++|++|+|||||+|.+|++|++||+++||+.|++|
T Consensus 114 sN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~L 193 (275)
T TIGR01680 114 SNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKL 193 (275)
T ss_pred cCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCccee
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCC-CCCCchhhhHHHHHhhhhcCccEEEEECCCcccccccccc-ccEEEeCCCCCC
Q 024820 202 FLRGPSD-QGKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFAKA-ERSFKLPNPMYY 260 (262)
Q Consensus 202 ilr~~~~-~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~~g-~r~fklPNp~Y~ 260 (262)
+||+.++ .+++++.||+..|++++++||+|+++|||||+||.|+..| .|+||||||||-
T Consensus 194 iLR~~~D~~~~~av~yKs~~R~~li~eGYrIv~~iGDq~sDl~G~~~g~~RtFKLPNP~~~ 254 (275)
T TIGR01680 194 ILKDPQDNSAENAVEYKTAARAKLIQEGYNIVGIIGDQWNDLKGEHRGAIRSFKLPNPCTT 254 (275)
T ss_pred eecCCCCCccchhHHHHHHHHHHHHHcCceEEEEECCCHHhccCCCccCcceecCCCcccc
Confidence 9998754 5567789999999999999999999999999999999875 799999999774
No 3
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=100.00 E-value=1.1e-55 Score=387.74 Aligned_cols=215 Identities=47% Similarity=0.767 Sum_probs=184.6
Q ss_pred cCCCCcCcceeEeeeeecCcccccccCcccHHHHHhhhcCCcccccHHHHHHHHHHHHhhcccccCCCCceEEEecCCCc
Q 024820 42 RAGDELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETL 121 (262)
Q Consensus 42 ~~~~~~~c~sw~~~ve~nn~~~~~~vP~~C~~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~~~~~~~~~aiIfDIDgTl 121 (262)
......+|.||+++||+|| .+|.+ ++|+.|+.+ |+++||.+|+++++.+|+.|++...+. +++++|||||||||+
T Consensus 9 ~~~~~~~c~s~~~~~e~~~-~~~~~--~~~~~~~~~-~~~~q~~~e~~a~~~~a~~~a~~~~~~-~~~~~avv~DIDeTv 83 (229)
T PF03767_consen 9 LSTAALYCASWRLAVETNN-ANWTV--AECVEYVAD-VTWGQYSAEYKALVDQAYNYAKSRLDE-ADKPPAVVFDIDETV 83 (229)
T ss_dssp ---------TCCSSHHHHH-----H--HHHHHTTHH-HHHHHHEHHHHHHHHHHHHHHHHHHHH-HTSEEEEEEESBTTT
T ss_pred hhHHHhhhhhccchhhhcc-hHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhc-cCCCcEEEEECCccc
Confidence 3457889999999999999 99955 999999999 999999999999999999999988776 689999999999999
Q ss_pred cCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCccee
Q 024820 122 LSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKL 201 (262)
Q Consensus 122 ldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~L 201 (262)
|||.+|+..+.+++..|+++.|++|+..+.++++||+++|+++++++|++|+|||||++.+|++|++||+++||+.|+++
T Consensus 84 Lsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l 163 (229)
T PF03767_consen 84 LSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHL 163 (229)
T ss_dssp EEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCG
T ss_pred ccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchh
Confidence 99999999888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCC-CCCCchhhhHHHHHhhhhcCccEEEEECCCcccccc----ccccccEEEeCCCCCCC
Q 024820 202 FLRGPSD-QGKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLG----FAKAERSFKLPNPMYYI 261 (262)
Q Consensus 202 ilr~~~~-~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g----~~~g~r~fklPNp~Y~~ 261 (262)
+|++..+ ..+.+..||+++|..|++.||+|+++||||++||.+ +..|.|+|+|||||||+
T Consensus 164 ~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy~Ii~~iGD~~~D~~~~~~~~~~~~r~f~lPNp~Yg~ 228 (229)
T PF03767_consen 164 ILRPDKDPSKKSAVEYKSERRKEIEKKGYRIIANIGDQLSDFSGAKTAGARAERWFKLPNPMYGS 228 (229)
T ss_dssp EEEEESSTSS------SHHHHHHHHHTTEEEEEEEESSGGGCHCTHHHHHHHTTEEE-TTSSSSH
T ss_pred ccccccccccccccccchHHHHHHHHcCCcEEEEeCCCHHHhhcccccccccceEEEcCCCCCCC
Confidence 9998775 555677899999999999999999999999999999 55689999999999985
No 4
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=100.00 E-value=9.1e-34 Score=253.33 Aligned_cols=177 Identities=28% Similarity=0.399 Sum_probs=148.8
Q ss_pred HHhhhcCCcccccHHHHHHHHHHHHhhc-ccccCCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCC
Q 024820 75 VQKYMTGEHYLSDSEIVSGYSLKHAKSA-NVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAP 153 (262)
Q Consensus 75 v~~y~~~~~Y~~d~~~v~~~a~~y~~~~-~~~~~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~ 153 (262)
+.-|.+++.|+.....+...|..++... +.. .++++|||||||||+|||+||+..+.+++.+|+++.|++|+....++
T Consensus 40 ~~w~q~S~Ey~al~~q~~n~A~~~~~~~~~~~-~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~ 118 (266)
T TIGR01533 40 VAWMQRSAEYKALYLQAYNLAKMRLDNNLKKV-KDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAK 118 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCC
Confidence 3447788888877766666666665443 333 57899999999999999999998888888899999999999999999
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCc--ceeEeeCCCCCCCCchhhhHHHHHhhhhcCccE
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW--KKLFLRGPSDQGKPATVYKSEKRLELVNEGYRI 231 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~--~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~i 231 (262)
++||+.+++++|+++|++++|+|+|++..++.|.++|+++|++.+ +.++++++. . .|..+|+.+. ++|+|
T Consensus 119 ~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~-~------~K~~rr~~I~-~~y~I 190 (266)
T TIGR01533 119 PVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDK-S------SKESRRQKVQ-KDYEI 190 (266)
T ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCC-C------CcHHHHHHHH-hcCCE
Confidence 999999999999999999999999999999999999999999864 467877532 1 4666776664 48999
Q ss_pred EEEECCCccccccc-------------------cccccEEEeCCCCCC
Q 024820 232 HGSSGDQWSDLLGF-------------------AKAERSFKLPNPMYY 260 (262)
Q Consensus 232 v~~IGDq~sDl~g~-------------------~~g~r~fklPNp~Y~ 260 (262)
+++|||+++||.+. .+|.+.|.||||||.
T Consensus 191 vl~vGD~~~Df~~~~~~~~~~~~r~~~v~~~~~~fG~~~i~lPNp~YG 238 (266)
T TIGR01533 191 VLLFGDNLLDFDDFFYKDKESQDRQALVLQNQEKFGKKFIILPNPMYG 238 (266)
T ss_pred EEEECCCHHHhhhhhccCcchHHHHHHHHHHHHHhCCCeEEecCCCCc
Confidence 99999999999652 159999999999995
No 5
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=99.96 E-value=1e-29 Score=219.65 Aligned_cols=165 Identities=27% Similarity=0.391 Sum_probs=138.9
Q ss_pred cHHHHHHHHHHHHhh-----cccccCCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHH
Q 024820 87 DSEIVSGYSLKHAKS-----ANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTF 161 (262)
Q Consensus 87 d~~~v~~~a~~y~~~-----~~~~~~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalel 161 (262)
+..++..|++.-|+. .++. .++++|||+|||||+|||+||.......+.+|+|++|++|+....+.++||++||
T Consensus 52 E~~AL~~Q~yn~Ak~~~d~~~k~~-k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eF 130 (274)
T COG2503 52 EYQALYLQAYNSAKIALDTQAKKK-KGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEF 130 (274)
T ss_pred HHHHHHHHHhhhHHHHHHhhhccc-cCCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHH
Confidence 456677788777642 3444 6788899999999999999999888888899999999999999999999999999
Q ss_pred HHHHHHCCCeEEEEccCcccc-HHHHHHHHHhcCCCC--cceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECCC
Q 024820 162 YKELKQLGFKIFLLTGRNEFQ-RNTTEKNLLFAGYSD--WKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGDQ 238 (262)
Q Consensus 162 l~~Lk~~GikI~~vTgR~e~~-r~~T~~nL~~~G~~~--~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq 238 (262)
+++.-++|.+|+|+|+|+... ...|++||.+.|++. -.++++..+. .-|+.+|..+ +++|.|++.|||+
T Consensus 131 l~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llkk~~-------k~Ke~R~~~v-~k~~~iVm~vGDN 202 (274)
T COG2503 131 LNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLKKDK-------KSKEVRRQAV-EKDYKIVMLVGDN 202 (274)
T ss_pred HHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEeeCC-------CcHHHHHHHH-hhccceeeEecCc
Confidence 999999999999999999776 899999999999996 3456666321 2455555555 5599999999999
Q ss_pred ccccccc------------------cccccEEEeCCCCCC
Q 024820 239 WSDLLGF------------------AKAERSFKLPNPMYY 260 (262)
Q Consensus 239 ~sDl~g~------------------~~g~r~fklPNp~Y~ 260 (262)
..||... .+|.+++.||||||.
T Consensus 203 l~DF~d~~~k~~~~eR~Alv~~~~~~FGk~~Ii~pN~~YG 242 (274)
T COG2503 203 LDDFGDNAYKKAEAERRALVKQNQKKFGKKFIILPNSMYG 242 (274)
T ss_pred hhhhcchhhhhhhHHHHHHHHHHHHHhCceEEEecCCccC
Confidence 9999652 269999999999995
No 6
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.90 E-value=3.5e-23 Score=182.50 Aligned_cols=142 Identities=22% Similarity=0.238 Sum_probs=105.6
Q ss_pred CCceEEEecCCCccCChhH--HHHhccC--CcCC--CHHHHHHHHHh--cCCCCChHHHHHHHHHHHCCCeEEEEccCcc
Q 024820 109 GKDAWVFDIDETLLSNLPY--YAAHGFG--SEIF--NEDAFDEWVDL--AKAPALPASLTFYKELKQLGFKIFLLTGRNE 180 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y--~~~~~~~--~~~~--~~~~~~~wv~~--~~a~~ipgalell~~Lk~~GikI~~vTgR~e 180 (262)
++.+|+||||||++||+|| +....|+ ...| +++.|+.|.+. ..+.+.||+++++++|+++|++|+|||||++
T Consensus 62 ~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~ 141 (237)
T PRK11009 62 PPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTA 141 (237)
T ss_pred CCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3559999999999999885 3444452 3446 34456666553 3467888899999999999999999999998
Q ss_pred ccHHHHHHHHHh-cCC--CCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECCCcccccccc-ccccE---EE
Q 024820 181 FQRNTTEKNLLF-AGY--SDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFA-KAERS---FK 253 (262)
Q Consensus 181 ~~r~~T~~nL~~-~G~--~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~-~g~r~---fk 253 (262)
..++.|.++|.+ +|+ ..++.+++.++. ..|+ ..+..+++ +.++++|||+++|+++++ +|.++ +.
T Consensus 142 ~k~~~t~~~Llk~~gip~~~~f~vil~gd~-~~K~------~K~~~l~~--~~i~I~IGDs~~Di~aA~~AGi~~I~v~~ 212 (237)
T PRK11009 142 TKTETVSKTLADDFHIPADNMNPVIFAGDK-PGQY------TKTQWLKK--KNIRIFYGDSDNDITAAREAGARGIRILR 212 (237)
T ss_pred cccHHHHHHHHHHcCCCcccceeEEEcCCC-CCCC------CHHHHHHh--cCCeEEEcCCHHHHHHHHHcCCcEEEEec
Confidence 888899999987 999 456677777654 2333 22334444 445789999999999986 56554 55
Q ss_pred eCCCCC
Q 024820 254 LPNPMY 259 (262)
Q Consensus 254 lPNp~Y 259 (262)
-+|++|
T Consensus 213 G~~~~~ 218 (237)
T PRK11009 213 AANSTY 218 (237)
T ss_pred CCCCCC
Confidence 699998
No 7
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.81 E-value=2.3e-19 Score=158.28 Aligned_cols=135 Identities=20% Similarity=0.202 Sum_probs=99.9
Q ss_pred CCceEEEecCCCccCChhHHHHhccCCcCC---------CHHHHHHHHHhcCC--CCChHHHHHHHHHHHCCCeEEEEcc
Q 024820 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIF---------NEDAFDEWVDLAKA--PALPASLTFYKELKQLGFKIFLLTG 177 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~~~~~~~~~---------~~~~~~~wv~~~~a--~~ipgalell~~Lk~~GikI~~vTg 177 (262)
++.+|+|||||||+||.|+. . +|...+ ++..|+.|...... .+.+++.+++++++++|++++++||
T Consensus 62 ~p~aViFDlDgTLlDSs~~~-~--~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTn 138 (237)
T TIGR01672 62 PPIAVSFDIDDTVLFSSPGF-W--RGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTG 138 (237)
T ss_pred CCeEEEEeCCCccccCcHHH-h--CCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeC
Confidence 44499999999999999986 2 222222 34668999887655 4555599999999999999999999
Q ss_pred CccccHHHHHHHHH-hcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCccEEEEECCCcccccccc-ccccEEEe
Q 024820 178 RNEFQRNTTEKNLL-FAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFA-KAERSFKL 254 (262)
Q Consensus 178 R~e~~r~~T~~nL~-~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~-~g~r~fkl 254 (262)
|.+..++.+.++|. .+|++.++.+++.++. ...||.+ +..+++ +.++++|||+.+||.+++ +|.+++.+
T Consensus 139 r~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~------~~~l~~--~~i~i~vGDs~~DI~aAk~AGi~~I~V 210 (237)
T TIGR01672 139 RTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTK------TQWIQD--KNIRIHYGDSDNDITAAKEAGARGIRI 210 (237)
T ss_pred CCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCH------HHHHHh--CCCeEEEeCCHHHHHHHHHCCCCEEEE
Confidence 97654555555555 6999988888887654 3345432 223333 446789999999999986 88888876
No 8
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.63 E-value=1.6e-15 Score=132.59 Aligned_cols=102 Identities=18% Similarity=0.248 Sum_probs=84.4
Q ss_pred cCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchh--hhHHHHHhhhh
Q 024820 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATV--YKSEKRLELVN 226 (262)
Q Consensus 150 ~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~--~Ks~~r~~L~~ 226 (262)
...+++||+.++++.|+++|+++++.|+.+ |..+...|..+|+..+++.++.+++ .++||++. .++..|..+
T Consensus 83 ~~~~~~pGv~~~l~~L~~~~i~~avaS~s~---~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv-- 157 (221)
T COG0637 83 EGLKPIPGVVELLEQLKARGIPLAVASSSP---RRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGV-- 157 (221)
T ss_pred cCCCCCccHHHHHHHHHhcCCcEEEecCCh---HHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCC--
Confidence 457999999999999999999999999999 9999999999999988887777654 67788775 333333222
Q ss_pred cCccEEEEECCCcccccccc-ccccEEEeCCC
Q 024820 227 EGYRIHGSSGDQWSDLLGFA-KAERSFKLPNP 257 (262)
Q Consensus 227 ~g~~iv~~IGDq~sDl~g~~-~g~r~fklPNp 257 (262)
...-|+.|+|+++++++++ +|+++|.+|++
T Consensus 158 -~P~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~ 188 (221)
T COG0637 158 -DPEECVVVEDSPAGIQAAKAAGMRVVGVPAG 188 (221)
T ss_pred -ChHHeEEEecchhHHHHHHHCCCEEEEecCC
Confidence 2335889999999999998 89999999984
No 9
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.62 E-value=4.7e-15 Score=129.17 Aligned_cols=99 Identities=17% Similarity=0.173 Sum_probs=79.6
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCC-CCCCCCchhhhHHHHHhhhhcCcc
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGP-SDQGKPATVYKSEKRLELVNEGYR 230 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~-~~~~Kp~~~~Ks~~r~~L~~~g~~ 230 (262)
..++||+.+++..|+++|++++++|+++ +..+...|+++|+..++..+...+ ....||++........++... ..
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~---~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~-~~ 163 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKP---ERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLD-PE 163 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCc---HHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCC-hh
Confidence 4799999999999999999999999999 888899999999999999888844 367777765544443333322 23
Q ss_pred EEEEECCCcccccccc-ccccEEEe
Q 024820 231 IHGSSGDQWSDLLGFA-KAERSFKL 254 (262)
Q Consensus 231 iv~~IGDq~sDl~g~~-~g~r~fkl 254 (262)
.+++|||+..|+++++ +|..++.+
T Consensus 164 ~~l~VGDs~~Di~aA~~Ag~~~v~v 188 (220)
T COG0546 164 EALMVGDSLNDILAAKAAGVPAVGV 188 (220)
T ss_pred heEEECCCHHHHHHHHHcCCCEEEE
Confidence 6899999999999998 67676655
No 10
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.61 E-value=1e-14 Score=129.32 Aligned_cols=101 Identities=17% Similarity=0.086 Sum_probs=79.8
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGY 229 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~ 229 (262)
..+++||+.++++.|+++|++++++||.+ +..+...|+++|+..|++.++.+++ ..+||.+..-....+.+.. ..
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~---~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~-~~ 181 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAP---RENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKV-SK 181 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCC---HHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCC-Ch
Confidence 47889999999999999999999999998 8888999999999988887777665 5677766432222222211 12
Q ss_pred cEEEEECCCcccccccc-ccccEEEeC
Q 024820 230 RIHGSSGDQWSDLLGFA-KAERSFKLP 255 (262)
Q Consensus 230 ~iv~~IGDq~sDl~g~~-~g~r~fklP 255 (262)
..+++|||+..|+++++ +|.+++.+.
T Consensus 182 ~~~l~vgDs~~Di~aA~~aGi~~i~v~ 208 (248)
T PLN02770 182 DHTFVFEDSVSGIKAGVAAGMPVVGLT 208 (248)
T ss_pred hHEEEEcCCHHHHHHHHHCCCEEEEEe
Confidence 35889999999999998 899998874
No 11
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.60 E-value=7.4e-15 Score=130.01 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=78.7
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcc-eeEeeCCC-CCCCCchhhhHHHHHhhhhcC
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWK-KLFLRGPS-DQGKPATVYKSEKRLELVNEG 228 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~-~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g 228 (262)
..+++||+.++|+.|+++|++++++||++ +..+...|+++|+..++ +.++.+++ ..+||++..- ...+++.|
T Consensus 97 ~~~~~pg~~e~L~~L~~~g~~l~IvT~~~---~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~---~~a~~~l~ 170 (253)
T TIGR01422 97 YSSPIPGVIEVIAYLRARGIKIGSTTGYT---REMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMA---LKNAIELG 170 (253)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEECCCc---HHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHH---HHHHHHcC
Confidence 46899999999999999999999999998 77888889999988764 66666654 4677766422 22222333
Q ss_pred c---cEEEEECCCcccccccc-ccccEEEeCC
Q 024820 229 Y---RIHGSSGDQWSDLLGFA-KAERSFKLPN 256 (262)
Q Consensus 229 ~---~iv~~IGDq~sDl~g~~-~g~r~fklPN 256 (262)
. ..+++|||+++|+++++ +|.+++.++.
T Consensus 171 ~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~ 202 (253)
T TIGR01422 171 VYDVAACVKVGDTVPDIEEGRNAGMWTVGLIL 202 (253)
T ss_pred CCCchheEEECCcHHHHHHHHHCCCeEEEEec
Confidence 2 35899999999999998 8999998864
No 12
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.60 E-value=5.1e-15 Score=129.44 Aligned_cols=102 Identities=20% Similarity=0.124 Sum_probs=77.7
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGY 229 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~ 229 (262)
...++||+.++++.|+++|++++++||.+ +......|+++|+..+++.++.+++ ..+||.+..-... +++.|.
T Consensus 91 ~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~---~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~---~~~~~~ 164 (224)
T PRK14988 91 RAVLREDTVPFLEALKASGKRRILLTNAH---PHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAV---AEHTGL 164 (224)
T ss_pred cCCcCCCHHHHHHHHHhCCCeEEEEeCcC---HHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHH---HHHcCC
Confidence 36889999999999999999999999987 6677777888999877777776554 4678766422222 222233
Q ss_pred --cEEEEECCCcccccccc-ccccE-EEeCCCC
Q 024820 230 --RIHGSSGDQWSDLLGFA-KAERS-FKLPNPM 258 (262)
Q Consensus 230 --~iv~~IGDq~sDl~g~~-~g~r~-fklPNp~ 258 (262)
.-+++|||+.+|+++|+ +|+++ +.++||-
T Consensus 165 ~p~~~l~igDs~~di~aA~~aG~~~~~~v~~~~ 197 (224)
T PRK14988 165 KAERTLFIDDSEPILDAAAQFGIRYCLGVTNPD 197 (224)
T ss_pred ChHHEEEEcCCHHHHHHHHHcCCeEEEEEeCCC
Confidence 35899999999999998 79984 6677764
No 13
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.60 E-value=1.3e-14 Score=127.04 Aligned_cols=100 Identities=13% Similarity=0.065 Sum_probs=77.6
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGY 229 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~ 229 (262)
..+++||+.++++.|+++|++++++||.+ +......|+++|+..+++.++.++. ..+||++..-....+.+.. ..
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~---~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~-~p 168 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKP---EYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGV-AP 168 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCC---HHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCC-Ch
Confidence 46889999999999999999999999998 6677778999999888887777654 4677776433233222321 23
Q ss_pred cEEEEECCCcccccccc-ccccEEEe
Q 024820 230 RIHGSSGDQWSDLLGFA-KAERSFKL 254 (262)
Q Consensus 230 ~iv~~IGDq~sDl~g~~-~g~r~fkl 254 (262)
.-+++|||+.+|+.+++ +|.+++.+
T Consensus 169 ~~~l~IGDs~~Di~aA~~aG~~~i~v 194 (229)
T PRK13226 169 TDCVYVGDDERDILAARAAGMPSVAA 194 (229)
T ss_pred hhEEEeCCCHHHHHHHHHCCCcEEEE
Confidence 45899999999999987 89998765
No 14
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.60 E-value=8.7e-15 Score=126.23 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=77.3
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGY 229 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~ 229 (262)
..+++||+.++++.|+++|++++++||+. +..+...|+.+|+..+++.++..++ ..+||.+..-......+. ...
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~---~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~-~~~ 155 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKM---RDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLG-AKP 155 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcC-CCH
Confidence 46789999999999999999999999998 7788889999999988888887655 456665532222222221 112
Q ss_pred cEEEEECCCcccccccc-ccccEEEeC
Q 024820 230 RIHGSSGDQWSDLLGFA-KAERSFKLP 255 (262)
Q Consensus 230 ~iv~~IGDq~sDl~g~~-~g~r~fklP 255 (262)
.-+++|||+.+|++++. +|.+++.+.
T Consensus 156 ~~~~~iGDs~~Di~aa~~aG~~~i~v~ 182 (214)
T PRK13288 156 EEALMVGDNHHDILAGKNAGTKTAGVA 182 (214)
T ss_pred HHEEEECCCHHHHHHHHHCCCeEEEEc
Confidence 34789999999999997 788887663
No 15
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.59 E-value=1.3e-14 Score=125.47 Aligned_cols=103 Identities=21% Similarity=0.213 Sum_probs=78.1
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCC--CcceeEeeCCC-CCCCCchhhhHHHHHhhhhc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS--DWKKLFLRGPS-DQGKPATVYKSEKRLELVNE 227 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~--~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~ 227 (262)
..+++||+.++++.|+++|++++++||+. +......|+++|+. .+++.++.+++ ...||++..-......+...
T Consensus 85 ~~~l~~G~~~~L~~L~~~g~~~~ivT~~~---~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~ 161 (220)
T TIGR03351 85 PPVALPGAEEAFRSLRSSGIKVALTTGFD---RDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQ 161 (220)
T ss_pred CCccCCCHHHHHHHHHHCCCEEEEEeCCc---hHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCC
Confidence 35899999999999999999999999999 77778889999997 67777777655 45777664322222222211
Q ss_pred CccEEEEECCCcccccccc-ccccE-EEeCC
Q 024820 228 GYRIHGSSGDQWSDLLGFA-KAERS-FKLPN 256 (262)
Q Consensus 228 g~~iv~~IGDq~sDl~g~~-~g~r~-fklPN 256 (262)
....+++|||++.|+.+++ +|.++ +.++.
T Consensus 162 ~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~ 192 (220)
T TIGR03351 162 DVQSVAVAGDTPNDLEAGINAGAGAVVGVLT 192 (220)
T ss_pred ChhHeEEeCCCHHHHHHHHHCCCCeEEEEec
Confidence 1245899999999999997 89998 77653
No 16
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.58 E-value=1.8e-14 Score=134.84 Aligned_cols=102 Identities=14% Similarity=0.036 Sum_probs=81.3
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGY 229 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~ 229 (262)
...++||+.++++.|+++|++++++|+++ +..+...|+++|+..|++.++.+++ ..+||++..-......+. ...
T Consensus 214 ~~~l~pGa~ElL~~Lk~~GiklaIaSn~~---~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lg-l~P 289 (381)
T PLN02575 214 IYRLRTGSQEFVNVLMNYKIPMALVSTRP---RKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLN-FIP 289 (381)
T ss_pred CCCcCcCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcC-CCc
Confidence 46789999999999999999999999999 8899999999999988888887765 457886642222222221 122
Q ss_pred cEEEEECCCcccccccc-ccccEEEeCC
Q 024820 230 RIHGSSGDQWSDLLGFA-KAERSFKLPN 256 (262)
Q Consensus 230 ~iv~~IGDq~sDl~g~~-~g~r~fklPN 256 (262)
.-+++|||+.+|+++++ +|++++.+.+
T Consensus 290 eecl~IGDS~~DIeAAk~AGm~~IgV~~ 317 (381)
T PLN02575 290 ERCIVFGNSNQTVEAAHDARMKCVAVAS 317 (381)
T ss_pred ccEEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 35899999999999998 8999998865
No 17
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.57 E-value=2.8e-14 Score=127.70 Aligned_cols=100 Identities=17% Similarity=0.154 Sum_probs=79.9
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGY 229 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~ 229 (262)
..+++||+.++++.|+++|++++++||++ +..+...|+++|+..+++.++.+++ ..+||++..- ...+++.|.
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~---~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~---~~a~~~l~~ 180 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRP---RRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMF---MYAAERLGF 180 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcC---HHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHH---HHHHHHhCC
Confidence 46789999999999999999999999998 7788889999999888887777765 4578876422 122223333
Q ss_pred c--EEEEECCCcccccccc-ccccEEEeCC
Q 024820 230 R--IHGSSGDQWSDLLGFA-KAERSFKLPN 256 (262)
Q Consensus 230 ~--iv~~IGDq~sDl~g~~-~g~r~fklPN 256 (262)
. -+++|||+.+|+++|+ +|.+++.+.+
T Consensus 181 ~p~~~l~IgDs~~Di~aA~~aG~~~i~v~g 210 (260)
T PLN03243 181 IPERCIVFGNSNSSVEAAHDGCMKCVAVAG 210 (260)
T ss_pred ChHHeEEEcCCHHHHHHHHHcCCEEEEEec
Confidence 3 4889999999999998 7999988864
No 18
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.57 E-value=5.6e-14 Score=121.93 Aligned_cols=101 Identities=19% Similarity=0.163 Sum_probs=81.7
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGY 229 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~ 229 (262)
..+++||+.++++.|+++|++++++||.. +..+...|+++|+..+++.++.++. ..+||++. ..+..+...|.
T Consensus 90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~---~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~---~~~~~~~~~~~ 163 (222)
T PRK10826 90 TRPLLPGVREALALCKAQGLKIGLASASP---LHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPE---VYLNCAAKLGV 163 (222)
T ss_pred CCCCCCCHHHHHHHHHHCCCeEEEEeCCc---HHHHHHHHHhCcchhcccEEEEcccCCCCCCCHH---HHHHHHHHcCC
Confidence 46899999999999999999999999988 7788889999999988887777654 45677653 22333334444
Q ss_pred --cEEEEECCCcccccccc-ccccEEEeCCC
Q 024820 230 --RIHGSSGDQWSDLLGFA-KAERSFKLPNP 257 (262)
Q Consensus 230 --~iv~~IGDq~sDl~g~~-~g~r~fklPNp 257 (262)
..+++|||+.+|+.+++ +|.+++.+|+|
T Consensus 164 ~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~ 194 (222)
T PRK10826 164 DPLTCVALEDSFNGMIAAKAARMRSIVVPAP 194 (222)
T ss_pred CHHHeEEEcCChhhHHHHHHcCCEEEEecCC
Confidence 35899999999999997 89999999876
No 19
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.57 E-value=2.6e-14 Score=128.78 Aligned_cols=141 Identities=18% Similarity=0.190 Sum_probs=98.1
Q ss_pred CCCceEEEecCCCccCChhHHHHh------ccCCc----------------------CCCHHHHH-------HHHH--hc
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAH------GFGSE----------------------IFNEDAFD-------EWVD--LA 150 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~------~~~~~----------------------~~~~~~~~-------~wv~--~~ 150 (262)
+..+++|||+||||+|+.+.+... .+|.. .++.+.+. +... ..
T Consensus 60 ~~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (273)
T PRK13225 60 QTLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRTIVRRAGLSPWQQARLLQRVQRQLGDCLP 139 (273)
T ss_pred hhcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcc
Confidence 457899999999999998755321 11110 01111111 1111 13
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCc-
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGY- 229 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~- 229 (262)
..+++||+.++++.|+++|++++++||.. +..+...|+++|+..+++.+..++....|+. ..+..+++.|.
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~---~~~~~~~L~~~gl~~~F~~vi~~~~~~~k~~-----~~~~~l~~~~~~ 211 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNS---RQNIEAFLQRQGLRSLFSVVQAGTPILSKRR-----ALSQLVAREGWQ 211 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCChhheEEEEecCCCCCCHH-----HHHHHHHHhCcC
Confidence 46789999999999999999999999998 8888999999999888887766544333432 22222333333
Q ss_pred -cEEEEECCCcccccccc-ccccEEEeCC
Q 024820 230 -RIHGSSGDQWSDLLGFA-KAERSFKLPN 256 (262)
Q Consensus 230 -~iv~~IGDq~sDl~g~~-~g~r~fklPN 256 (262)
..+++|||+.+|+.+++ +|.+++.++.
T Consensus 212 p~~~l~IGDs~~Di~aA~~AG~~~I~v~~ 240 (273)
T PRK13225 212 PAAVMYVGDETRDVEAARQVGLIAVAVTW 240 (273)
T ss_pred hhHEEEECCCHHHHHHHHHCCCeEEEEec
Confidence 35899999999999998 8999987753
No 20
>PRK11587 putative phosphatase; Provisional
Probab=99.56 E-value=5.7e-14 Score=121.78 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=73.8
Q ss_pred cCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhh--hHHHHHhhhh
Q 024820 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVY--KSEKRLELVN 226 (262)
Q Consensus 150 ~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~--Ks~~r~~L~~ 226 (262)
...+++||+.++++.|+++|++++++||.+ +..+...|...|+.. +..++..++ ...||++.. +...+..+
T Consensus 80 ~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~---~~~~~~~l~~~~l~~-~~~i~~~~~~~~~KP~p~~~~~~~~~~g~-- 153 (218)
T PRK11587 80 EGITALPGAIALLNHLNKLGIPWAIVTSGS---VPVASARHKAAGLPA-PEVFVTAERVKRGKPEPDAYLLGAQLLGL-- 153 (218)
T ss_pred cCceeCcCHHHHHHHHHHcCCcEEEEcCCC---chHHHHHHHhcCCCC-ccEEEEHHHhcCCCCCcHHHHHHHHHcCC--
Confidence 356889999999999999999999999987 455667788889864 445555433 456776532 22222222
Q ss_pred cCccEEEEECCCcccccccc-ccccEEEeCC
Q 024820 227 EGYRIHGSSGDQWSDLLGFA-KAERSFKLPN 256 (262)
Q Consensus 227 ~g~~iv~~IGDq~sDl~g~~-~g~r~fklPN 256 (262)
....+++|||+..|+++|+ +|.+++.+.+
T Consensus 154 -~p~~~l~igDs~~di~aA~~aG~~~i~v~~ 183 (218)
T PRK11587 154 -APQECVVVEDAPAGVLSGLAAGCHVIAVNA 183 (218)
T ss_pred -CcccEEEEecchhhhHHHHHCCCEEEEECC
Confidence 2345899999999999998 8999888864
No 21
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.55 E-value=4.7e-14 Score=120.93 Aligned_cols=99 Identities=18% Similarity=0.169 Sum_probs=77.2
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGY 229 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~ 229 (262)
..+++||+.++++.|+++|++++++|+.+ +......|+++|+..+++.++.+++ ...||.+..-.. .+++.|.
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~---~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~---~~~~~~~ 156 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKP---TPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLL---AAERLGV 156 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHH---HHHHcCC
Confidence 36789999999999999999999999998 7788899999999887777776654 456776532222 2222233
Q ss_pred --cEEEEECCCcccccccc-ccccEEEeC
Q 024820 230 --RIHGSSGDQWSDLLGFA-KAERSFKLP 255 (262)
Q Consensus 230 --~iv~~IGDq~sDl~g~~-~g~r~fklP 255 (262)
..+++|||+.+|+.+++ +|.+++.+.
T Consensus 157 ~~~~~~~igDs~~d~~aa~~aG~~~i~v~ 185 (213)
T TIGR01449 157 APQQMVYVGDSRVDIQAARAAGCPSVLLT 185 (213)
T ss_pred ChhHeEEeCCCHHHHHHHHHCCCeEEEEc
Confidence 45889999999999987 888888773
No 22
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.55 E-value=4.1e-14 Score=118.60 Aligned_cols=96 Identities=17% Similarity=0.134 Sum_probs=71.6
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCc-
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGY- 229 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~- 229 (262)
.+++||+.++++.|+++|++++++|++.. ....|+++|+..+++.++.+++ ...||.+..-. ..++..|.
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~-----~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~---~~~~~~~~~ 157 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASKN-----APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFL---AAAEGLGVS 157 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCcc-----HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHH---HHHHHcCCC
Confidence 47899999999999999999999998752 1356889999887777776554 45677654221 22222233
Q ss_pred -cEEEEECCCcccccccc-ccccEEEeC
Q 024820 230 -RIHGSSGDQWSDLLGFA-KAERSFKLP 255 (262)
Q Consensus 230 -~iv~~IGDq~sDl~g~~-~g~r~fklP 255 (262)
..+++|||+.+|+++++ +|.+++.++
T Consensus 158 ~~~~v~vgD~~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 158 PSECIGIEDAQAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred HHHeEEEecCHHHHHHHHHcCCEEEecC
Confidence 34888999999999998 799988763
No 23
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.55 E-value=5.8e-14 Score=121.15 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=78.3
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchh-hhHHHHHhhhhcC
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATV-YKSEKRLELVNEG 228 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~-~Ks~~r~~L~~~g 228 (262)
..+++||+.+++++|+++|++++++||.+ +......|+++|+..+++.++.+++ ...||++. |... +++.|
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~---~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~----~~~~~ 164 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGL---PVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAA----LKRLG 164 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCc---hHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHH----HHHcC
Confidence 35889999999999999999999999998 6667778999999887776666544 45777664 3322 22333
Q ss_pred c--cEEEEECCCc-ccccccc-ccccEEEeCCCC
Q 024820 229 Y--RIHGSSGDQW-SDLLGFA-KAERSFKLPNPM 258 (262)
Q Consensus 229 ~--~iv~~IGDq~-sDl~g~~-~g~r~fklPNp~ 258 (262)
. .-+++|||++ +|+.+|+ +|.+++.++.+.
T Consensus 165 ~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~ 198 (221)
T TIGR02253 165 VKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGK 198 (221)
T ss_pred CChhhEEEECCChHHHHHHHHHCCCEEEEECCCC
Confidence 3 3588999998 8999998 899999887543
No 24
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.54 E-value=1.2e-13 Score=117.50 Aligned_cols=102 Identities=19% Similarity=0.124 Sum_probs=78.2
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchh-hhHHHHHhhhhcC
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATV-YKSEKRLELVNEG 228 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~-~Ks~~r~~L~~~g 228 (262)
..+++||+.++++.|+++|++++++||.+ +......|+++|+..+++.++.+++ ...||.+. |.... +.+. ..
T Consensus 90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~---~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~-~~~~-~~ 164 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKERGYRLAILSNGS---PAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLAL-EALG-VP 164 (198)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHH-HHhC-CC
Confidence 46789999999999999999999999988 6677788899999877776776654 46777664 33222 2221 12
Q ss_pred ccEEEEECCCcccccccc-ccccEEEeCCC
Q 024820 229 YRIHGSSGDQWSDLLGFA-KAERSFKLPNP 257 (262)
Q Consensus 229 ~~iv~~IGDq~sDl~g~~-~g~r~fklPNp 257 (262)
...+++|||+..|+.++. +|.+++.+..+
T Consensus 165 p~~~~~vgD~~~Di~~A~~~G~~~i~v~r~ 194 (198)
T TIGR01428 165 PDEVLFVASNPWDLGGAKKFGFKTAWVNRP 194 (198)
T ss_pred hhhEEEEeCCHHHHHHHHHCCCcEEEecCC
Confidence 345789999999999997 89999988543
No 25
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.53 E-value=9.6e-14 Score=118.94 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=76.1
Q ss_pred cCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcC
Q 024820 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEG 228 (262)
Q Consensus 150 ~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g 228 (262)
...+++||+.+++++|+++|++++++||++ +..+...|+++|+..+++.++..++ ..+||.+..- +..+++.|
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~---~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~---~~~~~~~~ 145 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADGVGTAIATGKS---GPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIV---REALRLLD 145 (205)
T ss_pred cccccCCCHHHHHHHHHHCCCeEEEEeCCc---hHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHH---HHHHHHcC
Confidence 357889999999999999999999999998 7778888999999887776666554 3567755322 22222333
Q ss_pred c--cEEEEECCCcccccccc-ccccEEEe
Q 024820 229 Y--RIHGSSGDQWSDLLGFA-KAERSFKL 254 (262)
Q Consensus 229 ~--~iv~~IGDq~sDl~g~~-~g~r~fkl 254 (262)
. ..+++|||+.+|+.+++ +|.+++.+
T Consensus 146 ~~~~~~l~igD~~~Di~aA~~~Gi~~i~~ 174 (205)
T TIGR01454 146 VPPEDAVMVGDAVTDLASARAAGTATVAA 174 (205)
T ss_pred CChhheEEEcCCHHHHHHHHHcCCeEEEE
Confidence 3 35899999999999988 78887765
No 26
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.52 E-value=1.4e-13 Score=123.08 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=75.3
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCc-ceeEeeCCC-CCCCCchhhhHHHHHhhhhcC
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW-KKLFLRGPS-DQGKPATVYKSEKRLELVNEG 228 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~-~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g 228 (262)
...++||+.++++.|+++|++++++||.+ +..+...|+.+|+..+ ++.++.+++ ...||++..- ...+.+.|
T Consensus 99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~---~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~---~~a~~~l~ 172 (267)
T PRK13478 99 YATPIPGVLEVIAALRARGIKIGSTTGYT---REMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMA---LKNAIELG 172 (267)
T ss_pred cCCCCCCHHHHHHHHHHCCCEEEEEcCCc---HHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHH---HHHHHHcC
Confidence 46889999999999999999999999998 7777788888877665 366666554 4667765422 22222333
Q ss_pred c---cEEEEECCCcccccccc-ccccEEEeC
Q 024820 229 Y---RIHGSSGDQWSDLLGFA-KAERSFKLP 255 (262)
Q Consensus 229 ~---~iv~~IGDq~sDl~g~~-~g~r~fklP 255 (262)
. ..+++|||+.+|+.+++ +|.+++.+.
T Consensus 173 ~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~ 203 (267)
T PRK13478 173 VYDVAACVKVDDTVPGIEEGLNAGMWTVGVI 203 (267)
T ss_pred CCCCcceEEEcCcHHHHHHHHHCCCEEEEEc
Confidence 2 45899999999999998 899988875
No 27
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.52 E-value=3e-13 Score=122.47 Aligned_cols=134 Identities=19% Similarity=0.219 Sum_probs=102.0
Q ss_pred CCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHH
Q 024820 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTT 186 (262)
Q Consensus 107 ~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T 186 (262)
..++++++||+|||+.++... .+| +|......+++|++.+++++|+++|++++++|||++..+..+
T Consensus 155 ~~~~~~~~~D~dgtl~~~~~~--------~~~------~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~ 220 (300)
T PHA02530 155 PGLPKAVIFDIDGTLAKMGGR--------SPY------DWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDT 220 (300)
T ss_pred CCCCCEEEEECCCcCcCCCCC--------Ccc------chhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHH
Confidence 445789999999999998431 122 345566789999999999999999999999999999999999
Q ss_pred HHHHHhcCCCC-------cceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECCCcccccccc-ccccEEEeC
Q 024820 187 EKNLLFAGYSD-------WKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFA-KAERSFKLP 255 (262)
Q Consensus 187 ~~nL~~~G~~~-------~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~-~g~r~fklP 255 (262)
.++|...|+.. ...++||.. ..+||++..+....+++....+.++++|||+..|+.++. +|..++.+.
T Consensus 221 l~~l~~~~~~f~~i~~~~~~~~~~~~~-~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~ 296 (300)
T PHA02530 221 VEWLRQTDIWFDDLIGRPPDMHFQREQ-GDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQVA 296 (300)
T ss_pred HHHHHHcCCchhhhhCCcchhhhcccC-CCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEEEec
Confidence 99998887321 012334432 346887776655555554435688999999999999988 799888773
No 28
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.50 E-value=6.2e-14 Score=134.72 Aligned_cols=98 Identities=12% Similarity=0.100 Sum_probs=78.7
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCC--CCCchhhhHHHHHhhhhcC
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQ--GKPATVYKSEKRLELVNEG 228 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~--~Kp~~~~Ks~~r~~L~~~g 228 (262)
..+++||+.++|++|+++|++++++||++ +..+.+.|+++|+..|++.++..++.. +||+. +. ..+++.+
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~---~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~-~~----~al~~l~ 399 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGL---TEYLRAIVSYYDLDQWVTETFSIEQINSLNKSDL-VK----SILNKYD 399 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCc---hHHHHHHHHHCCcHhhcceeEecCCCCCCCCcHH-HH----HHHHhcC
Confidence 46889999999999999999999999998 888889999999988888888776533 45532 22 2222334
Q ss_pred ccEEEEECCCcccccccc-ccccEEEeCC
Q 024820 229 YRIHGSSGDQWSDLLGFA-KAERSFKLPN 256 (262)
Q Consensus 229 ~~iv~~IGDq~sDl~g~~-~g~r~fklPN 256 (262)
...+++|||+.+|+.+++ +|.+++.++.
T Consensus 400 ~~~~v~VGDs~~Di~aAk~AG~~~I~v~~ 428 (459)
T PRK06698 400 IKEAAVVGDRLSDINAAKDNGLIAIGCNF 428 (459)
T ss_pred cceEEEEeCCHHHHHHHHHCCCeEEEEeC
Confidence 567999999999999998 8999988853
No 29
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.50 E-value=3.7e-13 Score=121.04 Aligned_cols=99 Identities=19% Similarity=0.158 Sum_probs=75.7
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCc-
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGY- 229 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~- 229 (262)
.+++||+.++++.|+++|++++++||.+ +......|.++|+..+++.++.++. ...||.+..-.. .+.+.|.
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~---~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~---~~~~~g~~ 173 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKP---ERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLF---VMKMAGVP 173 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCc---HHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHH---HHHHhCCC
Confidence 5689999999999999999999999998 5667788889999887777777654 446665532212 2222233
Q ss_pred -cEEEEECCCcccccccc-ccccEEEeCC
Q 024820 230 -RIHGSSGDQWSDLLGFA-KAERSFKLPN 256 (262)
Q Consensus 230 -~iv~~IGDq~sDl~g~~-~g~r~fklPN 256 (262)
.-+++|||+.+|+++++ +|.+++.+++
T Consensus 174 ~~~~l~IGD~~~Di~aA~~aGi~~i~v~~ 202 (272)
T PRK13223 174 PSQSLFVGDSRSDVLAAKAAGVQCVALSY 202 (272)
T ss_pred hhHEEEECCCHHHHHHHHHCCCeEEEEec
Confidence 35889999999999988 8888888754
No 30
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.48 E-value=3.6e-13 Score=112.87 Aligned_cols=95 Identities=19% Similarity=0.170 Sum_probs=71.3
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGY 229 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~ 229 (262)
..+++||+.++++.|+++|++++++|++ ......|+++|+..+++.++.++. ...||.+..- ...+++.|.
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~-----~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~---~~~~~~~~~ 157 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS-----KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETF---LLAAELLGV 157 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc-----hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHH---HHHHHHcCC
Confidence 4689999999999999999999999998 235678889999887777776554 4566655321 222333333
Q ss_pred --cEEEEECCCcccccccc-ccccEEE
Q 024820 230 --RIHGSSGDQWSDLLGFA-KAERSFK 253 (262)
Q Consensus 230 --~iv~~IGDq~sDl~g~~-~g~r~fk 253 (262)
.-+++|||+..|+.++. +|.+++.
T Consensus 158 ~~~~~v~IgD~~~di~aA~~~G~~~i~ 184 (185)
T TIGR02009 158 SPNECVVFEDALAGVQAARAAGMFAVA 184 (185)
T ss_pred CHHHeEEEeCcHhhHHHHHHCCCeEee
Confidence 34788999999999997 7888764
No 31
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.48 E-value=4.5e-13 Score=112.78 Aligned_cols=99 Identities=12% Similarity=-0.002 Sum_probs=74.8
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGY 229 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~ 229 (262)
..+++|+ .+++..|+++ ++++++||.+ +......|+++|+..+++.++.+++ ...||+++.-....+++.. ..
T Consensus 86 ~~~~~~~-~e~L~~L~~~-~~l~I~T~~~---~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~-~~ 159 (188)
T PRK10725 86 SVEPLPL-IEVVKAWHGR-RPMAVGTGSE---SAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGV-QP 159 (188)
T ss_pred cCCCccH-HHHHHHHHhC-CCEEEEcCCc---hHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCC-CH
Confidence 3567886 6999999876 8999999988 7788889999999988888877655 4678876433232222221 12
Q ss_pred cEEEEECCCcccccccc-ccccEEEeC
Q 024820 230 RIHGSSGDQWSDLLGFA-KAERSFKLP 255 (262)
Q Consensus 230 ~iv~~IGDq~sDl~g~~-~g~r~fklP 255 (262)
.-+++|||+.+|+++|. +|.+++.+.
T Consensus 160 ~~~l~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 160 TQCVVFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred HHeEEEeccHhhHHHHHHCCCEEEeec
Confidence 34788999999999998 899988775
No 32
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.47 E-value=1.8e-13 Score=112.00 Aligned_cols=128 Identities=15% Similarity=0.130 Sum_probs=87.9
Q ss_pred ceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCcccc--------
Q 024820 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQ-------- 182 (262)
Q Consensus 111 ~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~-------- 182 (262)
++++||+||||+++...+ | ...|.+ ..++||+.++++.|+++|++++++||.+...
T Consensus 1 ~~~~~d~dgtl~~~~~~~---------~-~~~~~~------~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~ 64 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSD---------Y-PRSLDD------WQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEA 64 (147)
T ss_pred CeEEEeCCCceeccCCcc---------c-CCCHHH------eEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHH
Confidence 479999999999985421 1 123433 3689999999999999999999999987311
Q ss_pred ----HHHHHHHHHhcCCCCcceeEeeC----CC-CCCCCchhhhHHHHHhhhhcCccEEEEECCCcccccccc-ccccEE
Q 024820 183 ----RNTTEKNLLFAGYSDWKKLFLRG----PS-DQGKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFA-KAERSF 252 (262)
Q Consensus 183 ----r~~T~~nL~~~G~~~~~~Lilr~----~~-~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~-~g~r~f 252 (262)
...+...|+++|+.. +..+... +. ..+||.+..-....+.+. .....+++|||+..|+++|+ +|.+++
T Consensus 65 ~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~-~~~~e~i~IGDs~~Di~~A~~~Gi~~v 142 (147)
T TIGR01656 65 FRAPNGRVLELLRQLGVAV-DGVLFCPHHPADNCSCRKPKPGLILEALKRLG-VDASRSLVVGDRLRDLQAARNAGLAAV 142 (147)
T ss_pred HHHHHHHHHHHHHhCCCce-eEEEECCCCCCCCCCCCCCCHHHHHHHHHHcC-CChHHEEEEcCCHHHHHHHHHCCCCEE
Confidence 245667888999873 2223321 21 235675543323222222 12345899999999999997 899999
Q ss_pred EeCC
Q 024820 253 KLPN 256 (262)
Q Consensus 253 klPN 256 (262)
.+|.
T Consensus 143 ~i~~ 146 (147)
T TIGR01656 143 LLVD 146 (147)
T ss_pred EecC
Confidence 8875
No 33
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.46 E-value=4.6e-13 Score=114.22 Aligned_cols=90 Identities=18% Similarity=0.063 Sum_probs=67.8
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEE
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIH 232 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv 232 (262)
.+.+++.++++.|+++|++++++||++ +..+...|+.+|+..+++.++..++...||.+.......+.+.. ....+
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~---~~~~~~~l~~~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~~-~~~~~ 181 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRP---RKDAAKFLTTHGLEILFPVQIWMEDCPPKPNPEPLILAAKALGV-EACHA 181 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCC---HHHHHHHHHHcCchhhCCEEEeecCCCCCcCHHHHHHHHHHhCc-CcccE
Confidence 455566999999999999999999998 88889999999998888877776653348766432222222221 12358
Q ss_pred EEECCCcccccccc
Q 024820 233 GSSGDQWSDLLGFA 246 (262)
Q Consensus 233 ~~IGDq~sDl~g~~ 246 (262)
++|||+.+|+.+|+
T Consensus 182 i~vGD~~~Di~aA~ 195 (197)
T TIGR01548 182 AMVGDTVDDIITGR 195 (197)
T ss_pred EEEeCCHHHHHHHH
Confidence 89999999999986
No 34
>PLN02940 riboflavin kinase
Probab=99.46 E-value=4.8e-13 Score=125.91 Aligned_cols=102 Identities=19% Similarity=0.225 Sum_probs=78.8
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHH-hcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcC
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLL-FAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEG 228 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~-~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g 228 (262)
...++||+.+++++|+++|++++++||.+ +..+...|. ..|+..+++.++.+++ ..+||++..-....+.+.. .
T Consensus 91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~---~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv-~ 166 (382)
T PLN02940 91 NIKALPGANRLIKHLKSHGVPMALASNSP---RANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNV-E 166 (382)
T ss_pred cCCCCcCHHHHHHHHHHCCCcEEEEeCCc---HHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCC-C
Confidence 46789999999999999999999999998 667777887 6899888888887765 4678766432222222211 2
Q ss_pred ccEEEEECCCcccccccc-ccccEEEeCC
Q 024820 229 YRIHGSSGDQWSDLLGFA-KAERSFKLPN 256 (262)
Q Consensus 229 ~~iv~~IGDq~sDl~g~~-~g~r~fklPN 256 (262)
...+++|||+.+|+++|+ +|.+++.++.
T Consensus 167 p~~~l~VGDs~~Di~aA~~aGi~~I~v~~ 195 (382)
T PLN02940 167 PSNCLVIEDSLPGVMAGKAAGMEVIAVPS 195 (382)
T ss_pred hhHEEEEeCCHHHHHHHHHcCCEEEEECC
Confidence 235888999999999997 8999998875
No 35
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.46 E-value=1.3e-12 Score=112.89 Aligned_cols=101 Identities=17% Similarity=0.111 Sum_probs=75.6
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGY 229 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~ 229 (262)
...++||+.++++.|+++|++++++||.. +......|+++|+..+++.++..+. ...||.+..-....+.+.. ..
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~---~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~-~~ 166 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKP---TPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGL-DP 166 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCC-Ch
Confidence 47799999999999999999999999998 5666788899999887777777654 3456654321122222211 23
Q ss_pred cEEEEECCCcccccccc-ccccEEEeC
Q 024820 230 RIHGSSGDQWSDLLGFA-KAERSFKLP 255 (262)
Q Consensus 230 ~iv~~IGDq~sDl~g~~-~g~r~fklP 255 (262)
..+++|||+.+|+.+++ +|..++.++
T Consensus 167 ~~~i~igD~~~Di~~a~~~g~~~i~v~ 193 (226)
T PRK13222 167 EEMLFVGDSRNDIQAARAAGCPSVGVT 193 (226)
T ss_pred hheEEECCCHHHHHHHHHCCCcEEEEC
Confidence 45889999999999988 788888775
No 36
>PRK09449 dUMP phosphatase; Provisional
Probab=99.46 E-value=7.3e-13 Score=114.75 Aligned_cols=97 Identities=21% Similarity=0.214 Sum_probs=75.4
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCc-
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGY- 229 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~- 229 (262)
.+++||+.++++.|+ +|++++++||.+ +..+...|+++|+..+++.++.+++ ...||++..-... +++.|.
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~---~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~---~~~~~~~ 166 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGF---TELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYA---LEQMGNP 166 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCc---HHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHH---HHHcCCC
Confidence 678999999999999 689999999987 7777888999999887777666554 4678866432222 233332
Q ss_pred --cEEEEECCCc-ccccccc-ccccEEEeC
Q 024820 230 --RIHGSSGDQW-SDLLGFA-KAERSFKLP 255 (262)
Q Consensus 230 --~iv~~IGDq~-sDl~g~~-~g~r~fklP 255 (262)
..+++|||+. +|+.+|+ +|.+++.+.
T Consensus 167 ~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~ 196 (224)
T PRK09449 167 DRSRVLMVGDNLHSDILGGINAGIDTCWLN 196 (224)
T ss_pred CcccEEEEcCCcHHHHHHHHHCCCcEEEEC
Confidence 3589999998 6999997 899988875
No 37
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.45 E-value=1.3e-12 Score=118.31 Aligned_cols=101 Identities=16% Similarity=0.069 Sum_probs=70.9
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcC---CCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhc
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAG---YSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNE 227 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G---~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~ 227 (262)
.+++||+.+++++|+++|++++++||.+ +......|+..+ +..++.++ .+++ ...||.+..-......+..
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~---~~~~~~~l~~~~~~~~~~~~~~v-~~~~~~~~KP~p~~~~~a~~~~~~- 217 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSN---EKAVSKIVNTLLGPERAQGLDVF-AGDDVPKKKPDPDIYNLAAETLGV- 217 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHhccccccCceEEE-eccccCCCCCCHHHHHHHHHHhCc-
Confidence 4899999999999999999999999987 555566666553 22333444 4433 4568876433222222211
Q ss_pred CccEEEEECCCcccccccc-ccccEEEeCCC
Q 024820 228 GYRIHGSSGDQWSDLLGFA-KAERSFKLPNP 257 (262)
Q Consensus 228 g~~iv~~IGDq~sDl~g~~-~g~r~fklPNp 257 (262)
...-+++|||+++|+++++ +|.+++.+++.
T Consensus 218 ~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g 248 (286)
T PLN02779 218 DPSRCVVVEDSVIGLQAAKAAGMRCIVTKSS 248 (286)
T ss_pred ChHHEEEEeCCHHhHHHHHHcCCEEEEEccC
Confidence 1234888999999999998 89999988663
No 38
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.45 E-value=4.7e-13 Score=107.00 Aligned_cols=123 Identities=20% Similarity=0.211 Sum_probs=85.1
Q ss_pred ceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCcccc-----HHH
Q 024820 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQ-----RNT 185 (262)
Q Consensus 111 ~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~-----r~~ 185 (262)
++++||+||||.++.++. ..| ....++|++.+++++|+++|++++++||++... ++.
T Consensus 1 k~~~~D~dgtL~~~~~~~------------~~~------~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~ 62 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYV------------DDE------DERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGR 62 (132)
T ss_pred CEEEEeCCCceecCCCCC------------CCH------HHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHH
Confidence 589999999999753321 011 135789999999999999999999999998433 455
Q ss_pred HHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECC-Ccccccccc-ccccEEEe
Q 024820 186 TEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGD-QWSDLLGFA-KAERSFKL 254 (262)
Q Consensus 186 T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGD-q~sDl~g~~-~g~r~fkl 254 (262)
..+.|+.+|+.. +..+... ...||.+..-......+.......+++||| ...|+.+++ +|.+++.+
T Consensus 63 ~~~~l~~~~l~~-~~~~~~~--~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~ 130 (132)
T TIGR01662 63 VARRLEELGVPI-DVLYACP--HCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAFILV 130 (132)
T ss_pred HHHHHHHCCCCE-EEEEECC--CCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeEEEe
Confidence 677889999974 3333333 345665532222323331112346899999 699999997 78888765
No 39
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.43 E-value=9.4e-13 Score=110.92 Aligned_cols=96 Identities=13% Similarity=-0.009 Sum_probs=71.8
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCC-C----CCCchhhhHHHHHhhh
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSD-Q----GKPATVYKSEKRLELV 225 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~-~----~Kp~~~~Ks~~r~~L~ 225 (262)
..++.||+.++++.|+ .+++++||.+ +......|+++|+..+++.++..++. . .||.+..-....+.+.
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~---~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~ 155 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGD---RAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAG 155 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCC---HHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhC
Confidence 3568999999999997 5799999998 77888999999998888777766543 2 4876643333333332
Q ss_pred hcCccEEEEECCCcccccccc-ccccEEE
Q 024820 226 NEGYRIHGSSGDQWSDLLGFA-KAERSFK 253 (262)
Q Consensus 226 ~~g~~iv~~IGDq~sDl~g~~-~g~r~fk 253 (262)
. ...-+++|||+..|+.+++ +|.+++.
T Consensus 156 ~-~~~~~l~vgD~~~di~aA~~~G~~~i~ 183 (184)
T TIGR01993 156 V-DPERAIFFDDSARNIAAAKALGMKTVL 183 (184)
T ss_pred C-CccceEEEeCCHHHHHHHHHcCCEEee
Confidence 1 2345789999999999988 8888765
No 40
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.42 E-value=5.7e-13 Score=104.10 Aligned_cols=120 Identities=23% Similarity=0.173 Sum_probs=87.3
Q ss_pred eEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHH
Q 024820 112 AWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLL 191 (262)
Q Consensus 112 aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~ 191 (262)
+++||+||||....++... .....+.|++.+++++|+++|++++++||+. +.....+++
T Consensus 1 ~~vfD~D~tl~~~~~~~~~------------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~---~~~~~~~~~ 59 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE------------------IEELELYPGVKEALKELKEKGIKLALATNKS---RREVLELLE 59 (139)
T ss_pred CeEEccCCceEccCccccc------------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCch---HHHHHHHHH
Confidence 4799999999998654321 2357889999999999999999999999999 889999999
Q ss_pred hcCCCCcceeEeeCCC-CCC----------------CCchhhhHHHHHhhhhcCccEEEEECCCccccccccc-cccEEE
Q 024820 192 FAGYSDWKKLFLRGPS-DQG----------------KPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFAK-AERSFK 253 (262)
Q Consensus 192 ~~G~~~~~~Lilr~~~-~~~----------------Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~~-g~r~fk 253 (262)
..|+...++.++...+ ... ||.+..+......+.. .+..+++|||+.+|+..+.. |.+++.
T Consensus 60 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~igD~~~d~~~~~~~g~~~i~ 138 (139)
T cd01427 60 ELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGV-DPEEVLMVGDSLNDIEMAKAAGGLGVA 138 (139)
T ss_pred HcCCchhhhheeccchhhhhcccccccccccccccCCCCHHHHHHHHHHcCC-ChhhEEEeCCCHHHHHHHHHcCCceee
Confidence 9998654444444332 111 4444333333333332 24668999999999999884 877764
No 41
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.42 E-value=6.9e-13 Score=108.31 Aligned_cols=129 Identities=22% Similarity=0.198 Sum_probs=82.2
Q ss_pred eEEEecCCCccCChhHHHHh------ccCC----------cCCC-----HHHHHHHHH-hcCCCCChHHHHHHHHHHHCC
Q 024820 112 AWVFDIDETLLSNLPYYAAH------GFGS----------EIFN-----EDAFDEWVD-LAKAPALPASLTFYKELKQLG 169 (262)
Q Consensus 112 aiIfDIDgTlldn~~y~~~~------~~~~----------~~~~-----~~~~~~wv~-~~~a~~ipgalell~~Lk~~G 169 (262)
+|+||+||||+|+.+.+... .++. .... ...|++... ......+||+.++++.|+++|
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~l~~L~~~g 80 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGEDFQALKALRGLAEELLYRIATSFEELLGYDAEEAYIRGAADLLKRLKEAG 80 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcccHHHHHHHHccChHHHHHHHHHHHHHhCcchhheeccCHHHHHHHHHHCc
Confidence 48999999999997643211 1110 0100 012222221 134567899999999999999
Q ss_pred CeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECCCcccccccc
Q 024820 170 FKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFA 246 (262)
Q Consensus 170 ikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~ 246 (262)
++++++|+++ +......++.+ +..++..++..++..+||.+..-.....++... . -+++|||+..|+.+++
T Consensus 81 ~~~~i~T~~~---~~~~~~~~~~~-l~~~f~~i~~~~~~~~Kp~~~~~~~~~~~~~~~-~-~~l~iGDs~~Di~aa~ 151 (154)
T TIGR01549 81 IKLGIISNGS---LRAQKLLLRKH-LGDYFDLILGSDEFGAKPEPEIFLAALESLGLP-P-EVLHVGDNLNDIEGAR 151 (154)
T ss_pred CeEEEEeCCc---hHHHHHHHHHH-HHhcCcEEEecCCCCCCcCHHHHHHHHHHcCCC-C-CEEEEeCCHHHHHHHH
Confidence 9999999999 66666677765 555566566555444777654322222223221 2 5789999999999886
No 42
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.42 E-value=1.6e-12 Score=108.24 Aligned_cols=97 Identities=16% Similarity=0.072 Sum_probs=71.0
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCcc
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGYR 230 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~~ 230 (262)
.++.||+.++++.|+++|++++++||.+ +.. ...+.+.|+..+++.++.+++ ..+||.+..-....+.+.. ...
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~---~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~-~~~ 158 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSP---RDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGL-KPE 158 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCc---hHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCC-Ccc
Confidence 6889999999999999999999999998 444 444455898877776666543 5677776433233233321 234
Q ss_pred EEEEECCCcccccccc-ccccEEE
Q 024820 231 IHGSSGDQWSDLLGFA-KAERSFK 253 (262)
Q Consensus 231 iv~~IGDq~sDl~g~~-~g~r~fk 253 (262)
-+++|||+..|+.+++ +|.+++.
T Consensus 159 ~~~~vgD~~~di~aA~~~G~~~i~ 182 (183)
T TIGR01509 159 ECLFVDDSPAGIEAAKAAGMHTVL 182 (183)
T ss_pred eEEEEcCCHHHHHHHHHcCCEEEe
Confidence 6889999999999987 7888775
No 43
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.41 E-value=1.8e-12 Score=110.89 Aligned_cols=103 Identities=11% Similarity=-0.012 Sum_probs=74.1
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHh-cCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCc
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF-AGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGY 229 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~-~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~ 229 (262)
.+++||+.++++.|+++|++++++||.+ +.....++.. .|+..+++.++.+++ ..+||++..-....+++. ...
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~---~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~-~~p 158 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTN---RLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEG-FSA 158 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCc---hhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcC-CCh
Confidence 4689999999999999999999999998 4444445544 366665665555544 567887753323222221 123
Q ss_pred cEEEEECCCcccccccc-ccccEEEeCCCC
Q 024820 230 RIHGSSGDQWSDLLGFA-KAERSFKLPNPM 258 (262)
Q Consensus 230 ~iv~~IGDq~sDl~g~~-~g~r~fklPNp~ 258 (262)
..+++|||+..|+.+++ +|.+++.++++.
T Consensus 159 ~~~l~vgD~~~di~aA~~aG~~~i~~~~~~ 188 (199)
T PRK09456 159 ADAVFFDDNADNIEAANALGITSILVTDKQ 188 (199)
T ss_pred hHeEEeCCCHHHHHHHHHcCCEEEEecCCc
Confidence 45899999999999988 899999998763
No 44
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.40 E-value=7.6e-13 Score=108.24 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=77.3
Q ss_pred cCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCC-CCCCCCchhhhHHHHHhhhhcC
Q 024820 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGP-SDQGKPATVYKSEKRLELVNEG 228 (262)
Q Consensus 150 ~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~-~~~~Kp~~~~Ks~~r~~L~~~g 228 (262)
...++.||+.++++.|+++|++++++|+.+ +......|+++|+..+++.++.++ ....||.+..-....+++.- .
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~---~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~-~ 149 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGS---RERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGI-P 149 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSE---HHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTS-S
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCC---cccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCC-C
Confidence 568999999999999999999999999998 778889999999987666555544 35577766433233333321 2
Q ss_pred ccEEEEECCCcccccccc-ccccEEEe
Q 024820 229 YRIHGSSGDQWSDLLGFA-KAERSFKL 254 (262)
Q Consensus 229 ~~iv~~IGDq~sDl~g~~-~g~r~fkl 254 (262)
...+++|||+..|+.++. +|.+++.+
T Consensus 150 p~~~~~vgD~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 150 PEEILFVGDSPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp GGGEEEEESSHHHHHHHHHTTSEEEEE
T ss_pred cceEEEEeCCHHHHHHHHHcCCeEEeC
Confidence 345899999999999998 89888753
No 45
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.39 E-value=1.9e-12 Score=110.51 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=69.8
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCc-
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGY- 229 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~- 229 (262)
..++||+.+++++|+++|++++++||.+ +. ....|+++|+..+++.++.+++ ..+||.+..-.. .+++.|.
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~---~~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~---~~~~~~~~ 176 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFD---SR-LRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQE---ALERAGIS 176 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCc---hh-HHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHH---HHHHcCCC
Confidence 3679999999999999999999999976 33 3567889999877776666544 456776642222 2233343
Q ss_pred -cEEEEECCCc-ccccccc-ccccEE
Q 024820 230 -RIHGSSGDQW-SDLLGFA-KAERSF 252 (262)
Q Consensus 230 -~iv~~IGDq~-sDl~g~~-~g~r~f 252 (262)
.-+++|||+. +|+++|+ +|.+++
T Consensus 177 ~~~~~~IgD~~~~Di~~A~~aG~~~i 202 (203)
T TIGR02252 177 PEEALHIGDSLRNDYQGARAAGWRAL 202 (203)
T ss_pred hhHEEEECCCchHHHHHHHHcCCeee
Confidence 3589999998 8999987 787765
No 46
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.35 E-value=5.4e-12 Score=109.20 Aligned_cols=97 Identities=7% Similarity=0.025 Sum_probs=72.4
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcc-eeEeeCC-CCCCCCchhhhHHHHHhhhhcC
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWK-KLFLRGP-SDQGKPATVYKSEKRLELVNEG 228 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~-~Lilr~~-~~~~Kp~~~~Ks~~r~~L~~~g 228 (262)
..+++||+.++++.| +++++++||.+ +..+...|+++|+..++ +.++.++ ....||.+..-....+.+.- .
T Consensus 86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~---~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~-~ 158 (221)
T PRK10563 86 ELEPIAGANALLESI---TVPMCVVSNGP---VSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNV-N 158 (221)
T ss_pred cCCcCCCHHHHHHHc---CCCEEEEeCCc---HHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCC-C
Confidence 468899999999988 59999999987 77888899999998877 4666653 35677766533233222211 1
Q ss_pred ccEEEEECCCcccccccc-ccccEEEe
Q 024820 229 YRIHGSSGDQWSDLLGFA-KAERSFKL 254 (262)
Q Consensus 229 ~~iv~~IGDq~sDl~g~~-~g~r~fkl 254 (262)
..-+++|||+++|+++|+ +|.+++.+
T Consensus 159 p~~~l~igDs~~di~aA~~aG~~~i~~ 185 (221)
T PRK10563 159 VENCILVDDSSAGAQSGIAAGMEVFYF 185 (221)
T ss_pred HHHeEEEeCcHhhHHHHHHCCCEEEEE
Confidence 234889999999999988 89988766
No 47
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=99.35 E-value=5.3e-12 Score=101.17 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=63.5
Q ss_pred CceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHH-----
Q 024820 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRN----- 184 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~----- 184 (262)
+++|+|||||||+.+.. .+|. ..++.+++.+.+++|+++|++|+++|||+...+.
T Consensus 1 ~K~i~~DiDGTL~~~~~---------~~y~-----------~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~ 60 (126)
T TIGR01689 1 MKRLVMDLDNTITLTEN---------GDYA-----------NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGK 60 (126)
T ss_pred CCEEEEeCCCCcccCCC---------Cccc-----------ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccc
Confidence 36899999999987521 0110 2568899999999999999999999999987766
Q ss_pred -------HHHHHHHhcCCCCcceeEeeCC
Q 024820 185 -------TTEKNLLFAGYSDWKKLFLRGP 206 (262)
Q Consensus 185 -------~T~~nL~~~G~~~~~~Lilr~~ 206 (262)
.|.+||.++|++. ++++|+.+
T Consensus 61 i~~~~~~~t~~wL~k~~ipY-d~l~~~kp 88 (126)
T TIGR01689 61 INIHTLPIIILWLNQHNVPY-DEIYVGKP 88 (126)
T ss_pred cchhhHHHHHHHHHHcCCCC-ceEEeCCC
Confidence 9999999999995 99999974
No 48
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.35 E-value=1e-11 Score=106.98 Aligned_cols=96 Identities=19% Similarity=0.218 Sum_probs=74.0
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhc-Cc
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNE-GY 229 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~-g~ 229 (262)
.+++||+.+++++|+++ ++++++||.. +......|+++|+..+++.++.+.+ ...||.+..-... +++. |.
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~---~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~---~~~~~~~ 168 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGV---RETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYA---LERMPKF 168 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCc---hHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHH---HHHhcCC
Confidence 57899999999999999 9999999998 6677788999999887877776654 4567766422222 2222 33
Q ss_pred --cEEEEECCCc-ccccccc-ccccEEEe
Q 024820 230 --RIHGSSGDQW-SDLLGFA-KAERSFKL 254 (262)
Q Consensus 230 --~iv~~IGDq~-sDl~g~~-~g~r~fkl 254 (262)
..+++|||+. +|++++. +|..++.+
T Consensus 169 ~~~~~v~igD~~~~di~~A~~~G~~~i~~ 197 (224)
T TIGR02254 169 SKEEVLMIGDSLTADIKGGQNAGLDTCWM 197 (224)
T ss_pred CchheEEECCCcHHHHHHHHHCCCcEEEE
Confidence 3589999997 8999987 78888776
No 49
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.35 E-value=4.7e-12 Score=107.81 Aligned_cols=137 Identities=14% Similarity=0.024 Sum_probs=82.9
Q ss_pred CceEEEecCCCccCChh----HHHHhccC---------Cc---------CCCHHH----HHHHHH---hcCCCCChHHHH
Q 024820 110 KDAWVFDIDETLLSNLP----YYAAHGFG---------SE---------IFNEDA----FDEWVD---LAKAPALPASLT 160 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~----y~~~~~~~---------~~---------~~~~~~----~~~wv~---~~~a~~ipgale 160 (262)
+++||||+||||+|... ...+.++. .. ..+.+. +..+.. ....+++||+.+
T Consensus 2 ~k~viFDlDGTLiD~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~e 81 (197)
T PHA02597 2 KPTILTDVDGVLLSWQSGLPYFAQKYNIPTDHILKMIQDERFRDPGELFGCDQELAKKLIEKYNNSDFIRYLSAYDDALD 81 (197)
T ss_pred CcEEEEecCCceEchhhccHHHHHhcCCCHHHHHHHHhHhhhcCHHHHhcccHHHHHHHhhhhhHHHHHHhccCCCCHHH
Confidence 47999999999999655 22222221 00 011111 222221 134679999999
Q ss_pred HHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC----cceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEEC
Q 024820 161 FYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD----WKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSG 236 (262)
Q Consensus 161 ll~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~----~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IG 236 (262)
++++|++++ +++++|+.+.. .....++.+|+.. +++.++..+...+||. .....+.+.|...+++||
T Consensus 82 ~L~~L~~~~-~~~i~Tn~~~~---~~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~-----~~~~a~~~~~~~~~v~vg 152 (197)
T PHA02597 82 VINKLKEDY-DFVAVTALGDS---IDALLNRQFNLNALFPGAFSEVLMCGHDESKEK-----LFIKAKEKYGDRVVCFVD 152 (197)
T ss_pred HHHHHHhcC-CEEEEeCCccc---hhHHHHhhCCHHHhCCCcccEEEEeccCcccHH-----HHHHHHHHhCCCcEEEeC
Confidence 999999975 67888887743 2223334445432 3344544444444542 222223333445688999
Q ss_pred CCcccccccc-c--cccEEEeC
Q 024820 237 DQWSDLLGFA-K--AERSFKLP 255 (262)
Q Consensus 237 Dq~sDl~g~~-~--g~r~fklP 255 (262)
|+.+|+++++ + |.+++.+.
T Consensus 153 Ds~~di~aA~~a~~Gi~~i~~~ 174 (197)
T PHA02597 153 DLAHNLDAAHEALSQLPVIHML 174 (197)
T ss_pred CCHHHHHHHHHHHcCCcEEEec
Confidence 9999999997 6 99988874
No 50
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.34 E-value=5.6e-12 Score=108.35 Aligned_cols=103 Identities=18% Similarity=0.098 Sum_probs=71.4
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGY 229 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~ 229 (262)
..+++||+.++++.|+++|++++++||....... ....+...|+..+++.++.+.. ...||++..-... +.+.|.
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~-~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~---~~~~g~ 167 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHS-AEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLM---LERLGV 167 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccch-hhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHH---HHHcCC
Confidence 4568999999999999999999999998643221 2334555677555665555443 4568776422222 222233
Q ss_pred --cEEEEECCCcccccccc-ccccEEEeCCC
Q 024820 230 --RIHGSSGDQWSDLLGFA-KAERSFKLPNP 257 (262)
Q Consensus 230 --~iv~~IGDq~sDl~g~~-~g~r~fklPNp 257 (262)
..+++|||...|+.+++ +|.+++.+.++
T Consensus 168 ~~~~~l~i~D~~~di~aA~~aG~~~i~v~~~ 198 (211)
T TIGR02247 168 APEECVFLDDLGSNLKPAAALGITTIKVSDE 198 (211)
T ss_pred CHHHeEEEcCCHHHHHHHHHcCCEEEEECCH
Confidence 34788999999999997 89999988654
No 51
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.34 E-value=4.9e-12 Score=106.00 Aligned_cols=127 Identities=19% Similarity=0.079 Sum_probs=81.9
Q ss_pred CceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccH------
Q 024820 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQR------ 183 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r------ 183 (262)
.+.++||+||||+.+.... .+ ..+++.| ..++||+.++++.|+++|++++++||++...|
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~---~~---~~~~~~~--------~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~ 78 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGK---VF---PTSASDW--------RFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAE 78 (166)
T ss_pred CcEEEEeCCCceEecCCCC---cc---cCChHHe--------EEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHH
Confidence 5789999999999853200 00 1123333 24689999999999999999999999875321
Q ss_pred ---HHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhh-hcCccEEEEECCCc--------ccccccc-cccc
Q 024820 184 ---NTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELV-NEGYRIHGSSGDQW--------SDLLGFA-KAER 250 (262)
Q Consensus 184 ---~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~-~~g~~iv~~IGDq~--------sDl~g~~-~g~r 250 (262)
..+...|+++|++. +.++.......+||.+..-......+. ......+++|||+. +|+++|+ +|.+
T Consensus 79 ~~~~~i~~~l~~~gl~~-~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~ 157 (166)
T TIGR01664 79 SFKNKIEAFLEKLKVPI-QVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLE 157 (166)
T ss_pred HHHHHHHHHHHHcCCCE-EEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCC
Confidence 24677899999964 333333333456775432212222221 01234689999996 6999987 6765
Q ss_pred E
Q 024820 251 S 251 (262)
Q Consensus 251 ~ 251 (262)
+
T Consensus 158 ~ 158 (166)
T TIGR01664 158 F 158 (166)
T ss_pred c
Confidence 4
No 52
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=99.34 E-value=1.5e-11 Score=102.24 Aligned_cols=127 Identities=20% Similarity=0.303 Sum_probs=88.1
Q ss_pred eEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHH
Q 024820 112 AWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLL 191 (262)
Q Consensus 112 aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~ 191 (262)
.|++||||||+++... |. ..+ ..++....|++.+++++++++|++++|+|||+..+...|.++|.
T Consensus 1 iVisDIDGTL~~sd~~------~~-~~~--------~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~ 65 (157)
T smart00775 1 IVISDIDGTITKSDVL------GH-VVP--------IIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLS 65 (157)
T ss_pred CEEEecCCCCcccccc------cc-ccc--------ccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHH
Confidence 4899999999987421 00 000 01223557999999999999999999999999998889999999
Q ss_pred h-----cCCCCcceeEeeCCCCC--------CCCchhhhHHHHHhhhh----cCccEEEEECCCcccccccc----cccc
Q 024820 192 F-----AGYSDWKKLFLRGPSDQ--------GKPATVYKSEKRLELVN----EGYRIHGSSGDQWSDLLGFA----KAER 250 (262)
Q Consensus 192 ~-----~G~~~~~~Lilr~~~~~--------~Kp~~~~Ks~~r~~L~~----~g~~iv~~IGDq~sDl~g~~----~g~r 250 (262)
+ ++++. ..+++++...- .+....+|.+..+.|.+ .+...++.+||..+|+..-. .-.|
T Consensus 66 ~~~~~~~~lp~-g~li~~~g~~~~~~~~e~i~~~~~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~~~~ 144 (157)
T smart00775 66 QIKQDGHNLPH-GPVLLSPDRLFAALHREVISKKPEVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIPPSR 144 (157)
T ss_pred HhhhccccCCC-ceEEEcCCcchhhhhcccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCChhh
Confidence 8 45764 35677664321 11112467666666665 36678888999999998754 2345
Q ss_pred EEEe
Q 024820 251 SFKL 254 (262)
Q Consensus 251 ~fkl 254 (262)
+|.+
T Consensus 145 i~~i 148 (157)
T smart00775 145 IFTI 148 (157)
T ss_pred EEEE
Confidence 5554
No 53
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.32 E-value=6.2e-12 Score=104.91 Aligned_cols=127 Identities=18% Similarity=0.179 Sum_probs=86.8
Q ss_pred ceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccc---------
Q 024820 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEF--------- 181 (262)
Q Consensus 111 ~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~--------- 181 (262)
++++||.||||+.+.+.. |.. .+ ....+++||+.+++++|+++|++++++||.+..
T Consensus 2 ~~~~~d~dg~l~~~~~~~---------~~~-~~-----~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~ 66 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSD---------FQV-DA-----LEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQAD 66 (161)
T ss_pred CEEEEeCCCCccccCCCc---------ccc-CC-----HHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHH
Confidence 689999999999864310 100 00 113578999999999999999999999997421
Q ss_pred ---cHHHHHHHHHhcCCCCcceeEee-----CCCCCCCCchhhhHHHHHhhhhcC--ccEEEEECCCcccccccc-cccc
Q 024820 182 ---QRNTTEKNLLFAGYSDWKKLFLR-----GPSDQGKPATVYKSEKRLELVNEG--YRIHGSSGDQWSDLLGFA-KAER 250 (262)
Q Consensus 182 ---~r~~T~~nL~~~G~~~~~~Lilr-----~~~~~~Kp~~~~Ks~~r~~L~~~g--~~iv~~IGDq~sDl~g~~-~g~r 250 (262)
.+....+.|+++|+. ++..++. .+....||.+..-... ++..| ...+++|||+++|+.+++ +|..
T Consensus 67 ~~~~~~~~~~~l~~~gl~-fd~ii~~~~~~~~~~~~~KP~~~~~~~~---~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~ 142 (161)
T TIGR01261 67 FDGPHNLMLQIFRSQGII-FDDVLICPHFPDDNCDCRKPKIKLLEPY---LKKNLIDKARSYVIGDRETDMQLAENLGIR 142 (161)
T ss_pred HHHHHHHHHHHHHHCCCc-eeEEEECCCCCCCCCCCCCCCHHHHHHH---HHHcCCCHHHeEEEeCCHHHHHHHHHCCCe
Confidence 244566778999997 4556655 2223567755322122 22223 335899999999999997 8888
Q ss_pred EEEeCC
Q 024820 251 SFKLPN 256 (262)
Q Consensus 251 ~fklPN 256 (262)
++.+..
T Consensus 143 ~i~~~~ 148 (161)
T TIGR01261 143 GIQYDE 148 (161)
T ss_pred EEEECh
Confidence 887753
No 54
>PLN02954 phosphoserine phosphatase
Probab=99.30 E-value=4.9e-11 Score=103.28 Aligned_cols=137 Identities=18% Similarity=0.204 Sum_probs=85.0
Q ss_pred CCceEEEecCCCccCChhHHHHh-ccCC---------------cCCC-------------HHHHHHHHHhcCCCCChHHH
Q 024820 109 GKDAWVFDIDETLLSNLPYYAAH-GFGS---------------EIFN-------------EDAFDEWVDLAKAPALPASL 159 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~~-~~~~---------------~~~~-------------~~~~~~wv~~~~a~~ipgal 159 (262)
.+++||||+||||+++.....-. .+|. ..+. .+.+.++.......+.||+.
T Consensus 11 ~~k~viFDfDGTL~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pg~~ 90 (224)
T PLN02954 11 SADAVCFDVDSTVCVDEGIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKPSLSQVEEFLEKRPPRLSPGIP 90 (224)
T ss_pred cCCEEEEeCCCcccchHHHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHccCCCCccHH
Confidence 47899999999999975532111 1111 0110 12233343333456899999
Q ss_pred HHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC--cce--eEeeCC-------CCCCCCchhhhH-HHHHhhhhc
Q 024820 160 TFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD--WKK--LFLRGP-------SDQGKPATVYKS-EKRLELVNE 227 (262)
Q Consensus 160 ell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~--~~~--Lilr~~-------~~~~Kp~~~~Ks-~~r~~L~~~ 227 (262)
++++.|+++|++++++|+.. +..+...|+.+|++. ++. +.+..+ ..........|. ..++.+...
T Consensus 91 e~l~~l~~~g~~~~IvS~~~---~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~~~~~ 167 (224)
T PLN02954 91 ELVKKLRARGTDVYLVSGGF---RQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHIKKKH 167 (224)
T ss_pred HHHHHHHHCCCEEEEECCCc---HHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHHHHHc
Confidence 99999999999999999999 778888899999973 221 112111 000000011232 223333344
Q ss_pred CccEEEEECCCcccccccccc
Q 024820 228 GYRIHGSSGDQWSDLLGFAKA 248 (262)
Q Consensus 228 g~~iv~~IGDq~sDl~g~~~g 248 (262)
|..-+++|||+.+|+.++.+|
T Consensus 168 ~~~~~i~iGDs~~Di~aa~~~ 188 (224)
T PLN02954 168 GYKTMVMIGDGATDLEARKPG 188 (224)
T ss_pred CCCceEEEeCCHHHHHhhhcC
Confidence 666788999999999998753
No 55
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.30 E-value=9.4e-12 Score=104.70 Aligned_cols=118 Identities=15% Similarity=0.165 Sum_probs=79.5
Q ss_pred ceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccc-----c---
Q 024820 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEF-----Q--- 182 (262)
Q Consensus 111 ~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~-----~--- 182 (262)
++++||.||||+...+|. ..+ ....++||+.+++++|+++|++++++||.+.. .
T Consensus 2 ~~~~~D~Dgtl~~~~~~~------------~~~------~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~ 63 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYV------------HEI------DNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQ 63 (176)
T ss_pred CEEEEeCCCCEeCCCCCC------------CCH------HHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHH
Confidence 689999999999643321 011 13568899999999999999999999998841 1
Q ss_pred ----HHHHHHHHHhcCCCCcceeEeeC-----------CCCCCCCchh-hhHHHHHhhhhcCc--cEEEEECCCcccccc
Q 024820 183 ----RNTTEKNLLFAGYSDWKKLFLRG-----------PSDQGKPATV-YKSEKRLELVNEGY--RIHGSSGDQWSDLLG 244 (262)
Q Consensus 183 ----r~~T~~nL~~~G~~~~~~Lilr~-----------~~~~~Kp~~~-~Ks~~r~~L~~~g~--~iv~~IGDq~sDl~g 244 (262)
+......|.+.|+. .+.++... ....+||.+. +... +++.|. .-+++|||+++|+.+
T Consensus 64 ~~~~~~~~~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a----~~~~~~~~~~~v~VGDs~~Di~a 138 (176)
T TIGR00213 64 FEQLTEWMDWSLAERDVD-LDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQA----RKELHIDMAQSYMVGDKLEDMQA 138 (176)
T ss_pred HHHHHHHHHHHHHHcCCC-ccEEEECCCCCcccccccCCCCCCCCCHHHHHHH----HHHcCcChhhEEEEcCCHHHHHH
Confidence 23334566777776 24444432 1224677653 3322 222233 357889999999999
Q ss_pred cc-ccccE
Q 024820 245 FA-KAERS 251 (262)
Q Consensus 245 ~~-~g~r~ 251 (262)
|+ +|.++
T Consensus 139 A~~aG~~~ 146 (176)
T TIGR00213 139 GVAAKVKT 146 (176)
T ss_pred HHHCCCcE
Confidence 97 78887
No 56
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=99.29 E-value=1.8e-11 Score=101.27 Aligned_cols=126 Identities=25% Similarity=0.270 Sum_probs=94.2
Q ss_pred eEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHH
Q 024820 112 AWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLL 191 (262)
Q Consensus 112 aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~ 191 (262)
.||+|||||+..+.-.- +.. -..+++...||+.+++++++++|+++.|+|+|+..+...|..||.
T Consensus 1 VVvsDIDGTiT~SD~~G--~i~-------------~~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~ 65 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLG--HIL-------------PILGKDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLA 65 (157)
T ss_pred CEEEeccCCcCccchhh--hhh-------------hccCchhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHH
Confidence 48999999999884200 000 002344667999999999999999999999999999999999999
Q ss_pred hc-----CCCCcceeEeeCCC---------CCCCCchhhhHHHHHhhhhc----CccEEEEECCCcccccccc-c---cc
Q 024820 192 FA-----GYSDWKKLFLRGPS---------DQGKPATVYKSEKRLELVNE----GYRIHGSSGDQWSDLLGFA-K---AE 249 (262)
Q Consensus 192 ~~-----G~~~~~~Lilr~~~---------~~~Kp~~~~Ks~~r~~L~~~----g~~iv~~IGDq~sDl~g~~-~---g~ 249 (262)
++ +||. --+++.++. -..+| .++|....+.|... +-.+.+.+|+..+|+.+-. + -.
T Consensus 66 ~~~q~~~~lP~-Gpv~~sP~~l~~al~rEvi~~~p-~~fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip~~ 143 (157)
T PF08235_consen 66 QHQQQGHNLPD-GPVLLSPDSLFSALHREVISKDP-EEFKIACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIPKS 143 (157)
T ss_pred HHHhCCccCCC-CCEEECCcchhhhhhccccccCh-HHHHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCChh
Confidence 99 8986 455665431 12223 46998888888775 6678999999999998755 2 34
Q ss_pred cEEEe
Q 024820 250 RSFKL 254 (262)
Q Consensus 250 r~fkl 254 (262)
|.|.+
T Consensus 144 rIF~I 148 (157)
T PF08235_consen 144 RIFII 148 (157)
T ss_pred hEEEE
Confidence 66654
No 57
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.28 E-value=2e-11 Score=103.05 Aligned_cols=128 Identities=18% Similarity=0.163 Sum_probs=84.8
Q ss_pred CceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccc-----c--
Q 024820 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEF-----Q-- 182 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~-----~-- 182 (262)
.++++||.||||..+...+. +.++ ...++||+.+++++|+++|++++++||.+.. .
T Consensus 3 ~~~~~~d~~~t~~~~~~~~~-----------~~~~------~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~ 65 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDGYV-----------KSPD------EWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEA 65 (181)
T ss_pred ccEEEEECCCCcccCCcccc-----------CCHH------HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHH
Confidence 57999999999987742211 1121 2468999999999999999999999998731 0
Q ss_pred -----HHHHHHHHHhcCCCCcceeEeeC----C-CCCCCCchhhhHHHHHhhhhcCccEEEEECCCcccccccc-ccccE
Q 024820 183 -----RNTTEKNLLFAGYSDWKKLFLRG----P-SDQGKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFA-KAERS 251 (262)
Q Consensus 183 -----r~~T~~nL~~~G~~~~~~Lilr~----~-~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~-~g~r~ 251 (262)
++.....|+++|+. ++.++... + ....||++..-....+.+. .....+++|||+.+|+.+++ +|.++
T Consensus 66 ~~~~~~~~~~~~l~~~g~~-f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~-~~~~~~~~VgDs~~Di~~A~~aG~~~ 143 (181)
T PRK08942 66 QLNALHEKMDWSLADRGGR-LDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLN-IDLAGSPMVGDSLRDLQAAAAAGVTP 143 (181)
T ss_pred HHHHHHHHHHHHHHHcCCc-cceEEECCCCCCCCCcCCCCCHHHHHHHHHHcC-CChhhEEEEeCCHHHHHHHHHCCCeE
Confidence 13344567778874 34444432 1 1356776642222222221 12345888999999999997 78888
Q ss_pred EEeCC
Q 024820 252 FKLPN 256 (262)
Q Consensus 252 fklPN 256 (262)
+.++.
T Consensus 144 i~v~~ 148 (181)
T PRK08942 144 VLVRT 148 (181)
T ss_pred EEEcC
Confidence 77753
No 58
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.28 E-value=6.1e-11 Score=100.43 Aligned_cols=105 Identities=13% Similarity=-0.064 Sum_probs=69.5
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcce-eEeeCCCCCCCCch------hhhHHH-HH
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKK-LFLRGPSDQGKPAT------VYKSEK-RL 222 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~-Lilr~~~~~~Kp~~------~~Ks~~-r~ 222 (262)
..++.||+.++++.|+++|++++++|+.. +......++++|+..++. .+...+....+|.+ ..|... +.
T Consensus 78 ~~~~~~g~~e~l~~l~~~g~~~~IvS~~~---~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~ 154 (201)
T TIGR01491 78 EISLRDYAEELVRWLKEKGLKTAIVSGGI---MCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVER 154 (201)
T ss_pred hCCCCccHHHHHHHHHHCCCEEEEEeCCc---HHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHH
Confidence 47899999999999999999999999998 777888899999876433 22222211111211 122222 22
Q ss_pred hhhhcCc--cEEEEECCCcccccccc-ccccEEEeCCCC
Q 024820 223 ELVNEGY--RIHGSSGDQWSDLLGFA-KAERSFKLPNPM 258 (262)
Q Consensus 223 ~L~~~g~--~iv~~IGDq~sDl~g~~-~g~r~fklPNp~ 258 (262)
.+++.|. .-+++|||+.+|+..+. +|..+..-|+|.
T Consensus 155 ~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~ 193 (201)
T TIGR01491 155 LKRELNPSLTETVAVGDSKNDLPMFEVADISISLGDEGH 193 (201)
T ss_pred HHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCcc
Confidence 2222232 35899999999999887 565544447663
No 59
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.28 E-value=2.4e-11 Score=106.98 Aligned_cols=92 Identities=17% Similarity=0.178 Sum_probs=68.5
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchh-hhHHHHHhhhhcCc
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATV-YKSEKRLELVNEGY 229 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~-~Ks~~r~~L~~~g~ 229 (262)
..++||+.++|+.|+++ ++++++||.+.. ++..|+..+++.++.++. ...||.+. |.... .+.|.
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~--------~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~----~~~~~ 178 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ--------PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAA----EKLNV 178 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch--------HHHCCcHHhhceeEecccCCcCCCcHHHHHHHH----HHcCC
Confidence 67889999999999875 999999997732 467899888777776654 45677653 33222 22233
Q ss_pred --cEEEEECCCc-ccccccc-ccccEEEeCC
Q 024820 230 --RIHGSSGDQW-SDLLGFA-KAERSFKLPN 256 (262)
Q Consensus 230 --~iv~~IGDq~-sDl~g~~-~g~r~fklPN 256 (262)
..+++|||++ .|+.+|+ +|.+++.+..
T Consensus 179 ~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~ 209 (238)
T PRK10748 179 PIGEILHVGDDLTTDVAGAIRCGMQACWINP 209 (238)
T ss_pred ChhHEEEEcCCcHHHHHHHHHCCCeEEEEcC
Confidence 3589999995 9999997 8999988753
No 60
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.28 E-value=6.5e-11 Score=102.18 Aligned_cols=139 Identities=22% Similarity=0.165 Sum_probs=85.0
Q ss_pred CCceEEEecCCCccCChhHHHHh-ccCC---------------cCCC--------------HHHHHHHHHhcCCCCChHH
Q 024820 109 GKDAWVFDIDETLLSNLPYYAAH-GFGS---------------EIFN--------------EDAFDEWVDLAKAPALPAS 158 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~~-~~~~---------------~~~~--------------~~~~~~wv~~~~a~~ipga 158 (262)
.+++|+||+||||+++..+..-. .+|. ..+. .+.+.++. ...++.||+
T Consensus 13 ~~k~iiFD~DGTL~~~~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~ 90 (219)
T TIGR00338 13 SKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKGLPVELLKEVR--ENLPLTEGA 90 (219)
T ss_pred cCCEEEEeCcccCCCchHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCHHHHHHHH--hcCCcCCCH
Confidence 46799999999999986543211 1110 0010 11112222 346789999
Q ss_pred HHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEe-----------eCCCCCC--CCchhhhHHHHHhhh
Q 024820 159 LTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL-----------RGPSDQG--KPATVYKSEKRLELV 225 (262)
Q Consensus 159 lell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lil-----------r~~~~~~--Kp~~~~Ks~~r~~L~ 225 (262)
.++++.|+++|++++++||.. +......++++|+..++...+ .+....+ |+. .+ +..++
T Consensus 91 ~~~l~~l~~~g~~~~IvS~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~~----~~~~~ 162 (219)
T TIGR00338 91 EELVKTLKEKGYKVAVISGGF---DLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGK-TL----LILLR 162 (219)
T ss_pred HHHHHHHHHCCCEEEEECCCc---HHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHH-HH----HHHHH
Confidence 999999999999999999987 667777888899976543211 1111111 221 12 12222
Q ss_pred hcC--ccEEEEECCCcccccccc-ccccEEEeCCC
Q 024820 226 NEG--YRIHGSSGDQWSDLLGFA-KAERSFKLPNP 257 (262)
Q Consensus 226 ~~g--~~iv~~IGDq~sDl~g~~-~g~r~fklPNp 257 (262)
+.| ...+++|||+.+|+.++. +|..+..-|++
T Consensus 163 ~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~~~~~ 197 (219)
T TIGR00338 163 KEGISPENTVAVGDGANDLSMIKAAGLGIAFNAKP 197 (219)
T ss_pred HcCCCHHHEEEEECCHHHHHHHHhCCCeEEeCCCH
Confidence 223 335788999999999987 56654433443
No 61
>PRK06769 hypothetical protein; Validated
Probab=99.27 E-value=8.7e-12 Score=104.94 Aligned_cols=125 Identities=18% Similarity=0.162 Sum_probs=81.9
Q ss_pred CCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCcccc-----H
Q 024820 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQ-----R 183 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~-----r 183 (262)
+.++++||.||||--. ++ |.......++||+.+++++|+++|++++++||.++.. .
T Consensus 3 ~~~~~~~d~d~~~~~~-~~------------------~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~ 63 (173)
T PRK06769 3 NIQAIFIDRDGTIGGD-TT------------------IHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATI 63 (173)
T ss_pred CCcEEEEeCCCcccCC-CC------------------CCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCH
Confidence 5679999999999421 00 0111235789999999999999999999999987421 1
Q ss_pred HHHHHHHHhcCCCCcce-eEeeCCC-CCCCCchh-hhHHHHHhhhhcCccEEEEECCCcccccccc-ccccEEEe
Q 024820 184 NTTEKNLLFAGYSDWKK-LFLRGPS-DQGKPATV-YKSEKRLELVNEGYRIHGSSGDQWSDLLGFA-KAERSFKL 254 (262)
Q Consensus 184 ~~T~~nL~~~G~~~~~~-Lilr~~~-~~~Kp~~~-~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~-~g~r~fkl 254 (262)
..+...|+..|+..+.. ....+++ ..+||.+. +.... +.+. ....-+++|||++.|+.+|+ +|.+++.+
T Consensus 64 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~-~~l~-~~p~~~i~IGD~~~Di~aA~~aGi~~i~v 136 (173)
T PRK06769 64 ADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAA-EKHG-LDLTQCAVIGDRWTDIVAAAKVNATTILV 136 (173)
T ss_pred HHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHH-HHcC-CCHHHeEEEcCCHHHHHHHHHCCCeEEEE
Confidence 23445588888865321 1112222 45677664 33222 2221 12345899999999999988 78888866
No 62
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.26 E-value=3e-11 Score=103.16 Aligned_cols=92 Identities=16% Similarity=0.132 Sum_probs=63.7
Q ss_pred cCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEe--eCCCC---CCCCchhhhHHHHHhh
Q 024820 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFL--RGPSD---QGKPATVYKSEKRLEL 224 (262)
Q Consensus 150 ~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lil--r~~~~---~~Kp~~~~Ks~~r~~L 224 (262)
...+++||+.++++.|+++ ++++++|+.. +..+...|+++|++.++...+ ..++. ..++.+..|....+.+
T Consensus 65 ~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~---~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~ 140 (205)
T PRK13582 65 ATLDPLPGAVEFLDWLRER-FQVVILSDTF---YEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKAL 140 (205)
T ss_pred HhCCCCCCHHHHHHHHHhc-CCEEEEeCCc---HHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHH
Confidence 3577899999999999999 9999999999 788889999999986543221 11110 0011123444444445
Q ss_pred hhcCccEEEEECCCcccccccc
Q 024820 225 VNEGYRIHGSSGDQWSDLLGFA 246 (262)
Q Consensus 225 ~~~g~~iv~~IGDq~sDl~g~~ 246 (262)
...+ ..+++|||+.+|+..+.
T Consensus 141 ~~~~-~~~v~iGDs~~D~~~~~ 161 (205)
T PRK13582 141 KSLG-YRVIAAGDSYNDTTMLG 161 (205)
T ss_pred HHhC-CeEEEEeCCHHHHHHHH
Confidence 4433 56889999999997665
No 63
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.26 E-value=2.3e-11 Score=127.36 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=78.0
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCC-CcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCcc
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS-DWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGYR 230 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~-~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~~ 230 (262)
.++||+.+++++|+++|++++++||.. +......|+++|+. .+++.++..++ ...||++..-....+.+.. ...
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~---~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv-~p~ 236 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSAD---RIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGV-PTS 236 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCc---HHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCc-Ccc
Confidence 479999999999999999999999998 77778889999996 56777777654 4578876432222223321 234
Q ss_pred EEEEECCCcccccccc-ccccEEEeCCC
Q 024820 231 IHGSSGDQWSDLLGFA-KAERSFKLPNP 257 (262)
Q Consensus 231 iv~~IGDq~sDl~g~~-~g~r~fklPNp 257 (262)
-+++|||+..|+++|+ +|++++.+...
T Consensus 237 e~v~IgDs~~Di~AA~~aGm~~I~v~~~ 264 (1057)
T PLN02919 237 ECVVIEDALAGVQAARAAGMRCIAVTTT 264 (1057)
T ss_pred cEEEEcCCHHHHHHHHHcCCEEEEECCC
Confidence 5889999999999998 89999988653
No 64
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.24 E-value=1.7e-10 Score=96.63 Aligned_cols=99 Identities=19% Similarity=0.157 Sum_probs=71.0
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-C---------C-------CCCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-D---------Q-------GKPA 213 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~---------~-------~Kp~ 213 (262)
..++.||+.++++.|+++|++++++|+.. +......|+++|+..+++.++..+. . . ..+.
T Consensus 70 ~~~l~~g~~~ll~~l~~~g~~~~i~S~~~---~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 146 (188)
T TIGR01489 70 SAPIDPGFKEFIAFIKEHGIDFIVISDGN---DFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPC 146 (188)
T ss_pred hCCCCccHHHHHHHHHHcCCcEEEEeCCc---HHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCC
Confidence 46899999999999999999999999998 6777788899999876665554321 0 0 1112
Q ss_pred hhhhHHHHHhhhhcCccEEEEECCCccccccccccccEE
Q 024820 214 TVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFAKAERSF 252 (262)
Q Consensus 214 ~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~~g~r~f 252 (262)
...|....+.+....+..+++|||+.+|+.++.....+|
T Consensus 147 g~~K~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d~~~ 185 (188)
T TIGR01489 147 GCCKGKVIHKLSEPKYQHIIYIGDGVTDVCPAKLSDVVF 185 (188)
T ss_pred CCCHHHHHHHHHhhcCceEEEECCCcchhchHhcCCccc
Confidence 234655555554421567899999999999987444333
No 65
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.22 E-value=1.2e-11 Score=104.40 Aligned_cols=139 Identities=12% Similarity=-0.051 Sum_probs=91.1
Q ss_pred CceEEEecCCCccCChhHHHHhc-cC-CcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccC-ccccHHHH
Q 024820 110 KDAWVFDIDETLLSNLPYYAAHG-FG-SEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGR-NEFQRNTT 186 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~y~~~~~-~~-~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR-~e~~r~~T 186 (262)
++.||||+|+|+.+.+-+.-.+. +. .++-+. ...+ ......+++||+.++++.|+++|++++++|++ . +...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~---~~~~ 76 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNS-IIID-KSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDV---PEWA 76 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCC-eEEe-CCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCC---hHHH
Confidence 45799999999988644332211 00 000000 0000 01234688999999999999999999999998 6 6677
Q ss_pred HHHHHhcCCC---------CcceeEeeCCCC-CCCCchhhhHHHHHhhhh-----cCccEEEEECCCcccccccc-cccc
Q 024820 187 EKNLLFAGYS---------DWKKLFLRGPSD-QGKPATVYKSEKRLELVN-----EGYRIHGSSGDQWSDLLGFA-KAER 250 (262)
Q Consensus 187 ~~nL~~~G~~---------~~~~Lilr~~~~-~~Kp~~~~Ks~~r~~L~~-----~g~~iv~~IGDq~sDl~g~~-~g~r 250 (262)
...|..+|+. .+++.++.++.. +.||.. ...+.+.+ .....+++|||+..|+.+++ +|.+
T Consensus 77 ~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~----~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~ 152 (174)
T TIGR01685 77 YEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLE----MILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVT 152 (174)
T ss_pred HHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHH----HHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCE
Confidence 7888999987 777777776542 222221 11222222 22346899999999999988 8999
Q ss_pred EEEeCCC
Q 024820 251 SFKLPNP 257 (262)
Q Consensus 251 ~fklPNp 257 (262)
++.++..
T Consensus 153 ~i~v~~g 159 (174)
T TIGR01685 153 SCYCPSG 159 (174)
T ss_pred EEEcCCC
Confidence 9988653
No 66
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=99.17 E-value=1.3e-10 Score=97.32 Aligned_cols=143 Identities=20% Similarity=0.244 Sum_probs=96.0
Q ss_pred CCCCceEEEecCCCccCChhHHHHhccCCcCCC---------HHHHHHHHHh--cCCCCChHHHHHHHHHHHCCCeEEEE
Q 024820 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFN---------EDAFDEWVDL--AKAPALPASLTFYKELKQLGFKIFLL 175 (262)
Q Consensus 107 ~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~---------~~~~~~wv~~--~~a~~ipgalell~~Lk~~GikI~~v 175 (262)
+..+-+|-||||+|+|-++|+.. +|.+.|+ +.-|++-..- .-.-|..-+.+|++.-+++|-+|+|+
T Consensus 60 G~~Pi~VsFDIDDTvLFsSp~F~---~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~Fv 136 (237)
T COG3700 60 GRPPIAVSFDIDDTVLFSSPGFW---RGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFV 136 (237)
T ss_pred CCCCeeEeeccCCeeEecccccc---cCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEE
Confidence 45677999999999999998652 2322232 3345443322 22457778899999999999999999
Q ss_pred ccCccccHHHHHHHHHh-cCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECCCcccccccc-c---ccc
Q 024820 176 TGRNEFQRNTTEKNLLF-AGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFA-K---AER 250 (262)
Q Consensus 176 TgR~e~~r~~T~~nL~~-~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~-~---g~r 250 (262)
|||+...-+.+.+.|.+ +.+.....+++.++. .||. +-..-..|++.+. -+..||+.+|+.+++ + |.|
T Consensus 137 TGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk--~k~~---qy~Kt~~i~~~~~--~IhYGDSD~Di~AAkeaG~RgIR 209 (237)
T COG3700 137 TGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDK--PKPG---QYTKTQWIQDKNI--RIHYGDSDNDITAAKEAGARGIR 209 (237)
T ss_pred ecCCCCcccccchhHHhhcccCCCcceeeccCC--CCcc---cccccHHHHhcCc--eEEecCCchhhhHHHhcCcccee
Confidence 99997766666666765 455443445665543 3442 2233345666554 467999999999887 4 455
Q ss_pred EEEeCCCCC
Q 024820 251 SFKLPNPMY 259 (262)
Q Consensus 251 ~fklPNp~Y 259 (262)
...-||.+|
T Consensus 210 ilRAaNSTy 218 (237)
T COG3700 210 ILRAANSTY 218 (237)
T ss_pred EEecCCccC
Confidence 555589887
No 67
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.16 E-value=2.5e-10 Score=99.09 Aligned_cols=95 Identities=15% Similarity=0.045 Sum_probs=64.1
Q ss_pred cCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC--cc--eeEeeCCC-CCCCCchh---------
Q 024820 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD--WK--KLFLRGPS-DQGKPATV--------- 215 (262)
Q Consensus 150 ~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~--~~--~Lilr~~~-~~~Kp~~~--------- 215 (262)
...++.||+.++++.|+++|++++++|+.. +......|+++ +.. .. .+.+.++. ...||.+.
T Consensus 71 ~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~---~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~ 146 (219)
T PRK09552 71 ETAEIREGFHEFVQFVKENNIPFYVVSGGM---DFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCG 146 (219)
T ss_pred hCCCcCcCHHHHHHHHHHcCCeEEEECCCc---HHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCC
Confidence 357899999999999999999999999998 77778888887 653 11 22233222 12333322
Q ss_pred -hhHHHHHhhhhcCccEEEEECCCcccccccc-ccc
Q 024820 216 -YKSEKRLELVNEGYRIHGSSGDQWSDLLGFA-KAE 249 (262)
Q Consensus 216 -~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~-~g~ 249 (262)
-|....+++... ..-+++|||+.+|+.++. +|.
T Consensus 147 ~~K~~~l~~~~~~-~~~~i~iGDs~~Di~aa~~Ag~ 181 (219)
T PRK09552 147 CCKPSLIRKLSDT-NDFHIVIGDSITDLEAAKQADK 181 (219)
T ss_pred CchHHHHHHhccC-CCCEEEEeCCHHHHHHHHHCCc
Confidence 144443444332 235789999999999987 444
No 68
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.11 E-value=8.1e-10 Score=91.56 Aligned_cols=109 Identities=23% Similarity=0.307 Sum_probs=85.2
Q ss_pred CCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHH
Q 024820 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTT 186 (262)
Q Consensus 107 ~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T 186 (262)
..|.+++|+|+|.||+.=. ...+-|.+.+.+..++++|++++++||.+ +.-.
T Consensus 25 ~~Gikgvi~DlDNTLv~wd-------------------------~~~~tpe~~~W~~e~k~~gi~v~vvSNn~---e~RV 76 (175)
T COG2179 25 AHGIKGVILDLDNTLVPWD-------------------------NPDATPELRAWLAELKEAGIKVVVVSNNK---ESRV 76 (175)
T ss_pred HcCCcEEEEeccCceeccc-------------------------CCCCCHHHHHHHHHHHhcCCEEEEEeCCC---HHHH
Confidence 3588999999999999621 24566888999999999999999999988 4556
Q ss_pred HHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCcc--EEEEECCCc-ccccccc-ccccEEEe
Q 024820 187 EKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYR--IHGSSGDQW-SDLLGFA-KAERSFKL 254 (262)
Q Consensus 187 ~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~--iv~~IGDq~-sDl~g~~-~g~r~fkl 254 (262)
..+++++|++. +.+ ..|| +-.+.|++|.+.+.. .+++||||. +|+.||+ +|+|++.+
T Consensus 77 ~~~~~~l~v~f----i~~----A~KP---~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV 137 (175)
T COG2179 77 ARAAEKLGVPF----IYR----AKKP---FGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILV 137 (175)
T ss_pred HhhhhhcCCce----eec----ccCc---cHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEE
Confidence 67888999975 323 2344 345677777766655 599999997 5999999 89999886
No 69
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.11 E-value=1.4e-10 Score=95.87 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=73.4
Q ss_pred ceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHH
Q 024820 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNL 190 (262)
Q Consensus 111 ~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL 190 (262)
++|+||+||||+++..++...+. + . ..--..++. .+++|+++|++++++||++ +..+...|
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~----~----~------~~~~~~~~~--~i~~Lk~~G~~i~IvTn~~---~~~~~~~l 62 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYYTNNGE----E----I------KAFNVRDGY--GIRCALKSGIEVAIITGRK---AKLVEDRC 62 (154)
T ss_pred eEEEEeCceeEEcCeEEECCCCc----E----E------EEEechhHH--HHHHHHHCCCEEEEEECCC---CHHHHHHH
Confidence 68999999999997553321100 0 0 000011222 7899999999999999999 67778899
Q ss_pred HhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECCCcccccccc-ccccEEEeCC
Q 024820 191 LFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFA-KAERSFKLPN 256 (262)
Q Consensus 191 ~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~-~g~r~fklPN 256 (262)
+++|+..++. + ..+||.. ......++. .....+++|||+.+|+..+. +|.. |.+.|
T Consensus 63 ~~~gi~~~~~----~--~~~k~~~--~~~~~~~~~-~~~~~~~~vGDs~~D~~~~~~ag~~-~~v~~ 119 (154)
T TIGR01670 63 KTLGITHLYQ----G--QSNKLIA--FSDILEKLA-LAPENVAYIGDDLIDWPVMEKVGLS-VAVAD 119 (154)
T ss_pred HHcCCCEEEe----c--ccchHHH--HHHHHHHcC-CCHHHEEEECCCHHHHHHHHHCCCe-EecCC
Confidence 9999976432 1 1233322 111111111 12346899999999999887 4553 66544
No 70
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.10 E-value=5e-10 Score=97.88 Aligned_cols=146 Identities=16% Similarity=0.138 Sum_probs=96.0
Q ss_pred CCCceEEEecCCCccCChhHHHHhc------cCCcCC-------------------------CHHHHHHHHHh-------
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAHG------FGSEIF-------------------------NEDAFDEWVDL------- 149 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~~------~~~~~~-------------------------~~~~~~~wv~~------- 149 (262)
.+..+++||+|||++||...|.+.. +|. .| ++-+|.++..+
T Consensus 8 ~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk-~~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~~~~~ 86 (222)
T KOG2914|consen 8 LKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGK-PYPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEEILDR 86 (222)
T ss_pred cceeeEEEecCCcEEecHHHHHHHHHHHHHHcCC-CChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 3567899999999999988764421 121 11 12222222221
Q ss_pred --cCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC-cceeEeeCCC---CCCCCchhhhHHHHHh
Q 024820 150 --AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD-WKKLFLRGPS---DQGKPATVYKSEKRLE 223 (262)
Q Consensus 150 --~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~-~~~Lilr~~~---~~~Kp~~~~Ks~~r~~ 223 (262)
....++||+.+|++.|+.+|+++.++|+++....+.-..++.. +-. +.+.++ +++ .++||++..--..++.
T Consensus 87 ~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~--~~~~f~~~v~-~d~~~v~~gKP~Pdi~l~A~~~ 163 (222)
T KOG2914|consen 87 LFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHED--IFKNFSHVVL-GDDPEVKNGKPDPDIYLKAAKR 163 (222)
T ss_pred hccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhH--HHHhcCCCee-cCCccccCCCCCchHHHHHHHh
Confidence 4578999999999999999999999999985554444444331 222 223344 332 5678877533233333
Q ss_pred hhhcCccEEEEECCCcccccccc-ccccEEEeCCC
Q 024820 224 LVNEGYRIHGSSGDQWSDLLGFA-KAERSFKLPNP 257 (262)
Q Consensus 224 L~~~g~~iv~~IGDq~sDl~g~~-~g~r~fklPNp 257 (262)
+......-+++++|+...+++++ +|+.++.+|++
T Consensus 164 l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~ 198 (222)
T KOG2914|consen 164 LGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATP 198 (222)
T ss_pred cCCCCccceEEECCCHHHHHHHHhcCCeEEEecCC
Confidence 43322245889999999999998 89999999983
No 71
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.10 E-value=2.6e-10 Score=91.41 Aligned_cols=116 Identities=16% Similarity=0.092 Sum_probs=73.1
Q ss_pred ceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccC-ccccHHHHHHH
Q 024820 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGR-NEFQRNTTEKN 189 (262)
Q Consensus 111 ~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR-~e~~r~~T~~n 189 (262)
+.++||+||||++..... .+... -+. ..+++||+.++++.|+++|++++++|++ . +..+...
T Consensus 1 kli~~DlD~Tl~~~~~~~---------~~~~~---~~~--~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~---~~~~~~~ 63 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIV---------VGEDP---IID--LEVTIKEIRDKLQTLKKNGFLLALASYNDD---PHVAYEL 63 (128)
T ss_pred CEEEEeCCCCCCCCCccc---------ccCCc---chh--hHHHHHHHHHHHHHHHHCCeEEEEEeCCCC---HHHHHHH
Confidence 478999999999763100 00000 000 0168999999999999999999999999 6 5566677
Q ss_pred HHhcC-------CCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECCCccccccc
Q 024820 190 LLFAG-------YSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGF 245 (262)
Q Consensus 190 L~~~G-------~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~ 245 (262)
|+..| +..+++.+..++. .++|....+...+.+. .....-+++|||+..++.+-
T Consensus 64 l~~~~~~~~i~~l~~~f~~~~~~~~-~pkp~~~~~a~~~lg~-~~~p~~~l~igDs~~n~~~~ 124 (128)
T TIGR01681 64 LKIFEDFGIIFPLAEYFDPLTIGYW-LPKSPRLVEIALKLNG-VLKPKSILFVDDRPDNNEEV 124 (128)
T ss_pred HHhccccccchhhHhhhhhhhhcCC-CcHHHHHHHHHHHhcC-CCCcceEEEECCCHhHHHHH
Confidence 77777 5555555554432 3344332333332220 01234689999999987653
No 72
>PLN02811 hydrolase
Probab=99.08 E-value=6.7e-10 Score=96.44 Aligned_cols=105 Identities=16% Similarity=0.125 Sum_probs=73.8
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCC--C-CCCCCchhhhHHHHHhhhh-
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGP--S-DQGKPATVYKSEKRLELVN- 226 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~--~-~~~Kp~~~~Ks~~r~~L~~- 226 (262)
..+++||+.++++.|+++|++++++||.... ..+...++..|+..+++.++.++ + ..+||.+..-......+..
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~--~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~ 153 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKR--HFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDG 153 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchh--hHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCC
Confidence 5678999999999999999999999998722 23333444456766677677666 3 3567766432222223321
Q ss_pred -cCccEEEEECCCcccccccc-ccccEEEeCCC
Q 024820 227 -EGYRIHGSSGDQWSDLLGFA-KAERSFKLPNP 257 (262)
Q Consensus 227 -~g~~iv~~IGDq~sDl~g~~-~g~r~fklPNp 257 (262)
.....+++|||+.+|++++. +|.+++.++++
T Consensus 154 ~~~~~~~v~IgDs~~di~aA~~aG~~~i~v~~~ 186 (220)
T PLN02811 154 PVDPGKVLVFEDAPSGVEAAKNAGMSVVMVPDP 186 (220)
T ss_pred CCCccceEEEeccHhhHHHHHHCCCeEEEEeCC
Confidence 12346899999999999997 79999998654
No 73
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.07 E-value=9.6e-10 Score=102.41 Aligned_cols=130 Identities=17% Similarity=0.172 Sum_probs=87.8
Q ss_pred CCceEEEecCCCccCChh--HHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCc-------
Q 024820 109 GKDAWVFDIDETLLSNLP--YYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRN------- 179 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~--y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~------- 179 (262)
++++++||-||||+.... |... + ....+++||+.+++.+|+++|++++++||.+
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y~~~---------------~--~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~ 63 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDFQVD---------------S--LDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSF 63 (354)
T ss_pred CCcEEEEeCCCCccCCCCcccccc---------------C--cccceECcCHHHHHHHHHhCCCeEEEEECCccccCccc
Confidence 367899999999998632 1110 0 1247899999999999999999999999952
Q ss_pred -cc----cHHHHHHHHHhcCCCCcceeEeeC-----CCCCCCCchhhhHHHHHhhhhcCccEEEEECCCcccccccc-cc
Q 024820 180 -EF----QRNTTEKNLLFAGYSDWKKLFLRG-----PSDQGKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFA-KA 248 (262)
Q Consensus 180 -e~----~r~~T~~nL~~~G~~~~~~Lilr~-----~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~-~g 248 (262)
+. .+....+.|+..|+. ++.+++.. +...+||.+..-....+.+. .....+++|||+.+|+.+++ +|
T Consensus 64 ~~~~l~~~~~~i~~iL~~~gl~-fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~-v~~~~svmIGDs~sDi~aAk~aG 141 (354)
T PRK05446 64 PQEDFDPPHNLMMQIFESQGIK-FDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGA-IDLANSYVIGDRETDVQLAENMG 141 (354)
T ss_pred cHHHHhhHHHHHHHHHHHcCCc-eeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcC-CCcccEEEEcCCHHHHHHHHHCC
Confidence 11 144567788899986 34555553 11355665432212222221 12346899999999999987 89
Q ss_pred ccEEEeCCCC
Q 024820 249 ERSFKLPNPM 258 (262)
Q Consensus 249 ~r~fklPNp~ 258 (262)
.+++.+ ||-
T Consensus 142 i~~I~v-~~~ 150 (354)
T PRK05446 142 IKGIRY-ARE 150 (354)
T ss_pred CeEEEE-ECC
Confidence 998866 443
No 74
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.06 E-value=1.8e-09 Score=93.18 Aligned_cols=103 Identities=21% Similarity=0.186 Sum_probs=77.8
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhhhcCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELVNEGY 229 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~ 229 (262)
..++.|+++++++.++++ ++++++||-. +......|++.|+..+++.++.+++ ...||++..-......+... .
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~---~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~-p 171 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGA---RPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVP-P 171 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCC---hHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCC-c
Confidence 378999999999999999 9999999976 7788899999999887776666554 56788775433333333211 3
Q ss_pred cEEEEECCCcc-cccccc-ccccEEEeCCCC
Q 024820 230 RIHGSSGDQWS-DLLGFA-KAERSFKLPNPM 258 (262)
Q Consensus 230 ~iv~~IGDq~s-Dl~g~~-~g~r~fklPNp~ 258 (262)
..+++|||+.. |+.|+. +|++++-+..+.
T Consensus 172 ~~~l~VgD~~~~di~gA~~~G~~~vwi~~~~ 202 (229)
T COG1011 172 EEALFVGDSLENDILGARALGMKTVWINRGG 202 (229)
T ss_pred ceEEEECCChhhhhHHHHhcCcEEEEECCCC
Confidence 46899999765 658877 899998776544
No 75
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.05 E-value=1.7e-10 Score=96.97 Aligned_cols=118 Identities=12% Similarity=0.091 Sum_probs=79.4
Q ss_pred CCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHH
Q 024820 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~ 188 (262)
..+++|||+|||+.|+.-|+...+.....|+.. .| .-++.|+++|++++++||++ ...+..
T Consensus 6 ~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~--------------D~--~~~~~L~~~Gi~laIiT~k~---~~~~~~ 66 (169)
T TIGR02726 6 NIKLVILDVDGVMTDGRIVINDEGIESRNFDIK--------------DG--MGVIVLQLCGIDVAIITSKK---SGAVRH 66 (169)
T ss_pred cCeEEEEeCceeeECCeEEEcCCCcEEEEEecc--------------hH--HHHHHHHHCCCEEEEEECCC---cHHHHH
Confidence 367999999999999977665443332334311 11 23567889999999999999 778889
Q ss_pred HHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCc--cEEEEECCCccccccccccccEEEeCC
Q 024820 189 NLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGY--RIHGSSGDQWSDLLGFAKAERSFKLPN 256 (262)
Q Consensus 189 nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~--~iv~~IGDq~sDl~g~~~g~r~fklPN 256 (262)
.|+++|+..+++.+ ++||. ..+..+...|. ..+++|||+.+|+.++......|..+|
T Consensus 67 ~l~~lgi~~~f~~~------kpkp~-----~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~n 125 (169)
T TIGR02726 67 RAEELKIKRFHEGI------KKKTE-----PYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVGD 125 (169)
T ss_pred HHHHCCCcEEEecC------CCCHH-----HHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECcC
Confidence 99999998655421 23332 22222233333 458999999999999874334566555
No 76
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.03 E-value=2.3e-10 Score=93.88 Aligned_cols=126 Identities=17% Similarity=-0.002 Sum_probs=81.6
Q ss_pred CCceEEEecCCCccCChh---HHH-HhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHH
Q 024820 109 GKDAWVFDIDETLLSNLP---YYA-AHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRN 184 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~---y~~-~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~ 184 (262)
++..+|+|+||||+.+.. ... ...+... + ....-.......+.||+.++|+.|+ +|++++++|+.+ +.
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~---~~ 72 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFKEWTNRDFIVP-V---LIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGL---RM 72 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCCCCCccceEEE-E---EeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCc---HH
Confidence 367899999999999742 100 0000000 0 0000000123578999999999998 679999999999 77
Q ss_pred HHHHHHHhcCCCC-cceeEeeCCC-CCCCCchhhhHHHHHhhhhcCccEEEEECCCcccccccc
Q 024820 185 TTEKNLLFAGYSD-WKKLFLRGPS-DQGKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFA 246 (262)
Q Consensus 185 ~T~~nL~~~G~~~-~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~ 246 (262)
.+...|+++|+.. +++.++..++ ..+||. ..|...+..+ ...-+++|||+..|+.+++
T Consensus 73 ~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~-~~k~l~~l~~---~p~~~i~i~Ds~~~~~aa~ 132 (148)
T smart00577 73 YADPVLDLLDPKKYFGYRRLFRDECVFVKGK-YVKDLSLLGR---DLSNVIIIDDSPDSWPFHP 132 (148)
T ss_pred HHHHHHHHhCcCCCEeeeEEECccccccCCe-EeecHHHcCC---ChhcEEEEECCHHHhhcCc
Confidence 7888899888854 4465555544 566775 3333322221 2346899999999999986
No 77
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.02 E-value=4.5e-10 Score=93.48 Aligned_cols=84 Identities=15% Similarity=0.059 Sum_probs=62.1
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchh-hhHHHHHhhhhcC
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATV-YKSEKRLELVNEG 228 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~-~Ks~~r~~L~~~g 228 (262)
..+++||+.++++ +++++||.+ +......|+++|+..+++.++..+. ...||++. |... .+.+. ..
T Consensus 88 ~~~~~~g~~~~L~-------~~~i~Tn~~---~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~-~~~~~-~~ 155 (175)
T TIGR01493 88 NLPPWPDSAAALA-------RVAILSNAS---HWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELV-FDTVG-LP 155 (175)
T ss_pred cCCCCCchHHHHH-------HHhhhhCCC---HHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHH-HHHHC-CC
Confidence 4678999999998 388999998 7777788999999887777666654 56788774 3322 22221 12
Q ss_pred ccEEEEECCCcccccccc
Q 024820 229 YRIHGSSGDQWSDLLGFA 246 (262)
Q Consensus 229 ~~iv~~IGDq~sDl~g~~ 246 (262)
...+++|||+..|+.|++
T Consensus 156 p~~~l~vgD~~~Di~~A~ 173 (175)
T TIGR01493 156 PDRVLMVAAHQWDLIGAR 173 (175)
T ss_pred HHHeEeEecChhhHHHHh
Confidence 245899999999999986
No 78
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.00 E-value=2.6e-09 Score=89.62 Aligned_cols=111 Identities=20% Similarity=0.192 Sum_probs=77.1
Q ss_pred CCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHH
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~ 187 (262)
.+.+++++|+|||++... ...++|++.+++++|+++|++++++||.+. +....
T Consensus 23 ~~v~~vv~D~Dgtl~~~~-------------------------~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~--~~~~~ 75 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPD-------------------------HNEAYPALRDWIEELKAAGRKLLIVSNNAG--EQRAK 75 (170)
T ss_pred CCCCEEEEecCCccccCC-------------------------CCCcChhHHHHHHHHHHcCCEEEEEeCCch--HHHHH
Confidence 467899999999998641 247789999999999999999999999873 23344
Q ss_pred HHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECCCc-ccccccc-ccccEEEe
Q 024820 188 KNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGDQW-SDLLGFA-KAERSFKL 254 (262)
Q Consensus 188 ~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~-sDl~g~~-~g~r~fkl 254 (262)
..++..|+..+ . ...||.+..-....+++.. ...-+++|||+. .|+.+|+ +|.+++.+
T Consensus 76 ~~~~~~gl~~~----~----~~~KP~p~~~~~~l~~~~~-~~~~~l~IGDs~~~Di~aA~~aGi~~i~v 135 (170)
T TIGR01668 76 AVEKALGIPVL----P----HAVKPPGCAFRRAHPEMGL-TSEQVAVVGDRLFTDVMGGNRNGSYTILV 135 (170)
T ss_pred HHHHHcCCEEE----c----CCCCCChHHHHHHHHHcCC-CHHHEEEECCcchHHHHHHHHcCCeEEEE
Confidence 55567776431 1 1245544322222222211 123589999998 6999997 79988877
No 79
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.97 E-value=9.3e-09 Score=87.48 Aligned_cols=103 Identities=17% Similarity=0.033 Sum_probs=70.8
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcce--eEeeCCC-CCCCCc-----hhhhHH-HHH
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKK--LFLRGPS-DQGKPA-----TVYKSE-KRL 222 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~--Lilr~~~-~~~Kp~-----~~~Ks~-~r~ 222 (262)
..+.||+.++++.++++|++++++|+.. +......++.+|+..++. +....++ ..+++. ...|.. .++
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~---~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~ 162 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASL---TILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAE 162 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCc---HHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHH
Confidence 5689999999999999999999999999 667777888889976432 2221111 122211 123332 233
Q ss_pred hhhhcCcc--EEEEECCCcccccccc-ccccEEEeCCC
Q 024820 223 ELVNEGYR--IHGSSGDQWSDLLGFA-KAERSFKLPNP 257 (262)
Q Consensus 223 ~L~~~g~~--iv~~IGDq~sDl~g~~-~g~r~fklPNp 257 (262)
.+.+.|.. .+.++||+.+|+.... +|..++.-|+|
T Consensus 163 ~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~~~ 200 (202)
T TIGR01490 163 LLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNPDK 200 (202)
T ss_pred HHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCCCC
Confidence 33444543 6788999999999887 77777877876
No 80
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=98.97 E-value=8.3e-09 Score=89.17 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=67.5
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcce--eEeeCCC-CCCC--CchhhhHHHHHhhh
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKK--LFLRGPS-DQGK--PATVYKSEKRLELV 225 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~--Lilr~~~-~~~K--p~~~~Ks~~r~~L~ 225 (262)
..++.||+.++++.+++.| +++++||.. +..+...++++|+..++. +.+.+.+ ..+. .....|....+.+.
T Consensus 66 ~i~l~pga~ell~~lk~~~-~~~IVS~~~---~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~ 141 (203)
T TIGR02137 66 TLKPLEGAVEFVDWLRERF-QVVILSDTF---YEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFK 141 (203)
T ss_pred hCCCCccHHHHHHHHHhCC-eEEEEeCCh---HHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHH
Confidence 4588999999999999985 999999998 778888999999986442 4443211 1111 11235666666666
Q ss_pred hcCccEEEEECCCcccccccc-cccc
Q 024820 226 NEGYRIHGSSGDQWSDLLGFA-KAER 250 (262)
Q Consensus 226 ~~g~~iv~~IGDq~sDl~g~~-~g~r 250 (262)
+.|. .+.+|||+.+|+.... +|..
T Consensus 142 ~~~~-~~v~vGDs~nDl~ml~~Ag~~ 166 (203)
T TIGR02137 142 SLYY-RVIAAGDSYNDTTMLSEAHAG 166 (203)
T ss_pred hhCC-CEEEEeCCHHHHHHHHhCCCC
Confidence 6565 4778999999998766 4433
No 81
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.96 E-value=2.2e-09 Score=82.80 Aligned_cols=58 Identities=22% Similarity=0.394 Sum_probs=50.5
Q ss_pred EEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHh
Q 024820 113 WVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF 192 (262)
Q Consensus 113 iIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~ 192 (262)
++||+||||... ..++||+.+++++|+++|.+++|+||.+...++...+-|++
T Consensus 1 ~l~D~dGvl~~g---------------------------~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~ 53 (101)
T PF13344_consen 1 FLFDLDGVLYNG---------------------------NEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKK 53 (101)
T ss_dssp EEEESTTTSEET---------------------------TEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHH
T ss_pred CEEeCccEeEeC---------------------------CCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHh
Confidence 689999999874 46799999999999999999999999998889999999999
Q ss_pred cCCCC
Q 024820 193 AGYSD 197 (262)
Q Consensus 193 ~G~~~ 197 (262)
+|++.
T Consensus 54 ~Gi~~ 58 (101)
T PF13344_consen 54 LGIPV 58 (101)
T ss_dssp TTTT-
T ss_pred cCcCC
Confidence 99986
No 82
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.95 E-value=9e-09 Score=85.45 Aligned_cols=94 Identities=19% Similarity=0.125 Sum_probs=63.8
Q ss_pred cCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeC--CC-----CCC--CCchhhhHHH
Q 024820 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRG--PS-----DQG--KPATVYKSEK 220 (262)
Q Consensus 150 ~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~--~~-----~~~--Kp~~~~Ks~~ 220 (262)
...++.||+.++++.++++|++++++|+.. +..++..++++|+..+..-.+.. ++ ..+ .+...-|...
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~---~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~ 146 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGF---DFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKV 146 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCc---HHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHH
Confidence 346678999999999999999999999998 77888899999997543221111 11 001 1222345444
Q ss_pred HHhhh-hcC--ccEEEEECCCcccccccc
Q 024820 221 RLELV-NEG--YRIHGSSGDQWSDLLGFA 246 (262)
Q Consensus 221 r~~L~-~~g--~~iv~~IGDq~sDl~g~~ 246 (262)
.+++. ..| +..+++|||+.+|+....
T Consensus 147 l~~~~~~~~~~~~~~~~iGDs~~D~~~~~ 175 (177)
T TIGR01488 147 LKELLEESKITLKKIIAVGDSVNDLPMLK 175 (177)
T ss_pred HHHHHHHhCCCHHHEEEEeCCHHHHHHHh
Confidence 44433 223 445899999999997654
No 83
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.93 E-value=8.4e-10 Score=93.66 Aligned_cols=112 Identities=18% Similarity=0.143 Sum_probs=71.9
Q ss_pred CCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHH
Q 024820 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~ 188 (262)
+.+.|+||+||||+++.-+....+.....|+ . .. ...++.|+++|++++++|||+ ...+..
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~--------~------~d--~~~i~~L~~~Gi~v~I~T~~~---~~~v~~ 80 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFN--------V------RD--GYGIRCLLTSGIEVAIITGRK---SKLVED 80 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEe--------c------cc--hHHHHHHHHCCCEEEEEeCCC---cHHHHH
Confidence 5889999999999997422211100000111 0 00 135667788999999999998 677888
Q ss_pred HHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCc--cEEEEECCCcccccccc-cccc
Q 024820 189 NLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGY--RIHGSSGDQWSDLLGFA-KAER 250 (262)
Q Consensus 189 nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~--~iv~~IGDq~sDl~g~~-~g~r 250 (262)
.++++|+..++. + ...|+ ...+..+++.|. ..+++|||+.+|+..++ +|..
T Consensus 81 ~l~~lgl~~~f~----g--~~~k~-----~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~ 134 (183)
T PRK09484 81 RMTTLGITHLYQ----G--QSNKL-----IAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLS 134 (183)
T ss_pred HHHHcCCceeec----C--CCcHH-----HHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCe
Confidence 999999875432 2 12232 233333334443 46999999999999987 6765
No 84
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.92 E-value=1.3e-08 Score=88.16 Aligned_cols=98 Identities=14% Similarity=0.059 Sum_probs=64.1
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcc---eeEeeCCC-CCCCCchh----------h
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWK---KLFLRGPS-DQGKPATV----------Y 216 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~---~Lilr~~~-~~~Kp~~~----------~ 216 (262)
..++.||+.++++.|+++|++++++|+.. +......|+.++..... ++.+.++. ...+|.+. -
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~---~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~ 144 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGM---DFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCC 144 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCc---HHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCC
Confidence 57899999999999999999999999998 66677777776443211 23333222 12233221 2
Q ss_pred hHHHHHhhhhcCccEEEEECCCccccccccccccEE
Q 024820 217 KSEKRLELVNEGYRIHGSSGDQWSDLLGFAKAERSF 252 (262)
Q Consensus 217 Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~~g~r~f 252 (262)
|....+++... ..-+++|||+.+|+.++..+..+|
T Consensus 145 K~~~l~~~~~~-~~~~i~iGDg~~D~~~a~~Ad~~~ 179 (214)
T TIGR03333 145 KPSLIRKLSEP-NDYHIVIGDSVTDVEAAKQSDLCF 179 (214)
T ss_pred HHHHHHHHhhc-CCcEEEEeCCHHHHHHHHhCCeeE
Confidence 44444444433 334688999999999887444343
No 85
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.90 E-value=7.3e-09 Score=93.64 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=63.2
Q ss_pred CCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHCCCeEEEEccCccccHHHH
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPA-LPASLTFYKELKQLGFKIFLLTGRNEFQRNTT 186 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~-ipgalell~~Lk~~GikI~~vTgR~e~~r~~T 186 (262)
.-++.|+||+||||++... .... -||+.+++++|+++|++++++|++. |...
T Consensus 124 ~~~kvIvFDLDgTLi~~~~------------------------~v~irdPgV~EaL~~LkekGikLaIaTS~~---Re~v 176 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEE------------------------PVRIRDPRIYDSLTELKKRGCILVLWSYGD---RDHV 176 (301)
T ss_pred ccceEEEEecCCCCcCCCC------------------------ccccCCHHHHHHHHHHHHCCCEEEEEECCC---HHHH
Confidence 3577999999999999731 2323 3899999999999999999999998 7777
Q ss_pred HHHHHhcCCCCcceeEeeCCC-CCCCC
Q 024820 187 EKNLLFAGYSDWKKLFLRGPS-DQGKP 212 (262)
Q Consensus 187 ~~nL~~~G~~~~~~Lilr~~~-~~~Kp 212 (262)
.+.|+++|+..+++.++.+.+ ...||
T Consensus 177 ~~~L~~lGLd~YFdvIIs~Gdv~~~kp 203 (301)
T TIGR01684 177 VESMRKVKLDRYFDIIISGGHKAEEYS 203 (301)
T ss_pred HHHHHHcCCCcccCEEEECCccccCCC
Confidence 899999999988887777654 33443
No 86
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.89 E-value=7.1e-09 Score=91.48 Aligned_cols=102 Identities=10% Similarity=0.109 Sum_probs=71.7
Q ss_pred CCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHH
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~ 187 (262)
+..++|+||+|||+.+. ..++||+.+++++|+++|++++++||.+.. +....
T Consensus 6 ~~~~~~~~D~dG~l~~~---------------------------~~~~pga~e~L~~L~~~G~~~~ivTN~~~~-~~~~~ 57 (242)
T TIGR01459 6 NDYDVFLLDLWGVIIDG---------------------------NHTYPGAVQNLNKIIAQGKPVYFVSNSPRN-IFSLH 57 (242)
T ss_pred hcCCEEEEecccccccC---------------------------CccCccHHHHHHHHHHCCCEEEEEeCCCCC-hHHHH
Confidence 45789999999999875 457899999999999999999999997732 33334
Q ss_pred HHHHhcCCCC-cceeEeeCCCCCCCCchhhhHHHHHhhhhcCc--cEEEEECCCcccccc
Q 024820 188 KNLLFAGYSD-WKKLFLRGPSDQGKPATVYKSEKRLELVNEGY--RIHGSSGDQWSDLLG 244 (262)
Q Consensus 188 ~nL~~~G~~~-~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~--~iv~~IGDq~sDl~g 244 (262)
+.|+++|++. +++.++.+.... ....+..+.+.|. ..+.+|||...|+..
T Consensus 58 ~~L~~~gl~~~~~~~Ii~s~~~~-------~~~l~~~~~~~~~~~~~~~~vGd~~~d~~~ 110 (242)
T TIGR01459 58 KTLKSLGINADLPEMIISSGEIA-------VQMILESKKRFDIRNGIIYLLGHLENDIIN 110 (242)
T ss_pred HHHHHCCCCccccceEEccHHHH-------HHHHHhhhhhccCCCceEEEeCCcccchhh
Confidence 7899999987 677777653210 1122222222232 347788998777643
No 87
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.86 E-value=1.7e-08 Score=98.56 Aligned_cols=121 Identities=20% Similarity=0.156 Sum_probs=80.8
Q ss_pred CCCceEEEecCCCccCChhHHHHhccCCcCC--CHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccc----
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIF--NEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEF---- 181 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~--~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~---- 181 (262)
+..+++.||+||||+.+.. +..| ++++| -.++||+.+.|+.|++.|++|+++||.+..
T Consensus 166 ~~~Kia~fD~DGTLi~t~s--------g~~~~~~~~d~--------~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~ 229 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKS--------GKVFPKGPDDW--------QIIFPEIPEKLKELEADGFKICIFTNQGGIARGK 229 (526)
T ss_pred ccCcEEEEECCCCccccCC--------CccCCCCHHHe--------eecccCHHHHHHHHHHCCCEEEEEECCcccccCc
Confidence 4578999999999997632 0112 23444 235799999999999999999999998752
Q ss_pred -----cHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHHHHhhh---hcCccEEEEECCCcccccccc
Q 024820 182 -----QRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEKRLELV---NEGYRIHGSSGDQWSDLLGFA 246 (262)
Q Consensus 182 -----~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~r~~L~---~~g~~iv~~IGDq~sDl~g~~ 246 (262)
....+...|+++|++ ++++..... ..+||.+..-......+. .....-+.+|||...|+.++.
T Consensus 230 ~~~~~~~~ki~~iL~~lgip--fdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g~ 301 (526)
T TIGR01663 230 INADDFKAKIEAIVAKLGVP--FQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANGK 301 (526)
T ss_pred ccHHHHHHHHHHHHHHcCCc--eEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcccchHHHH
Confidence 124567889999997 456666543 456775532222222221 012235889999999987643
No 88
>PLN02645 phosphoglycolate phosphatase
Probab=98.85 E-value=8.7e-09 Score=94.47 Aligned_cols=71 Identities=15% Similarity=0.249 Sum_probs=60.2
Q ss_pred CCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHH
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~ 187 (262)
+..++++||+||||++. ..++||+.+++++|+++|++++|+|||+...+....
T Consensus 26 ~~~~~~~~D~DGtl~~~---------------------------~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~ 78 (311)
T PLN02645 26 DSVETFIFDCDGVIWKG---------------------------DKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYG 78 (311)
T ss_pred HhCCEEEEeCcCCeEeC---------------------------CccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHH
Confidence 35789999999999985 246799999999999999999999999988888888
Q ss_pred HHHHhcCCCCcceeEeeC
Q 024820 188 KNLLFAGYSDWKKLFLRG 205 (262)
Q Consensus 188 ~nL~~~G~~~~~~Lilr~ 205 (262)
+.|+++|++...+-++.+
T Consensus 79 ~~l~~lGi~~~~~~I~ts 96 (311)
T PLN02645 79 KKFESLGLNVTEEEIFSS 96 (311)
T ss_pred HHHHHCCCCCChhhEeeh
Confidence 999999998644444443
No 89
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=98.83 E-value=5.4e-08 Score=89.81 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=63.5
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcce--eEe-----eC----CCCCCCCchhhhHH
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKK--LFL-----RG----PSDQGKPATVYKSE 219 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~--Lil-----r~----~~~~~Kp~~~~Ks~ 219 (262)
..++.||+.++++.|++.|++++++||.. ...+...++++|+..... +-+ .+ +...++ .|..
T Consensus 179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~---~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k----~K~~ 251 (322)
T PRK11133 179 NLPLMPGLTELVLKLQALGWKVAIASGGF---TYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQ----YKAD 251 (322)
T ss_pred hCCCChhHHHHHHHHHHcCCEEEEEECCc---chhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcc----cHHH
Confidence 57899999999999999999999999988 444556667788864221 111 11 111122 3433
Q ss_pred HHHhh-hhcCc--cEEEEECCCcccccccc-ccccEEEeCCC
Q 024820 220 KRLEL-VNEGY--RIHGSSGDQWSDLLGFA-KAERSFKLPNP 257 (262)
Q Consensus 220 ~r~~L-~~~g~--~iv~~IGDq~sDl~g~~-~g~r~fklPNp 257 (262)
..+++ +..|. ..+++|||+.+|+.... +| ..+.+ |+
T Consensus 252 ~L~~la~~lgi~~~qtIaVGDg~NDl~m~~~AG-lgiA~-nA 291 (322)
T PRK11133 252 TLTRLAQEYEIPLAQTVAIGDGANDLPMIKAAG-LGIAY-HA 291 (322)
T ss_pred HHHHHHHHcCCChhhEEEEECCHHHHHHHHHCC-CeEEe-CC
Confidence 33333 23343 46899999999999876 44 34444 54
No 90
>PRK08238 hypothetical protein; Validated
Probab=98.74 E-value=8.8e-08 Score=92.77 Aligned_cols=134 Identities=18% Similarity=0.144 Sum_probs=82.1
Q ss_pred CCCceEEEecCCCccCChhHHHHhcc--CCcCCC-----------HHHHHHHHH------hcCCCCChHHHHHHHHHHHC
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAHGF--GSEIFN-----------EDAFDEWVD------LAKAPALPASLTFYKELKQL 168 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~~~--~~~~~~-----------~~~~~~wv~------~~~a~~ipgalell~~Lk~~ 168 (262)
......+||+||||+.+.-......+ ...++. .....+.+. .+..|..||+.+++++++++
T Consensus 8 ~~~~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~ 87 (479)
T PRK08238 8 SRDLPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAA 87 (479)
T ss_pred CCCCCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHC
Confidence 34558999999999987554322111 111100 011111111 13346789999999999999
Q ss_pred CCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CCCCCchhhhHHH-HHhhhhcCccEEEEECCCcccccccc
Q 024820 169 GFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQGKPATVYKSEK-RLELVNEGYRIHGSSGDQWSDLLGFA 246 (262)
Q Consensus 169 GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~Kp~~~~Ks~~-r~~L~~~g~~iv~~IGDq~sDl~g~~ 246 (262)
|++++++|+++ +...+..++++|+ ++.++.+++ ...|+. .|... ++.+.+ +-+.++||+.+|+....
T Consensus 88 G~~v~LaTas~---~~~a~~i~~~lGl---Fd~Vigsd~~~~~kg~--~K~~~l~~~l~~---~~~~yvGDS~~Dlp~~~ 156 (479)
T PRK08238 88 GRKLVLATASD---ERLAQAVAAHLGL---FDGVFASDGTTNLKGA--AKAAALVEAFGE---RGFDYAGNSAADLPVWA 156 (479)
T ss_pred CCEEEEEeCCC---HHHHHHHHHHcCC---CCEEEeCCCccccCCc--hHHHHHHHHhCc---cCeeEecCCHHHHHHHH
Confidence 99999999999 7777788888897 344555543 344432 23222 222322 32478999999999876
Q ss_pred ccccEE
Q 024820 247 KAERSF 252 (262)
Q Consensus 247 ~g~r~f 252 (262)
...+.+
T Consensus 157 ~A~~av 162 (479)
T PRK08238 157 AARRAI 162 (479)
T ss_pred hCCCeE
Confidence 333333
No 91
>PRK11590 hypothetical protein; Provisional
Probab=98.73 E-value=1.7e-07 Score=81.03 Aligned_cols=103 Identities=17% Similarity=0.079 Sum_probs=65.4
Q ss_pred CCCChHHHHHH-HHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCC--CCCCC--CchhhhHHHHHhhhh
Q 024820 152 APALPASLTFY-KELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGP--SDQGK--PATVYKSEKRLELVN 226 (262)
Q Consensus 152 a~~ipgalell-~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~--~~~~K--p~~~~Ks~~r~~L~~ 226 (262)
..++||+.+++ +.+++.|++++++||++ +..+...+..+|+..-++++-..- ...++ ....+.+++...|.+
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~---~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~ 170 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSP---QPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLER 170 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCc---HHHHHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHHH
Confidence 56799999999 57888999999999999 778888888888522233332110 01122 111233444444432
Q ss_pred ---cCccEEEEECCCcccccccc-ccccEEEeCCC
Q 024820 227 ---EGYRIHGSSGDQWSDLLGFA-KAERSFKLPNP 257 (262)
Q Consensus 227 ---~g~~iv~~IGDq~sDl~g~~-~g~r~fklPNp 257 (262)
......-..||+.+|+.=-. ++..+..=|+|
T Consensus 171 ~~~~~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~~ 205 (211)
T PRK11590 171 KIGTPLRLYSGYSDSKQDNPLLYFCQHRWRVTPRG 205 (211)
T ss_pred HhCCCcceEEEecCCcccHHHHHhCCCCEEECccH
Confidence 24455678999999996544 45555555665
No 92
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.71 E-value=1.6e-07 Score=79.78 Aligned_cols=141 Identities=20% Similarity=0.246 Sum_probs=90.0
Q ss_pred CCceEEEecCCCccCChhHHHHh---cc------------CC-cCCC-------------HHHHHHHHHhcCCCCChHHH
Q 024820 109 GKDAWVFDIDETLLSNLPYYAAH---GF------------GS-EIFN-------------EDAFDEWVDLAKAPALPASL 159 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~~---~~------------~~-~~~~-------------~~~~~~wv~~~~a~~ipgal 159 (262)
..++|+||+|-|++.-.....-+ +. ++ .+|. ..+..+.+...+...-||+.
T Consensus 15 ~~~aVcFDvDSTvi~eEgIdelA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~qv~~~v~~~k~~lT~Gi~ 94 (227)
T KOG1615|consen 15 SADAVCFDVDSTVIQEEGIDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQPLQVQVEQFVIKQKPTLTPGIR 94 (227)
T ss_pred hcCeEEEecCcchhHHhhHHHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhcccHHHHHHHHhcCCCccCCCHH
Confidence 46799999999999864432111 11 11 1221 23344555556778899999
Q ss_pred HHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC---cce-eEeeCCC-------CCCCCchhhhHHHHHhhhh-c
Q 024820 160 TFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD---WKK-LFLRGPS-------DQGKPATVYKSEKRLELVN-E 227 (262)
Q Consensus 160 ell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~---~~~-Lilr~~~-------~~~Kp~~~~Ks~~r~~L~~-~ 227 (262)
+|...|+++|.+++++||-- |....-.=.++|++. |.. +.+..++ ..+..+.--|++....|.+ .
T Consensus 95 eLv~~L~~~~~~v~liSGGF---~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~lrk~~ 171 (227)
T KOG1615|consen 95 ELVSRLHARGTQVYLISGGF---RQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALLRKNY 171 (227)
T ss_pred HHHHHHHHcCCeEEEEcCCh---HHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHHHHhCC
Confidence 99999999999999999987 655555556678875 322 2222221 1111122467666666654 2
Q ss_pred CccEEEEECCCccccccccccccEE
Q 024820 228 GYRIHGSSGDQWSDLLGFAKAERSF 252 (262)
Q Consensus 228 g~~iv~~IGDq~sDl~g~~~g~r~f 252 (262)
.|..+++|||.-+|+.+-+-|.-++
T Consensus 172 ~~~~~~mvGDGatDlea~~pa~afi 196 (227)
T KOG1615|consen 172 NYKTIVMVGDGATDLEAMPPADAFI 196 (227)
T ss_pred ChheeEEecCCccccccCCchhhhh
Confidence 3446899999999999866444333
No 93
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.71 E-value=6.1e-08 Score=89.18 Aligned_cols=116 Identities=17% Similarity=0.079 Sum_probs=79.4
Q ss_pred CCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHH
Q 024820 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~ 188 (262)
.+++||+|+|+||....--. .+..+ -.-.+++||+.++++.|+++|++++++|+++ +..+.+
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e--~g~~~-------------i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~---~~~a~~ 63 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGE--DGIDN-------------LNLSPLHKTLQEKIKTLKKQGFLLALASKND---EDDAKK 63 (320)
T ss_pred CeEEEEEcCCCCCCCCEEcc--CCccc-------------cccCccHHHHHHHHHHHHhCCCEEEEEcCCC---HHHHHH
Confidence 36899999999999752100 00000 0113568999999999999999999999999 678888
Q ss_pred HHHh----cCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECCCccccccccc
Q 024820 189 NLLF----AGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFAK 247 (262)
Q Consensus 189 nL~~----~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~~ 247 (262)
.|++ +|+..++..+..+ .++||.... ...+++ ..+..-+++|||+..|+.+++.
T Consensus 64 ~l~~~~~~~~~~~~f~~~~~~--~~pk~~~i~--~~~~~l-~i~~~~~vfidD~~~d~~~~~~ 121 (320)
T TIGR01686 64 VFERRKDFILQAEDFDARSIN--WGPKSESLR--KIAKKL-NLGTDSFLFIDDNPAERANVKI 121 (320)
T ss_pred HHHhCccccCcHHHeeEEEEe--cCchHHHHH--HHHHHh-CCCcCcEEEECCCHHHHHHHHH
Confidence 8998 7887766655443 223332222 222222 2245679999999999999873
No 94
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=98.68 E-value=6.3e-08 Score=86.47 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=54.7
Q ss_pred ceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHH
Q 024820 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNL 190 (262)
Q Consensus 111 ~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL 190 (262)
++|+||+||||++... ..-.++|++.+.++.|+++|++++|+|||+...++...+.|
T Consensus 2 k~i~~D~DGtl~~~~~-----------------------~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l 58 (257)
T TIGR01458 2 KGVLLDISGVLYISDA-----------------------KSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL 58 (257)
T ss_pred CEEEEeCCCeEEeCCC-----------------------cccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 5899999999997521 01237899999999999999999999999988888899999
Q ss_pred HhcCCCC
Q 024820 191 LFAGYSD 197 (262)
Q Consensus 191 ~~~G~~~ 197 (262)
+++|++.
T Consensus 59 ~~~g~~~ 65 (257)
T TIGR01458 59 QRLGFDI 65 (257)
T ss_pred HHcCCCC
Confidence 9999974
No 95
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=98.67 E-value=6e-08 Score=87.16 Aligned_cols=103 Identities=20% Similarity=0.267 Sum_probs=74.8
Q ss_pred CCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHH
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~ 187 (262)
++.++++||+||||... ..++||+.+++++|+++|.+++|+||.+...++...
T Consensus 6 ~~y~~~l~DlDGvl~~G---------------------------~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~ 58 (269)
T COG0647 6 DKYDGFLFDLDGVLYRG---------------------------NEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVA 58 (269)
T ss_pred hhcCEEEEcCcCceEeC---------------------------CccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 56889999999999874 578999999999999999999999999999999888
Q ss_pred HHHHh-cCCCCcceeEeeCC----------CCCCCCchhhhHHHHHhhhhcCccEEEEECC
Q 024820 188 KNLLF-AGYSDWKKLFLRGP----------SDQGKPATVYKSEKRLELVNEGYRIHGSSGD 237 (262)
Q Consensus 188 ~nL~~-~G~~~~~~Lilr~~----------~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGD 237 (262)
+.|++ .|.+...+-++.+. ....|-....-.+.+..|+..|+.++....+
T Consensus 59 ~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~kv~viG~~~l~~~l~~~G~~~~~~~~~ 119 (269)
T COG0647 59 ARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYVIGEEGLKEELEGAGFELVDEEEP 119 (269)
T ss_pred HHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCCEEEEECCcchHHHHHhCCcEEeccCCC
Confidence 99999 45544333333331 1112222334466777888878775443333
No 96
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.67 E-value=9.9e-08 Score=86.44 Aligned_cols=73 Identities=22% Similarity=0.270 Sum_probs=60.9
Q ss_pred CCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHCCCeEEEEccCccccHHHH
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPA-LPASLTFYKELKQLGFKIFLLTGRNEFQRNTT 186 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~-ipgalell~~Lk~~GikI~~vTgR~e~~r~~T 186 (262)
.-++.|+||+||||+.... .... -|++.++|.+|+++|++++++|+++ |...
T Consensus 126 ~~~~~i~~D~D~TL~~~~~------------------------~v~irdp~V~EtL~eLkekGikLaIvTNg~---Re~v 178 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEE------------------------PVRIRDPFVYDSLDELKERGCVLVLWSYGN---REHV 178 (303)
T ss_pred eeccEEEEecCCCccCCCC------------------------ccccCChhHHHHHHHHHHCCCEEEEEcCCC---hHHH
Confidence 3577999999999998621 2223 3899999999999999999999988 7777
Q ss_pred HHHHHhcCCCCcceeEeeCCC
Q 024820 187 EKNLLFAGYSDWKKLFLRGPS 207 (262)
Q Consensus 187 ~~nL~~~G~~~~~~Lilr~~~ 207 (262)
...|+++|+..+++.++.+++
T Consensus 179 ~~~Le~lgL~~yFDvII~~g~ 199 (303)
T PHA03398 179 VHSLKETKLEGYFDIIICGGR 199 (303)
T ss_pred HHHHHHcCCCccccEEEECCC
Confidence 899999999988887777654
No 97
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.66 E-value=7.1e-08 Score=82.16 Aligned_cols=88 Identities=20% Similarity=0.281 Sum_probs=59.5
Q ss_pred cCCCCChHHHHHHHHHHHCCCeEEEEccCccc----cHHHHHHHHHhc--CCCCcceeEeeCCCCCCCCchhhhHHHHHh
Q 024820 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEF----QRNTTEKNLLFA--GYSDWKKLFLRGPSDQGKPATVYKSEKRLE 223 (262)
Q Consensus 150 ~~a~~ipgalell~~Lk~~GikI~~vTgR~e~----~r~~T~~nL~~~--G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~ 223 (262)
...+|+||+.|.+++|.+.|+.+++||+|+.. ..+.|.+||+++ +++ ++++++.++ | ..
T Consensus 70 ~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~-~~~~~~~~~----K------~~---- 134 (191)
T PF06941_consen 70 SNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIP-YDNLIFTGD----K------TL---- 134 (191)
T ss_dssp TT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHH-HCCEEEESS----G------GG----
T ss_pred cCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCc-hheEEEecC----C------Ce----
Confidence 35799999999999999999999999999865 578999999998 333 467777632 1 10
Q ss_pred hhhcCccEEEEECCCcccccccc-ccccEEEeCCC
Q 024820 224 LVNEGYRIHGSSGDQWSDLLGFA-KAERSFKLPNP 257 (262)
Q Consensus 224 L~~~g~~iv~~IGDq~sDl~g~~-~g~r~fklPNp 257 (262)
+ +.. +.|+|++.-+.... .|..++.+..|
T Consensus 135 v---~~D--vlIDD~~~n~~~~~~~g~~~iLfd~p 164 (191)
T PF06941_consen 135 V---GGD--VLIDDRPHNLEQFANAGIPVILFDQP 164 (191)
T ss_dssp C-----S--EEEESSSHHHSS-SSESSEEEEE--G
T ss_pred E---ecc--EEecCChHHHHhccCCCceEEEEcCC
Confidence 1 123 56999888776543 57777777654
No 98
>PRK10444 UMP phosphatase; Provisional
Probab=98.64 E-value=1.2e-07 Score=84.45 Aligned_cols=68 Identities=21% Similarity=0.314 Sum_probs=57.7
Q ss_pred ceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHH
Q 024820 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNL 190 (262)
Q Consensus 111 ~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL 190 (262)
+.|+||+||||++. ..++|++.++++.|+++|.+++|+|||+...+....+.|
T Consensus 2 ~~v~~DlDGtL~~~---------------------------~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l 54 (248)
T PRK10444 2 KNVICDIDGVLMHD---------------------------NVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRF 54 (248)
T ss_pred cEEEEeCCCceEeC---------------------------CeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 58999999999985 256899999999999999999999999988888999999
Q ss_pred HhcCCCCcceeEeeC
Q 024820 191 LFAGYSDWKKLFLRG 205 (262)
Q Consensus 191 ~~~G~~~~~~Lilr~ 205 (262)
+++|++.-.+-++.+
T Consensus 55 ~~~G~~~~~~~i~ts 69 (248)
T PRK10444 55 ATAGVDVPDSVFYTS 69 (248)
T ss_pred HHcCCCCCHhhEecH
Confidence 999996433334443
No 99
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.63 E-value=4.8e-07 Score=78.77 Aligned_cols=98 Identities=18% Similarity=0.060 Sum_probs=67.0
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEee-CCC-CCCC-----CchhhhHHHHHhh
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLR-GPS-DQGK-----PATVYKSEKRLEL 224 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr-~~~-~~~K-----p~~~~Ks~~r~~L 224 (262)
.+..||+.++++.++++|++++++||-. ...+....+++|+..+....+. .++ ..++ -....|.....++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~---~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~ 152 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGF---TFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALREL 152 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCCh---HHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHH
Confidence 7889999999999999999999999999 5677778888999864432222 111 1221 1123565555444
Q ss_pred h-hcCcc--EEEEECCCcccccccc-ccccEE
Q 024820 225 V-NEGYR--IHGSSGDQWSDLLGFA-KAERSF 252 (262)
Q Consensus 225 ~-~~g~~--iv~~IGDq~sDl~g~~-~g~r~f 252 (262)
. +.|.+ .+..+||+.+|+.--. +|.++.
T Consensus 153 ~~~~g~~~~~~~a~gDs~nDlpml~~ag~~ia 184 (212)
T COG0560 153 AAELGIPLEETVAYGDSANDLPMLEAAGLPIA 184 (212)
T ss_pred HHHcCCCHHHeEEEcCchhhHHHHHhCCCCeE
Confidence 3 44666 6889999999996433 344433
No 100
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.56 E-value=1.5e-07 Score=84.84 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=54.4
Q ss_pred CceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHH
Q 024820 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~n 189 (262)
.++|+|||||||++. ..++||+.+++++|+++|++++++|||+...+....+.
T Consensus 2 ~~~~~~D~DGtl~~~---------------------------~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~ 54 (279)
T TIGR01452 2 AQGFIFDCDGVLWLG---------------------------ERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALK 54 (279)
T ss_pred ccEEEEeCCCceEcC---------------------------CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHH
Confidence 468999999999874 34788999999999999999999999998878888899
Q ss_pred HHhcCCCC
Q 024820 190 LLFAGYSD 197 (262)
Q Consensus 190 L~~~G~~~ 197 (262)
|+++|+..
T Consensus 55 l~~~G~~~ 62 (279)
T TIGR01452 55 FARLGFNG 62 (279)
T ss_pred HHHcCCCC
Confidence 99999975
No 101
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=98.52 E-value=5.7e-07 Score=78.74 Aligned_cols=108 Identities=9% Similarity=-0.021 Sum_probs=71.3
Q ss_pred HHHHHHhc--CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhc---CCCCcceeEeeCCCCCCCCchhhh
Q 024820 143 FDEWVDLA--KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFA---GYSDWKKLFLRGPSDQGKPATVYK 217 (262)
Q Consensus 143 ~~~wv~~~--~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~---G~~~~~~Lilr~~~~~~Kp~~~~K 217 (262)
|.+....+ ..+++||+.+++++|+++|++++++||.+ +......+... ++..+++.++.. ....||.+..-
T Consensus 83 w~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s---~~~~~~~~~~~~~~~L~~~f~~~fd~-~~g~KP~p~~y 158 (220)
T TIGR01691 83 WRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGS---VPAQKLLFGHSDAGNLTPYFSGYFDT-TVGLKTEAQSY 158 (220)
T ss_pred HHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHhhccccchhhhcceEEEe-CcccCCCHHHH
Confidence 44444432 36799999999999999999999999998 65555666654 444434333322 22356655322
Q ss_pred HHHHHhhhhcCccEEEEECCCcccccccc-ccccEEEeC
Q 024820 218 SEKRLELVNEGYRIHGSSGDQWSDLLGFA-KAERSFKLP 255 (262)
Q Consensus 218 s~~r~~L~~~g~~iv~~IGDq~sDl~g~~-~g~r~fklP 255 (262)
....+++.- ...-+++|||+..|+.+|+ +|++++.+-
T Consensus 159 ~~i~~~lgv-~p~e~lfVgDs~~Di~AA~~AG~~ti~v~ 196 (220)
T TIGR01691 159 VKIAGQLGS-PPREILFLSDIINELDAARKAGLHTGQLV 196 (220)
T ss_pred HHHHHHhCc-ChhHEEEEeCCHHHHHHHHHcCCEEEEEE
Confidence 222222211 1235889999999999998 899988773
No 102
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=98.46 E-value=4.2e-07 Score=80.78 Aligned_cols=61 Identities=16% Similarity=0.276 Sum_probs=52.4
Q ss_pred ceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHH
Q 024820 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNL 190 (262)
Q Consensus 111 ~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL 190 (262)
+.++||+||||++. ..++|++.+++++|+++|++++|+||++...+....+.|
T Consensus 2 ~~~~~D~DGtl~~~---------------------------~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l 54 (249)
T TIGR01457 2 KGYLIDLDGTMYKG---------------------------KERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEML 54 (249)
T ss_pred CEEEEeCCCceEcC---------------------------CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 58999999999985 245789999999999999999999986655588889999
Q ss_pred HhcCCCCc
Q 024820 191 LFAGYSDW 198 (262)
Q Consensus 191 ~~~G~~~~ 198 (262)
+++|++..
T Consensus 55 ~~~g~~~~ 62 (249)
T TIGR01457 55 ASFDIPAT 62 (249)
T ss_pred HHcCCCCC
Confidence 99999753
No 103
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=98.45 E-value=3.3e-06 Score=74.54 Aligned_cols=94 Identities=21% Similarity=0.225 Sum_probs=64.8
Q ss_pred cCCCCChHHHHHHHHH--HHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeC--------------CCCC---C
Q 024820 150 AKAPALPASLTFYKEL--KQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRG--------------PSDQ---G 210 (262)
Q Consensus 150 ~~a~~ipgalell~~L--k~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~--------------~~~~---~ 210 (262)
...|..||++++++.+ ++.|+.++++|.-. --..+.+|+++|+...++-+... -..+ .
T Consensus 68 ~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaN---s~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~ 144 (234)
T PF06888_consen 68 RSIPIDPGMKELLRFLAKNQRGFDLIIISDAN---SFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSL 144 (234)
T ss_pred HcCCCCccHHHHHHHHHhcCCCceEEEEeCCc---HhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCc
Confidence 4689999999999999 46899999999988 66788999999997644223222 1111 1
Q ss_pred CCchhhhHHHHHhhhhc----C--ccEEEEECCCcccccccc
Q 024820 211 KPATVYKSEKRLELVNE----G--YRIHGSSGDQWSDLLGFA 246 (262)
Q Consensus 211 Kp~~~~Ks~~r~~L~~~----g--~~iv~~IGDq~sDl~g~~ 246 (262)
.|.--=|.....++... | |+-++||||.-+|+=.+.
T Consensus 145 C~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~ 186 (234)
T PF06888_consen 145 CPPNMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPAL 186 (234)
T ss_pred CCCccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCccc
Confidence 12112343443444332 4 778999999999996654
No 104
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.44 E-value=1.1e-06 Score=73.51 Aligned_cols=85 Identities=24% Similarity=0.212 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCC------CCCch-h--hhHHHHHhh--
Q 024820 156 PASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQ------GKPAT-V--YKSEKRLEL-- 224 (262)
Q Consensus 156 pgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~------~Kp~~-~--~Ks~~r~~L-- 224 (262)
|++.++++.+++.|++++++|+.+ +..+...++..|++... ++-...... ++..+ . .|....+++
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~---~~~i~~~~~~~~i~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~ 167 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSP---DEIIEPIAERLGIDDDN-VIGNELFDNGGGIFTGRITGSNCGGKAEALKELYI 167 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEE---HHHHHHHHHHTTSSEGG-EEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCc---HHHHHHHHHHcCCCceE-EEEEeeeecccceeeeeECCCCCCcHHHHHHHHHH
Confidence 555599999999999999999998 77888888899998622 221111100 00000 1 265655555
Q ss_pred -h--hcCccEEEEECCCcccccc
Q 024820 225 -V--NEGYRIHGSSGDQWSDLLG 244 (262)
Q Consensus 225 -~--~~g~~iv~~IGDq~sDl~g 244 (262)
. ..+...+++|||+.+|+..
T Consensus 168 ~~~~~~~~~~~~~iGDs~~D~~~ 190 (192)
T PF12710_consen 168 RDEEDIDPDRVIAIGDSINDLPM 190 (192)
T ss_dssp HHHHTHTCCEEEEEESSGGGHHH
T ss_pred HhhcCCCCCeEEEEECCHHHHHH
Confidence 1 2356789999999999864
No 105
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=98.43 E-value=5.4e-06 Score=74.92 Aligned_cols=101 Identities=18% Similarity=0.097 Sum_probs=68.0
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeE------eeCCC-CCCCCch-
Q 024820 143 FDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLF------LRGPS-DQGKPAT- 214 (262)
Q Consensus 143 ~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Li------lr~~~-~~~Kp~~- 214 (262)
..+++++...++.||+.+|++.|+++|++++++|+-. +...+..|+++|+...+..+ +..++ ..+++.+
T Consensus 111 i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~---~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~ 187 (277)
T TIGR01544 111 IKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGI---GNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPL 187 (277)
T ss_pred HHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCc---HHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCc
Confidence 3344444578999999999999999999999999998 88888999999985322222 33333 2344433
Q ss_pred ---hhhHHH-HH----hhh-hcCccEEEEECCCcccccccc
Q 024820 215 ---VYKSEK-RL----ELV-NEGYRIHGSSGDQWSDLLGFA 246 (262)
Q Consensus 215 ---~~Ks~~-r~----~L~-~~g~~iv~~IGDq~sDl~g~~ 246 (262)
..|.+. .. .+. .....-+++|||+.+|+..+.
T Consensus 188 i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~ 228 (277)
T TIGR01544 188 IHTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQGDLRMAD 228 (277)
T ss_pred ccccccHHHHHHHHHHHhCccCCcceEEEECcChhhhhHhc
Confidence 233221 11 111 023456889999999999876
No 106
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=98.42 E-value=1.6e-06 Score=73.61 Aligned_cols=124 Identities=19% Similarity=0.210 Sum_probs=82.7
Q ss_pred CceEEEecCCCccCChh-HHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccc-------
Q 024820 110 KDAWVFDIDETLLSNLP-YYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEF------- 181 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~-y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~------- 181 (262)
.+++++|-||||..-.+ |. ..++ +-...||+.+.+..|++.|++++++||-+--
T Consensus 5 ~k~lflDRDGtin~d~~~yv------------~~~~------~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~ 66 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYV------------DSLD------DFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTE 66 (181)
T ss_pred CcEEEEcCCCceecCCCccc------------CcHH------HhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccH
Confidence 78999999999997544 22 1222 2367899999999999999999999995421
Q ss_pred -----cHHHHHHHHHhcCCCCcceeEeeCCC-----CCCCCchhhhHHHHHhhhhc--CccEEEEECCCcccccccc-cc
Q 024820 182 -----QRNTTEKNLLFAGYSDWKKLFLRGPS-----DQGKPATVYKSEKRLELVNE--GYRIHGSSGDQWSDLLGFA-KA 248 (262)
Q Consensus 182 -----~r~~T~~nL~~~G~~~~~~Lilr~~~-----~~~Kp~~~~Ks~~r~~L~~~--g~~iv~~IGDq~sDl~g~~-~g 248 (262)
.-+.-.+.|++.|... +.++..+.. +-+||.+- .....+.+. ......+|||..+|+++|. +|
T Consensus 67 ~~f~~~~~~m~~~l~~~gv~i-d~i~~Cph~p~~~c~cRKP~~g---m~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~g 142 (181)
T COG0241 67 ADFDKLHNKMLKILASQGVKI-DGILYCPHHPEDNCDCRKPKPG---MLLSALKEYNIDLSRSYVVGDRLTDLQAAENAG 142 (181)
T ss_pred HHHHHHHHHHHHHHHHcCCcc-ceEEECCCCCCCCCcccCCChH---HHHHHHHHhCCCccceEEecCcHHHHHHHHHCC
Confidence 1223456677888753 666776643 23555331 222222222 2345789999999999987 67
Q ss_pred ccEEEeC
Q 024820 249 ERSFKLP 255 (262)
Q Consensus 249 ~r~fklP 255 (262)
.+.+.+=
T Consensus 143 i~~~~~~ 149 (181)
T COG0241 143 IKGVLVL 149 (181)
T ss_pred CCceEEE
Confidence 7666553
No 107
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.41 E-value=9e-07 Score=76.73 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=46.9
Q ss_pred CceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHH
Q 024820 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~n 189 (262)
.+.+++|+||||++.. ...-|.+.+.+++|+++|++++++|||+ .......
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~G~~~~iaTGR~---~~~~~~~ 53 (230)
T PRK01158 3 IKAIAIDIDGTITDKD--------------------------RRLSLKAVEAIRKAEKLGIPVILATGNV---LCFARAA 53 (230)
T ss_pred eeEEEEecCCCcCCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEEcCCc---hHHHHHH
Confidence 4689999999999852 1234678899999999999999999999 5555566
Q ss_pred HHhcCCCC
Q 024820 190 LLFAGYSD 197 (262)
Q Consensus 190 L~~~G~~~ 197 (262)
++.+|++.
T Consensus 54 ~~~l~~~~ 61 (230)
T PRK01158 54 AKLIGTSG 61 (230)
T ss_pred HHHhCCCC
Confidence 67778764
No 108
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.40 E-value=8.8e-07 Score=78.64 Aligned_cols=59 Identities=24% Similarity=0.365 Sum_probs=48.5
Q ss_pred CceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHH
Q 024820 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~n 189 (262)
.+.|++||||||+++. ...-|...+.+++|+++|++++++|||+ .......
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~ai~~~~~~G~~~~iaTGR~---~~~~~~~ 53 (272)
T PRK10530 3 YRVIALDLDGTLLTPK--------------------------KTILPESLEALARAREAGYKVIIVTGRH---HVAIHPF 53 (272)
T ss_pred ccEEEEeCCCceECCC--------------------------CccCHHHHHHHHHHHHCCCEEEEEcCCC---hHHHHHH
Confidence 5789999999999862 2344577899999999999999999999 5566777
Q ss_pred HHhcCCCC
Q 024820 190 LLFAGYSD 197 (262)
Q Consensus 190 L~~~G~~~ 197 (262)
++++|+..
T Consensus 54 ~~~l~~~~ 61 (272)
T PRK10530 54 YQALALDT 61 (272)
T ss_pred HHhcCCCC
Confidence 88888864
No 109
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.39 E-value=2.4e-07 Score=76.26 Aligned_cols=109 Identities=25% Similarity=0.275 Sum_probs=72.1
Q ss_pred CCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHH
Q 024820 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~ 188 (262)
..+-+|||+||||.|..-|+..++-.-+.||.. .| --++.|.+.|++++++|||. -...++
T Consensus 7 ~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~--------------DG--~Gik~l~~~Gi~vAIITGr~---s~ive~ 67 (170)
T COG1778 7 NIKLLILDVDGVLTDGKLYYDENGEEIKAFNVR--------------DG--HGIKLLLKSGIKVAIITGRD---SPIVEK 67 (170)
T ss_pred hceEEEEeccceeecCeEEEcCCCceeeeeecc--------------Cc--HHHHHHHHcCCeEEEEeCCC---CHHHHH
Confidence 456799999999999987776554433445421 11 12456789999999999999 566777
Q ss_pred HHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECCCccccccc
Q 024820 189 NLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGF 245 (262)
Q Consensus 189 nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~ 245 (262)
-.+.+|++. +++...+ |- ..++ +.++++ ..++..+++|||.++|+..-
T Consensus 68 Ra~~LGI~~---~~qG~~d---K~-~a~~-~L~~~~-~l~~e~~ayiGDD~~Dlpvm 115 (170)
T COG1778 68 RAKDLGIKH---LYQGISD---KL-AAFE-ELLKKL-NLDPEEVAYVGDDLVDLPVM 115 (170)
T ss_pred HHHHcCCce---eeechHh---HH-HHHH-HHHHHh-CCCHHHhhhhcCccccHHHH
Confidence 778889964 4443221 10 1122 333333 23667899999999999653
No 110
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.39 E-value=1.1e-06 Score=78.60 Aligned_cols=60 Identities=20% Similarity=0.178 Sum_probs=49.6
Q ss_pred CceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHH
Q 024820 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~n 189 (262)
.+.+++||||||+++. ...-+..++.+++|+++|++++++|||+ .......
T Consensus 2 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~ai~~l~~~G~~~~iaTGR~---~~~~~~~ 52 (272)
T PRK15126 2 ARLAAFDMDGTLLMPD--------------------------HHLGEKTLSTLARLRERDITLTFATGRH---VLEMQHI 52 (272)
T ss_pred ccEEEEeCCCcCcCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEECCCC---HHHHHHH
Confidence 4689999999999852 2345678899999999999999999999 6677778
Q ss_pred HHhcCCCCc
Q 024820 190 LLFAGYSDW 198 (262)
Q Consensus 190 L~~~G~~~~ 198 (262)
++++|+..+
T Consensus 53 ~~~l~~~~~ 61 (272)
T PRK15126 53 LGALSLDAY 61 (272)
T ss_pred HHHcCCCCc
Confidence 888888653
No 111
>PRK10976 putative hydrolase; Provisional
Probab=98.38 E-value=1.1e-06 Score=78.16 Aligned_cols=59 Identities=22% Similarity=0.132 Sum_probs=48.1
Q ss_pred CceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHH
Q 024820 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~n 189 (262)
.+.|++||||||+++. ...-|...+.+++|+++|++++++|||+ .......
T Consensus 2 ikli~~DlDGTLl~~~--------------------------~~is~~~~~ai~~l~~~G~~~~iaTGR~---~~~~~~~ 52 (266)
T PRK10976 2 YQVVASDLDGTLLSPD--------------------------HTLSPYAKETLKLLTARGIHFVFATGRH---HVDVGQI 52 (266)
T ss_pred ceEEEEeCCCCCcCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEEcCCC---hHHHHHH
Confidence 4689999999999862 1234678899999999999999999999 5566677
Q ss_pred HHhcCCCC
Q 024820 190 LLFAGYSD 197 (262)
Q Consensus 190 L~~~G~~~ 197 (262)
++.+|+..
T Consensus 53 ~~~l~~~~ 60 (266)
T PRK10976 53 RDNLEIKS 60 (266)
T ss_pred HHhcCCCC
Confidence 78888864
No 112
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.37 E-value=1.2e-06 Score=78.63 Aligned_cols=60 Identities=23% Similarity=0.161 Sum_probs=50.2
Q ss_pred CceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHH
Q 024820 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~n 189 (262)
.+.|++||||||+++. ....+++.+.+++|+++|++++++|||+ .......
T Consensus 4 ~kli~~DlDGTLl~~~--------------------------~~~~~~~~~ai~~l~~~Gi~~~iaTgR~---~~~~~~~ 54 (273)
T PRK00192 4 KLLVFTDLDGTLLDHH--------------------------TYSYEPAKPALKALKEKGIPVIPCTSKT---AAEVEVL 54 (273)
T ss_pred ceEEEEcCcccCcCCC--------------------------CcCcHHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHH
Confidence 5689999999999852 2345778999999999999999999999 6777788
Q ss_pred HHhcCCCCc
Q 024820 190 LLFAGYSDW 198 (262)
Q Consensus 190 L~~~G~~~~ 198 (262)
++++|+..+
T Consensus 55 ~~~l~l~~~ 63 (273)
T PRK00192 55 RKELGLEDP 63 (273)
T ss_pred HHHcCCCCC
Confidence 888998653
No 113
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.36 E-value=1.9e-06 Score=76.73 Aligned_cols=58 Identities=22% Similarity=0.177 Sum_probs=47.7
Q ss_pred CceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHH
Q 024820 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~n 189 (262)
.+.|++||||||+++. ...-|...+.+++|+++|++++++|||+ .......
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~ai~~l~~~G~~~~iaTGR~---~~~~~~~ 53 (270)
T PRK10513 3 IKLIAIDMDGTLLLPD--------------------------HTISPAVKQAIAAARAKGVNVVLTTGRP---YAGVHRY 53 (270)
T ss_pred eEEEEEecCCcCcCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEecCCC---hHHHHHH
Confidence 5789999999999852 1234577899999999999999999999 6666777
Q ss_pred HHhcCCC
Q 024820 190 LLFAGYS 196 (262)
Q Consensus 190 L~~~G~~ 196 (262)
++++|+.
T Consensus 54 ~~~l~~~ 60 (270)
T PRK10513 54 LKELHME 60 (270)
T ss_pred HHHhCCC
Confidence 8888875
No 114
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.33 E-value=1.7e-06 Score=76.38 Aligned_cols=102 Identities=17% Similarity=0.157 Sum_probs=75.6
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeC-CCCCCCCchh-hh-HHHHHhhhhcC
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRG-PSDQGKPATV-YK-SEKRLELVNEG 228 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~-~~~~~Kp~~~-~K-s~~r~~L~~~g 228 (262)
-....++.+++++|+++|..+.++|+-+...+ .-|...|+..+++.++-+ ...-.||++. |. +..+.+++
T Consensus 112 ~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~----~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~--- 184 (237)
T KOG3085|consen 112 WKYLDGMQELLQKLRKKGTILGIISNFDDRLR----LLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVK--- 184 (237)
T ss_pred ceeccHHHHHHHHHHhCCeEEEEecCCcHHHH----HHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCC---
Confidence 35678999999999999999999999985544 567778887666655444 4456778774 44 22232222
Q ss_pred ccEEEEECCCc-ccccccc-ccccEEEeCCCCCC
Q 024820 229 YRIHGSSGDQW-SDLLGFA-KAERSFKLPNPMYY 260 (262)
Q Consensus 229 ~~iv~~IGDq~-sDl~g~~-~g~r~fklPNp~Y~ 260 (262)
...++.|||.. +|++||. +|.+++.+-|.++-
T Consensus 185 Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~~~ 218 (237)
T KOG3085|consen 185 PEECVHIGDLLENDYEGARNLGWHAILVDNSITA 218 (237)
T ss_pred hHHeEEecCccccccHhHHHcCCEEEEEccccch
Confidence 45799999976 4899998 89999999887653
No 115
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.32 E-value=1.7e-06 Score=74.60 Aligned_cols=57 Identities=19% Similarity=0.196 Sum_probs=45.1
Q ss_pred ceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHH
Q 024820 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNL 190 (262)
Q Consensus 111 ~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL 190 (262)
+.|++||||||+++. ...-|.+.+.+++|+++|++++++|||+ .......+
T Consensus 2 k~v~~DlDGTLl~~~--------------------------~~i~~~~~~~i~~l~~~g~~~~~~TGR~---~~~~~~~~ 52 (215)
T TIGR01487 2 KLVAIDIDGTLTEPN--------------------------RMISERAIEAIRKAEKKGIPVSLVTGNT---VPFARALA 52 (215)
T ss_pred cEEEEecCCCcCCCC--------------------------cccCHHHHHHHHHHHHCCCEEEEEcCCc---chhHHHHH
Confidence 589999999999852 2344688999999999999999999999 44455556
Q ss_pred HhcCCC
Q 024820 191 LFAGYS 196 (262)
Q Consensus 191 ~~~G~~ 196 (262)
+.+|+.
T Consensus 53 ~~l~~~ 58 (215)
T TIGR01487 53 VLIGTS 58 (215)
T ss_pred HHhCCC
Confidence 666765
No 116
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.31 E-value=2e-06 Score=75.33 Aligned_cols=56 Identities=27% Similarity=0.271 Sum_probs=46.7
Q ss_pred eEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHH
Q 024820 112 AWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLL 191 (262)
Q Consensus 112 aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~ 191 (262)
.|+|||||||++.. ...|++.+.+++|+++|++++++|||+ +......++
T Consensus 1 li~~DlDGTLl~~~---------------------------~~~~~~~~ai~~l~~~G~~~vi~TgR~---~~~~~~~~~ 50 (225)
T TIGR02461 1 VIFTDLDGTLLPPG---------------------------YEPGPAREALEELKDLGFPIVFVSSKT---RAEQEYYRE 50 (225)
T ss_pred CEEEeCCCCCcCCC---------------------------CCchHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHH
Confidence 37899999999841 134578999999999999999999999 667777888
Q ss_pred hcCCCC
Q 024820 192 FAGYSD 197 (262)
Q Consensus 192 ~~G~~~ 197 (262)
++|+..
T Consensus 51 ~lg~~~ 56 (225)
T TIGR02461 51 ELGVEP 56 (225)
T ss_pred HcCCCC
Confidence 899854
No 117
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.30 E-value=2.1e-06 Score=74.24 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=46.0
Q ss_pred EEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHh
Q 024820 113 WVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF 192 (262)
Q Consensus 113 iIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~ 192 (262)
|++||||||+++. ....+.+.+.++.|+++|++++++|||+ .......++.
T Consensus 2 i~~DlDGTLL~~~--------------------------~~~~~~~~~~l~~l~~~gi~~~i~TgR~---~~~~~~~~~~ 52 (221)
T TIGR02463 2 VFSDLDGTLLDSH--------------------------SYDWQPAAPWLTRLQEAGIPVILCTSKT---AAEVEYLQKA 52 (221)
T ss_pred EEEeCCCCCcCCC--------------------------CCCcHHHHHHHHHHHHCCCeEEEEcCCC---HHHHHHHHHH
Confidence 7899999999862 1234457899999999999999999999 7777888888
Q ss_pred cCCC
Q 024820 193 AGYS 196 (262)
Q Consensus 193 ~G~~ 196 (262)
+|+.
T Consensus 53 l~~~ 56 (221)
T TIGR02463 53 LGLT 56 (221)
T ss_pred cCCC
Confidence 8876
No 118
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.29 E-value=1.8e-06 Score=74.57 Aligned_cols=56 Identities=21% Similarity=0.254 Sum_probs=43.4
Q ss_pred EEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHh
Q 024820 113 WVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF 192 (262)
Q Consensus 113 iIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~ 192 (262)
|+|||||||+++. ...-|...+.+++|+++|++++++|||+ .....+-++.
T Consensus 1 i~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~Gi~~~~aTGR~---~~~~~~~~~~ 51 (225)
T TIGR01482 1 IASDIDGTLTDPN--------------------------RAINESALEAIRKAESVGIPVVLVTGNS---VQFARALAKL 51 (225)
T ss_pred CeEeccCccCCCC--------------------------cccCHHHHHHHHHHHHCCCEEEEEcCCc---hHHHHHHHHH
Confidence 5899999999863 1233567888999999999999999999 5555556667
Q ss_pred cCCCC
Q 024820 193 AGYSD 197 (262)
Q Consensus 193 ~G~~~ 197 (262)
+|++.
T Consensus 52 l~~~~ 56 (225)
T TIGR01482 52 IGTPD 56 (225)
T ss_pred hCCCC
Confidence 77643
No 119
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.28 E-value=1e-05 Score=70.16 Aligned_cols=103 Identities=17% Similarity=0.099 Sum_probs=62.8
Q ss_pred CCCChHHHHHHH-HHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC--CCCCC--chhhhHHHHHhhhh
Q 024820 152 APALPASLTFYK-ELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS--DQGKP--ATVYKSEKRLELVN 226 (262)
Q Consensus 152 a~~ipgalell~-~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~--~~~Kp--~~~~Ks~~r~~L~~ 226 (262)
..++||+.++++ .++++|++++++||++ +..++...+..|+-.-++++-..-. +.++. ...+.+++...|++
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~---~~~~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~ 169 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSP---QPLVEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHEKVAQLEQ 169 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCc---HHHHHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChHHHHHHHH
Confidence 367999999996 7888999999999999 6666777767555222343322100 11221 11233333333322
Q ss_pred ---cCccEEEEECCCcccccccc-ccccEEEeCCC
Q 024820 227 ---EGYRIHGSSGDQWSDLLGFA-KAERSFKLPNP 257 (262)
Q Consensus 227 ---~g~~iv~~IGDq~sDl~g~~-~g~r~fklPNp 257 (262)
..+.+.-..||+.+|+.=-. ++..+..=|+|
T Consensus 170 ~~~~~~~~~~aYsDS~~D~pmL~~a~~~~~Vnp~~ 204 (210)
T TIGR01545 170 KIGSPLKLYSGYSDSKQDNPLLAFCEHRWRVSKRG 204 (210)
T ss_pred HhCCChhheEEecCCcccHHHHHhCCCcEEECcch
Confidence 25566778999999996533 45555555654
No 120
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.28 E-value=2.6e-06 Score=73.46 Aligned_cols=56 Identities=30% Similarity=0.432 Sum_probs=47.9
Q ss_pred EEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHh
Q 024820 113 WVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF 192 (262)
Q Consensus 113 iIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~ 192 (262)
|++||||||++.. ...-|.+++.++.|+++|+++++.|||+ .......+..
T Consensus 1 i~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~g~~~~i~TGR~---~~~~~~~~~~ 51 (254)
T PF08282_consen 1 IFSDLDGTLLNSD--------------------------GKISPETIEALKELQEKGIKLVIATGRS---YSSIKRLLKE 51 (254)
T ss_dssp EEEECCTTTCSTT--------------------------SSSCHHHHHHHHHHHHTTCEEEEECSST---HHHHHHHHHH
T ss_pred cEEEECCceecCC--------------------------CeeCHHHHHHHHhhcccceEEEEEccCc---cccccccccc
Confidence 6899999999852 2245889999999999999999999999 7778888888
Q ss_pred cCCCC
Q 024820 193 AGYSD 197 (262)
Q Consensus 193 ~G~~~ 197 (262)
.++..
T Consensus 52 ~~~~~ 56 (254)
T PF08282_consen 52 LGIDD 56 (254)
T ss_dssp TTHCS
T ss_pred ccchh
Confidence 88873
No 121
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.26 E-value=2.9e-06 Score=76.03 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=47.9
Q ss_pred CCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHH
Q 024820 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~ 188 (262)
.++.|++||||||++.. ....+.+.+.+++|+++|++++++|||+ ......
T Consensus 6 ~~~lI~~DlDGTLL~~~--------------------------~~i~~~~~~ai~~l~~~Gi~~viaTGR~---~~~i~~ 56 (271)
T PRK03669 6 DPLLIFTDLDGTLLDSH--------------------------TYDWQPAAPWLTRLREAQVPVILCSSKT---AAEMLP 56 (271)
T ss_pred CCeEEEEeCccCCcCCC--------------------------CcCcHHHHHHHHHHHHcCCeEEEEcCCC---HHHHHH
Confidence 46789999999999852 1223567889999999999999999999 666677
Q ss_pred HHHhcCCC
Q 024820 189 NLLFAGYS 196 (262)
Q Consensus 189 nL~~~G~~ 196 (262)
.++.+|++
T Consensus 57 ~~~~l~~~ 64 (271)
T PRK03669 57 LQQTLGLQ 64 (271)
T ss_pred HHHHhCCC
Confidence 77888885
No 122
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.26 E-value=3e-06 Score=75.30 Aligned_cols=59 Identities=27% Similarity=0.313 Sum_probs=50.3
Q ss_pred CceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHH
Q 024820 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~n 189 (262)
.+.|+|||||||++.. ...-+.+.+.+++++++|++++++|||+ .......
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~~~~~g~~v~iaTGR~---~~~~~~~ 53 (264)
T COG0561 3 IKLLAFDLDGTLLDSN--------------------------KTISPETKEALARLREKGVKVVLATGRP---LPDVLSI 53 (264)
T ss_pred eeEEEEcCCCCccCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEECCCC---hHHHHHH
Confidence 5789999999999963 2256788999999999999999999999 6677788
Q ss_pred HHhcCCCC
Q 024820 190 LLFAGYSD 197 (262)
Q Consensus 190 L~~~G~~~ 197 (262)
++.+|+..
T Consensus 54 ~~~l~~~~ 61 (264)
T COG0561 54 LEELGLDG 61 (264)
T ss_pred HHHcCCCc
Confidence 88888875
No 123
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.24 E-value=3.8e-06 Score=76.31 Aligned_cols=59 Identities=15% Similarity=0.051 Sum_probs=48.1
Q ss_pred CceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHH
Q 024820 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~n 189 (262)
++.|++||||||++...| ..+.+.+.+++|+++|+.|++.|||+ .......
T Consensus 1 ~KLIftDLDGTLLd~~~~--------------------------~~~~a~~aL~~Lk~~GI~vVlaTGRt---~~ev~~l 51 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFN--------------------------SYGAARQALAALERRSIPLVLYSLRT---RAQLEHL 51 (302)
T ss_pred CcEEEEeCCCCCcCCCCc--------------------------CCHHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHH
Confidence 468999999999996321 22457889999999999999999999 6677777
Q ss_pred HHhcCCCC
Q 024820 190 LLFAGYSD 197 (262)
Q Consensus 190 L~~~G~~~ 197 (262)
++++|+..
T Consensus 52 ~~~Lgl~~ 59 (302)
T PRK12702 52 CRQLRLEH 59 (302)
T ss_pred HHHhCCCC
Confidence 78888865
No 124
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.23 E-value=3.6e-06 Score=74.64 Aligned_cols=56 Identities=21% Similarity=0.214 Sum_probs=46.9
Q ss_pred EEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHh
Q 024820 113 WVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF 192 (262)
Q Consensus 113 iIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~ 192 (262)
|++||||||+++. ...++.+.+.+++|+++|++++++|||+ .......+++
T Consensus 2 i~~DlDGTll~~~--------------------------~~~~~~~~~~i~~l~~~g~~~~~~TgR~---~~~~~~~~~~ 52 (256)
T TIGR01486 2 IFTDLDGTLLDPH--------------------------GYDWGPAKEVLERLQELGIPVIPCTSKT---AAEVEYLRKE 52 (256)
T ss_pred EEEcCCCCCcCCC--------------------------CcCchHHHHHHHHHHHCCCeEEEEcCCC---HHHHHHHHHH
Confidence 7899999999862 1134468999999999999999999999 7777888899
Q ss_pred cCCCC
Q 024820 193 AGYSD 197 (262)
Q Consensus 193 ~G~~~ 197 (262)
+|++.
T Consensus 53 ~~~~~ 57 (256)
T TIGR01486 53 LGLED 57 (256)
T ss_pred cCCCC
Confidence 99864
No 125
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.22 E-value=4.1e-06 Score=74.08 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=46.2
Q ss_pred EEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHh
Q 024820 113 WVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF 192 (262)
Q Consensus 113 iIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~ 192 (262)
++|||||||++.. ...-+.+.+.+++|+++|++++++|||+ .......+++
T Consensus 2 i~~DlDGTLl~~~--------------------------~~i~~~~~~~i~~l~~~G~~~~iaTGR~---~~~~~~~~~~ 52 (256)
T TIGR00099 2 IFIDLDGTLLNDD--------------------------HTISPSTKEALAKLREKGIKVVLATGRP---YKEVKNILKE 52 (256)
T ss_pred EEEeCCCCCCCCC--------------------------CccCHHHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHH
Confidence 7899999999852 1234678899999999999999999999 6666777888
Q ss_pred cCCCC
Q 024820 193 AGYSD 197 (262)
Q Consensus 193 ~G~~~ 197 (262)
+|+..
T Consensus 53 ~~~~~ 57 (256)
T TIGR00099 53 LGLDT 57 (256)
T ss_pred cCCCC
Confidence 88864
No 126
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.21 E-value=3.4e-06 Score=70.27 Aligned_cols=124 Identities=14% Similarity=0.019 Sum_probs=72.2
Q ss_pred CceEEEecCCCccCChhHHHHhccCCcCCC-HHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHH
Q 024820 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFN-EDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~y~~~~~~~~~~~~-~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~ 188 (262)
++.+|+|+||||+.+..--... ...|. .-..+.-...--...-||+.+||++|.+. ++|++.|+.+ +.....
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~---~~yA~~ 73 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKV---DADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASL---EEYADP 73 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCC---CCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCc---HHHHHH
Confidence 4689999999999874211000 00000 00000000001245679999999999988 9999999999 555666
Q ss_pred HHHhcCCCC-cceeEe-eCCCCCCCCchhhhHHHHHhhhhcCc--cEEEEECCCcccccccc
Q 024820 189 NLLFAGYSD-WKKLFL-RGPSDQGKPATVYKSEKRLELVNEGY--RIHGSSGDQWSDLLGFA 246 (262)
Q Consensus 189 nL~~~G~~~-~~~Lil-r~~~~~~Kp~~~~Ks~~r~~L~~~g~--~iv~~IGDq~sDl~g~~ 246 (262)
.|+.++... +++..+ |......++. .. +.|...|. +-+++|||+..|+.++.
T Consensus 74 il~~ldp~~~~f~~~l~r~~~~~~~~~-~~-----K~L~~l~~~~~~vIiVDD~~~~~~~~~ 129 (162)
T TIGR02251 74 VLDILDRGGKVISRRLYRESCVFTNGK-YV-----KDLSLVGKDLSKVIIIDNSPYSYSLQP 129 (162)
T ss_pred HHHHHCcCCCEEeEEEEccccEEeCCC-EE-----eEchhcCCChhhEEEEeCChhhhccCc
Confidence 677777653 444333 4332222221 12 22333343 35788999999998876
No 127
>PTZ00174 phosphomannomutase; Provisional
Probab=98.18 E-value=6.9e-06 Score=72.74 Aligned_cols=54 Identities=28% Similarity=0.340 Sum_probs=43.0
Q ss_pred CCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHH
Q 024820 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~ 188 (262)
+.+.|++||||||+++. ...-|...+.+++++++|++++++|||+ .....+
T Consensus 4 ~~klia~DlDGTLL~~~--------------------------~~is~~~~~ai~~l~~~Gi~~viaTGR~---~~~i~~ 54 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPR--------------------------NPITQEMKDTLAKLKSKGFKIGVVGGSD---YPKIKE 54 (247)
T ss_pred CCeEEEEECcCCCcCCC--------------------------CCCCHHHHHHHHHHHHCCCEEEEEcCCC---HHHHHH
Confidence 46789999999999862 2334667899999999999999999998 444455
Q ss_pred HHH
Q 024820 189 NLL 191 (262)
Q Consensus 189 nL~ 191 (262)
.|.
T Consensus 55 ~l~ 57 (247)
T PTZ00174 55 QLG 57 (247)
T ss_pred HHh
Confidence 554
No 128
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.18 E-value=2.1e-05 Score=66.13 Aligned_cols=117 Identities=20% Similarity=0.179 Sum_probs=75.0
Q ss_pred CCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCe--EEEEccCcccc--
Q 024820 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFK--IFLLTGRNEFQ-- 182 (262)
Q Consensus 107 ~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~Gik--I~~vTgR~e~~-- 182 (262)
..|.+++|||.|.||..-. ....-|...+.++++++.+.. |.++||.....
T Consensus 38 ~~Gik~li~DkDNTL~~~~-------------------------~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d 92 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPY-------------------------EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDD 92 (168)
T ss_pred hcCceEEEEcCCCCCCCCC-------------------------cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccC
Confidence 4689999999999998631 345667888889999998774 99999985221
Q ss_pred --HHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhc----CccEEEEECCCcc-cccccc-ccccEEEe
Q 024820 183 --RNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNE----GYRIHGSSGDQWS-DLLGFA-KAERSFKL 254 (262)
Q Consensus 183 --r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~----g~~iv~~IGDq~s-Dl~g~~-~g~r~fkl 254 (262)
......-=+.+|++. ++- ...||.. ++ ...+.+... ....+++||||.. |+.+|+ .|+.++.+
T Consensus 93 ~~~~~a~~~~~~lgIpv-----l~h--~~kKP~~-~~-~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv 163 (168)
T PF09419_consen 93 PDGERAEALEKALGIPV-----LRH--RAKKPGC-FR-EILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILV 163 (168)
T ss_pred ccHHHHHHHHHhhCCcE-----EEe--CCCCCcc-HH-HHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEE
Confidence 122222224568764 111 1334411 11 222233221 2556899999975 999998 78888877
Q ss_pred CCC
Q 024820 255 PNP 257 (262)
Q Consensus 255 PNp 257 (262)
-++
T Consensus 164 ~~g 166 (168)
T PF09419_consen 164 TDG 166 (168)
T ss_pred ecC
Confidence 654
No 129
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.17 E-value=2.6e-05 Score=64.77 Aligned_cols=143 Identities=15% Similarity=0.101 Sum_probs=80.7
Q ss_pred CCCCceEEEecCCCccCChhHHHH---hccCCcCCCHH------HHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEcc
Q 024820 107 GDGKDAWVFDIDETLLSNLPYYAA---HGFGSEIFNED------AFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTG 177 (262)
Q Consensus 107 ~~~~~aiIfDIDgTlldn~~y~~~---~~~~~~~~~~~------~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTg 177 (262)
..++..+|+|+|+||+.+..-... ........+.+ .+.-=.........||+.++++.|.+. +++++.|+
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~ 81 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTM 81 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeC
Confidence 367899999999999987432100 00000000000 000000011256789999999999955 99999999
Q ss_pred CccccHHHHHHHHHhcCCCC-cc-eeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECCCccccccccccccEEEeC
Q 024820 178 RNEFQRNTTEKNLLFAGYSD-WK-KLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFAKAERSFKLP 255 (262)
Q Consensus 178 R~e~~r~~T~~nL~~~G~~~-~~-~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~~g~r~fklP 255 (262)
.+ +..+...|+.++... ++ +.++..++..+ ...|. . ..+-....+-++.|+|+..=..... .-.+.++
T Consensus 82 ~~---~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~---~~~Kd-L-~~i~~~d~~~vvivDd~~~~~~~~~--~N~i~i~ 151 (156)
T TIGR02250 82 GT---RAYAQAIAKLIDPDGKYFGDRIISRDESGS---PHTKS-L-LRLFPADESMVVIIDDREDVWPWHK--RNLIQIE 151 (156)
T ss_pred Cc---HHHHHHHHHHhCcCCCeeccEEEEeccCCC---Ccccc-H-HHHcCCCcccEEEEeCCHHHhhcCc--cCEEEeC
Confidence 99 677777788878763 44 44443332111 11232 1 1122223456788999986555543 3456666
Q ss_pred CCCCC
Q 024820 256 NPMYY 260 (262)
Q Consensus 256 Np~Y~ 260 (262)
-..||
T Consensus 152 ~~~~f 156 (156)
T TIGR02250 152 PYNYF 156 (156)
T ss_pred CcccC
Confidence 65554
No 130
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=98.16 E-value=3.9e-06 Score=73.91 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=50.9
Q ss_pred EEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHh
Q 024820 113 WVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF 192 (262)
Q Consensus 113 iIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~ 192 (262)
++||+||||+++ ..++|++.+.++.++++|+++.|+||.+...+....+.|.+
T Consensus 1 ~lfD~DGvL~~~---------------------------~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~ 53 (236)
T TIGR01460 1 FLFDIDGVLWLG---------------------------HKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSS 53 (236)
T ss_pred CEEeCcCccCcC---------------------------CccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999996 34588999999999999999999998776668889999999
Q ss_pred -cCCCC
Q 024820 193 -AGYSD 197 (262)
Q Consensus 193 -~G~~~ 197 (262)
.|++.
T Consensus 54 ~~g~~~ 59 (236)
T TIGR01460 54 LLGVDV 59 (236)
T ss_pred hcCCCC
Confidence 78865
No 131
>PLN02887 hydrolase family protein
Probab=98.08 E-value=1.2e-05 Score=79.73 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=48.0
Q ss_pred CCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHH
Q 024820 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~ 188 (262)
+.+.|++||||||+++. ...-+...+.+++|+++|+++++.|||+ ......
T Consensus 307 ~iKLIa~DLDGTLLn~d--------------------------~~Is~~t~eAI~kl~ekGi~~vIATGR~---~~~i~~ 357 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSK--------------------------SQISETNAKALKEALSRGVKVVIATGKA---RPAVID 357 (580)
T ss_pred CccEEEEeCCCCCCCCC--------------------------CccCHHHHHHHHHHHHCCCeEEEEcCCC---HHHHHH
Confidence 46789999999999862 1234567899999999999999999999 666667
Q ss_pred HHHhcCCC
Q 024820 189 NLLFAGYS 196 (262)
Q Consensus 189 nL~~~G~~ 196 (262)
.++.+|+.
T Consensus 358 ~l~~L~l~ 365 (580)
T PLN02887 358 ILKMVDLA 365 (580)
T ss_pred HHHHhCcc
Confidence 77777764
No 132
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.07 E-value=6.4e-06 Score=69.85 Aligned_cols=88 Identities=25% Similarity=0.249 Sum_probs=63.7
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCcc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYR 230 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~ 230 (262)
..++.|++.++++.|++.|+++.++||-+ +..+....+++|+.. ..+..... +||.+.......+.|+..+.
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~---~~~a~~~~~~lgi~~--~~v~a~~~--~kP~~k~~~~~i~~l~~~~~- 196 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDN---ESTASAIAKQLGIFD--SIVFARVI--GKPEPKIFLRIIKELQVKPG- 196 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSE---HHHHHHHHHHTTSCS--EEEEESHE--TTTHHHHHHHHHHHHTCTGG-
T ss_pred cCcchhhhhhhhhhhhccCcceeeeeccc---ccccccccccccccc--cccccccc--ccccchhHHHHHHHHhcCCC-
Confidence 46889999999999999999999999988 778888888999954 22222111 45543311444445553333
Q ss_pred EEEEECCCcccccccc
Q 024820 231 IHGSSGDQWSDLLGFA 246 (262)
Q Consensus 231 iv~~IGDq~sDl~g~~ 246 (262)
.+++|||..+|+.+.+
T Consensus 197 ~v~~vGDg~nD~~al~ 212 (215)
T PF00702_consen 197 EVAMVGDGVNDAPALK 212 (215)
T ss_dssp GEEEEESSGGHHHHHH
T ss_pred EEEEEccCHHHHHHHH
Confidence 7899999999998865
No 133
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=98.05 E-value=1.4e-05 Score=72.23 Aligned_cols=97 Identities=23% Similarity=0.286 Sum_probs=73.2
Q ss_pred CCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHH
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~ 187 (262)
++.+.+|||.||.|.. ...++||+.+.++.|++.|-+|+|+||.+.+.|+...
T Consensus 20 ~~~DtfifDcDGVlW~---------------------------g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~ 72 (306)
T KOG2882|consen 20 DSFDTFIFDCDGVLWL---------------------------GEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYM 72 (306)
T ss_pred hhcCEEEEcCCcceee---------------------------cCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHH
Confidence 5788999999996554 2678999999999999999999999999999999999
Q ss_pred HHHHhcCCCC-cceeEeeC----------CC-CCCCCchhhhHHHHHhhhhcCccE
Q 024820 188 KNLLFAGYSD-WKKLFLRG----------PS-DQGKPATVYKSEKRLELVNEGYRI 231 (262)
Q Consensus 188 ~nL~~~G~~~-~~~Lilr~----------~~-~~~Kp~~~~Ks~~r~~L~~~g~~i 231 (262)
+-++++|+.. -.+-++.+ .. ...+-.+..-++++++|.+.|++-
T Consensus 73 kK~~~lG~~~v~e~~i~ssa~~~a~ylk~~~~~~k~Vyvig~~gi~~eL~~aG~~~ 128 (306)
T KOG2882|consen 73 KKFAKLGFNSVKEENIFSSAYAIADYLKKRKPFGKKVYVIGEEGIREELDEAGFEY 128 (306)
T ss_pred HHHHHhCccccCcccccChHHHHHHHHHHhCcCCCeEEEecchhhhHHHHHcCcee
Confidence 9999999973 12222222 11 111122334478899999989654
No 134
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=98.01 E-value=1.2e-05 Score=74.05 Aligned_cols=59 Identities=17% Similarity=0.330 Sum_probs=49.5
Q ss_pred eEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHC----CCeEEEEccCccccHHHHH
Q 024820 112 AWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQL----GFKIFLLTGRNEFQRNTTE 187 (262)
Q Consensus 112 aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~----GikI~~vTgR~e~~r~~T~ 187 (262)
+++||+||||.++ .+++|++.++++.|+++ |+++.|+||.....+....
T Consensus 2 ~~ifD~DGvL~~g---------------------------~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~ 54 (321)
T TIGR01456 2 GFAFDIDGVLFRG---------------------------KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARA 54 (321)
T ss_pred EEEEeCcCceECC---------------------------ccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHH
Confidence 6999999999986 34589999999999998 9999999998866666555
Q ss_pred HHH-HhcCCCC
Q 024820 188 KNL-LFAGYSD 197 (262)
Q Consensus 188 ~nL-~~~G~~~ 197 (262)
+-| +++|++.
T Consensus 55 ~~l~~~lG~~~ 65 (321)
T TIGR01456 55 EEISSLLGVDV 65 (321)
T ss_pred HHHHHHcCCCC
Confidence 655 8889864
No 135
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=97.99 E-value=1.7e-05 Score=66.06 Aligned_cols=110 Identities=20% Similarity=0.254 Sum_probs=62.4
Q ss_pred ceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCC-hHHHHHHHHHHHCCCeEEEEccCccc--------
Q 024820 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPAL-PASLTFYKELKQLGFKIFLLTGRNEF-------- 181 (262)
Q Consensus 111 ~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~i-pgalell~~Lk~~GikI~~vTgR~e~-------- 181 (262)
+...||+||||+.+... ..|. ..+++| ..+ |++.+.|++|++.|++|+++||=..-
T Consensus 1 Kia~fD~DgTLi~~~s~--------~~f~-~~~~D~------~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~ 65 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSG--------KKFP-KDPDDW------KFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKD 65 (159)
T ss_dssp SEEEE-SCTTTEE-STS--------TTS--SSTCGG------EEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCH
T ss_pred CEEEEeCCCCccCCCCC--------CcCc-CCHHHh------hhcchhHHHHHHHHHhcCCeEEEEeCccccccccccch
Confidence 45789999999987431 1121 111111 223 47999999999999999999986322
Q ss_pred ---cHHHHHHHHHhcCCCCcceeEeeC-CCCCCCCchhhhHHHHHhhhhc-------CccEEEEECCCccc
Q 024820 182 ---QRNTTEKNLLFAGYSDWKKLFLRG-PSDQGKPATVYKSEKRLELVNE-------GYRIHGSSGDQWSD 241 (262)
Q Consensus 182 ---~r~~T~~nL~~~G~~~~~~Lilr~-~~~~~Kp~~~~Ks~~r~~L~~~-------g~~iv~~IGDq~sD 241 (262)
........|+.+|++. .++... .+.-+||.+ ++-..+.+. ...-..+|||...+
T Consensus 66 ~~~~~~ki~~il~~l~ip~--~~~~a~~~d~~RKP~~----GM~~~~~~~~~~~~~id~~~Sf~VGDaagr 130 (159)
T PF08645_consen 66 LENFHEKIENILKELGIPI--QVYAAPHKDPCRKPNP----GMWEFALKDYNDGVEIDLANSFYVGDAAGR 130 (159)
T ss_dssp HHHHHHHHHHHHHHCTS-E--EEEECGCSSTTSTTSS----HHHHHHCCCTSTT--S-CCC-EEEESSCHC
T ss_pred HHHHHHHHHHHHHHcCCce--EEEecCCCCCCCCCch----hHHHHHHHhccccccccccceEEEeccCCC
Confidence 2344566778889984 344433 335677643 232222221 12347899997443
No 136
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.94 E-value=5e-05 Score=63.91 Aligned_cols=137 Identities=17% Similarity=0.099 Sum_probs=69.6
Q ss_pred CCceEEEecCCCccCChhHHHHhccCCcCCCHHHHH-HHHHh--cCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHH
Q 024820 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFD-EWVDL--AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNT 185 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~-~wv~~--~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~ 185 (262)
.++.||||+|.||-+-.-+.. . ..+|....=. .-++. .....+|++.++|+.|+++|++|+++|.-++ -+.
T Consensus 2 ~PklvvFDLD~TlW~~~~~~~---~-~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~--P~~ 75 (169)
T PF12689_consen 2 LPKLVVFDLDYTLWPPWMDTH---V-GPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDE--PDW 75 (169)
T ss_dssp S-SEEEE-STTTSSSS-TTTS---S--S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S---HHH
T ss_pred CCcEEEEcCcCCCCchhHhhc---c-CCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCC--hHH
Confidence 367999999999998543321 0 0111100000 00111 2357899999999999999999999996553 367
Q ss_pred HHHHHHhcCCC----------CcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECCCcccccccc-ccccEEEe
Q 024820 186 TEKNLLFAGYS----------DWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFA-KAERSFKL 254 (262)
Q Consensus 186 T~~nL~~~G~~----------~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~-~g~r~fkl 254 (262)
..+.|+.++++ .+++..--.. ..| ..+...++++.. -.|...+.++|...-+.... .|..++..
T Consensus 76 A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~--gsK--~~Hf~~i~~~tg-I~y~eMlFFDDe~~N~~~v~~lGV~~v~v 150 (169)
T PF12689_consen 76 ARELLKLLEIDDADGDGVPLIEYFDYLEIYP--GSK--TTHFRRIHRKTG-IPYEEMLFFDDESRNIEVVSKLGVTCVLV 150 (169)
T ss_dssp HHHHHHHTT-C----------CCECEEEESS--S-H--HHHHHHHHHHH----GGGEEEEES-HHHHHHHHTTT-EEEE-
T ss_pred HHHHHHhcCCCccccccccchhhcchhheec--Cch--HHHHHHHHHhcC-CChhHEEEecCchhcceeeEecCcEEEEe
Confidence 78889999998 3332111111 111 122222222221 24667999999877665544 78888888
Q ss_pred CC
Q 024820 255 PN 256 (262)
Q Consensus 255 PN 256 (262)
||
T Consensus 151 ~~ 152 (169)
T PF12689_consen 151 PD 152 (169)
T ss_dssp SS
T ss_pred CC
Confidence 87
No 137
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.94 E-value=2.8e-05 Score=66.22 Aligned_cols=52 Identities=29% Similarity=0.432 Sum_probs=41.8
Q ss_pred EEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHh
Q 024820 113 WVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF 192 (262)
Q Consensus 113 iIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~ 192 (262)
++||+||||+++. ..+.-|.+.+.+++|+++|++++++|||+ .....+.++.
T Consensus 2 i~~D~DgTL~~~~-------------------------~~~~~~~~~~~l~~l~~~g~~~~i~TGR~---~~~~~~~~~~ 53 (204)
T TIGR01484 2 LFFDLDGTLLDPN-------------------------AHELSPETIEALERLREAGVKVVLVTGRS---LAEIKELLKQ 53 (204)
T ss_pred EEEeCcCCCcCCC-------------------------CCcCCHHHHHHHHHHHHCCCEEEEECCCC---HHHHHHHHHh
Confidence 7899999999852 12345789999999999999999999999 5555556555
No 138
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.94 E-value=0.00012 Score=63.73 Aligned_cols=134 Identities=21% Similarity=0.301 Sum_probs=83.5
Q ss_pred CCCceEEEecCCCccCCh-hHHHHhccCCcC--------CCHHHHHHHHHh-------------------cCCCCChHHH
Q 024820 108 DGKDAWVFDIDETLLSNL-PYYAAHGFGSEI--------FNEDAFDEWVDL-------------------AKAPALPASL 159 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~-~y~~~~~~~~~~--------~~~~~~~~wv~~-------------------~~a~~ipgal 159 (262)
..+-.++||.|.|++|-. .-+...-.+.+. +...-|++++.. ...|..||++
T Consensus 11 ~~ril~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pgmv 90 (256)
T KOG3120|consen 11 SPRILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPGMV 90 (256)
T ss_pred CCcEEEEEecCceeecCCcchHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCccHH
Confidence 345579999999999842 222211111111 112236666552 4578999999
Q ss_pred HHHHHHHHCCC-eEEEEccCccccHHHHHHHHHhcCCCCcc--------------eeEeeCCCC----CCCCchhhh---
Q 024820 160 TFYKELKQLGF-KIFLLTGRNEFQRNTTEKNLLFAGYSDWK--------------KLFLRGPSD----QGKPATVYK--- 217 (262)
Q Consensus 160 ell~~Lk~~Gi-kI~~vTgR~e~~r~~T~~nL~~~G~~~~~--------------~Lilr~~~~----~~Kp~~~~K--- 217 (262)
++++.+++.|. .+++||.-. --..++||+++|+...| .|.+++-.. ...|.--=|
T Consensus 91 ~lik~~ak~g~~eliIVSDaN---sfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmCKg~V 167 (256)
T KOG3120|consen 91 RLIKSAAKLGCFELIIVSDAN---SFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMCKGLV 167 (256)
T ss_pred HHHHHHHhCCCceEEEEecCc---hhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhhhhHH
Confidence 99999999995 999999987 56778999999996533 245554221 122221111
Q ss_pred -HHHHHhhhhcC--ccEEEEECCCcccccc
Q 024820 218 -SEKRLELVNEG--YRIHGSSGDQWSDLLG 244 (262)
Q Consensus 218 -s~~r~~L~~~g--~~iv~~IGDq~sDl~g 244 (262)
...+....+.| |.-++|+||.-+|+=-
T Consensus 168 l~~~~~s~~~~gv~yer~iYvGDG~nD~CP 197 (256)
T KOG3120|consen 168 LDELVASQLKDGVRYERLIYVGDGANDFCP 197 (256)
T ss_pred HHHHHHHHhhcCCceeeEEEEcCCCCCcCc
Confidence 22222222334 4478999999999843
No 139
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=97.93 E-value=5.4e-05 Score=70.45 Aligned_cols=100 Identities=26% Similarity=0.367 Sum_probs=69.2
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhc-C-------CCCcceeEeeCCCC-----CCC-------
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFA-G-------YSDWKKLFLRGPSD-----QGK------- 211 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~-G-------~~~~~~Lilr~~~~-----~~K------- 211 (262)
..+.||+.++|++|+++|++++++||++ +..|...|+.+ | +..+++.++.+..- .++
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~---~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~ 259 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSD---YDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDV 259 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeC
Confidence 5668999999999999999999999999 88888888886 6 76777766654210 000
Q ss_pred --------------CchhhhHH---HHHhhhhcCccEEEEECCCcc-cccccc--ccccEEEe
Q 024820 212 --------------PATVYKSE---KRLELVNEGYRIHGSSGDQWS-DLLGFA--KAERSFKL 254 (262)
Q Consensus 212 --------------p~~~~Ks~---~r~~L~~~g~~iv~~IGDq~s-Dl~g~~--~g~r~fkl 254 (262)
+...|.-+ ...++....-..+++|||+.. |+.+++ .|.|++.+
T Consensus 260 ~~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI 322 (343)
T TIGR02244 260 ETGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAI 322 (343)
T ss_pred CCCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEE
Confidence 01122211 111111112246899999875 999987 89999865
No 140
>PTZ00445 p36-lilke protein; Provisional
Probab=97.84 E-value=9.2e-05 Score=64.19 Aligned_cols=167 Identities=14% Similarity=0.049 Sum_probs=99.7
Q ss_pred HHHHhhhcCCcccccHHHHHHHHHHHHhhcccccCCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHH---Hh
Q 024820 73 EFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWV---DL 149 (262)
Q Consensus 73 ~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~~~~~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv---~~ 149 (262)
..++.|....++. ...--+.|..+.+.++. .|.++|++|+|-||+.-.. |+ |.+.. ..
T Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~~~~v~~L~~---~GIk~Va~D~DnTlI~~Hs-------gG-------~~~~~~~~~~ 71 (219)
T PTZ00445 11 DAFKEYIESGLFD--HLNPHESADKFVDLLNE---CGIKVIASDFDLTMITKHS-------GG-------YIDPDNDDIR 71 (219)
T ss_pred HHHHHHHHhcccc--cCCHHHHHHHHHHHHHH---cCCeEEEecchhhhhhhhc-------cc-------ccCCCcchhh
Confidence 4456777766653 33334555666666554 4899999999999998310 00 11100 00
Q ss_pred cCCCCChHHHHHHHHHHHCCCeEEEEccCcccc------------HHHHHHHHHhcCCCCc-ceeEe------eCC----
Q 024820 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQ------------RNTTEKNLLFAGYSDW-KKLFL------RGP---- 206 (262)
Q Consensus 150 ~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~------------r~~T~~nL~~~G~~~~-~~Lil------r~~---- 206 (262)
--..+-|....+++.|++.|++|++||=.++.. .+.....|++-+...- ..++- ..+
T Consensus 72 ~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~ 151 (219)
T PTZ00445 72 VLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYR 151 (219)
T ss_pred hhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhh
Confidence 013467889999999999999999999887532 2234455554443320 11110 000
Q ss_pred -CCCCCCchhhhHHH-HHhhhhcCc--cEEEEECCCcccccccc-ccccEEEeCCCC
Q 024820 207 -SDQGKPATVYKSEK-RLELVNEGY--RIHGSSGDQWSDLLGFA-KAERSFKLPNPM 258 (262)
Q Consensus 207 -~~~~Kp~~~~Ks~~-r~~L~~~g~--~iv~~IGDq~sDl~g~~-~g~r~fklPNp~ 258 (262)
-.-.||.+..|+-- +.-+++.|. ..++.|+|...-+.++. .|..++.++++.
T Consensus 152 ~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~~e 208 (219)
T PTZ00445 152 PLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTGNE 208 (219)
T ss_pred hhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCChH
Confidence 01245555554331 122223333 46999999999999987 799999998763
No 141
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.82 E-value=6e-05 Score=75.39 Aligned_cols=62 Identities=21% Similarity=0.219 Sum_probs=48.6
Q ss_pred CCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHH
Q 024820 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTT 186 (262)
Q Consensus 107 ~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T 186 (262)
+-+++.|++||||||+++.. ...+.+.+.++.|+++|++++++|||+ ....
T Consensus 413 ~~~~KLIfsDLDGTLLd~d~--------------------------~i~~~t~eAL~~L~ekGI~~VIATGRs---~~~i 463 (694)
T PRK14502 413 GQFKKIVYTDLDGTLLNPLT--------------------------YSYSTALDALRLLKDKELPLVFCSAKT---MGEQ 463 (694)
T ss_pred CceeeEEEEECcCCCcCCCC--------------------------ccCHHHHHHHHHHHHcCCeEEEEeCCC---HHHH
Confidence 33678899999999999632 122456888999999999999999999 5566
Q ss_pred HHHHHhcCCCC
Q 024820 187 EKNLLFAGYSD 197 (262)
Q Consensus 187 ~~nL~~~G~~~ 197 (262)
...++.+|+..
T Consensus 464 ~~l~~~Lgl~~ 474 (694)
T PRK14502 464 DLYRNELGIKD 474 (694)
T ss_pred HHHHHHcCCCC
Confidence 67777788753
No 142
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=97.79 E-value=5e-05 Score=74.75 Aligned_cols=82 Identities=27% Similarity=0.253 Sum_probs=65.3
Q ss_pred CCCCChHHHHHHHHHHHCCC-eEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCc
Q 024820 151 KAPALPASLTFYKELKQLGF-KIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGY 229 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~Gi-kI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~ 229 (262)
..++.||+.+++++|+++|+ +++++||++ +..+...++++|+..++.-.. +..|....++++.++
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~---~~~a~~i~~~lgi~~~f~~~~----------p~~K~~~i~~l~~~~- 425 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDR---RAVAERVARELGIDEVHAELL----------PEDKLEIVKELREKY- 425 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCC---HHHHHHHHHHcCChhhhhccC----------cHHHHHHHHHHHhcC-
Confidence 57899999999999999999 999999998 788899999999976442111 124445555666555
Q ss_pred cEEEEECCCcccccccc
Q 024820 230 RIHGSSGDQWSDLLGFA 246 (262)
Q Consensus 230 ~iv~~IGDq~sDl~g~~ 246 (262)
..+++|||..+|+.+.+
T Consensus 426 ~~v~~vGDg~nD~~al~ 442 (536)
T TIGR01512 426 GPVAMVGDGINDAPALA 442 (536)
T ss_pred CEEEEEeCCHHHHHHHH
Confidence 67899999999999876
No 143
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.78 E-value=6.9e-05 Score=74.02 Aligned_cols=82 Identities=26% Similarity=0.269 Sum_probs=64.6
Q ss_pred CCCCChHHHHHHHHHHHCC-CeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCc
Q 024820 151 KAPALPASLTFYKELKQLG-FKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGY 229 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~G-ikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~ 229 (262)
..++.||+.+++++|+++| ++++++||.+ +..+...++++|+..++.-+ .+..|....+++...+.
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~---~~~a~~i~~~lgi~~~f~~~----------~p~~K~~~v~~l~~~~~ 448 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDN---RSAAEAVAAELGIDEVHAEL----------LPEDKLAIVKELQEEGG 448 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCC---HHHHHHHHHHhCCCeeeccC----------CHHHHHHHHHHHHHcCC
Confidence 5789999999999999999 9999999998 77888899999996543211 12344455555655554
Q ss_pred cEEEEECCCcccccccc
Q 024820 230 RIHGSSGDQWSDLLGFA 246 (262)
Q Consensus 230 ~iv~~IGDq~sDl~g~~ 246 (262)
.+++|||..+|+.+.+
T Consensus 449 -~v~~vGDg~nD~~al~ 464 (556)
T TIGR01525 449 -VVAMVGDGINDAPALA 464 (556)
T ss_pred -EEEEEECChhHHHHHh
Confidence 7899999999999876
No 144
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=97.78 E-value=0.00018 Score=70.82 Aligned_cols=120 Identities=21% Similarity=0.236 Sum_probs=80.2
Q ss_pred ceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHH
Q 024820 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNL 190 (262)
Q Consensus 111 ~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL 190 (262)
+.||=|||||+.-+.-.-.- + ++ .+++=.--|+.+||...+++||++.|+|+|.-.|...|..-|
T Consensus 531 kIVISDIDGTITKSDvLGh~--l---p~----------iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL 595 (738)
T KOG2116|consen 531 KIVISDIDGTITKSDVLGHV--L---PM----------IGKDWTHTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYL 595 (738)
T ss_pred cEEEecCCCceEhhhhhhhh--h---hh----------hcCcchhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHH
Confidence 45788999999987432100 0 00 122223459999999999999999999999999888887665
Q ss_pred Hh---cCCCCc-ceeEeeCCCC---------CCCCchhhhHHHHHhhhhc---Ccc-EEEEECCCcccccccc
Q 024820 191 LF---AGYSDW-KKLFLRGPSD---------QGKPATVYKSEKRLELVNE---GYR-IHGSSGDQWSDLLGFA 246 (262)
Q Consensus 191 ~~---~G~~~~-~~Lilr~~~~---------~~Kp~~~~Ks~~r~~L~~~---g~~-iv~~IGDq~sDl~g~~ 246 (262)
+. -|..-. --+++.++.- .+|| -++|-+....|..+ .++ -.+-+|...+|.....
T Consensus 596 ~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkP-e~FKIAcL~DIk~LF~p~~nPFYAgFGNR~TDviSY~ 667 (738)
T KOG2116|consen 596 KNVEQDGKKLPDGPVILSPDSLFAALHREVIERKP-EVFKIACLTDIKNLFPPSGNPFYAGFGNRITDVISYR 667 (738)
T ss_pred HHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCc-hhhhHHHHHHHHHhcCCCCCceeeecCCCcccceeee
Confidence 54 454321 3577776541 2444 25776666666643 222 4778999999998754
No 145
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=97.72 E-value=7.4e-05 Score=67.09 Aligned_cols=63 Identities=21% Similarity=0.183 Sum_probs=47.0
Q ss_pred CCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHH-CCCeEEEEccCccccHHHHH
Q 024820 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQ-LGFKIFLLTGRNEFQRNTTE 187 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~-~GikI~~vTgR~e~~r~~T~ 187 (262)
....|+||+||||++..+- ......-|.+.+.++.|++ .|+.++++|||+ .....
T Consensus 13 ~~~li~~D~DGTLl~~~~~---------------------p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~---~~~~~ 68 (266)
T PRK10187 13 ANYAWFFDLDGTLAEIKPH---------------------PDQVVVPDNILQGLQLLATANDGALALISGRS---MVELD 68 (266)
T ss_pred CCEEEEEecCCCCCCCCCC---------------------cccccCCHHHHHHHHHHHhCCCCcEEEEeCCC---HHHHH
Confidence 3468999999999974210 0123556899999999998 799999999999 65666
Q ss_pred HHHHhcCC
Q 024820 188 KNLLFAGY 195 (262)
Q Consensus 188 ~nL~~~G~ 195 (262)
+++...++
T Consensus 69 ~~~~~~~~ 76 (266)
T PRK10187 69 ALAKPYRF 76 (266)
T ss_pred HhcCcccc
Confidence 66655553
No 146
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=97.72 E-value=8.4e-05 Score=65.67 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=46.3
Q ss_pred eEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHH
Q 024820 112 AWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLL 191 (262)
Q Consensus 112 aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~ 191 (262)
.|+.|+||||++... ...+..|...+++++++++|+.++++|||+ ......-++
T Consensus 3 li~tDlDGTLl~~~~-----------------------~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~---~~~~~~~~~ 56 (249)
T TIGR01485 3 LLVSDLDNTLVDHTD-----------------------GDNQALLRLNALLEDHRGEDSLLVYSTGRS---PHSYKELQK 56 (249)
T ss_pred EEEEcCCCcCcCCCC-----------------------CChHHHHHHHHHHHHhhccCceEEEEcCCC---HHHHHHHHh
Confidence 688999999997310 023345788999999999999999999999 666666666
Q ss_pred hcCCCC
Q 024820 192 FAGYSD 197 (262)
Q Consensus 192 ~~G~~~ 197 (262)
.+|+..
T Consensus 57 ~~~~~~ 62 (249)
T TIGR01485 57 QKPLLT 62 (249)
T ss_pred cCCCCC
Confidence 677754
No 147
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.71 E-value=0.00037 Score=60.60 Aligned_cols=112 Identities=13% Similarity=0.031 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHh----cCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCC----
Q 024820 138 FNEDAFDEWVDL----AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQ---- 209 (262)
Q Consensus 138 ~~~~~~~~wv~~----~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~---- 209 (262)
++..++++++.. ...+|=+-..++|-.|+.++ -.+.||-+ +...++.|+++|+.+-|+-+..=+-..
T Consensus 81 ~d~deY~~~V~~~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~---k~HA~r~Lk~LGieDcFegii~~e~~np~~~ 155 (244)
T KOG3109|consen 81 FDADEYHRFVHGRLPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAY---KVHAIRILKKLGIEDCFEGIICFETLNPIEK 155 (244)
T ss_pred CCHHHHHHHhhccCcHhhcCCCHHHHHHHHhCcccc--EEEecCCc---HHHHHHHHHHhChHHhccceeEeeccCCCCC
Confidence 556667777764 34667777788988888876 56678888 889999999999987555443322111
Q ss_pred ---CCCchhhhHHHHHhhhhcCccEEEEECCCcccccccc-ccccEEEe
Q 024820 210 ---GKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFA-KAERSFKL 254 (262)
Q Consensus 210 ---~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~-~g~r~fkl 254 (262)
-||.+..-+...+...-..++-+..++|+..-+++|+ .|.+++..
T Consensus 156 ~~vcKP~~~afE~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv 204 (244)
T KOG3109|consen 156 TVVCKPSEEAFEKAMKVAGIDSPRNTYFFDDSERNIQTAKEVGLKTVLV 204 (244)
T ss_pred ceeecCCHHHHHHHHHHhCCCCcCceEEEcCchhhHHHHHhccceeEEE
Confidence 2343321111111111123456899999999999998 78887654
No 148
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=97.69 E-value=0.0002 Score=70.98 Aligned_cols=81 Identities=25% Similarity=0.254 Sum_probs=62.8
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCcc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYR 230 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~ 230 (262)
..++.|++.+++++|+++|++++++||.+ +......++++|++ ++... + +.-|....+++++++ +
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~---~~~a~~ia~~lgi~-----~~~~~----~--p~~K~~~v~~l~~~~-~ 467 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDN---RKTAKAVAKELGIN-----VRAEV----L--PDDKAALIKELQEKG-R 467 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCC---HHHHHHHHHHcCCc-----EEccC----C--hHHHHHHHHHHHHcC-C
Confidence 47889999999999999999999999998 77888888999995 11111 1 234555555565544 5
Q ss_pred EEEEECCCcccccccc
Q 024820 231 IHGSSGDQWSDLLGFA 246 (262)
Q Consensus 231 iv~~IGDq~sDl~g~~ 246 (262)
.+++|||..+|..+.+
T Consensus 468 ~v~~VGDg~nD~~al~ 483 (562)
T TIGR01511 468 VVAMVGDGINDAPALA 483 (562)
T ss_pred EEEEEeCCCccHHHHh
Confidence 6899999999998876
No 149
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=97.69 E-value=8.6e-05 Score=70.13 Aligned_cols=123 Identities=22% Similarity=0.253 Sum_probs=84.0
Q ss_pred CCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHH
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~ 187 (262)
...+.||+|||||+.-+...-.-.+. .++.=---|+.++|.....+|++|.++|+|+-.+...|.
T Consensus 373 ~n~kiVVsDiDGTITkSD~~Ghv~~m---------------iGkdwth~gVAkLYtdI~rNGYkI~YltsR~~Gqa~sTr 437 (580)
T COG5083 373 NNKKIVVSDIDGTITKSDALGHVKQM---------------IGKDWTHNGVAKLYTDIDRNGYKIKYLTSRSYGQADSTR 437 (580)
T ss_pred CCCcEEEEecCCcEEehhhHHHHHHH---------------hccchhhcchhhhhhhhccCceEEEEEecccccchhhhh
Confidence 34678999999999987532100011 122223348888999999999999999999999888887
Q ss_pred HHHH---hcCCCCcc-eeEeeCCCC---------CCCCchhhhHHHHHhhhhcCccE---EEEECCCcccccccc
Q 024820 188 KNLL---FAGYSDWK-KLFLRGPSD---------QGKPATVYKSEKRLELVNEGYRI---HGSSGDQWSDLLGFA 246 (262)
Q Consensus 188 ~nL~---~~G~~~~~-~Lilr~~~~---------~~Kp~~~~Ks~~r~~L~~~g~~i---v~~IGDq~sDl~g~~ 246 (262)
.-|+ +.|+.-|+ .++|.++.. -+|| -.+|.+..+.|+..+..- .+-+|....|..+..
T Consensus 438 sylrnieQngykLpdgpviLspd~t~aal~relIlrkp-E~FKiayLndl~slf~e~~PFyAGFGNriTDvisY~ 511 (580)
T COG5083 438 SYLRNIEQNGYKLPDGPVILSPDRTMAALYRELILRKP-EVFKIAYLNDLKSLFIEFDPFYAGFGNRITDVISYS 511 (580)
T ss_pred hHHHhhhhcCccCCCCCEeeccchhhhhhhhhhhhcCh-HHHHHHHHHHHHHhhCcCChhhccccccchhheeec
Confidence 6555 56776554 366665431 1333 248888888888765542 456899999988754
No 150
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=97.66 E-value=0.00012 Score=65.45 Aligned_cols=89 Identities=25% Similarity=0.353 Sum_probs=62.8
Q ss_pred CCceEEEecCCCccCChhH-----HHHhcc------CCcCCC--HHHHHHHH----HhcCCCC-ChHHHHHHHHHHHCCC
Q 024820 109 GKDAWVFDIDETLLSNLPY-----YAAHGF------GSEIFN--EDAFDEWV----DLAKAPA-LPASLTFYKELKQLGF 170 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y-----~~~~~~------~~~~~~--~~~~~~wv----~~~~a~~-ipgalell~~Lk~~Gi 170 (262)
..--||||||+||+-...+ +....+ +..... ...+.+|+ ...+..+ =+.+.++++.|+++|+
T Consensus 19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~ 98 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI 98 (252)
T ss_pred CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence 3456999999999965311 111101 101111 24456776 3344433 4788899999999999
Q ss_pred eEEEEccCccccHHHHHHHHHhcCCCC
Q 024820 171 KIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 171 kI~~vTgR~e~~r~~T~~nL~~~G~~~ 197 (262)
+++-+|.|+...+..|.+.|+++|+..
T Consensus 99 ~v~alT~~~~~~~~~t~~~Lk~~gi~f 125 (252)
T PF11019_consen 99 PVIALTARGPNMEDWTLRELKSLGIDF 125 (252)
T ss_pred cEEEEcCCChhhHHHHHHHHHHCCCCc
Confidence 999999999999999999999999964
No 151
>PLN02423 phosphomannomutase
Probab=97.63 E-value=0.00015 Score=64.29 Aligned_cols=45 Identities=29% Similarity=0.457 Sum_probs=36.2
Q ss_pred CCCceEE-EecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCc
Q 024820 108 DGKDAWV-FDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRN 179 (262)
Q Consensus 108 ~~~~aiI-fDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~ 179 (262)
.++++++ |||||||+++. ...-|.+.+.+++|+++ ++++++|||.
T Consensus 4 ~~~~~i~~~D~DGTLl~~~--------------------------~~i~~~~~~ai~~l~~~-i~fviaTGR~ 49 (245)
T PLN02423 4 RKPGVIALFDVDGTLTAPR--------------------------KEATPEMLEFMKELRKV-VTVGVVGGSD 49 (245)
T ss_pred CccceEEEEeccCCCcCCC--------------------------CcCCHHHHHHHHHHHhC-CEEEEECCcC
Confidence 3677777 99999999862 12336778999999977 9999999996
No 152
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.00033 Score=64.04 Aligned_cols=123 Identities=19% Similarity=0.084 Sum_probs=82.4
Q ss_pred eEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhc-CCCCChHHHHHHHHHHHCC-CeEEEEccCccccHHHHHHH
Q 024820 112 AWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLA-KAPALPASLTFYKELKQLG-FKIFLLTGRNEFQRNTTEKN 189 (262)
Q Consensus 112 aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~-~a~~ipgalell~~Lk~~G-ikI~~vTgR~e~~r~~T~~n 189 (262)
.+|-|||+|+..+.--. -....|..|.... ..+++||+-.+|+.|.+.| ..|+|+|+.+...-....+-
T Consensus 163 giISDiDDTV~~T~V~~---------~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~ef 233 (373)
T COG4850 163 GIISDIDDTVKVTGVTE---------GPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEF 233 (373)
T ss_pred eeeeccccceEeccccc---------chHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHH
Confidence 58999999999873110 0024566666643 4689999999999999999 99999999998877777788
Q ss_pred HHhcCCCCcceeEeeCCC----CCCCCchhhh-HHHHHhhhhcCccEEEEECCCc-ccccc
Q 024820 190 LLFAGYSDWKKLFLRGPS----DQGKPATVYK-SEKRLELVNEGYRIHGSSGDQW-SDLLG 244 (262)
Q Consensus 190 L~~~G~~~~~~Lilr~~~----~~~Kp~~~~K-s~~r~~L~~~g~~iv~~IGDq~-sDl~g 244 (262)
|.+.+||. -.++++.-+ .-..+....| ..+|..+...+-+-++.|||+- .|.+.
T Consensus 234 i~~~~~P~-GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~~~p~~kfvLVGDsGE~DpeI 293 (373)
T COG4850 234 ITNRNFPY-GPLLLRRWGGVLDNIIESGAARKGQSLRNILRRYPDRKFVLVGDSGEHDPEI 293 (373)
T ss_pred HhcCCCCC-CchhHhhcCCcccccccchhhhcccHHHHHHHhCCCceEEEecCCCCcCHHH
Confidence 88888985 455665321 0011111222 4455556555445567789863 46654
No 153
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.55 E-value=0.00057 Score=61.62 Aligned_cols=73 Identities=23% Similarity=0.299 Sum_probs=60.8
Q ss_pred CCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHH
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~ 187 (262)
+.+..||||+|+||+.... ....+-|.+.+-+++|++.|.-+++-|.-. ++...
T Consensus 120 ~~phVIVfDlD~TLItd~~-----------------------~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~---~eHV~ 173 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEG-----------------------DVRIRDPAVYDSLRELKEQGCVLVLWSYGN---REHVR 173 (297)
T ss_pred CCCcEEEEECCCcccccCC-----------------------ccccCChHHHHHHHHHHHcCCEEEEecCCC---HHHHH
Confidence 4577999999999997521 113456888999999999999999999888 88888
Q ss_pred HHHHhcCCCCcceeEeeCC
Q 024820 188 KNLLFAGYSDWKKLFLRGP 206 (262)
Q Consensus 188 ~nL~~~G~~~~~~Lilr~~ 206 (262)
..|+++|+..+|++++.+.
T Consensus 174 ~sl~~~~L~~~Fd~ii~~G 192 (297)
T PF05152_consen 174 HSLKELKLEGYFDIIICGG 192 (297)
T ss_pred HHHHHhCCccccEEEEeCC
Confidence 9999999999999998764
No 154
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=97.53 E-value=0.00039 Score=60.13 Aligned_cols=100 Identities=17% Similarity=0.199 Sum_probs=77.2
Q ss_pred CCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHH
Q 024820 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~ 188 (262)
+-+++++||-|||-.. ..++||+.|.++.|+..+.+|=|+||-+.+.+....+
T Consensus 6 ~v~gvLlDlSGtLh~e---------------------------~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~ 58 (262)
T KOG3040|consen 6 AVKGVLLDLSGTLHIE---------------------------DAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHE 58 (262)
T ss_pred ccceEEEeccceEecc---------------------------cccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHH
Confidence 5678999999998774 3489999999999999999999999999888888999
Q ss_pred HHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECC-Ccccccccc
Q 024820 189 NLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGD-QWSDLLGFA 246 (262)
Q Consensus 189 nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGD-q~sDl~g~~ 246 (262)
-|.++||..-.+-++.+- ...|.-+++.+++.-..|.| -..||.|-.
T Consensus 59 rL~rlgf~v~eeei~tsl-----------~aa~~~~~~~~lrP~l~v~d~a~~dF~gid 106 (262)
T KOG3040|consen 59 RLQRLGFDVSEEEIFTSL-----------PAARQYLEENQLRPYLIVDDDALEDFDGID 106 (262)
T ss_pred HHHHhCCCccHHHhcCcc-----------HHHHHHHHhcCCCceEEEcccchhhCCCcc
Confidence 999999975333233221 24556666778887666665 556777643
No 155
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=97.53 E-value=0.00014 Score=63.63 Aligned_cols=55 Identities=15% Similarity=0.130 Sum_probs=41.2
Q ss_pred eEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHH
Q 024820 112 AWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLL 191 (262)
Q Consensus 112 aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~ 191 (262)
.|++|+||||+++.+.. +...+.++ ++++|++++++|||+ .....+-+.
T Consensus 1 li~~DlDgTLl~~~~~~---------------------------~~~~~~~~-~~~~gi~~viaTGR~---~~~v~~~~~ 49 (236)
T TIGR02471 1 LIITDLDNTLLGDDEGL---------------------------ASFVELLR-GSGDAVGFGIATGRS---VESAKSRYA 49 (236)
T ss_pred CeEEeccccccCCHHHH---------------------------HHHHHHHH-hcCCCceEEEEeCCC---HHHHHHHHH
Confidence 37899999999853211 11225666 689999999999999 777788888
Q ss_pred hcCCCC
Q 024820 192 FAGYSD 197 (262)
Q Consensus 192 ~~G~~~ 197 (262)
.+++..
T Consensus 50 ~l~l~~ 55 (236)
T TIGR02471 50 KLNLPS 55 (236)
T ss_pred hCCCCC
Confidence 888754
No 156
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=97.48 E-value=0.00037 Score=72.50 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=70.0
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-CC----------------CCCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-DQ----------------GKPA 213 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~----------------~Kp~ 213 (262)
.+|+.|++.+.++.|++.|+++.++||.. +..+....++.|+...+...+.+.+ +. ....
T Consensus 526 ~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~---~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~ 602 (884)
T TIGR01522 526 NDPPRPGVKEAVTTLITGGVRIIMITGDS---QETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARAS 602 (884)
T ss_pred cCcchhHHHHHHHHHHHCCCeEEEECCCC---HHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECC
Confidence 36899999999999999999999999998 7777788888999753332322211 00 1134
Q ss_pred hhhhHHHHHhhhhcCccEEEEECCCcccccccc
Q 024820 214 TVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFA 246 (262)
Q Consensus 214 ~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~ 246 (262)
++.|...-+.+++.|+ +++++||..+|..+.+
T Consensus 603 P~~K~~iv~~lq~~g~-~v~mvGDGvND~pAl~ 634 (884)
T TIGR01522 603 PEHKMKIVKALQKRGD-VVAMTGDGVNDAPALK 634 (884)
T ss_pred HHHHHHHHHHHHHCCC-EEEEECCCcccHHHHH
Confidence 5678888888888774 6899999999998765
No 157
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.43 E-value=6.2e-05 Score=66.35 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=62.3
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeE--eeCCC-CCCCCchhhhHHHHHhhhhcCcc
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLF--LRGPS-DQGKPATVYKSEKRLELVNEGYR 230 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Li--lr~~~-~~~Kp~~~~Ks~~r~~L~~~g~~ 230 (262)
-+|++.++++.|+++|+++ ++||++.... ...+...|...++..+ ..... ..+||.+..-....+.+......
T Consensus 139 ~~~~~~~~l~~l~~~g~~~-i~tN~d~~~~---~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~ 214 (242)
T TIGR01459 139 DLDEFDELFAPIVARKIPN-ICANPDRGIN---QHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKN 214 (242)
T ss_pred CHHHHHHHHHHHHhCCCcE-EEECCCEecc---CCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcc
Confidence 3689999999999999997 8899984433 2345555655444433 23322 36788765333333334211123
Q ss_pred EEEEECCC-cccccccc-ccccEEEe
Q 024820 231 IHGSSGDQ-WSDLLGFA-KAERSFKL 254 (262)
Q Consensus 231 iv~~IGDq-~sDl~g~~-~g~r~fkl 254 (262)
-+++|||+ .+|+.+++ +|.+++.+
T Consensus 215 ~~~~vGD~~~~Di~~a~~~G~~~i~v 240 (242)
T TIGR01459 215 RMLMVGDSFYTDILGANRLGIDTALV 240 (242)
T ss_pred cEEEECCCcHHHHHHHHHCCCeEEEE
Confidence 58899999 59999997 78887653
No 158
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.39 E-value=0.00072 Score=54.40 Aligned_cols=89 Identities=18% Similarity=0.157 Sum_probs=61.5
Q ss_pred eEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHh--cCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHH
Q 024820 112 AWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDL--AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (262)
Q Consensus 112 aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~--~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~n 189 (262)
+|+||.|||+.|...... +. .+|..-+=+.-.+. .+...+|.++++++.++..|+-+...|=.. .....+.
T Consensus 2 ~i~~d~d~t~wdhh~iSs---l~-pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~---~~kA~~a 74 (164)
T COG4996 2 AIVFDADKTLWDHHNISS---LE-PPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNF---EDKAIKA 74 (164)
T ss_pred cEEEeCCCcccccccchh---cC-CcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCc---hHHHHHH
Confidence 799999999998632110 00 11210000111111 135679999999999999999998888877 6678899
Q ss_pred HHhcCCCCcceeEeeCCC
Q 024820 190 LLFAGYSDWKKLFLRGPS 207 (262)
Q Consensus 190 L~~~G~~~~~~Lilr~~~ 207 (262)
|+.+|+..|++.++-.+.
T Consensus 75 Lral~~~~yFhy~ViePh 92 (164)
T COG4996 75 LRALDLLQYFHYIVIEPH 92 (164)
T ss_pred HHHhchhhhEEEEEecCC
Confidence 999999999987776543
No 159
>PLN03017 trehalose-phosphatase
Probab=97.33 E-value=0.00067 Score=63.61 Aligned_cols=58 Identities=21% Similarity=0.069 Sum_probs=42.6
Q ss_pred CCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHH
Q 024820 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTT 186 (262)
Q Consensus 107 ~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T 186 (262)
..++-++++|+||||+.-.. . ...+.+-|++.+.+++|. +|+.++++|||+ +...
T Consensus 108 ~~k~~llflD~DGTL~Piv~-----------~----------p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~---~~~l 162 (366)
T PLN03017 108 RGKQIVMFLDYDGTLSPIVD-----------D----------PDKAFMSSKMRRTVKKLA-KCFPTAIVTGRC---IDKV 162 (366)
T ss_pred cCCCeEEEEecCCcCcCCcC-----------C----------cccccCCHHHHHHHHHHh-cCCcEEEEeCCC---HHHH
Confidence 44667888999999994210 0 013467789999999999 789999999999 5444
Q ss_pred HHH
Q 024820 187 EKN 189 (262)
Q Consensus 187 ~~n 189 (262)
.++
T Consensus 163 ~~~ 165 (366)
T PLN03017 163 YNF 165 (366)
T ss_pred HHh
Confidence 444
No 160
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.10 E-value=0.002 Score=65.96 Aligned_cols=80 Identities=21% Similarity=0.090 Sum_probs=63.0
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCcc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYR 230 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~ 230 (262)
..++.|++.+.++.|+++|++++++||.. +..+....+++|+..+.. - .++-|...-+++++. .
T Consensus 566 ~d~~r~~a~~~i~~L~~~gi~~~llTGd~---~~~a~~ia~~lgi~~~~~---------~--~p~~K~~~v~~l~~~--~ 629 (741)
T PRK11033 566 QDTLRADARQAISELKALGIKGVMLTGDN---PRAAAAIAGELGIDFRAG---------L--LPEDKVKAVTELNQH--A 629 (741)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHcCCCeecC---------C--CHHHHHHHHHHHhcC--C
Confidence 46899999999999999999999999998 778888999999963221 1 123565666666643 3
Q ss_pred EEEEECCCcccccccc
Q 024820 231 IHGSSGDQWSDLLGFA 246 (262)
Q Consensus 231 iv~~IGDq~sDl~g~~ 246 (262)
.+++|||..+|..+.+
T Consensus 630 ~v~mvGDgiNDapAl~ 645 (741)
T PRK11033 630 PLAMVGDGINDAPAMK 645 (741)
T ss_pred CEEEEECCHHhHHHHH
Confidence 6899999999987755
No 161
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.0011 Score=55.30 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=78.5
Q ss_pred eEEEecCCCccCCh---h----HHHHhcc--CCcCCC--------HHHHHHHHHhcC------CCCChHHHHHHHHHHHC
Q 024820 112 AWVFDIDETLLSNL---P----YYAAHGF--GSEIFN--------EDAFDEWVDLAK------APALPASLTFYKELKQL 168 (262)
Q Consensus 112 aiIfDIDgTlldn~---~----y~~~~~~--~~~~~~--------~~~~~~wv~~~~------a~~ipgalell~~Lk~~ 168 (262)
-+.+|||||+.+-. | ++.+.-- ....|+ .+.+.+|.++.+ +..-.++...+..+++.
T Consensus 8 ~~ciDIDGtit~~~t~~~~~n~~f~kslse~d~t~y~lhkil~i~~ee~~k~~e~~ea~l~ke~l~~q~v~~~L~~~~e~ 87 (194)
T COG5663 8 RCCIDIDGTITDDPTFAPYLNPAFEKSLSEADPTDYDLHKILNITTEEFWKWMEQTEAWLYKEALLAQLVKQVLPSLKEE 87 (194)
T ss_pred heeeccCCceecCcccchhccHHHHhhhhhcccccccHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 46799999999841 1 2211100 011122 466777777543 33345566666666665
Q ss_pred CCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECCCcccc-cccc-
Q 024820 169 GFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGDQWSDL-LGFA- 246 (262)
Q Consensus 169 GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl-~g~~- 246 (262)
.+++++|+|.......|-+||....++. +++.+.+.. +|. ...| .+.|-+.+.|+..-. +.++
T Consensus 88 -~~L~~itar~~dl~~iT~~~l~~q~ih~-~~l~i~g~h--~KV-----~~vr------th~idlf~ed~~~na~~iAk~ 152 (194)
T COG5663 88 -HRLIYITARKADLTRITYAWLFIQNIHY-DHLEIVGLH--HKV-----EAVR------THNIDLFFEDSHDNAGQIAKN 152 (194)
T ss_pred -ceeeeeehhhHHHHHHHHHHHHHhccch-hhhhhhccc--ccc-----hhhH------hhccCccccccCchHHHHHHh
Confidence 8899999999888889999999999985 777666532 221 1111 345556677765433 3344
Q ss_pred ccccEEEeC
Q 024820 247 KAERSFKLP 255 (262)
Q Consensus 247 ~g~r~fklP 255 (262)
+|.+++.+-
T Consensus 153 ~~~~vilin 161 (194)
T COG5663 153 AGIPVILIN 161 (194)
T ss_pred cCCcEEEec
Confidence 676665553
No 162
>PLN02151 trehalose-phosphatase
Probab=97.03 E-value=0.0016 Score=60.85 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=45.7
Q ss_pred CCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHH
Q 024820 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTT 186 (262)
Q Consensus 107 ~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T 186 (262)
..++-++++|+||||+.-.+. ...+.+-|++.+.|+.|. ++..++++|||+ +...
T Consensus 95 ~~~~~ll~lDyDGTL~PIv~~---------------------P~~A~~~~~~~~aL~~La-~~~~vaIvSGR~---~~~l 149 (354)
T PLN02151 95 EGKQIVMFLDYDGTLSPIVDD---------------------PDRAFMSKKMRNTVRKLA-KCFPTAIVSGRC---REKV 149 (354)
T ss_pred cCCceEEEEecCccCCCCCCC---------------------cccccCCHHHHHHHHHHh-cCCCEEEEECCC---HHHH
Confidence 446778999999999953210 124677899999999999 457999999999 6666
Q ss_pred HHHHH
Q 024820 187 EKNLL 191 (262)
Q Consensus 187 ~~nL~ 191 (262)
.+++.
T Consensus 150 ~~~~~ 154 (354)
T PLN02151 150 SSFVK 154 (354)
T ss_pred HHHcC
Confidence 66664
No 163
>PRK10671 copA copper exporting ATPase; Provisional
Probab=96.98 E-value=0.0028 Score=65.69 Aligned_cols=82 Identities=24% Similarity=0.306 Sum_probs=63.5
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCcc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYR 230 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~ 230 (262)
.+++.|++.+.++.|++.|++++++||.+ +..+...++++|+..+ + .+- .++.|....++++..|.
T Consensus 648 ~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~---~~~a~~ia~~lgi~~~---~-~~~------~p~~K~~~i~~l~~~~~- 713 (834)
T PRK10671 648 RDPLRSDSVAALQRLHKAGYRLVMLTGDN---PTTANAIAKEAGIDEV---I-AGV------LPDGKAEAIKRLQSQGR- 713 (834)
T ss_pred cCcchhhHHHHHHHHHHCCCeEEEEcCCC---HHHHHHHHHHcCCCEE---E-eCC------CHHHHHHHHHHHhhcCC-
Confidence 46889999999999999999999999988 7777788889999642 2 111 12356666666766553
Q ss_pred EEEEECCCcccccccc
Q 024820 231 IHGSSGDQWSDLLGFA 246 (262)
Q Consensus 231 iv~~IGDq~sDl~g~~ 246 (262)
.+++|||..+|+.+.+
T Consensus 714 ~v~~vGDg~nD~~al~ 729 (834)
T PRK10671 714 QVAMVGDGINDAPALA 729 (834)
T ss_pred EEEEEeCCHHHHHHHH
Confidence 5889999999998765
No 164
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=96.97 E-value=0.0013 Score=66.98 Aligned_cols=63 Identities=19% Similarity=0.195 Sum_probs=48.4
Q ss_pred CCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHH-CCCeEEEEccCccccHHHH
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQ-LGFKIFLLTGRNEFQRNTT 186 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~-~GikI~~vTgR~e~~r~~T 186 (262)
.++..|+||+||||++.... .....+-+.+.+.++.|.+ .|+.|+++|||+ +...
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~---------------------~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~---~~~l 545 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPD---------------------PELAVPDKELRDLLRRLAADPNTDVAIISGRD---RDTL 545 (726)
T ss_pred ccceEEEEecCccccCCCCC---------------------cccCCCCHHHHHHHHHHHcCCCCeEEEEeCCC---HHHH
Confidence 45789999999999985210 1124566899999999999 499999999999 6666
Q ss_pred HHHHHhcC
Q 024820 187 EKNLLFAG 194 (262)
Q Consensus 187 ~~nL~~~G 194 (262)
.+++...+
T Consensus 546 ~~~~~~~~ 553 (726)
T PRK14501 546 ERWFGDLP 553 (726)
T ss_pred HHHhCCCC
Confidence 67765444
No 165
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=96.95 E-value=0.0029 Score=66.73 Aligned_cols=90 Identities=17% Similarity=0.116 Sum_probs=66.7
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcc------------------------eeEeeCC
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWK------------------------KLFLRGP 206 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~------------------------~Lilr~~ 206 (262)
.+|+.|++.+.+++|+++|+++.++|||. ........++.|+-.-. .+++.+.
T Consensus 566 ~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~---~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~ 642 (997)
T TIGR01106 566 IDPPRAAVPDAVGKCRSAGIKVIMVTGDH---PITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGS 642 (997)
T ss_pred cCCChHHHHHHHHHHHHCCCeEEEECCCC---HHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhH
Confidence 47999999999999999999999999999 55666677778873210 1344432
Q ss_pred CCC-------------------CCCchhhhHHHHHhhhhcCccEEEEECCCcccccc
Q 024820 207 SDQ-------------------GKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLG 244 (262)
Q Consensus 207 ~~~-------------------~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g 244 (262)
.-. .+..|+.|..+-+.+++.|+ +++++||..+|..+
T Consensus 643 ~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~-vv~~~GDG~ND~pa 698 (997)
T TIGR01106 643 DLKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGA-IVAVTGDGVNDSPA 698 (997)
T ss_pred HhhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCC-EEEEECCCcccHHH
Confidence 100 11235678888888888887 78999999999865
No 166
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=96.92 E-value=0.0033 Score=66.02 Aligned_cols=90 Identities=21% Similarity=0.250 Sum_probs=66.2
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCC-----------------CCCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQ-----------------GKPA 213 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~-----------------~Kp~ 213 (262)
.+|+.|++.+.++.|++.|+++.++||-. .......=++.|+..-...++.+.+.. ..-.
T Consensus 577 ~Dplr~~~~~aI~~l~~aGI~v~miTGD~---~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~s 653 (941)
T TIGR01517 577 KDPLRPGVREAVQECQRAGITVRMVTGDN---IDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSS 653 (941)
T ss_pred cCCCchhHHHHHHHHHHCCCEEEEECCCC---hHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECC
Confidence 47999999999999999999999999987 444455556679864222333332100 1123
Q ss_pred hhhhHHHHHhhhhcCccEEEEECCCcccccc
Q 024820 214 TVYKSEKRLELVNEGYRIHGSSGDQWSDLLG 244 (262)
Q Consensus 214 ~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g 244 (262)
|+.|...-+.+++.|+ +++++||..||..+
T Consensus 654 Pe~K~~iV~~lq~~g~-vVam~GDGvNDapA 683 (941)
T TIGR01517 654 PLDKQLLVLMLKDMGE-VVAVTGDGTNDAPA 683 (941)
T ss_pred HHHHHHHHHHHHHCCC-EEEEECCCCchHHH
Confidence 5788888888988887 78999999999865
No 167
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.0019 Score=58.11 Aligned_cols=61 Identities=20% Similarity=0.185 Sum_probs=49.0
Q ss_pred CCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHC-CCeEEEEccCccccHHH
Q 024820 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQL-GFKIFLLTGRNEFQRNT 185 (262)
Q Consensus 107 ~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~-GikI~~vTgR~e~~r~~ 185 (262)
..++.+++||.||||.+-.++ ...+++.++++++|+.|.++ ...++++|||+ .+.
T Consensus 15 ~a~~~~~~lDyDGTl~~i~~~---------------------p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~---~~~ 70 (266)
T COG1877 15 NARKRLLFLDYDGTLTEIVPH---------------------PEAAVPDDRLLSLLQDLASDPRNVVAIISGRS---LAE 70 (266)
T ss_pred cccceEEEEeccccccccccC---------------------ccccCCCHHHHHHHHHHHhcCCCeEEEEeCCC---HHH
Confidence 347889999999999997542 12578999999999999988 45799999999 666
Q ss_pred HHHHHH
Q 024820 186 TEKNLL 191 (262)
Q Consensus 186 T~~nL~ 191 (262)
...++.
T Consensus 71 l~~~~~ 76 (266)
T COG1877 71 LERLFG 76 (266)
T ss_pred HHHhcC
Confidence 666665
No 168
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.0094 Score=50.73 Aligned_cols=94 Identities=13% Similarity=-0.059 Sum_probs=56.8
Q ss_pred cCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcC----CCCc----ceeEeeCCCCC----C--CCchh
Q 024820 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAG----YSDW----KKLFLRGPSDQ----G--KPATV 215 (262)
Q Consensus 150 ~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G----~~~~----~~Lilr~~~~~----~--Kp~~~ 215 (262)
..+..=||.+++++.+++++++++++|+-.+..-. .-|...+ +..- .+..+..++.. . .+...
T Consensus 70 k~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~---~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~ 146 (220)
T COG4359 70 KDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIY---PLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGH 146 (220)
T ss_pred hhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHH---HHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCC
Confidence 34777899999999999999999999998754322 2333323 2210 01122211110 0 01112
Q ss_pred hhHHHHHhhhhcCccEEEEECCCccccccccc
Q 024820 216 YKSEKRLELVNEGYRIHGSSGDQWSDLLGFAK 247 (262)
Q Consensus 216 ~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~~ 247 (262)
-|+..-.++.+ .+.-+.+.||+.+|+.+++.
T Consensus 147 dK~~vI~~l~e-~~e~~fy~GDsvsDlsaakl 177 (220)
T COG4359 147 DKSSVIHELSE-PNESIFYCGDSVSDLSAAKL 177 (220)
T ss_pred CcchhHHHhhc-CCceEEEecCCcccccHhhh
Confidence 34444455543 45668999999999999873
No 169
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=96.86 E-value=0.0011 Score=54.31 Aligned_cols=128 Identities=16% Similarity=0.130 Sum_probs=62.4
Q ss_pred ceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHH
Q 024820 111 DAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNL 190 (262)
Q Consensus 111 ~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL 190 (262)
+.+|||+||||+++...... +.+...- .-........-||+.+||+.+.+. ++|++.|+..+.+.....+.|
T Consensus 1 k~LVlDLD~TLv~~~~~~~~------~~~~~~~-~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~l 72 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPL------PYDFKII-DQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDAL 72 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCT------T-SEEEE-TEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHH
T ss_pred CEEEEeCCCcEEEEeecCCC------Cccccee-ccccceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhh
Confidence 47999999999997532100 0000000 000001244679999999999555 999999999965555555555
Q ss_pred HhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcC--ccEEEEECCCccccccccccccEEEeC
Q 024820 191 LFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEG--YRIHGSSGDQWSDLLGFAKAERSFKLP 255 (262)
Q Consensus 191 ~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g--~~iv~~IGDq~sDl~g~~~g~r~fklP 255 (262)
...+-. ....+.+......+. .+. +.|...| ..-++.|+|+..-+.... ...+.+|
T Consensus 73 dp~~~~-~~~~~~r~~~~~~~~--~~~----KdL~~l~~~~~~vvivDD~~~~~~~~~--~N~i~v~ 130 (159)
T PF03031_consen 73 DPNGKL-FSRRLYRDDCTFDKG--SYI----KDLSKLGRDLDNVVIVDDSPRKWALQP--DNGIPVP 130 (159)
T ss_dssp TTTTSS-EEEEEEGGGSEEETT--EEE------GGGSSS-GGGEEEEES-GGGGTTSG--GGEEE--
T ss_pred hhhccc-ccccccccccccccc--ccc----cchHHHhhccccEEEEeCCHHHeeccC--CceEEec
Confidence 432211 233444432211110 111 3444444 355788999988654432 3344444
No 170
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=96.82 E-value=0.0062 Score=61.58 Aligned_cols=80 Identities=23% Similarity=0.229 Sum_probs=63.6
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCcc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYR 230 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~ 230 (262)
.+++.|++.+.++.|++.|+++.++||-. .......-+++|+.. ++-+ - .|+.|...-+++++.|.
T Consensus 444 ~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~---~~ta~~iA~~lGI~~---v~a~-----~--~PedK~~~v~~lq~~g~- 509 (675)
T TIGR01497 444 KDIVKGGIKERFAQLRKMGIKTIMITGDN---RLTAAAIAAEAGVDD---FIAE-----A--TPEDKIALIRQEQAEGK- 509 (675)
T ss_pred cccchhHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHcCCCE---EEcC-----C--CHHHHHHHHHHHHHcCC-
Confidence 46899999999999999999999999987 666667777889954 2211 1 24678777778877664
Q ss_pred EEEEECCCcccccc
Q 024820 231 IHGSSGDQWSDLLG 244 (262)
Q Consensus 231 iv~~IGDq~sDl~g 244 (262)
+++++||..+|..+
T Consensus 510 ~VamvGDG~NDapA 523 (675)
T TIGR01497 510 LVAMTGDGTNDAPA 523 (675)
T ss_pred eEEEECCCcchHHH
Confidence 78999999999865
No 171
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=96.82 E-value=0.002 Score=56.85 Aligned_cols=50 Identities=30% Similarity=0.380 Sum_probs=38.8
Q ss_pred CCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHC-CCeEEEEccCc
Q 024820 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQL-GFKIFLLTGRN 179 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~-GikI~~vTgR~ 179 (262)
++.+++||+||||+...+. ...+.+-|++.+.|+.|.+. +..|+++|||+
T Consensus 2 ~~~~l~lD~DGTL~~~~~~---------------------p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~ 52 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPD---------------------PDAAVVSDRLLTILQKLAARPHNAIWIISGRK 52 (244)
T ss_pred CcEEEEEecCccccCCcCC---------------------CcccCCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 4668999999999974210 11356789999999999777 56789999997
No 172
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.0046 Score=62.80 Aligned_cols=80 Identities=30% Similarity=0.276 Sum_probs=63.6
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCcc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYR 230 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~ 230 (262)
.+++.|++.+.++.|+++|++++++||=. +...+..=+++|+..+..- - -|+-|.+.-++|+++| +
T Consensus 535 ~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn---~~~A~~iA~~lGId~v~Ae--------l--lPedK~~~V~~l~~~g-~ 600 (713)
T COG2217 535 ADELRPDAKEAIAALKALGIKVVMLTGDN---RRTAEAIAKELGIDEVRAE--------L--LPEDKAEIVRELQAEG-R 600 (713)
T ss_pred eCCCChhHHHHHHHHHHCCCeEEEEcCCC---HHHHHHHHHHcChHhhecc--------C--CcHHHHHHHHHHHhcC-C
Confidence 47889999999999999999999999987 6666677778899653211 1 1357888888888766 6
Q ss_pred EEEEECCCcccccc
Q 024820 231 IHGSSGDQWSDLLG 244 (262)
Q Consensus 231 iv~~IGDq~sDl~g 244 (262)
.+++|||..||--+
T Consensus 601 ~VamVGDGINDAPA 614 (713)
T COG2217 601 KVAMVGDGINDAPA 614 (713)
T ss_pred EEEEEeCCchhHHH
Confidence 78999999999754
No 173
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=96.74 E-value=0.0081 Score=60.78 Aligned_cols=80 Identities=21% Similarity=0.196 Sum_probs=62.9
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCcc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYR 230 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~ 230 (262)
.+|+.|++.+.+++|++.|++++.+||-. .......=++.|+.. ++-+ -.|+.|...-++++++| +
T Consensus 439 ~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn---~~TA~aIA~elGI~~---v~A~-------~~PedK~~iV~~lQ~~G-~ 504 (673)
T PRK14010 439 KDVIKDGLVERFRELREMGIETVMCTGDN---ELTAATIAKEAGVDR---FVAE-------CKPEDKINVIREEQAKG-H 504 (673)
T ss_pred ecCCcHHHHHHHHHHHHCCCeEEEECCCC---HHHHHHHHHHcCCce---EEcC-------CCHHHHHHHHHHHHhCC-C
Confidence 47999999999999999999999999987 545555556789964 2211 13578888888888877 5
Q ss_pred EEEEECCCcccccc
Q 024820 231 IHGSSGDQWSDLLG 244 (262)
Q Consensus 231 iv~~IGDq~sDl~g 244 (262)
+++++||..||-.+
T Consensus 505 ~VaMtGDGvNDAPA 518 (673)
T PRK14010 505 IVAMTGDGTNDAPA 518 (673)
T ss_pred EEEEECCChhhHHH
Confidence 78999999999754
No 174
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=96.68 E-value=0.00066 Score=60.57 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-C---CCCCchhhhHHHHHhhhhcCcc
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-D---QGKPATVYKSEKRLELVNEGYR 230 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~---~~Kp~~~~Ks~~r~~L~~~g~~ 230 (262)
++++.+.++.|++.|.+++++||++... ....+...|...+++.+....+ . .+||.+..-....+.+. ....
T Consensus 122 y~~l~~a~~~L~~~~~~~~iatn~~~~~---~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~-~~~~ 197 (257)
T TIGR01458 122 YQILNQAFRLLLDGAKPLLIAIGKGRYY---KRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATG-CEPE 197 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCC---cCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhC-CChh
Confidence 5788888999999999999999988432 2233344455444443332222 1 25776642222222332 1234
Q ss_pred EEEEECCCc-ccccccc-ccccEEEeC
Q 024820 231 IHGSSGDQW-SDLLGFA-KAERSFKLP 255 (262)
Q Consensus 231 iv~~IGDq~-sDl~g~~-~g~r~fklP 255 (262)
-+++|||+. +|+.+++ +|.+++.+.
T Consensus 198 ~~~~vGD~~~~Di~~a~~~G~~~i~v~ 224 (257)
T TIGR01458 198 EAVMIGDDCRDDVGGAQDCGMRGIQVR 224 (257)
T ss_pred hEEEECCCcHHHHHHHHHcCCeEEEEC
Confidence 589999996 9999987 788888774
No 175
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=96.68 E-value=0.004 Score=63.91 Aligned_cols=89 Identities=19% Similarity=0.198 Sum_probs=64.6
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCc----ceeEeeCCC-----------------CC
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW----KKLFLRGPS-----------------DQ 209 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~----~~Lilr~~~-----------------~~ 209 (262)
.+|+.|++.+.++.|++.|+++.++||-. .......=++.|+..- .++ ..+.. .-
T Consensus 440 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~---~~tA~~IA~~lGI~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~vf 515 (755)
T TIGR01647 440 FDPPRHDTKETIERARHLGVEVKMVTGDH---LAIAKETARRLGLGTNIYTADVL-LKGDNRDDLPSGELGEMVEDADGF 515 (755)
T ss_pred cCCChhhHHHHHHHHHHCCCeEEEECCCC---HHHHHHHHHHcCCCCCCcCHHHh-cCCcchhhCCHHHHHHHHHhCCEE
Confidence 36899999999999999999999999998 5566666677898631 011 00000 01
Q ss_pred CCCchhhhHHHHHhhhhcCccEEEEECCCcccccc
Q 024820 210 GKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLG 244 (262)
Q Consensus 210 ~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g 244 (262)
.+-.|+.|...-+.+++.|+ +++++||..||..+
T Consensus 516 Ar~~Pe~K~~iV~~lq~~G~-~VamvGDGvNDapA 549 (755)
T TIGR01647 516 AEVFPEHKYEIVEILQKRGH-LVGMTGDGVNDAPA 549 (755)
T ss_pred EecCHHHHHHHHHHHHhcCC-EEEEEcCCcccHHH
Confidence 11235678888888888885 68999999999754
No 176
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=96.66 E-value=0.00064 Score=61.24 Aligned_cols=98 Identities=14% Similarity=0.076 Sum_probs=59.0
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEee---C-CCCCCCCchhhhHHHHHhhhhcC
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLR---G-PSDQGKPATVYKSEKRLELVNEG 228 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr---~-~~~~~Kp~~~~Ks~~r~~L~~~g 228 (262)
-.++++.++++.|+++|. ++++||++.... ....+...|...++..+.. . ....+||.+..-....+.+. ..
T Consensus 143 ~~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~--~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~-~~ 218 (279)
T TIGR01452 143 FSYAKLREACAHLREPGC-LFVATNRDPWHP--LSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFS-ID 218 (279)
T ss_pred CCHHHHHHHHHHHhcCCC-EEEEeCCCCCCC--CcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhC-CC
Confidence 347899999999999997 789999884321 1111222344333332221 1 12356886643323333332 12
Q ss_pred ccEEEEECCCc-ccccccc-ccccEEEe
Q 024820 229 YRIHGSSGDQW-SDLLGFA-KAERSFKL 254 (262)
Q Consensus 229 ~~iv~~IGDq~-sDl~g~~-~g~r~fkl 254 (262)
..-+++|||+. +|+.+|+ +|.+++.+
T Consensus 219 ~~~~lmIGD~~~tDI~~A~~aGi~si~V 246 (279)
T TIGR01452 219 PARTLMVGDRLETDILFGHRCGMTTVLV 246 (279)
T ss_pred hhhEEEECCChHHHHHHHHHcCCcEEEE
Confidence 34588899995 9999987 78888765
No 177
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.66 E-value=0.0038 Score=64.77 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=46.6
Q ss_pred CCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHH-HHCCCeEEEEccCccccHHHH
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKEL-KQLGFKIFLLTGRNEFQRNTT 186 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~L-k~~GikI~~vTgR~e~~r~~T 186 (262)
.++.+|++|+||||+...+. ...+-|++.++|+.| .+.|..++++|||+ +...
T Consensus 594 ~~~rlI~LDyDGTLlp~~~~-----------------------~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~---~~~L 647 (854)
T PLN02205 594 TTTRAILLDYDGTLMPQASI-----------------------DKSPSSKSIDILNTLCRDKNNMVFIVSARS---RKTL 647 (854)
T ss_pred hcCeEEEEecCCcccCCccc-----------------------cCCCCHHHHHHHHHHHhcCCCEEEEEeCCC---HHHH
Confidence 35789999999999975320 235568999999998 77899999999999 7777
Q ss_pred HHHHHh
Q 024820 187 EKNLLF 192 (262)
Q Consensus 187 ~~nL~~ 192 (262)
.++|..
T Consensus 648 ~~~f~~ 653 (854)
T PLN02205 648 ADWFSP 653 (854)
T ss_pred HHHhCC
Confidence 777743
No 178
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=96.65 E-value=0.0066 Score=63.22 Aligned_cols=89 Identities=20% Similarity=0.169 Sum_probs=64.8
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCC----------------CCCCch
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSD----------------QGKPAT 214 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~----------------~~Kp~~ 214 (262)
.+|+.|++.+.++.|++.|+++.++||-. .......=++.|+.. .+++...+-+ -..-.|
T Consensus 513 ~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~---~~tA~aIA~~lGI~~-~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~P 588 (867)
T TIGR01524 513 LDPPKESTKEAIAALFKNGINVKVLTGDN---EIVTARICQEVGIDA-NDFLLGADIEELSDEELARELRKYHIFARLTP 588 (867)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHcCCCC-CCeeecHhhhhCCHHHHHHHhhhCeEEEECCH
Confidence 47999999999999999999999999976 445555567789963 2222211100 011235
Q ss_pred hhhHHHHHhhhhcCccEEEEECCCcccccc
Q 024820 215 VYKSEKRLELVNEGYRIHGSSGDQWSDLLG 244 (262)
Q Consensus 215 ~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g 244 (262)
+.|...-+.+++.|+ +++++||..||..+
T Consensus 589 e~K~~iV~~lq~~G~-vVam~GDGvNDapA 617 (867)
T TIGR01524 589 MQKSRIIGLLKKAGH-TVGFLGDGINDAPA 617 (867)
T ss_pred HHHHHHHHHHHhCCC-EEEEECCCcccHHH
Confidence 688888888888886 68999999999865
No 179
>PLN02580 trehalose-phosphatase
Probab=96.65 E-value=0.0044 Score=58.61 Aligned_cols=61 Identities=21% Similarity=0.221 Sum_probs=47.3
Q ss_pred CCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHH
Q 024820 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTT 186 (262)
Q Consensus 107 ~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T 186 (262)
..++-+++||.||||..-.+ . -..+.+-|++.+.++.|.+. .++++||||+ ++..
T Consensus 116 ~~k~~~LfLDyDGTLaPIv~---------~------------Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~---~~~L 170 (384)
T PLN02580 116 KGKKIALFLDYDGTLSPIVD---------D------------PDRALMSDAMRSAVKNVAKY-FPTAIISGRS---RDKV 170 (384)
T ss_pred hcCCeEEEEecCCccCCCCC---------C------------cccccCCHHHHHHHHHHhhC-CCEEEEeCCC---HHHH
Confidence 34677899999999986321 0 12467789999999999988 5899999999 7777
Q ss_pred HHHHHh
Q 024820 187 EKNLLF 192 (262)
Q Consensus 187 ~~nL~~ 192 (262)
.+++.-
T Consensus 171 ~~~l~~ 176 (384)
T PLN02580 171 YELVGL 176 (384)
T ss_pred HHHhCC
Confidence 777754
No 180
>PLN02382 probable sucrose-phosphatase
Probab=96.63 E-value=0.007 Score=57.86 Aligned_cols=64 Identities=13% Similarity=0.047 Sum_probs=43.4
Q ss_pred CCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHH
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTE 187 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~ 187 (262)
..+..|+.||||||+++.. .+....+...++++++.++|+.++++|||+ .....
T Consensus 7 ~~~~lI~sDLDGTLL~~~~-----------------------~~~~s~~~~~~l~~~~~~~gi~fv~aTGR~---~~~~~ 60 (413)
T PLN02382 7 SPRLMIVSDLDHTMVDHHD-----------------------PENLSLLRFNALWEAEYRHDSLLVFSTGRS---PTLYK 60 (413)
T ss_pred CCCEEEEEcCCCcCcCCCC-----------------------ccchhHHHHHHHHHHhhcCCeeEEEEcCCC---HHHHH
Confidence 3466788899999998620 001111233445577899999999999999 66666
Q ss_pred HHHHhcCCCC
Q 024820 188 KNLLFAGYSD 197 (262)
Q Consensus 188 ~nL~~~G~~~ 197 (262)
+.++.+++..
T Consensus 61 ~l~~~~~l~~ 70 (413)
T PLN02382 61 ELRKEKPLLT 70 (413)
T ss_pred HHHHhCCCCC
Confidence 6666677654
No 181
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=96.55 E-value=0.012 Score=61.66 Aligned_cols=92 Identities=21% Similarity=0.209 Sum_probs=65.7
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcce----eEeeCCCC-----------------C
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKK----LFLRGPSD-----------------Q 209 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~----Lilr~~~~-----------------~ 209 (262)
.+|+.|++.+.++.|++.|+++.++||.. ...+....++.|+..... ..+.+..- -
T Consensus 535 ~Dplr~~v~e~I~~l~~aGI~v~miTGD~---~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ 611 (917)
T TIGR01116 535 LDPPRPEVADAIEKCRTAGIRVIMITGDN---KETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLF 611 (917)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEecCCC---HHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEE
Confidence 47899999999999999999999999998 667777788889853111 12222110 0
Q ss_pred CCCchhhhHHHHHhhhhcCccEEEEECCCcccccccc
Q 024820 210 GKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFA 246 (262)
Q Consensus 210 ~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~ 246 (262)
.+..+..|...-+.+++.|+ +++++||..+|..+-+
T Consensus 612 ar~~P~~K~~iV~~lq~~g~-~va~iGDG~ND~~alk 647 (917)
T TIGR01116 612 SRVEPSHKSELVELLQEQGE-IVAMTGDGVNDAPALK 647 (917)
T ss_pred EecCHHHHHHHHHHHHhcCC-eEEEecCCcchHHHHH
Confidence 11124567777777777664 6789999999997654
No 182
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=96.51 E-value=0.0093 Score=63.34 Aligned_cols=90 Identities=18% Similarity=0.126 Sum_probs=66.3
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCc----------ceeEeeCCCCC-----------
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW----------KKLFLRGPSDQ----------- 209 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~----------~~Lilr~~~~~----------- 209 (262)
.+|+.|++.+.++.|++.|+++.++||.. .......-++.|+..- ...++.+..-.
T Consensus 644 ~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~---~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~ 720 (1053)
T TIGR01523 644 YDPPRNESAGAVEKCHQAGINVHMLTGDF---PETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLK 720 (1053)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCC---HHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHh
Confidence 47999999999999999999999999998 5566666677898531 12344432100
Q ss_pred ------CCCchhhhHHHHHhhhhcCccEEEEECCCcccccc
Q 024820 210 ------GKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLG 244 (262)
Q Consensus 210 ------~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g 244 (262)
..-.++.|...-+.+++.|+ +++++||..+|..+
T Consensus 721 ~~~~V~ar~sP~~K~~iV~~lq~~g~-~Vam~GDGvNDapa 760 (1053)
T TIGR01523 721 ALCLVIARCAPQTKVKMIEALHRRKA-FCAMTGDGVNDSPS 760 (1053)
T ss_pred hcCeEEEecCHHHHHHHHHHHHhcCC-eeEEeCCCcchHHH
Confidence 11235678888888888776 67899999999754
No 183
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=96.47 E-value=0.0077 Score=62.97 Aligned_cols=88 Identities=23% Similarity=0.214 Sum_probs=65.2
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-----------------CCCCCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-----------------DQGKPA 213 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-----------------~~~Kp~ 213 (262)
.+|+.|++.+.++.|++.|+++.++||=. .......=++.|+.. .+ ++.+.+ --..-.
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~---~~tA~~IA~~lGI~~-~~-v~~G~el~~l~~~el~~~~~~~~VfAr~s 622 (902)
T PRK10517 548 LDPPKETTAPALKALKASGVTVKILTGDS---ELVAAKVCHEVGLDA-GE-VLIGSDIETLSDDELANLAERTTLFARLT 622 (902)
T ss_pred hCcchhhHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHcCCCc-cC-ceeHHHHHhCCHHHHHHHHhhCcEEEEcC
Confidence 47899999999999999999999999987 555566667789963 22 222211 001123
Q ss_pred hhhhHHHHHhhhhcCccEEEEECCCcccccc
Q 024820 214 TVYKSEKRLELVNEGYRIHGSSGDQWSDLLG 244 (262)
Q Consensus 214 ~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g 244 (262)
|+.|...-+.+++.|+ +++++||..||..+
T Consensus 623 Pe~K~~IV~~Lq~~G~-vVam~GDGvNDaPA 652 (902)
T PRK10517 623 PMHKERIVTLLKREGH-VVGFMGDGINDAPA 652 (902)
T ss_pred HHHHHHHHHHHHHCCC-EEEEECCCcchHHH
Confidence 5788888888888775 68999999999765
No 184
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=96.44 E-value=0.012 Score=59.75 Aligned_cols=80 Identities=25% Similarity=0.279 Sum_probs=62.3
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCcc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYR 230 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~ 230 (262)
.+++.|++.+.+++|++.|+++..+||=. .......=+++|+.. ++-+ -.|+.|...-+++++.| +
T Consensus 443 ~D~~R~~~~eai~~Lr~~GI~vvMiTGDn---~~TA~aIA~elGId~---v~A~-------~~PedK~~iV~~lQ~~G-~ 508 (679)
T PRK01122 443 KDIVKPGIKERFAELRKMGIKTVMITGDN---PLTAAAIAAEAGVDD---FLAE-------ATPEDKLALIRQEQAEG-R 508 (679)
T ss_pred eccCchhHHHHHHHHHHCCCeEEEECCCC---HHHHHHHHHHcCCcE---EEcc-------CCHHHHHHHHHHHHHcC-C
Confidence 46889999999999999999999999977 555555566789954 2211 12567888888888877 4
Q ss_pred EEEEECCCcccccc
Q 024820 231 IHGSSGDQWSDLLG 244 (262)
Q Consensus 231 iv~~IGDq~sDl~g 244 (262)
+++++||..||-.+
T Consensus 509 ~VaMtGDGvNDAPA 522 (679)
T PRK01122 509 LVAMTGDGTNDAPA 522 (679)
T ss_pred eEEEECCCcchHHH
Confidence 68999999999754
No 185
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=96.43 E-value=0.008 Score=51.73 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=48.3
Q ss_pred CCCCceEEEecCCCccCCh-hHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHH
Q 024820 107 GDGKDAWVFDIDETLLSNL-PYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNT 185 (262)
Q Consensus 107 ~~~~~aiIfDIDgTlldn~-~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~ 185 (262)
..+++.+|+||||||++.. +.. ....-.-|++.+||+.+.+ .+.|++-|+.. ...
T Consensus 18 ~~~kklLVLDLDeTLvh~~~~~~--------------------~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~---~~y 73 (195)
T TIGR02245 18 REGKKLLVLDIDYTLFDHRSPAE--------------------TGEELMRPYLHEFLTSAYE-DYDIVIWSATS---MKW 73 (195)
T ss_pred CCCCcEEEEeCCCceEcccccCC--------------------CceEEeCCCHHHHHHHHHh-CCEEEEEecCC---HHH
Confidence 4678999999999999752 100 1123457999999999998 69999999998 445
Q ss_pred HHHHHHhcCC
Q 024820 186 TEKNLLFAGY 195 (262)
Q Consensus 186 T~~nL~~~G~ 195 (262)
....|..+|+
T Consensus 74 a~~~l~~l~~ 83 (195)
T TIGR02245 74 IEIKMTELGV 83 (195)
T ss_pred HHHHHHHhcc
Confidence 5556666665
No 186
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.37 E-value=0.0074 Score=52.78 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=40.6
Q ss_pred CceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHH
Q 024820 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~n 189 (262)
+..|..||||||+... |+ | . .+...+.+|++.|++|+++|+++ +...+.-
T Consensus 7 ~~lIFtDlD~TLl~~~------------ye---~--------~----pA~pv~~el~d~G~~Vi~~SSKT---~aE~~~l 56 (274)
T COG3769 7 PLLIFTDLDGTLLPHS------------YE---W--------Q----PAAPVLLELKDAGVPVILCSSKT---RAEMLYL 56 (274)
T ss_pred ceEEEEcccCcccCCC------------CC---C--------C----ccchHHHHHHHcCCeEEEeccch---HHHHHHH
Confidence 4578889999999932 11 1 1 23456778999999999999999 5555544
Q ss_pred HHhcCCC
Q 024820 190 LLFAGYS 196 (262)
Q Consensus 190 L~~~G~~ 196 (262)
=+.+|.+
T Consensus 57 ~~~l~v~ 63 (274)
T COG3769 57 QKSLGVQ 63 (274)
T ss_pred HHhcCCC
Confidence 4556766
No 187
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=96.20 E-value=0.014 Score=61.04 Aligned_cols=88 Identities=24% Similarity=0.203 Sum_probs=64.7
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-C----------------CCCCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-D----------------QGKPA 213 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~----------------~~Kp~ 213 (262)
.+|+.|++.+.++.|++.|+++.++||=. .......=++.|+.. .+ ++.+.+ + -..-.
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~---~~tA~aIA~~lGI~~-~~-vi~G~el~~~~~~el~~~v~~~~VfAr~s 622 (903)
T PRK15122 548 LDPPKESAAPAIAALRENGVAVKVLTGDN---PIVTAKICREVGLEP-GE-PLLGTEIEAMDDAALAREVEERTVFAKLT 622 (903)
T ss_pred cCccHHHHHHHHHHHHHCCCeEEEECCCC---HHHHHHHHHHcCCCC-CC-ccchHhhhhCCHHHHHHHhhhCCEEEEeC
Confidence 47899999999999999999999999987 555555666789963 22 222211 0 01123
Q ss_pred hhhhHHHHHhhhhcCccEEEEECCCcccccc
Q 024820 214 TVYKSEKRLELVNEGYRIHGSSGDQWSDLLG 244 (262)
Q Consensus 214 ~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g 244 (262)
|+.|...-+.|++.|+ +++++||..||..+
T Consensus 623 Pe~K~~iV~~Lq~~G~-vVamtGDGvNDaPA 652 (903)
T PRK15122 623 PLQKSRVLKALQANGH-TVGFLGDGINDAPA 652 (903)
T ss_pred HHHHHHHHHHHHhCCC-EEEEECCCchhHHH
Confidence 5788888888988775 68999999999755
No 188
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=95.99 E-value=0.017 Score=51.27 Aligned_cols=60 Identities=17% Similarity=0.097 Sum_probs=39.0
Q ss_pred CceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHH
Q 024820 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKN 189 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~n 189 (262)
+..++.|+|||+++..+. .+....++++...+.++.++++|||+ .+...+-
T Consensus 2 ~~ll~sDlD~Tl~~~~~~--------------------------~~~~l~~~l~~~~~~~~~~v~~TGRs---~~~~~~~ 52 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGDDE--------------------------ALARLEELLEQQARPEILFVYVTGRS---LESVLRL 52 (247)
T ss_dssp SEEEEEETBTTTBHCHHH--------------------------HHHHHHHHHHHHHCCGEEEEEE-SS----HHHHHHH
T ss_pred CEEEEEECCCCCcCCCHH--------------------------HHHHHHHHHHHhhCCCceEEEECCCC---HHHHHHH
Confidence 457899999999932211 11222344444557789999999999 8888888
Q ss_pred HHhcCCCCc
Q 024820 190 LLFAGYSDW 198 (262)
Q Consensus 190 L~~~G~~~~ 198 (262)
+++.+++..
T Consensus 53 ~~~~~l~~P 61 (247)
T PF05116_consen 53 LREYNLPQP 61 (247)
T ss_dssp HHHCT-EE-
T ss_pred HHhCCCCCC
Confidence 998888753
No 189
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=95.93 E-value=0.026 Score=50.45 Aligned_cols=163 Identities=20% Similarity=0.169 Sum_probs=97.7
Q ss_pred HHHHHhhhcC---CcccccHHHHHHHHHHHHhhccccc----CCCCceEEEecCCCccCChh--HHHHhccCCcCCCHHH
Q 024820 72 VEFVQKYMTG---EHYLSDSEIVSGYSLKHAKSANVSA----GDGKDAWVFDIDETLLSNLP--YYAAHGFGSEIFNEDA 142 (262)
Q Consensus 72 ~~~v~~y~~~---~~Y~~d~~~v~~~a~~y~~~~~~~~----~~~~~aiIfDIDgTlldn~~--y~~~~~~~~~~~~~~~ 142 (262)
.+|+..|... +....|+..+++....-+.-+.... .+..--|.||-|++|.+-.. .|.+.+. +.
T Consensus 76 ~~Yl~af~v~LFLSan~~DV~~Ai~~G~~Aa~v~~~~~~~~~~~~qlRIAFDgDaVLfsDesE~vy~~~GL-------~~ 148 (264)
T PF06189_consen 76 YPYLKAFNVDLFLSANEDDVQEAIDAGIPAATVLPSPPDDDESDDQLRIAFDGDAVLFSDESERVYQEQGL-------EA 148 (264)
T ss_pred HHHHHHhCCceEeeCCHHHHHHHHHcCCCcEEeecCCCCCCCCCCceEEEEcCCeEeecCcchHhHHhccH-------HH
Confidence 4566666543 2333555555544433222121110 13445699999999998532 3333221 33
Q ss_pred HHHHHHhcCC-----CCChHHHHHHHHHHHC------CCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCC
Q 024820 143 FDEWVDLAKA-----PALPASLTFYKELKQL------GFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGK 211 (262)
Q Consensus 143 ~~~wv~~~~a-----~~ipgalell~~Lk~~------GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~K 211 (262)
|.+....... -|+..-++-|.+++++ =+++++||.|+....+-.++.|+.-|+..-+..+|.+-
T Consensus 149 F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~RvI~TLr~Wgv~vDEafFLgG~----- 223 (264)
T PF06189_consen 149 FHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHERVIRTLRSWGVRVDEAFFLGGL----- 223 (264)
T ss_pred HHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHHHHHHHHHcCCcHhHHHHhCCC-----
Confidence 4443333222 2344555666666654 47899999999776688899999999987445566543
Q ss_pred CchhhhHHHHHhhhhcCccEEEEECCCccccccccccccEEEeC
Q 024820 212 PATVYKSEKRLELVNEGYRIHGSSGDQWSDLLGFAKAERSFKLP 255 (262)
Q Consensus 212 p~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g~~~g~r~fklP 255 (262)
-|....+.+ +.-+.++||..=+.++..+..+..+|
T Consensus 224 ----~K~~vL~~~-----~phIFFDDQ~~H~~~a~~~vps~hVP 258 (264)
T PF06189_consen 224 ----PKGPVLKAF-----RPHIFFDDQDGHLESASKVVPSGHVP 258 (264)
T ss_pred ----chhHHHHhh-----CCCEeecCchhhhhHhhcCCCEEecc
Confidence 233443333 34478999999999887666666666
No 190
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=95.78 E-value=0.048 Score=44.04 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=59.4
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccE
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRI 231 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~i 231 (262)
...++.+.+.++.|++. +.|++.||-. ....++-++-.|++. .. ++.+. +++-|....++|.+. |..
T Consensus 29 Gklf~ev~e~iqeL~d~-V~i~IASgDr---~gsl~~lae~~gi~~-~r-v~a~a------~~e~K~~ii~eLkk~-~~k 95 (152)
T COG4087 29 GKLFSEVSETIQELHDM-VDIYIASGDR---KGSLVQLAEFVGIPV-ER-VFAGA------DPEMKAKIIRELKKR-YEK 95 (152)
T ss_pred cEEcHhhHHHHHHHHHh-heEEEecCCc---chHHHHHHHHcCCce-ee-eeccc------CHHHHHHHHHHhcCC-CcE
Confidence 56788999999999999 9999999975 444455556689875 33 33332 246788888888764 456
Q ss_pred EEEECCCcccccc
Q 024820 232 HGSSGDQWSDLLG 244 (262)
Q Consensus 232 v~~IGDq~sDl~g 244 (262)
+++|||..+|+.+
T Consensus 96 ~vmVGnGaND~la 108 (152)
T COG4087 96 VVMVGNGANDILA 108 (152)
T ss_pred EEEecCCcchHHH
Confidence 7889999999765
No 191
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=95.63 E-value=0.018 Score=50.39 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=28.6
Q ss_pred EEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCC-CeEEEEccCccccHHH
Q 024820 114 VFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLG-FKIFLLTGRNEFQRNT 185 (262)
Q Consensus 114 IfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~G-ikI~~vTgR~e~~r~~ 185 (262)
+||.||||..-.+- ...+.+.|++.++|+.|.+.. ..|+++|||+ ++.
T Consensus 1 ~lDyDGTL~p~~~~---------------------p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~---~~~ 49 (235)
T PF02358_consen 1 FLDYDGTLAPIVDD---------------------PDAAVPPPELRELLRALAADPNNTVAIVSGRS---LDD 49 (235)
T ss_dssp EEE-TTTSS---S----------------------GGG----HHHHHHHHHHHHHSE--EEEE-SS----HHH
T ss_pred CcccCCccCCCCCC---------------------ccccCCCHHHHHHHHHHhccCCCEEEEEEeCC---HHH
Confidence 58999999975320 124788999999999998774 5899999999 555
No 192
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=95.60 E-value=0.058 Score=55.22 Aligned_cols=90 Identities=21% Similarity=0.278 Sum_probs=68.1
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcce----eEeeCCC-CC----------------
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKK----LFLRGPS-DQ---------------- 209 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~----Lilr~~~-~~---------------- 209 (262)
-+||-|++.+.++.+++.|++|..+||-. .+..+..-++.|+....+ ..+.+.. +.
T Consensus 582 ~DPPR~ev~~ai~~c~~aGIrV~mITGD~---~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vF 658 (972)
T KOG0202|consen 582 LDPPRPEVADAIELCRQAGIRVIMITGDN---KETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVF 658 (972)
T ss_pred cCCCchhHHHHHHHHHHcCCEEEEEcCCC---HHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEE
Confidence 37999999999999999999999999988 556666667789876443 3333321 10
Q ss_pred CCCchhhhHHHHHhhhhcCccEEEEECCCcccccc
Q 024820 210 GKPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLG 244 (262)
Q Consensus 210 ~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g 244 (262)
..-.|.+|..+-+.|++.| .++++-||..+|-.+
T Consensus 659 aR~~P~HK~kIVeaLq~~g-eivAMTGDGVNDApA 692 (972)
T KOG0202|consen 659 ARAEPQHKLKIVEALQSRG-EVVAMTGDGVNDAPA 692 (972)
T ss_pred EecCchhHHHHHHHHHhcC-CEEEecCCCccchhh
Confidence 1113568888888998866 699999999999765
No 193
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.059 Score=55.51 Aligned_cols=80 Identities=24% Similarity=0.289 Sum_probs=59.3
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCcc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYR 230 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~ 230 (262)
.++..|++...++.|++.|++++++||-. +.+....=++.|+. .++ . + -+ |..|++.-++|++++ .
T Consensus 721 ~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn---~~aA~svA~~VGi~---~V~-a-e---v~--P~~K~~~Ik~lq~~~-~ 786 (951)
T KOG0207|consen 721 EDQVRPDAALAVAELKSMGIKVVMLTGDN---DAAARSVAQQVGID---NVY-A-E---VL--PEQKAEKIKEIQKNG-G 786 (951)
T ss_pred ccccchhHHHHHHHHHhcCceEEEEcCCC---HHHHHHHHHhhCcc---eEE-e-c---cC--chhhHHHHHHHHhcC-C
Confidence 46788999999999999999999999987 54555555667853 232 1 1 11 357788888998876 5
Q ss_pred EEEEECCCcccccc
Q 024820 231 IHGSSGDQWSDLLG 244 (262)
Q Consensus 231 iv~~IGDq~sDl~g 244 (262)
.+++|||..||--+
T Consensus 787 ~VaMVGDGINDaPA 800 (951)
T KOG0207|consen 787 PVAMVGDGINDAPA 800 (951)
T ss_pred cEEEEeCCCCccHH
Confidence 68999999998643
No 194
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=95.27 E-value=0.048 Score=58.08 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=35.9
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCC
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~ 196 (262)
++|+.|++.+.++.|++.|+++..+||.. .......-++.|+-
T Consensus 654 ~d~lr~~~~~~I~~l~~agi~v~miTGD~---~~TA~~iA~~~gii 696 (1054)
T TIGR01657 654 ENPLKPDTKEVIKELKRASIRTVMITGDN---PLTAVHVARECGIV 696 (1054)
T ss_pred ecCCCccHHHHHHHHHHCCCeEEEECCCC---HHHHHHHHHHcCCC
Confidence 47899999999999999999999999998 44455555667883
No 195
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=95.25 E-value=0.036 Score=57.27 Aligned_cols=66 Identities=12% Similarity=0.040 Sum_probs=48.9
Q ss_pred CCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHC-CCeEEEEccCccccHHHH
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQL-GFKIFLLTGRNEFQRNTT 186 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~-GikI~~vTgR~e~~r~~T 186 (262)
.++.+++||.||||..-.+.. .....+.+-|++.++|+.|.+. +..|++||||+ ++..
T Consensus 505 a~~rll~LDyDGTL~~~~~~~------------------~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~---~~~L 563 (797)
T PLN03063 505 SNNRLLILGFYGTLTEPRNSQ------------------IKEMDLGLHPELKETLKALCSDPKTTVVVLSRSG---KDIL 563 (797)
T ss_pred ccCeEEEEecCccccCCCCCc------------------cccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCC---HHHH
Confidence 356789999999999532100 0012356789999999999865 78999999999 8888
Q ss_pred HHHHHhcC
Q 024820 187 EKNLLFAG 194 (262)
Q Consensus 187 ~~nL~~~G 194 (262)
+++|...+
T Consensus 564 ~~~~~~~~ 571 (797)
T PLN03063 564 DKNFGEYN 571 (797)
T ss_pred HHHhCCCC
Confidence 88886533
No 196
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=95.24 E-value=0.066 Score=45.65 Aligned_cols=96 Identities=15% Similarity=0.068 Sum_probs=57.1
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHH-----HHHHHhcCCCCcceeEeeCCCCCCCCc-hhhhHHHHHhh
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTT-----EKNLLFAGYSDWKKLFLRGPSDQGKPA-TVYKSEKRLEL 224 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T-----~~nL~~~G~~~~~~Lilr~~~~~~Kp~-~~~Ks~~r~~L 224 (262)
+++.+|.+.+.+++.+++|+++++-|+-+-.-++-. .-.|.++ |.+|++.-.. .|.. ..|. .+...+
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~l-fsGyfDttiG-----~KrE~~SY~-kIa~~i 173 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSL-FSGYFDTTIG-----KKRESQSYA-KIAGDI 173 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhh-hcceeecccc-----ccccchhHH-HHHHhc
Confidence 578999999999999999999998888772211100 0011111 2233333211 1111 1232 222222
Q ss_pred hhcCccEEEEECCCcccccccc-ccccEEEe
Q 024820 225 VNEGYRIHGSSGDQWSDLLGFA-KAERSFKL 254 (262)
Q Consensus 225 ~~~g~~iv~~IGDq~sDl~g~~-~g~r~fkl 254 (262)
. .....++.+.|+..-+.++. +|+++..+
T Consensus 174 G-l~p~eilFLSDn~~EL~AA~~vGl~t~l~ 203 (229)
T COG4229 174 G-LPPAEILFLSDNPEELKAAAGVGLATGLA 203 (229)
T ss_pred C-CCchheEEecCCHHHHHHHHhcchheeee
Confidence 1 12346899999999998877 88888776
No 197
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=95.16 E-value=0.11 Score=50.73 Aligned_cols=78 Identities=21% Similarity=0.232 Sum_probs=58.6
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCcc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYR 230 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~ 230 (262)
.+++.|++.+.++.|++.|+++.++||.. +..+...=++.|+. ..-.++.|...-+++++.|+
T Consensus 345 ~d~lr~~~~~~i~~l~~~gi~~~~ltGD~---~~~a~~ia~~lgi~-------------~~~~p~~K~~~v~~l~~~g~- 407 (499)
T TIGR01494 345 EDPLRDDAKETISELREAGIRVIMLTGDN---VLTAKAIAKELGIF-------------ARVTPEEKAALVEALQKKGR- 407 (499)
T ss_pred cCCCchhHHHHHHHHHHCCCeEEEEcCCC---HHHHHHHHHHcCce-------------eccCHHHHHHHHHHHHHCCC-
Confidence 46899999999999999999999999998 44444444455751 01135678777777777774
Q ss_pred EEEEECCCccccccc
Q 024820 231 IHGSSGDQWSDLLGF 245 (262)
Q Consensus 231 iv~~IGDq~sDl~g~ 245 (262)
.++++||..+|..+-
T Consensus 408 ~v~~vGDg~nD~~al 422 (499)
T TIGR01494 408 VVAMTGDGVNDAPAL 422 (499)
T ss_pred EEEEECCChhhHHHH
Confidence 578999999998653
No 198
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=95.16 E-value=0.086 Score=55.37 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=68.0
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcc--eeEeeCCCCC-----------------CC
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWK--KLFLRGPSDQ-----------------GK 211 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~--~Lilr~~~~~-----------------~K 211 (262)
.+||-+++.+.++.|++.|+++..+||=. .......=++.|+..-. .+++.+..-. .+
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~---~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfAR 621 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDH---VETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFAR 621 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCC---HHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEE
Confidence 48999999999999999999999999976 55555555678987532 3455553210 11
Q ss_pred CchhhhHHHHHhhhhcCccEEEEECCCcccccc
Q 024820 212 PATVYKSEKRLELVNEGYRIHGSSGDQWSDLLG 244 (262)
Q Consensus 212 p~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g 244 (262)
-.|+.|...-+.+++.|+ ++++.||..||.-+
T Consensus 622 vsP~qK~~IV~~lq~~g~-vVamtGDGvNDapA 653 (917)
T COG0474 622 VSPEQKARIVEALQKSGH-VVAMTGDGVNDAPA 653 (917)
T ss_pred cCHHHHHHHHHHHHhCCC-EEEEeCCCchhHHH
Confidence 236788888899998875 68999999999865
No 199
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=94.99 E-value=0.052 Score=56.82 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=50.7
Q ss_pred CCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHC-CCeEEEEccCccccHHHH
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQL-GFKIFLLTGRNEFQRNTT 186 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~-GikI~~vTgR~e~~r~~T 186 (262)
.++.+++||.||||..-.+.-.. ...-+....+.+-|+++++|+.|.+. +..|++||||+ ++..
T Consensus 589 a~~RLlfLDyDGTLap~~~~P~~------------~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~---~~~L 653 (934)
T PLN03064 589 SNNRLLILGFNATLTEPVDTPGR------------RGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSD---RSVL 653 (934)
T ss_pred ccceEEEEecCceeccCCCCccc------------ccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCC---HHHH
Confidence 35678999999999974321000 00001112456779999999999875 78999999999 8888
Q ss_pred HHHHHhcCC
Q 024820 187 EKNLLFAGY 195 (262)
Q Consensus 187 ~~nL~~~G~ 195 (262)
.+||...++
T Consensus 654 e~~fg~~~L 662 (934)
T PLN03064 654 DENFGEFDM 662 (934)
T ss_pred HHHhCCCCc
Confidence 888866443
No 200
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=94.99 E-value=0.11 Score=47.79 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=46.9
Q ss_pred CCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHC----CCeEEEEccCcccc-
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQL----GFKIFLLTGRNEFQ- 182 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~----GikI~~vTgR~e~~- 182 (262)
...=+++|||||+|+.. ..++|++.+.++.|.++ .+..+|+||-.--.
T Consensus 33 ~~~fgfafDIDGVL~RG---------------------------~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E 85 (389)
T KOG1618|consen 33 PPTFGFAFDIDGVLFRG---------------------------HRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILE 85 (389)
T ss_pred CCceeEEEecccEEEec---------------------------CCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcch
Confidence 35568999999999874 57889999999999988 89999999976433
Q ss_pred HHHHHHHHHhcCCCC
Q 024820 183 RNTTEKNLLFAGYSD 197 (262)
Q Consensus 183 r~~T~~nL~~~G~~~ 197 (262)
+.-+.+.=..+|+..
T Consensus 86 ~~rA~~lS~~Lgv~V 100 (389)
T KOG1618|consen 86 SSRAQELSALLGVEV 100 (389)
T ss_pred hhHHHHHHHhhCCcc
Confidence 333333334567754
No 201
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=94.30 E-value=0.12 Score=48.65 Aligned_cols=115 Identities=24% Similarity=0.226 Sum_probs=66.0
Q ss_pred CCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccH---
Q 024820 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQR--- 183 (262)
Q Consensus 107 ~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r--- 183 (262)
..+.+-+.||+|||+++|.+-. .| +-++.+| ....|.+..=++.|.+.|++++|-|+.....|
T Consensus 72 ~~~~K~i~FD~dgtlI~t~sg~---vf---~~~~~dw--------~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~ 137 (422)
T KOG2134|consen 72 NGGSKIIMFDYDGTLIDTKSGK---VF---PKGSMDW--------RILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKL 137 (422)
T ss_pred CCCcceEEEecCCceeecCCcc---ee---eccCccc--------eeeccccchhhhhhccCCeEEEEEecccccccCcc
Confidence 3467789999999999985411 01 0112333 45567777778899999999999998764322
Q ss_pred ------HHHHHHHHhcCCCCcceeEeeC-CCCCCCCchhhhHHHHHhhhhcCccE----EEEECCC
Q 024820 184 ------NTTEKNLLFAGYSDWKKLFLRG-PSDQGKPATVYKSEKRLELVNEGYRI----HGSSGDQ 238 (262)
Q Consensus 184 ------~~T~~nL~~~G~~~~~~Lilr~-~~~~~Kp~~~~Ks~~r~~L~~~g~~i----v~~IGDq 238 (262)
.-....+.++|+|. .++... .+.-+||-. .-..-...+...+++| ..++||-
T Consensus 138 ~~~~f~~Ki~~i~anl~vPi--~~~~A~~~~~yRKP~t-GMwe~~~~~~nd~~~Isek~s~fvgda 200 (422)
T KOG2134|consen 138 ELEEFKKKIKAIVANLGVPI--QLLAAIIKGKYRKPST-GMWEFLKRLENDSVEISEKASIFVGDA 200 (422)
T ss_pred hHHHHHHHHHHHHHhcCCce--EEeeeccCCcccCcch-hHHHHHHHHhhccceeeechhhhhhhh
Confidence 22234555678874 333222 223455532 2222333344556664 2355553
No 202
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=93.80 E-value=0.13 Score=49.81 Aligned_cols=51 Identities=22% Similarity=0.241 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhc------CCCCcceeEeeC
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFA------GYSDWKKLFLRG 205 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~------G~~~~~~Lilr~ 205 (262)
-|....+|++|++.|.++|++||.+-..-+.....|--- .+..+|++++..
T Consensus 185 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~ 241 (448)
T PF05761_consen 185 DPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVD 241 (448)
T ss_dssp -CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES
T ss_pred CchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEc
Confidence 478899999999999999999999966666666666444 444567776654
No 203
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=93.10 E-value=1.7 Score=42.77 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=25.9
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHh-cCCC
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF-AGYS 196 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~-~G~~ 196 (262)
..|.+.+. +++.|.. +++|+.+ +...+.++++ +|+.
T Consensus 111 l~~~a~~~---~~~~g~~-vvVSASp---~~~Vepfa~~~LGid 147 (497)
T PLN02177 111 VHPETWRV---FNSFGKR-YIITASP---RIMVEPFVKTFLGAD 147 (497)
T ss_pred cCHHHHHH---HHhCCCE-EEEECCc---HHHHHHHHHHcCCCC
Confidence 44555553 4567754 9999999 7778888876 7886
No 204
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.48 E-value=0.84 Score=44.41 Aligned_cols=119 Identities=19% Similarity=0.154 Sum_probs=68.1
Q ss_pred CCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHH
Q 024820 107 GDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTT 186 (262)
Q Consensus 107 ~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T 186 (262)
+..++|.|+|+|+||.-..- ...+..+-... ..++.+++..-.+++..|+++|+-+++.|-..+ ...
T Consensus 219 g~~kK~LVLDLDNTLWGGVI--GedGv~GI~Ls--------~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~---~da 285 (574)
T COG3882 219 GKSKKALVLDLDNTLWGGVI--GEDGVDGIRLS--------NSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTE---KDA 285 (574)
T ss_pred CcccceEEEecCCccccccc--ccccccceeec--------CCCCchhHHHHHHHHHHHHhccEEEEEecCCch---hhH
Confidence 56789999999999986521 11111110010 123467777888999999999999999998874 344
Q ss_pred HHHHHhcCCCCcceeEeeCCCCC-CCCchhhhH-HHHHhhh--hcCccEEEEECCCccccc
Q 024820 187 EKNLLFAGYSDWKKLFLRGPSDQ-GKPATVYKS-EKRLELV--NEGYRIHGSSGDQWSDLL 243 (262)
Q Consensus 187 ~~nL~~~G~~~~~~Lilr~~~~~-~Kp~~~~Ks-~~r~~L~--~~g~~iv~~IGDq~sDl~ 243 (262)
.+-++++- +.+++.++.. .+-.=..|+ .+|+-.. ..|..-.++++|++.-..
T Consensus 286 ~evF~khp-----~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~ErE 341 (574)
T COG3882 286 KEVFRKHP-----DMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAERE 341 (574)
T ss_pred HHHHhhCC-----CeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHHHH
Confidence 44555442 3555544311 000001121 2222222 236667888999886443
No 205
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=92.42 E-value=0.15 Score=36.47 Aligned_cols=46 Identities=15% Similarity=0.040 Sum_probs=29.9
Q ss_pred CCCchhhhHHHHHhhhhcCccEEEEECCC-cccccccc-ccccEEEeCC
Q 024820 210 GKPATVYKSEKRLELVNEGYRIHGSSGDQ-WSDLLGFA-KAERSFKLPN 256 (262)
Q Consensus 210 ~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq-~sDl~g~~-~g~r~fklPN 256 (262)
+||.+..-....+.+.. ...-+++|||+ .+|+.+++ +|.+++.+..
T Consensus 3 gKP~p~~~~~a~~~~~~-~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~t 50 (75)
T PF13242_consen 3 GKPSPGMLEQALKRLGV-DPSRCVMVGDSLETDIEAAKAAGIDTILVLT 50 (75)
T ss_dssp STTSHHHHHHHHHHHTS-GGGGEEEEESSTTTHHHHHHHTTSEEEEESS
T ss_pred CCCcHHHHHHHHHHcCC-CHHHEEEEcCCcHhHHHHHHHcCCcEEEECC
Confidence 56765433233333321 12357889999 99999998 7888887754
No 206
>PLN02645 phosphoglycolate phosphatase
Probab=91.07 E-value=0.074 Score=48.74 Aligned_cols=91 Identities=14% Similarity=0.082 Sum_probs=48.5
Q ss_pred HHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC-C---CCCCchhhhHHHHHhhhhcCccEEEEEC
Q 024820 161 FYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS-D---QGKPATVYKSEKRLELVNEGYRIHGSSG 236 (262)
Q Consensus 161 ll~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~---~~Kp~~~~Ks~~r~~L~~~g~~iv~~IG 236 (262)
..+.|+.++-.++++||++.... ....+...|...++..+....+ . -+||.+..-....+.+. ....-+++||
T Consensus 178 a~~~l~~~~g~~~i~tn~d~~~~--~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~-~~~~~~~~VG 254 (311)
T PLN02645 178 ATLCIRENPGCLFIATNRDAVTH--LTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFG-IEKSQICMVG 254 (311)
T ss_pred HHHHHhcCCCCEEEEeCCCCCCC--CCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcC-CCcccEEEEc
Confidence 34455543335889999884221 1111223344333333332222 1 25776542222222331 1233588999
Q ss_pred CCc-ccccccc-ccccEEEe
Q 024820 237 DQW-SDLLGFA-KAERSFKL 254 (262)
Q Consensus 237 Dq~-sDl~g~~-~g~r~fkl 254 (262)
|++ +|+.+++ +|.+++.+
T Consensus 255 D~~~~Di~~A~~aG~~~ilV 274 (311)
T PLN02645 255 DRLDTDILFGQNGGCKTLLV 274 (311)
T ss_pred CCcHHHHHHHHHcCCCEEEE
Confidence 998 9999997 78888766
No 207
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=88.73 E-value=1.2 Score=39.21 Aligned_cols=98 Identities=11% Similarity=0.117 Sum_probs=51.1
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEccCcc--ccHHHHHHHHHhcCCCC---c-ceeEeeCCCCCCCCchhhhHHHHHhhhh
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTGRNE--FQRNTTEKNLLFAGYSD---W-KKLFLRGPSDQGKPATVYKSEKRLELVN 226 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTgR~e--~~r~~T~~nL~~~G~~~---~-~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~ 226 (262)
+.++++.+++..++..+..+.++|..++ ..+......++..|+.. + ..+-+.+.+ ..|+ .+.++-++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~-~~K~-----~~l~~l~~~ 210 (272)
T PRK10530 137 PTFTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKG-NSKG-----KRLTQWVEA 210 (272)
T ss_pred cceEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCC-CChH-----HHHHHHHHH
Confidence 3456777888877777766666666442 22334444445555431 0 111111111 1121 233333344
Q ss_pred cCcc--EEEEECCCccccccccccccEEEeCC
Q 024820 227 EGYR--IHGSSGDQWSDLLGFAKAERSFKLPN 256 (262)
Q Consensus 227 ~g~~--iv~~IGDq~sDl~g~~~g~r~fklPN 256 (262)
.|.. .+++|||+.+|+.........+...|
T Consensus 211 ~gi~~~e~i~~GD~~NDi~m~~~ag~~vamgn 242 (272)
T PRK10530 211 QGWSMKNVVAFGDNFNDISMLEAAGLGVAMGN 242 (272)
T ss_pred cCCCHHHeEEeCCChhhHHHHHhcCceEEecC
Confidence 4443 58999999999988762223444444
No 208
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=87.90 E-value=2.2 Score=32.68 Aligned_cols=73 Identities=16% Similarity=0.046 Sum_probs=48.4
Q ss_pred eEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCC----CCCch-hhhHHHHHhhhhc-CccEEEEECCCc-cccc
Q 024820 171 KIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQ----GKPAT-VYKSEKRLELVNE-GYRIHGSSGDQW-SDLL 243 (262)
Q Consensus 171 kI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~----~Kp~~-~~Ks~~r~~L~~~-g~~iv~~IGDq~-sDl~ 243 (262)
.++|||+.+........+-|+..|||. ..++++.-+.. -+... ++|.....++.+. ..+-.+.|||+- .|..
T Consensus 1 pf~YvS~SPwnly~~l~~Fl~~~~~P~-G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP~~kfiLIGDsgq~Dpe 79 (100)
T PF09949_consen 1 PFFYVSNSPWNLYPFLRDFLRRNGFPA-GPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFPERKFILIGDSGQHDPE 79 (100)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhcCCCC-CceEcccCCccccccccCCchhHHHHHHHHHHHHCCCCcEEEEeeCCCcCHH
Confidence 378999999888888899999999997 56788764311 11222 4775555555432 334577899853 4654
Q ss_pred c
Q 024820 244 G 244 (262)
Q Consensus 244 g 244 (262)
.
T Consensus 80 i 80 (100)
T PF09949_consen 80 I 80 (100)
T ss_pred H
Confidence 3
No 209
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=87.20 E-value=0.79 Score=42.92 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccCccc
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGRNEF 181 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR~e~ 181 (262)
--|..+.++.+|+++|.++|++||.+-.
T Consensus 241 r~~ql~~fl~kL~~~GKklFLiTNSPys 268 (510)
T KOG2470|consen 241 RNPQLLAFLRKLKDHGKKLFLITNSPYS 268 (510)
T ss_pred ccHHHHHHHHHHHHhcCcEEEEeCCchh
Confidence 3468889999999999999999999943
No 210
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=86.99 E-value=1.9 Score=46.21 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=27.1
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRN 179 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~ 179 (262)
++++-|++.+.++.|++.|+++.++||=.
T Consensus 629 eD~lq~~v~etI~~L~~AGIkv~mlTGD~ 657 (1057)
T TIGR01652 629 EDKLQEGVPETIELLRQAGIKIWVLTGDK 657 (1057)
T ss_pred hhhhhhccHHHHHHHHHCCCeEEEEcCCc
Confidence 47899999999999999999999999965
No 211
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=86.94 E-value=1.3 Score=43.26 Aligned_cols=33 Identities=15% Similarity=0.044 Sum_probs=27.4
Q ss_pred HHHHHHHCCCeEEEEccCccccHHHHHHHHHh-cCCCC
Q 024820 161 FYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF-AGYSD 197 (262)
Q Consensus 161 ll~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~-~G~~~ 197 (262)
.++..++.| +++++|+.+ |...+.+++. +|...
T Consensus 101 ~~~~~~~~g-~~vVVTAsP---rvmVEpFake~LG~D~ 134 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMP---RVMVERFAKEHLRADE 134 (498)
T ss_pred HHHHHHcCC-eEEEEeCCH---HHHHHHHHHHhcCCce
Confidence 455667788 999999999 8899999998 88863
No 212
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=86.91 E-value=5 Score=34.62 Aligned_cols=89 Identities=17% Similarity=0.119 Sum_probs=64.6
Q ss_pred hHHHHHHHHH-HHCCCeEEEEccCcc-ccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhc--CccE
Q 024820 156 PASLTFYKEL-KQLGFKIFLLTGRNE-FQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNE--GYRI 231 (262)
Q Consensus 156 pgalell~~L-k~~GikI~~vTgR~e-~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~--g~~i 231 (262)
..++++.+.- ++..--.+++|||.| ...+...+.|...|+.. +.++|++.+....+...||......|... ....
T Consensus 57 e~Iv~la~~S~~~~dtltVLLTGR~e~~F~~lI~~ml~s~~L~F-d~v~LKp~~~~~~sTm~fK~~~l~~ll~~Y~~~~e 135 (197)
T PF10307_consen 57 ENIVELARLSMQDPDTLTVLLTGRRESKFSSLIERMLASKGLEF-DAVCLKPENQRFSSTMDFKQAFLEDLLHTYKNAEE 135 (197)
T ss_pred HHHHHHHHHhhcCCCeeEEEEeCCCchhHHHHHHHHHhcCCCCc-cEEEeCcccccCccccHHHHHHHHHHHHhcCCCCE
Confidence 3677777644 455666789999997 55777778888999984 77888887444555678998888888752 3346
Q ss_pred EEEECCCccccccc
Q 024820 232 HGSSGDQWSDLLGF 245 (262)
Q Consensus 232 v~~IGDq~sDl~g~ 245 (262)
|-+.+|+..=+.+-
T Consensus 136 I~IYeDR~~hvk~F 149 (197)
T PF10307_consen 136 IRIYEDRPKHVKGF 149 (197)
T ss_pred EEEEcCCHHHHHHH
Confidence 77889998866553
No 213
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=85.86 E-value=2 Score=37.35 Aligned_cols=44 Identities=25% Similarity=0.458 Sum_probs=31.8
Q ss_pred CCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCc
Q 024820 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRN 179 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~ 179 (262)
..--++||+||||.-. .....|.+.++++.|+++ +.|.+|-|.+
T Consensus 10 ~~~l~lfdvdgtLt~~--------------------------r~~~~~e~~~~l~~lr~~-v~ig~VggsD 53 (252)
T KOG3189|consen 10 EETLCLFDVDGTLTPP--------------------------RQKVTPEMLEFLQKLRKK-VTIGFVGGSD 53 (252)
T ss_pred CceEEEEecCCccccc--------------------------cccCCHHHHHHHHHHhhh-eEEEEeecHH
Confidence 3346889999999864 234557777777777666 7777777766
No 214
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=85.52 E-value=0.51 Score=39.55 Aligned_cols=18 Identities=33% Similarity=0.231 Sum_probs=15.8
Q ss_pred ceEEEecCCCccCChhHH
Q 024820 111 DAWVFDIDETLLSNLPYY 128 (262)
Q Consensus 111 ~aiIfDIDgTlldn~~y~ 128 (262)
++|+||.||||+++.+..
T Consensus 2 ~~i~fDktGTLt~~~~~v 19 (215)
T PF00702_consen 2 DAICFDKTGTLTQGKMSV 19 (215)
T ss_dssp SEEEEECCTTTBESHHEE
T ss_pred eEEEEecCCCcccCeEEE
Confidence 689999999999997754
No 215
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=84.42 E-value=0.94 Score=39.67 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=28.3
Q ss_pred CCCCchhhhHHHHHhhhhcCccEEEEECCCc-ccccccc-ccccEEEe
Q 024820 209 QGKPATVYKSEKRLELVNEGYRIHGSSGDQW-SDLLGFA-KAERSFKL 254 (262)
Q Consensus 209 ~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~-sDl~g~~-~g~r~fkl 254 (262)
.+||.+..-....+.+....-+.+++|||+. +|+.+++ +|.+++.+
T Consensus 186 ~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v 233 (236)
T TIGR01460 186 VGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLV 233 (236)
T ss_pred ecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEE
Confidence 4566554332333333221223458999998 8999987 78887765
No 216
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=83.05 E-value=0.19 Score=45.26 Aligned_cols=84 Identities=18% Similarity=0.185 Sum_probs=54.5
Q ss_pred CCCCceEEEecCCCccCChhH--H-HHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccH
Q 024820 107 GDGKDAWVFDIDETLLSNLPY--Y-AAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQR 183 (262)
Q Consensus 107 ~~~~~aiIfDIDgTlldn~~y--~-~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r 183 (262)
..+++.+|+|+||||..++.. . ....|.. +...+...-.--....|++-+|+..+-+. +++++-|+-.+.+.
T Consensus 86 ~~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~----~v~~~~~~~~~yV~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya 160 (262)
T KOG1605|consen 86 TVGRKTLVLDLDETLVHSSLNLKPIVNADFTV----PVEIDGHIHQVYVRKRPHVDEFLSRVSKW-YELVLFTASLEVYA 160 (262)
T ss_pred cCCCceEEEeCCCcccccccccCCCCCcceee----eeeeCCcceEEEEEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHH
Confidence 568999999999998876521 0 0001110 00000000011245679999999988877 89999999988888
Q ss_pred HHHHHHHHh-cCC
Q 024820 184 NTTEKNLLF-AGY 195 (262)
Q Consensus 184 ~~T~~nL~~-~G~ 195 (262)
......|.. .|+
T Consensus 161 ~~v~D~LD~~~~i 173 (262)
T KOG1605|consen 161 DPLLDILDPDRKI 173 (262)
T ss_pred HHHHHHccCCCCe
Confidence 888888886 555
No 217
>PLN03190 aminophospholipid translocase; Provisional
Probab=82.65 E-value=8.5 Score=41.83 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=27.0
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRN 179 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~ 179 (262)
++++-+|+.+.++.|++.|+++.++||-.
T Consensus 724 ~D~lr~~v~~~I~~l~~agi~v~mlTGD~ 752 (1178)
T PLN03190 724 EDKLQQGVPEAIESLRTAGIKVWVLTGDK 752 (1178)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCC
Confidence 46899999999999999999999999966
No 218
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=81.96 E-value=5.7 Score=31.69 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=42.6
Q ss_pred eEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECCCcc
Q 024820 171 KIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGDQWS 240 (262)
Q Consensus 171 kI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~s 240 (262)
+||+++||+...++.....|++.|+.. +++......+++ .-+.....+..-++.|+++-.|...
T Consensus 1 kVFIvhg~~~~~~~~v~~~L~~~~~ep---~i~~~~~~~g~t---iie~le~~~~~~~faIvl~TpDD~~ 64 (125)
T PF10137_consen 1 KVFIVHGRDLAAAEAVERFLEKLGLEP---IIWHEQPNLGQT---IIEKLEEAADSVDFAIVLFTPDDIG 64 (125)
T ss_pred CEEEEeCCCHHHHHHHHHHHHhCCCce---EEeecCCCCCCc---hHHHHHHHhccCCEEEEEEcccccc
Confidence 589999999988999999999998854 444433333332 1223334444567888887776554
No 219
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=80.89 E-value=7 Score=38.67 Aligned_cols=79 Identities=25% Similarity=0.331 Sum_probs=54.4
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHH-HhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNL-LFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGY 229 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL-~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~ 229 (262)
++...||++|=+.+|++.|++-+.+||-+ ..|.... .++|.+++ +. ..+ ++-|-..-++-+.+|
T Consensus 445 kDivK~Gi~ERf~elR~MgIkTvM~TGDN----~~TAa~IA~EAGVDdf----iA----eat--PEdK~~~I~~eQ~~g- 509 (681)
T COG2216 445 KDIVKPGIKERFAELRKMGIKTVMITGDN----PLTAAAIAAEAGVDDF----IA----EAT--PEDKLALIRQEQAEG- 509 (681)
T ss_pred hhhcchhHHHHHHHHHhcCCeEEEEeCCC----HHHHHHHHHHhCchhh----hh----cCC--hHHHHHHHHHHHhcC-
Confidence 45667999999999999999999999987 2344444 45788652 12 122 344544434444444
Q ss_pred cEEEEECCCcccccc
Q 024820 230 RIHGSSGDQWSDLLG 244 (262)
Q Consensus 230 ~iv~~IGDq~sDl~g 244 (262)
+.+++.||.-+|--+
T Consensus 510 rlVAMtGDGTNDAPA 524 (681)
T COG2216 510 RLVAMTGDGTNDAPA 524 (681)
T ss_pred cEEEEcCCCCCcchh
Confidence 789999999999743
No 220
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=80.71 E-value=2.9 Score=35.65 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=41.7
Q ss_pred EEEEccCccccHHHHHHHHHhcCCCCcc---eeEeeCCCCCCCCchhhh-HHHHHhhhhcCcc--EEEEECCCccccccc
Q 024820 172 IFLLTGRNEFQRNTTEKNLLFAGYSDWK---KLFLRGPSDQGKPATVYK-SEKRLELVNEGYR--IHGSSGDQWSDLLGF 245 (262)
Q Consensus 172 I~~vTgR~e~~r~~T~~nL~~~G~~~~~---~Lilr~~~~~~Kp~~~~K-s~~r~~L~~~g~~--iv~~IGDq~sDl~g~ 245 (262)
++++++.. .+...+.|++.|+..+. .+.+.+.+ .-| .+.++-+...|.. .+++|||+.+|+...
T Consensus 110 ~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~ei~~~~-------~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml 179 (215)
T TIGR01487 110 VIMREGKD---VDEVREIIKERGLNLVDSGFAIHIMKKG-------VDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLF 179 (215)
T ss_pred EEecCCcc---HHHHHHHHHhCCeEEEecCceEEEecCC-------CChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHH
Confidence 33444443 55667788877764321 11122111 122 2333333444544 488999999999987
Q ss_pred cccccEEEeCCC
Q 024820 246 AKAERSFKLPNP 257 (262)
Q Consensus 246 ~~g~r~fklPNp 257 (262)
......|...|.
T Consensus 180 ~~ag~~vam~na 191 (215)
T TIGR01487 180 RVVGFKVAVANA 191 (215)
T ss_pred HhCCCeEEcCCc
Confidence 744456666553
No 221
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=79.74 E-value=4.8 Score=35.79 Aligned_cols=84 Identities=24% Similarity=0.130 Sum_probs=43.6
Q ss_pred HHHHCCCeEEEE-ccCccccHHHHHHHHHhcCCC----CcceeEeeCCCCCCCCchhhhHHHHHhhhhc--Cc-cEEEEE
Q 024820 164 ELKQLGFKIFLL-TGRNEFQRNTTEKNLLFAGYS----DWKKLFLRGPSDQGKPATVYKSEKRLELVNE--GY-RIHGSS 235 (262)
Q Consensus 164 ~Lk~~GikI~~v-TgR~e~~r~~T~~nL~~~G~~----~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~--g~-~iv~~I 235 (262)
.++..++..+++ -+. ....+...+.|+..|+. .+. +-+.+.+ .|. + +.+.-++.. .. .-+++|
T Consensus 143 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~-~ei~~~~--~Kg----~-al~~l~~~~~i~~~~~v~~~ 213 (273)
T PRK00192 143 LAKDREFSEPFLWNGS-EAAKERFEEALKRLGLKVTRGGRF-LHLLGGG--DKG----K-AVRWLKELYRRQDGVETIAL 213 (273)
T ss_pred HHHhcccCCceeecCc-hHHHHHHHHHHHHcCCEEEECCeE-EEEeCCC--CHH----H-HHHHHHHHHhccCCceEEEE
Confidence 344556665555 232 23366667778777764 211 1122222 221 1 122222222 23 668999
Q ss_pred CCCccccccccccccEEEeCC
Q 024820 236 GDQWSDLLGFAKAERSFKLPN 256 (262)
Q Consensus 236 GDq~sDl~g~~~g~r~fklPN 256 (262)
||+.+|+.........+...|
T Consensus 214 GDs~NDi~m~~~ag~~vam~N 234 (273)
T PRK00192 214 GDSPNDLPMLEAADIAVVVPG 234 (273)
T ss_pred cCChhhHHHHHhCCeeEEeCC
Confidence 999999987764344555555
No 222
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=78.63 E-value=2.4 Score=37.38 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=30.9
Q ss_pred CCCCCchhhhHHHHHhhhhcCccEEEEECCCc-ccccccc-ccccEEEeCC
Q 024820 208 DQGKPATVYKSEKRLELVNEGYRIHGSSGDQW-SDLLGFA-KAERSFKLPN 256 (262)
Q Consensus 208 ~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~-sDl~g~~-~g~r~fklPN 256 (262)
..+||.+..-....+.+. .....+++|||+. +|+.+++ +|.+++.+..
T Consensus 175 ~~gKP~~~~~~~~~~~~~-~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~ 224 (249)
T TIGR01457 175 YIGKPNAIIMEKAVEHLG-TEREETLMVGDNYLTDIRAGIDAGIDTLLVHT 224 (249)
T ss_pred ccCCChHHHHHHHHHHcC-CCcccEEEECCCchhhHHHHHHcCCcEEEEcC
Confidence 356776643323333332 1234589999996 8999997 8888887743
No 223
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=78.62 E-value=6.3 Score=33.58 Aligned_cols=26 Identities=19% Similarity=0.041 Sum_probs=18.6
Q ss_pred cEEEEECCCccccccccccccEEEeC
Q 024820 230 RIHGSSGDQWSDLLGFAKAERSFKLP 255 (262)
Q Consensus 230 ~iv~~IGDq~sDl~g~~~g~r~fklP 255 (262)
..++.|||+.+|+.--......|.+|
T Consensus 196 ~~vi~~GD~~NDi~ml~~ag~~va~~ 221 (221)
T TIGR02463 196 VKTLGLGDGPNDLPLLEVADYAVVIK 221 (221)
T ss_pred CcEEEECCCHHHHHHHHhCCceEEeC
Confidence 35899999999998766333455554
No 224
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=77.19 E-value=11 Score=36.81 Aligned_cols=91 Identities=14% Similarity=0.101 Sum_probs=59.8
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcce-eEeeCCCCCCCC-chhhhHHHHHhhhhcCcc
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKK-LFLRGPSDQGKP-ATVYKSEKRLELVNEGYR 230 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~-Lilr~~~~~~Kp-~~~~Ks~~r~~L~~~g~~ 230 (262)
-|.....++++++.+.|.+|+++|.-.-. -+..++-|.+.|+..+.- ++|.++.--.|. ...+|.-. .++.-...
T Consensus 99 ypn~~~~eL~e~ai~n~krVIlISDMYlp-s~Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vl--k~EnVd~~ 175 (635)
T COG5610 99 YPNKKNIELVEEAIKNEKRVILISDMYLP-SSILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVL--KLENVDPK 175 (635)
T ss_pred eccccchHHHHHHHhCCCeEEEEecccCc-HHHHHHHHHhcCCCccCceeeecceeehhcccchHHHHHH--hhcCCChh
Confidence 34556689999999999999999987532 567778899999986443 566654322221 12344332 23333445
Q ss_pred EEEEECCCcc-cccccc
Q 024820 231 IHGSSGDQWS-DLLGFA 246 (262)
Q Consensus 231 iv~~IGDq~s-Dl~g~~ 246 (262)
-|+.+||+|. |..-++
T Consensus 176 ~w~H~GDN~~aD~l~pk 192 (635)
T COG5610 176 KWIHCGDNWVADYLKPK 192 (635)
T ss_pred heEEecCchhhhhcCcc
Confidence 6999999875 655443
No 225
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=77.11 E-value=6.9 Score=32.21 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=39.2
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCcc--ccHHHHHHHHHh-cCCCCcceeEeeC
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNE--FQRNTTEKNLLF-AGYSDWKKLFLRG 205 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e--~~r~~T~~nL~~-~G~~~~~~Lilr~ 205 (262)
....|++.+.+++|-+. +.|+++|.-.. ..-+.--+||.. +-|-.+..+++++
T Consensus 67 L~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCg 122 (180)
T COG4502 67 LGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCG 122 (180)
T ss_pred cCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEec
Confidence 56789999999999987 99999998732 234455677765 4555567788775
No 226
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=76.97 E-value=3.1 Score=38.27 Aligned_cols=25 Identities=24% Similarity=0.097 Sum_probs=20.3
Q ss_pred cEEEEECCCc-ccccccc-ccccEEEe
Q 024820 230 RIHGSSGDQW-SDLLGFA-KAERSFKL 254 (262)
Q Consensus 230 ~iv~~IGDq~-sDl~g~~-~g~r~fkl 254 (262)
.-+++|||++ +|+.++. +|.+++.+
T Consensus 264 ~~~~mIGD~~~tDI~ga~~~G~~silV 290 (321)
T TIGR01456 264 HALYMVGDNPASDIIGAQNYGWFSCLV 290 (321)
T ss_pred heEEEEcCChhhhhhhHHhCCceEEEe
Confidence 4688999998 9999987 77777654
No 227
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=76.20 E-value=14 Score=38.69 Aligned_cols=90 Identities=21% Similarity=0.210 Sum_probs=58.4
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcce--eEeeCCCCC-----------------CC
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKK--LFLRGPSDQ-----------------GK 211 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~--Lilr~~~~~-----------------~K 211 (262)
++|.-||+.+.++.++..|++|-.+||-. -......-.+-|+-.-+. +.+-+...+ ..
T Consensus 645 kDPvRPgV~~AV~~Cq~AGItVRMVTGDN---I~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlAR 721 (1034)
T KOG0204|consen 645 KDPVRPGVPEAVQLCQRAGITVRMVTGDN---INTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLAR 721 (1034)
T ss_pred cCCCCCCcHHHHHHHHHcCcEEEEEeCCc---HHHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeec
Confidence 58999999999999999999999999987 333333334557643222 333332111 11
Q ss_pred CchhhhHHHHHhhhhcCccEEEEECCCcccccc
Q 024820 212 PATVYKSEKRLELVNEGYRIHGSSGDQWSDLLG 244 (262)
Q Consensus 212 p~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g 244 (262)
..|..|--.-+.|++.| .+++.-||.-+|--+
T Consensus 722 SSP~DK~lLVk~L~~~g-~VVAVTGDGTNDaPA 753 (1034)
T KOG0204|consen 722 SSPNDKHLLVKGLIKQG-EVVAVTGDGTNDAPA 753 (1034)
T ss_pred CCCchHHHHHHHHHhcC-cEEEEecCCCCCchh
Confidence 12334555556666555 588999999999755
No 228
>PRK10444 UMP phosphatase; Provisional
Probab=74.11 E-value=3.2 Score=36.84 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=30.2
Q ss_pred CCCCCchhhhHHHHHhhhhcCccEEEEECCCc-ccccccc-ccccEEEeC
Q 024820 208 DQGKPATVYKSEKRLELVNEGYRIHGSSGDQW-SDLLGFA-KAERSFKLP 255 (262)
Q Consensus 208 ~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~-sDl~g~~-~g~r~fklP 255 (262)
..+||.+..-....+.+. ....-+++|||+. +|+.+++ +|.+++.+.
T Consensus 171 ~~gKP~~~~~~~~~~~~~-~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~ 219 (248)
T PRK10444 171 YVGKPSPWIIRAALNKMQ-AHSEETVIVGDNLRTDILAGFQAGLETILVL 219 (248)
T ss_pred ccCCCCHHHHHHHHHHcC-CCcccEEEECCCcHHHHHHHHHcCCCEEEEC
Confidence 346776543333333332 1234588999997 8999998 788887763
No 229
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=66.31 E-value=22 Score=38.12 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=32.7
Q ss_pred HHHHHHHHHH----HCCCeEEEEccCccccHHHHHHHHHhcCCC--CcceeEeeC
Q 024820 157 ASLTFYKELK----QLGFKIFLLTGRNEFQRNTTEKNLLFAGYS--DWKKLFLRG 205 (262)
Q Consensus 157 galell~~Lk----~~GikI~~vTgR~e~~r~~T~~nL~~~G~~--~~~~Lilr~ 205 (262)
.+.++++.++ ...+-.+|+|||+ ...+.+-|++.|++ . ++.++++
T Consensus 788 ~l~~~~~~~~~~~~~~~igfv~aTGR~---l~~~~~~l~~~~lp~~~-PD~lI~~ 838 (1050)
T TIGR02468 788 IIKNIFEAVRKERMEGSSGFILSTSMT---ISEIQSFLKSGGLNPTD-FDALICN 838 (1050)
T ss_pred HHHHHHHHHhccccCCceEEEEEcCCC---HHHHHHHHHhCCCCCCC-CCEEEeC
Confidence 3455555564 2347889999999 88999999999998 5 4455443
No 230
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=63.36 E-value=34 Score=31.37 Aligned_cols=25 Identities=12% Similarity=0.305 Sum_probs=20.8
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEcc
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTG 177 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTg 177 (262)
..+|...+++++|+++|+++++...
T Consensus 63 ~~FPdp~~mi~~L~~~G~kv~~~i~ 87 (319)
T cd06591 63 ERFPDPKAMVRELHEMNAELMISIW 87 (319)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEec
Confidence 4567889999999999999987653
No 231
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=59.79 E-value=31 Score=30.03 Aligned_cols=89 Identities=18% Similarity=0.077 Sum_probs=46.8
Q ss_pred HCCCeEEEEccCccc--cHHHHHHHHHhcCCCCcceeEeeCCCC-CCCCchhhhH-HHHHhhhhcC--ccEEEEECCCcc
Q 024820 167 QLGFKIFLLTGRNEF--QRNTTEKNLLFAGYSDWKKLFLRGPSD-QGKPATVYKS-EKRLELVNEG--YRIHGSSGDQWS 240 (262)
Q Consensus 167 ~~GikI~~vTgR~e~--~r~~T~~nL~~~G~~~~~~Lilr~~~~-~~Kp~~~~Ks-~~r~~L~~~g--~~iv~~IGDq~s 240 (262)
+.-+++.+....... ......+.|.+.|+.. .++..+... .-.|...-|. +.+.-++..| ...++.|||+.+
T Consensus 117 ~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~ldi~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~N 194 (249)
T TIGR01485 117 QRPHKVSFFLDPEAAPEVIKQLTEMLKETGLDV--KLIYSSGKDLDILPQGSGKGQALQYLLQKLAMEPSQTLVCGDSGN 194 (249)
T ss_pred cCCeeEEEEechhhhhHHHHHHHHHHHhcCCCE--EEEEECCceEEEEeCCCChHHHHHHHHHHcCCCccCEEEEECChh
Confidence 345777777654321 1333455666666642 233332110 0001112232 2332223334 346899999999
Q ss_pred ccccccc-cccEEEeCCC
Q 024820 241 DLLGFAK-AERSFKLPNP 257 (262)
Q Consensus 241 Dl~g~~~-g~r~fklPNp 257 (262)
|+..... +...+...|.
T Consensus 195 D~~ml~~~~~~~va~~na 212 (249)
T TIGR01485 195 DIELFEIGSVRGVIVSNA 212 (249)
T ss_pred HHHHHHccCCcEEEECCC
Confidence 9998875 6678888775
No 232
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=59.45 E-value=35 Score=31.09 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=35.9
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~ 197 (262)
+..--||+..+.+.|++.|.++.++|.+. ......+.++.+|...
T Consensus 58 ETDGP~GA~aLa~aL~~lG~~~~ivtd~~--~~~~~~~~~~~~~~~~ 102 (291)
T PF14336_consen 58 ETDGPPGAAALARALQALGKEVVIVTDER--CAPVVKAAVRAAGLQG 102 (291)
T ss_pred CCCChHHHHHHHHHHHHcCCeEEEEECHH--HHHHHHHHHHHHhhCc
Confidence 34556899999999999999999999765 4566667777777754
No 233
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=59.35 E-value=32 Score=24.73 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCc
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~ 198 (262)
.+--..++.+.++++|.++.+..-++ ...+.|+..|+...
T Consensus 55 g~~~L~~l~~~~~~~g~~v~i~~~~~-----~~~~~l~~~gl~~~ 94 (99)
T cd07043 55 GLGVLLGAYKRARAAGGRLVLVNVSP-----AVRRVLELTGLDRL 94 (99)
T ss_pred hHHHHHHHHHHHHHcCCeEEEEcCCH-----HHHHHHHHhCccee
Confidence 34456778889999999977776654 55677888888653
No 234
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=58.71 E-value=37 Score=25.22 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcc
Q 024820 157 ASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWK 199 (262)
Q Consensus 157 galell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~ 199 (262)
...++++.++++|.++.++.-++ ...+.|+..|+..+.
T Consensus 59 ~L~~~~~~~~~~g~~l~l~~~~~-----~v~~~l~~~gl~~~~ 96 (106)
T TIGR02886 59 VILGRYKKIKNEGGEVIVCNVSP-----AVKRLFELSGLFKII 96 (106)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHhCCceEE
Confidence 45577888999999999877655 567788899987544
No 235
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=58.17 E-value=7.9 Score=29.45 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCc
Q 024820 156 PASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDW 198 (262)
Q Consensus 156 pgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~ 198 (262)
....++.+.++++|.+++++.-++ ...+.|.+.|+...
T Consensus 67 ~~L~~~~~~~~~~g~~~~l~~~~~-----~v~~~l~~~~~~~~ 104 (117)
T PF01740_consen 67 QALVDIIKELRRRGVQLVLVGLNP-----DVRRILERSGLIDF 104 (117)
T ss_dssp HHHHHHHHHHHHTTCEEEEESHHH-----HHHHHHHHTTGHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHcCCChh
Confidence 356788899999999999988765 55566888898643
No 236
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=57.83 E-value=74 Score=29.35 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=30.2
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCC
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGY 195 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~ 195 (262)
+....|...++++.++++|+.++++||-. .....+.| ..+.
T Consensus 140 EPlL~p~l~eli~~~k~~Gi~~~L~TNG~---~~e~l~~L-~~~~ 180 (322)
T PRK13762 140 EPTLYPYLPELIEEFHKRGFTTFLVTNGT---RPDVLEKL-EEEP 180 (322)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEECCCC---CHHHHHHH-HhcC
Confidence 34446788999999999999999999986 23445555 3354
No 237
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=57.66 E-value=19 Score=32.11 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCC
Q 024820 138 FNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (262)
Q Consensus 138 ~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~ 196 (262)
++.....+-+.......-+|+.+|++.|+++++++.+.|+-= -+..++.|++.|..
T Consensus 75 l~k~~i~~~V~~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGl---gdvI~~vL~q~~~~ 130 (246)
T PF05822_consen 75 LTKSEIEEAVKESDIMLRDGVEEFFDKLEEHNIPLLIFSAGL---GDVIEEVLRQAGVF 130 (246)
T ss_dssp -BGGGHHHHHHCS---B-BTHHHHHHHHHCTT--EEEEEEEE---HHHHHHHHHHTT--
T ss_pred cCHHHHHHHHHhcchhhhcCHHHHHHHHHhcCCCEEEEeCCc---HHHHHHHHHHcCCC
Confidence 445667777888888999999999999999999999999866 88899999998754
No 238
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=56.08 E-value=24 Score=25.80 Aligned_cols=32 Identities=38% Similarity=0.457 Sum_probs=24.8
Q ss_pred HHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC
Q 024820 158 SLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 158 alell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~ 197 (262)
+.++.+.|.+.|++|+ .|. .|.+.|++.|++.
T Consensus 2 ~~~~~~~l~~lG~~i~-AT~-------gTa~~L~~~Gi~~ 33 (90)
T smart00851 2 LVELAKRLAELGFELV-ATG-------GTAKFLREAGLPV 33 (90)
T ss_pred HHHHHHHHHHCCCEEE-Ecc-------HHHHHHHHCCCcc
Confidence 4678889999999995 554 2567899999864
No 239
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=55.63 E-value=26 Score=31.72 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEccC
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTGR 178 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTgR 178 (262)
..+|...+++++|+++|++++++..-
T Consensus 71 ~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 71 KLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred hcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 35688899999999999999987753
No 240
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=54.12 E-value=18 Score=27.81 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.4
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccCccc
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGRNEF 181 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR~e~ 181 (262)
--+.+.+.++.++++|.+++.+|+.+..
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4568899999999999999999998744
No 241
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=54.03 E-value=18 Score=27.75 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCcc
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNE 180 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e 180 (262)
-+.+++.++.++++|.+++.+|+.+.
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 45789999999999999999999874
No 242
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=53.60 E-value=42 Score=30.77 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=30.0
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCC
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGY 195 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~ 195 (262)
...+|...+++++|+++|+++++...-.-......-+.+.+.|+
T Consensus 66 ~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~ 109 (317)
T cd06598 66 RKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGA 109 (317)
T ss_pred cccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCC
Confidence 34567778999999999999998775332222233455666776
No 243
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=52.49 E-value=12 Score=34.84 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=31.6
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~ 197 (262)
+-..--..++++|.++|++|. +|.|. ...|.+-|+..|++.
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~-it~R~---~~~~~~LL~~yg~~y 51 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVL-ITARD---KDETEELLDLYGIDY 51 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEE-EEEec---cchHHHHHHHcCCCe
Confidence 334445678889999999876 55566 678999999999974
No 244
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=52.34 E-value=79 Score=23.61 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHCCCeEEEEccCccc
Q 024820 157 ASLTFYKELKQLGFKIFLLTGRNEF 181 (262)
Q Consensus 157 galell~~Lk~~GikI~~vTgR~e~ 181 (262)
-..++++.|++.|+++.++...++.
T Consensus 9 ~~~~i~~~L~~~~~~vvvid~d~~~ 33 (116)
T PF02254_consen 9 IGREIAEQLKEGGIDVVVIDRDPER 33 (116)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCcHH
Confidence 3456777777777778777777643
No 245
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=52.24 E-value=47 Score=24.54 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=38.9
Q ss_pred CCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHH
Q 024820 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEK 188 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~ 188 (262)
+.+.+++|+.+.-.-. ...+.-..++.+.++++|.++.+..-++ ...+
T Consensus 42 ~~~~vvidls~v~~iD---------------------------ssgl~~L~~~~~~~~~~~~~~~l~~~~~-----~~~~ 89 (108)
T TIGR00377 42 GPRPIVLDLEDLEFMD---------------------------SSGLGVLLGRYKQVRRVGGQLVLVSVSP-----RVAR 89 (108)
T ss_pred CCCeEEEECCCCeEEc---------------------------cccHHHHHHHHHHHHhcCCEEEEEeCCH-----HHHH
Confidence 5668999998843221 2233345677888899999877666544 5567
Q ss_pred HHHhcCCCC
Q 024820 189 NLLFAGYSD 197 (262)
Q Consensus 189 nL~~~G~~~ 197 (262)
.|+..|+..
T Consensus 90 ~l~~~~l~~ 98 (108)
T TIGR00377 90 LLDITGLLR 98 (108)
T ss_pred HHHHhChhh
Confidence 888888865
No 246
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=51.77 E-value=21 Score=27.33 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHCCCeEEEEccCcc
Q 024820 156 PASLTFYKELKQLGFKIFLLTGRNE 180 (262)
Q Consensus 156 pgalell~~Lk~~GikI~~vTgR~e 180 (262)
+.+.++++.++++|.+++.+|++.+
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSAN 98 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 5788999999999999999999874
No 247
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=51.66 E-value=1.3e+02 Score=28.84 Aligned_cols=47 Identities=26% Similarity=0.356 Sum_probs=32.5
Q ss_pred CCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCc
Q 024820 109 GKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRN 179 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~ 179 (262)
+.+-|-||=|+||.+-.. .+ ....|.+|-++ .|.++|++|.+||+-.
T Consensus 146 ~L~LvTFDgDvTLY~DG~----------sl----------~~d~pvi~~ii----~LL~~gv~VgIVTAAG 192 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDGA----------SL----------EPDNPVIPRII----KLLRRGVKVGIVTAAG 192 (408)
T ss_pred CceEEEEcCCcccccCCC----------CC----------CCCchHHHHHH----HHHhcCCeEEEEeCCC
Confidence 677899999999987421 11 11344444444 4568999999999865
No 248
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=51.63 E-value=30 Score=26.00 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCC
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~ 196 (262)
++...+++++++++|+.++.||.-+ .+...+++++.+++
T Consensus 45 l~~l~~~~~~~~~~~~~vi~is~d~---~~~~~~~~~~~~~~ 83 (124)
T PF00578_consen 45 LPELNELYKKYKDKGVQVIGISTDD---PEEIKQFLEEYGLP 83 (124)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEESSS---HHHHHHHHHHHTCS
T ss_pred hhHHHHHhhhhccceEEeeeccccc---ccchhhhhhhhccc
Confidence 4677888889999999999999977 56788888888875
No 249
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=51.40 E-value=1.1e+02 Score=29.62 Aligned_cols=19 Identities=26% Similarity=0.141 Sum_probs=15.5
Q ss_pred CCceEEEecCCCccCChhH
Q 024820 109 GKDAWVFDIDETLLSNLPY 127 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y 127 (262)
.+..|++|||.|+.++...
T Consensus 138 ~~~~i~LDiD~T~~~~~G~ 156 (448)
T PF13701_consen 138 PPKEIVLDIDSTVDDVHGE 156 (448)
T ss_pred ccceEEEecccccccchhh
Confidence 4689999999999887543
No 250
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=51.18 E-value=23 Score=27.07 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCccc
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNEF 181 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e~ 181 (262)
-....+.++.++++|.+++.+|+..+.
T Consensus 66 ~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 66 TRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp THHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred chhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 357789999999999999999998743
No 251
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=50.66 E-value=34 Score=31.47 Aligned_cols=42 Identities=19% Similarity=0.170 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHCCC--eEEEEccCccccHHHHHHHHHhcCCCC
Q 024820 156 PASLTFYKELKQLGF--KIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 156 pgalell~~Lk~~Gi--kI~~vTgR~e~~r~~T~~nL~~~G~~~ 197 (262)
..+++++..++++|. +|++.=+||..+-..+.+.|+++|++.
T Consensus 130 ~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~ 173 (301)
T COG1184 130 KTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPV 173 (301)
T ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCce
Confidence 578899999999985 999999999999999999999999863
No 252
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=48.50 E-value=33 Score=29.67 Aligned_cols=45 Identities=20% Similarity=0.116 Sum_probs=38.0
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~ 197 (262)
.-++-++-++-+.+++.+++++++|=..+. .+.+.+.|-++|+.+
T Consensus 129 ~v~V~~~d~le~~v~~~dv~iaiLtVPa~~-AQ~vad~Lv~aGVkG 173 (211)
T COG2344 129 DVPVYDLDDLEKFVKKNDVEIAILTVPAEH-AQEVADRLVKAGVKG 173 (211)
T ss_pred CeeeechHHHHHHHHhcCccEEEEEccHHH-HHHHHHHHHHcCCce
Confidence 366778888888999999999999987654 667888999999976
No 253
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=47.97 E-value=94 Score=29.40 Aligned_cols=88 Identities=11% Similarity=0.080 Sum_probs=53.7
Q ss_pred CCeEEEEccCcccc-----HHHHHHHHHhcCCCC--cceeEeeCCCCCCCCchhhhHHHHHhhhhcCcc---EEEEEC-C
Q 024820 169 GFKIFLLTGRNEFQ-----RNTTEKNLLFAGYSD--WKKLFLRGPSDQGKPATVYKSEKRLELVNEGYR---IHGSSG-D 237 (262)
Q Consensus 169 GikI~~vTgR~e~~-----r~~T~~nL~~~G~~~--~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~---iv~~IG-D 237 (262)
+-+++++|.+.-.. .+...+.|++.|+.. +...+.-++++..|+....-......+.+.|.. .++.+| =
T Consensus 30 ~~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG 109 (369)
T cd08198 30 RPKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGG 109 (369)
T ss_pred CCeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECCh
Confidence 47899999986332 256667888888532 234455556677776433333444455555664 555566 4
Q ss_pred Ccccccccc-----ccccEEEeCC
Q 024820 238 QWSDLLGFA-----KAERSFKLPN 256 (262)
Q Consensus 238 q~sDl~g~~-----~g~r~fklPN 256 (262)
...|+.+.- .|.+.+.+|-
T Consensus 110 ~v~D~ag~vA~~~~rGip~I~IPT 133 (369)
T cd08198 110 AVLDAVGYAAATAHRGVRLIRIPT 133 (369)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECC
Confidence 666877654 3777888874
No 254
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=47.64 E-value=24 Score=29.10 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=24.9
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEccCccc
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTGRNEF 181 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTgR~e~ 181 (262)
.--+.+.++++.++++|.+++.+|+.+..
T Consensus 83 G~t~~~i~~~~~ak~~g~~ii~IT~~~~s 111 (179)
T TIGR03127 83 GETESLVTVAKKAKEIGATVAAITTNPES 111 (179)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 34578899999999999999999998744
No 255
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=47.47 E-value=94 Score=27.34 Aligned_cols=90 Identities=22% Similarity=0.145 Sum_probs=51.9
Q ss_pred HHhcCCCCChHHHHHHHHHHHCCCeE---EEEccCc----cccHHHHHHHHHhcCCC-CcceeEeeCCCCCCCCchhhhH
Q 024820 147 VDLAKAPALPASLTFYKELKQLGFKI---FLLTGRN----EFQRNTTEKNLLFAGYS-DWKKLFLRGPSDQGKPATVYKS 218 (262)
Q Consensus 147 v~~~~a~~ipgalell~~Lk~~GikI---~~vTgR~----e~~r~~T~~nL~~~G~~-~~~~Lilr~~~~~~Kp~~~~Ks 218 (262)
++.+.-.-.|..+++++.++++|-++ .++|.-. ..+-.+..+.+++.|++ .|.++++.+-+..++....|-+
T Consensus 5 I~~g~~~~n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~ 84 (223)
T PF06415_consen 5 IEDGSFFKNPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLE 84 (223)
T ss_dssp HHTTGGGTSHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHH
T ss_pred HhCCCcccCHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHH
Confidence 34444455667777888887765443 4556533 22345667777788876 3667777776666666666766
Q ss_pred HHHHhhhhcCc-cEEEEEC
Q 024820 219 EKRLELVNEGY-RIHGSSG 236 (262)
Q Consensus 219 ~~r~~L~~~g~-~iv~~IG 236 (262)
.....+.+.|. +|.-.+|
T Consensus 85 ~l~~~l~~~~~g~IAsv~G 103 (223)
T PF06415_consen 85 ELEEKLAEIGIGRIASVSG 103 (223)
T ss_dssp HHHHHHHHHTCTEEEEEEE
T ss_pred HHHHHHHhhCCceEEEEec
Confidence 77666666555 4433333
No 256
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=47.21 E-value=31 Score=31.67 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=34.5
Q ss_pred CCCCChHHHHHHHHHHHCC-CeEEEEccCccccHHHHHHHHHhcCCCCcceeEee
Q 024820 151 KAPALPASLTFYKELKQLG-FKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLR 204 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~G-ikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr 204 (262)
+....|..-++++.+++.| +++++|||-+ . .+.++++..+ +.+++.
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgs---l---pdv~~~L~~~--dql~~s 136 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGS---L---PDVLEELKLP--DQLYVS 136 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCC---h---HHHHHHhccC--CEEEEE
Confidence 5678899999999999999 7999999998 4 3444444443 345544
No 257
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=47.00 E-value=27 Score=26.97 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCccc
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNEF 181 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e~ 181 (262)
-+.+.+.++.++++|.+++.+|+..+.
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (120)
T cd05710 60 TKETVAAAKFAKEKGATVIGLTDDEDS 86 (120)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 467899999999999999999998743
No 258
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=46.64 E-value=96 Score=29.83 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=34.2
Q ss_pred HHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEee
Q 024820 161 FYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLR 204 (262)
Q Consensus 161 ll~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr 204 (262)
++..+++.|-+.+++||..-..-+.+..++-..+++.++.+++.
T Consensus 206 ~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~ 249 (424)
T KOG2469|consen 206 LLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVET 249 (424)
T ss_pred chHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEE
Confidence 78889999999999999997766666666666677766665543
No 259
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.48 E-value=16 Score=33.92 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=37.6
Q ss_pred HHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC
Q 024820 146 WVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 146 wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~ 197 (262)
|++-+.++-.+-...++.+|+++|++| ++|.|. +....+-|+..||+.
T Consensus 4 wiDI~n~~hvhfFk~lI~elekkG~ev-~iT~rd---~~~v~~LLd~ygf~~ 51 (346)
T COG1817 4 WIDIGNPPHVHFFKNLIWELEKKGHEV-LITCRD---FGVVTELLDLYGFPY 51 (346)
T ss_pred EEEcCCcchhhHHHHHHHHHHhCCeEE-EEEEee---cCcHHHHHHHhCCCe
Confidence 444455666777788999999999965 567777 778888999999974
No 260
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=45.91 E-value=48 Score=25.37 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhh-cCccEEE
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVN-EGYRIHG 233 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~-~g~~iv~ 233 (262)
.+.+.++.++|.+.|++|+ .|+ .|.+.|++.|++. ..+....+ .+.| .....+.+ ..+..++
T Consensus 11 K~~~~~~a~~l~~~G~~i~-AT~-------gTa~~L~~~Gi~~--~~v~~~~~-~g~~------~i~~~i~~~g~idlVI 73 (112)
T cd00532 11 KAMLVDLAPKLSSDGFPLF-ATG-------GTSRVLADAGIPV--RAVSKRHE-DGEP------TVDAAIAEKGKFDVVI 73 (112)
T ss_pred HHHHHHHHHHHHHCCCEEE-ECc-------HHHHHHHHcCCce--EEEEecCC-CCCc------HHHHHHhCCCCEEEEE
Confidence 4678889999999999995 554 4678899999874 33433322 1112 12223334 4556677
Q ss_pred EECC
Q 024820 234 SSGD 237 (262)
Q Consensus 234 ~IGD 237 (262)
++-|
T Consensus 74 n~~~ 77 (112)
T cd00532 74 NLRD 77 (112)
T ss_pred EcCC
Confidence 7655
No 261
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.88 E-value=71 Score=29.04 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=21.0
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccC
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGR 178 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR 178 (262)
.+|...+++++|+++|+++++...=
T Consensus 68 ~FPdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 68 KFPDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred hCCCHHHHHHHHHHCCCeEEEEECC
Confidence 5678899999999999999886543
No 262
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=45.83 E-value=23 Score=32.00 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=18.1
Q ss_pred EEEEECCCcc-cccccc-ccccEEEe
Q 024820 231 IHGSSGDQWS-DLLGFA-KAERSFKL 254 (262)
Q Consensus 231 iv~~IGDq~s-Dl~g~~-~g~r~fkl 254 (262)
.+++|||+.. |+.++. +|+.++.+
T Consensus 209 ~~~mVGD~~~TDI~~a~~~G~~t~LV 234 (269)
T COG0647 209 EVLMVGDRLDTDILGAKAAGLDTLLV 234 (269)
T ss_pred cEEEEcCCchhhHHHHHHcCCCEEEE
Confidence 5788999875 999987 67666543
No 263
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=44.85 E-value=40 Score=28.89 Aligned_cols=35 Identities=40% Similarity=0.419 Sum_probs=29.0
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~ 197 (262)
.+++.++.+.|.+.|++|+ .|+ .|.++|+.+|++.
T Consensus 10 K~~l~~lAk~L~~lGf~I~-AT~-------GTAk~L~e~GI~v 44 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL-STG-------GTAKFLKEAGIPV 44 (187)
T ss_pred cccHHHHHHHHHHCCCEEE-Ecc-------HHHHHHHHcCCeE
Confidence 5789999999999999996 554 3678999999964
No 264
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=44.65 E-value=35 Score=27.10 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=38.1
Q ss_pred CceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCc
Q 024820 110 KDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRN 179 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~ 179 (262)
.-.+.|=+||+-+-.- .+.++.+.++.|...++++++++.|+++++.+-.-
T Consensus 35 dV~iF~t~dG~~l~~K-------------------~~~ekik~~~~~~l~~~~~~a~e~GVk~yvCe~s~ 85 (120)
T COG2044 35 DVTIFFTMDGVTLVKK-------------------KVAEKIKHPNFPPLEELIKQAIEAGVKIYVCEQSL 85 (120)
T ss_pred ceEEEEEeccceeeee-------------------cchhhhcCCCCCCHHHHHHHHHHcCCEEEEEcchh
Confidence 3357789999766541 11223456888999999999999999999987654
No 265
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=44.54 E-value=50 Score=27.81 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhcccccCCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHC
Q 024820 89 EIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQL 168 (262)
Q Consensus 89 ~~v~~~a~~y~~~~~~~~~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~ 168 (262)
.....||..+.+.++.. +...+.+++||..+ .+.. + -+.+. ...-+.++++.+++.
T Consensus 67 ~~~~~Qa~~f~~~~~~~-~~~~~~i~lDiE~~--~~~~-------~---~~~~~-----------~~~~~~~f~~~~~~~ 122 (196)
T cd06416 67 GSAAGQVQTFLQYLKAN-GIKYGTVWIDIEQN--PCQW-------S---SDVAS-----------NCQFLQELVSAAKAL 122 (196)
T ss_pred CCHHHHHHHHHHHHHhC-CCceeEEEEEEecC--CCCC-------c---CCHHH-----------HHHHHHHHHHHHHHh
Confidence 34568888888776553 33455677999975 1100 0 00111 112456888889888
Q ss_pred CCeEEEEccCc
Q 024820 169 GFKIFLLTGRN 179 (262)
Q Consensus 169 GikI~~vTgR~ 179 (262)
|.++.+-|++.
T Consensus 123 G~~~~iYt~~~ 133 (196)
T cd06416 123 GLKVGIYSSQY 133 (196)
T ss_pred CCeEEEEcCcc
Confidence 99999999987
No 266
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=44.51 E-value=68 Score=23.86 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC
Q 024820 157 ASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 157 galell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~ 197 (262)
...++++.++++|.++.++--++ ...+.|+..|+..
T Consensus 61 ~l~~~~~~~~~~g~~l~l~g~~~-----~v~~~l~~~gl~~ 96 (109)
T cd07041 61 HLLRLARALRLLGARTILTGIRP-----EVAQTLVELGIDL 96 (109)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCH-----HHHHHHHHhCCCh
Confidence 45678888999999999887665 4567888889864
No 267
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=43.85 E-value=6.5 Score=24.06 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=9.3
Q ss_pred ecCcccccccCcc
Q 024820 58 TNDAGEWDSVPSR 70 (262)
Q Consensus 58 ~nn~~~~~~vP~~ 70 (262)
.||+++++|+|+.
T Consensus 9 gnni~~fkt~p~s 21 (38)
T PF09198_consen 9 GNNIQNFKTTPSS 21 (38)
T ss_dssp SS--SSSSSHHHH
T ss_pred CCceeceeecCcc
Confidence 4899999999974
No 268
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=43.70 E-value=31 Score=28.48 Aligned_cols=29 Identities=31% Similarity=0.362 Sum_probs=25.2
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEccCccc
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTGRNEF 181 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTgR~e~ 181 (262)
..-+.+.+.++.++++|.+++.+|+.+..
T Consensus 112 G~t~~~i~~~~~ak~~Ga~vI~IT~~~~s 140 (177)
T cd05006 112 GNSPNVLKALEAAKERGMKTIALTGRDGG 140 (177)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 44589999999999999999999998743
No 269
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=43.36 E-value=1.9e+02 Score=23.83 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCC
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGY 195 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~ 195 (262)
.|...++++++++.|+.+.+.|+-.. ....+.+.+.|+
T Consensus 76 ~~~l~~li~~~~~~g~~v~i~TNg~~---~~~l~~l~~~g~ 113 (191)
T TIGR02495 76 QAGLPDFLRKVRELGFEVKLDTNGSN---PRVLEELLEEGL 113 (191)
T ss_pred cHhHHHHHHHHHHCCCeEEEEeCCCC---HHHHHHHHhcCC
Confidence 35678899999999999999999862 233444556674
No 270
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=43.33 E-value=33 Score=26.34 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.5
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccCc
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGRN 179 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR~ 179 (262)
--+.+++.++.++++|.+++.+|+..
T Consensus 55 ~t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 55 NTEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34688999999999999999999865
No 271
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=43.19 E-value=62 Score=25.29 Aligned_cols=40 Identities=10% Similarity=-0.025 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCC
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~ 196 (262)
.+|...+++++++++|+.++.||.-+ .+...+++++.+++
T Consensus 47 ~~~~l~~~~~~~~~~~v~vi~vs~d~---~~~~~~~~~~~~~~ 86 (149)
T cd03018 47 ELCALRDSLELFEAAGAEVLGISVDS---PFSLRAWAEENGLT 86 (149)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCCC---HHHHHHHHHhcCCC
Confidence 46777888889999999999998765 55667788888875
No 272
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=42.81 E-value=33 Score=27.80 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccCccc
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGRNEF 181 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR~e~ 181 (262)
-.+.+.+.++.++++|.+++.+|+.+..
T Consensus 91 ~t~~~~~~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 91 NSKNVLKAIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 3578899999999999999999998743
No 273
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=42.51 E-value=56 Score=29.88 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=48.1
Q ss_pred HHHHHHHHHHC-CCe-EEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCC-CCCchhhhHHHHHhhhhcCccEEEE
Q 024820 158 SLTFYKELKQL-GFK-IFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQ-GKPATVYKSEKRLELVNEGYRIHGS 234 (262)
Q Consensus 158 alell~~Lk~~-Gik-I~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~-~Kp~~~~Ks~~r~~L~~~g~~iv~~ 234 (262)
..-+++.|++. ++. .+++||+. .....+.++.+|++.-..+.+.+++.. .+.....-....+.+.+..+.++..
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~ 92 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQH---REMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDIVLV 92 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCC---HHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 34567777765 443 57899998 455566666678763223333321110 0100111133444556667889999
Q ss_pred ECCCccccccc
Q 024820 235 SGDQWSDLLGF 245 (262)
Q Consensus 235 IGDq~sDl~g~ 245 (262)
.||...-+.|+
T Consensus 93 ~gd~~~~la~a 103 (365)
T TIGR00236 93 QGDTTTTLAGA 103 (365)
T ss_pred eCCchHHHHHH
Confidence 99987766554
No 274
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=42.12 E-value=29 Score=28.26 Aligned_cols=53 Identities=15% Similarity=0.124 Sum_probs=35.7
Q ss_pred eEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHH
Q 024820 112 AWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLL 191 (262)
Q Consensus 112 aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~ 191 (262)
.-++|+||.+++-... ..+ ..-++++.+.+.|..+++.|.-... ..|.+-|.
T Consensus 45 iAildL~G~~l~l~S~--------R~~------------------~~~evi~~I~~~G~PviVAtDV~p~--P~~V~Kia 96 (138)
T PF04312_consen 45 IAILDLDGELLDLKSS--------RNM------------------SRSEVIEWISEYGKPVIVATDVSPP--PETVKKIA 96 (138)
T ss_pred EEEEecCCcEEEEEee--------cCC------------------CHHHHHHHHHHcCCEEEEEecCCCC--cHHHHHHH
Confidence 3579999999985210 111 3456777788999999999997743 34555554
Q ss_pred h
Q 024820 192 F 192 (262)
Q Consensus 192 ~ 192 (262)
+
T Consensus 97 ~ 97 (138)
T PF04312_consen 97 R 97 (138)
T ss_pred H
Confidence 4
No 275
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=41.88 E-value=61 Score=34.12 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=26.4
Q ss_pred CCCCChHHHHHHHHHHHCCCeEEEEccCcc
Q 024820 151 KAPALPASLTFYKELKQLGFKIFLLTGRNE 180 (262)
Q Consensus 151 ~a~~ipgalell~~Lk~~GikI~~vTgR~e 180 (262)
-.||-+.+.+...++++.|++++.+||+..
T Consensus 588 idPPR~~vP~Av~~CrsAGIkvimVTgdhp 617 (1019)
T KOG0203|consen 588 IDPPRAAVPDAVGKCRSAGIKVIMVTGDHP 617 (1019)
T ss_pred cCCCcccCchhhhhhhhhCceEEEEecCcc
Confidence 368888888888999999999999999874
No 276
>PRK13937 phosphoheptose isomerase; Provisional
Probab=41.69 E-value=34 Score=28.82 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=24.5
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccCccc
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGRNEF 181 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR~e~ 181 (262)
--+.+.+.++.++++|.+++.+|+.+..
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~~s 145 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRDGG 145 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4588999999999999999999998743
No 277
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=41.56 E-value=56 Score=30.11 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=21.5
Q ss_pred EEEEECCCccccccccccccEEEeCCCC
Q 024820 231 IHGSSGDQWSDLLGFAKAERSFKLPNPM 258 (262)
Q Consensus 231 iv~~IGDq~sDl~g~~~g~r~fklPNp~ 258 (262)
.++.+||+++|+.==.+....+.+|+|-
T Consensus 228 ~tiaLGDspND~~mLe~~D~~vvi~~~~ 255 (302)
T PRK12702 228 KALGIGCSPPDLAFLRWSEQKVVLPSPI 255 (302)
T ss_pred eEEEecCChhhHHHHHhCCeeEEecCCC
Confidence 6788999999997655556667777763
No 278
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=41.11 E-value=35 Score=28.19 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=25.0
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEccCccc
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTGRNEF 181 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTgR~e~ 181 (262)
.-.+.+.++++.++++|.+++.+|+....
T Consensus 86 G~t~~~i~~~~~ak~~g~~iI~IT~~~~s 114 (179)
T cd05005 86 GETSSVVNAAEKAKKAGAKVVLITSNPDS 114 (179)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 44578899999999999999999998744
No 279
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=40.91 E-value=73 Score=24.51 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCC
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~ 196 (262)
++...++.+.++++|+.++.||..+ .+...+++++.|++
T Consensus 43 ~~~l~~~~~~~~~~~~~vv~is~d~---~~~~~~~~~~~~~~ 81 (140)
T cd03017 43 ACDFRDLYEEFKALGAVVIGVSPDS---VESHAKFAEKYGLP 81 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHhCCC
Confidence 5677788888889999999999754 56667888888875
No 280
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=40.85 E-value=2.3e+02 Score=26.52 Aligned_cols=90 Identities=19% Similarity=0.139 Sum_probs=52.0
Q ss_pred HHHHCC-CeEEEEccCccc--cHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCcc---EEEEECC
Q 024820 164 ELKQLG-FKIFLLTGRNEF--QRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYR---IHGSSGD 237 (262)
Q Consensus 164 ~Lk~~G-ikI~~vTgR~e~--~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~---iv~~IGD 237 (262)
.+++.| -+++++|++.-. ..+...+.|++.|+.. ...++. ..+..|+. .--......+.+.|.. .++.||-
T Consensus 17 ~l~~~g~~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~-~~~~~~-~~e~~k~~-~~v~~~~~~~~~~~~dr~~~IIAvGG 93 (355)
T cd08197 17 YLPELNADKYLLVTDSNVEDLYGHRLLEYLREAGAPV-ELLSVP-SGEEHKTL-STLSDLVERALALGATRRSVIVALGG 93 (355)
T ss_pred HHHhcCCCeEEEEECccHHHHHHHHHHHHHHhcCCce-EEEEeC-CCCCCCCH-HHHHHHHHHHHHcCCCCCcEEEEECC
Confidence 345555 678999987632 2455678888888863 223333 33333321 2222333445455675 5666775
Q ss_pred -Ccccccccc-----ccccEEEeCC
Q 024820 238 -QWSDLLGFA-----KAERSFKLPN 256 (262)
Q Consensus 238 -q~sDl~g~~-----~g~r~fklPN 256 (262)
+..|+.+.- .|.+.+.+|-
T Consensus 94 Gsv~D~ak~~A~~~~rgip~I~IPT 118 (355)
T cd08197 94 GVVGNIAGLLAALLFRGIRLVHIPT 118 (355)
T ss_pred cHHHHHHHHHHHHhccCCCEEEecC
Confidence 667887653 3677777774
No 281
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=40.47 E-value=53 Score=24.27 Aligned_cols=74 Identities=20% Similarity=0.166 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEEC
Q 024820 157 ASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSG 236 (262)
Q Consensus 157 galell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IG 236 (262)
+++++.+.|.+.|++|+ .|+ .|.+.|+++|++. ..+.-...... .+ .........+.......+++.=
T Consensus 1 e~~~~a~~l~~lG~~i~-AT~-------gTa~~L~~~Gi~~-~~v~~~~~~~~-~~--~g~~~i~~~i~~~~IdlVIn~~ 68 (95)
T PF02142_consen 1 EIVPLAKRLAELGFEIY-ATE-------GTAKFLKEHGIEV-TEVVNKIGEGE-SP--DGRVQIMDLIKNGKIDLVINTP 68 (95)
T ss_dssp THHHHHHHHHHTTSEEE-EEH-------HHHHHHHHTT--E-EECCEEHSTG--GG--THCHHHHHHHHTTSEEEEEEE-
T ss_pred CHHHHHHHHHHCCCEEE-ECh-------HHHHHHHHcCCCc-eeeeeecccCc-cC--CchhHHHHHHHcCCeEEEEEeC
Confidence 47889999999999876 333 4678999999983 22221111100 00 0111344445454555667666
Q ss_pred CCcccc
Q 024820 237 DQWSDL 242 (262)
Q Consensus 237 Dq~sDl 242 (262)
+..++-
T Consensus 69 ~~~~~~ 74 (95)
T PF02142_consen 69 YPFSDQ 74 (95)
T ss_dssp -THHHH
T ss_pred CCCccc
Confidence 555443
No 282
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=39.66 E-value=51 Score=25.31 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccC---ccccHHHHHHHHHhcCCCC
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGR---NEFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR---~e~~r~~T~~nL~~~G~~~ 197 (262)
.+|...+++++++++|+.++.++.. .+...+...+++++.|++.
T Consensus 41 ~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (126)
T cd03012 41 TLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITY 87 (126)
T ss_pred HHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCC
Confidence 3678888888888899999999752 1234677788899999863
No 283
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=39.62 E-value=2.3e+02 Score=26.27 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~ 197 (262)
.|...+++++++++|+.+.+.||-.-- .+...+.|.++|+..
T Consensus 76 ~~~~~~il~~~~~~g~~~~i~TNG~ll-~~~~~~~L~~~g~~~ 117 (378)
T PRK05301 76 RKDLEELVAHARELGLYTNLITSGVGL-TEARLAALKDAGLDH 117 (378)
T ss_pred chhHHHHHHHHHHcCCcEEEECCCccC-CHHHHHHHHHcCCCE
Confidence 467789999999999999999986532 234567788888753
No 284
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=39.58 E-value=39 Score=23.75 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=20.0
Q ss_pred ChHHHHHHHHHHHCCCeEEEEc
Q 024820 155 LPASLTFYKELKQLGFKIFLLT 176 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vT 176 (262)
-+.+.++++.++++|.+++.+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4678999999999999999999
No 285
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=39.02 E-value=2.2e+02 Score=23.45 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=29.0
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhc
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFA 193 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~ 193 (262)
...=+.++++.+.+.|.+|+++-++++. -+...++|++.
T Consensus 33 g~dl~~~l~~~~~~~~~~ifllG~~~~~-~~~~~~~l~~~ 71 (172)
T PF03808_consen 33 GSDLFPDLLRRAEQRGKRIFLLGGSEEV-LEKAAANLRRR 71 (172)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCHHH-HHHHHHHHHHH
Confidence 3344568888888999999999999755 44556677665
No 286
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=38.89 E-value=57 Score=25.94 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=19.2
Q ss_pred ChHHH-HHHHHHHHCCCeEEEEccCc
Q 024820 155 LPASL-TFYKELKQLGFKIFLLTGRN 179 (262)
Q Consensus 155 ipgal-ell~~Lk~~GikI~~vTgR~ 179 (262)
++|++ ..++-|.++|+.||.+|.-+
T Consensus 76 ltGilasV~~pLsd~gigIFavStyd 101 (128)
T COG3603 76 LTGILASVSQPLSDNGIGIFAVSTYD 101 (128)
T ss_pred cchhhhhhhhhHhhCCccEEEEEecc
Confidence 34544 55778899999999999865
No 287
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=38.71 E-value=35 Score=27.11 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHCCCeEEEEcc
Q 024820 155 LPASLTFYKELKQLGFKIFLLTG 177 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTg 177 (262)
-|.+++.+++.+++|.+++-+||
T Consensus 116 s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 116 SPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEeC
Confidence 48899999999999999999986
No 288
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=38.52 E-value=1.3e+02 Score=29.15 Aligned_cols=73 Identities=21% Similarity=0.299 Sum_probs=48.3
Q ss_pred HHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCC-CCCCchhhhHHHHHhhhhcCccEEEEEC
Q 024820 158 SLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSD-QGKPATVYKSEKRLELVNEGYRIHGSSG 236 (262)
Q Consensus 158 alell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~-~~Kp~~~~Ks~~r~~L~~~g~~iv~~IG 236 (262)
--.|++.|+++|+++-+.+..++. -.|.+.|-..|++||+-+... .-.+. .......+....|-+|.+..+
T Consensus 14 yS~Ff~~L~~rg~~l~~~~~~d~~------l~L~~~ge~~YD~LIif~~~~k~~g~~--ls~~~ll~Fvd~GgNilv~~s 85 (423)
T PF03345_consen 14 YSTFFNSLKERGYELTFKSADDES------LSLFKYGERLYDHLIIFPPSVKEFGGS--LSPKTLLDFVDNGGNILVAGS 85 (423)
T ss_pred HHHHHHHHHhCCCEEEEecCCCCC------cchhhCChhhcceEEEeCCcccccCCC--CCHHHHHHHHhCCCcEEEEeC
Confidence 467899999999999999998733 468888998899998876432 11111 223334455566777655443
Q ss_pred CC
Q 024820 237 DQ 238 (262)
Q Consensus 237 Dq 238 (262)
-+
T Consensus 86 ~~ 87 (423)
T PF03345_consen 86 SD 87 (423)
T ss_pred CC
Confidence 33
No 289
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=38.06 E-value=90 Score=27.96 Aligned_cols=100 Identities=18% Similarity=0.253 Sum_probs=56.5
Q ss_pred ccHHHHHhhhcCCcccccHHHHHHHHHHHHhhcccccCCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHh
Q 024820 70 RCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDL 149 (262)
Q Consensus 70 ~C~~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~~~~~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~ 149 (262)
.|+-.++.|.+.+.|.+.++.-.+++.+ + -.++.||..----+++..|. |....+++
T Consensus 218 r~kVEl~~gTeddeYLrkl~r~l~~sl~---e------f~Pd~VvYNAGTDiLeGDpL------G~L~ISp~-------- 274 (324)
T KOG1344|consen 218 RCKVELRNGTEDDEYLRKLKRCLMQSLA---E------FRPDMVVYNAGTDILEGDPL------GNLAISPE-------- 274 (324)
T ss_pred hheeeeecCCCchHHHHHHHHHHHHHHH---h------hCCcEEEEeCCCccccCCCC------CCeeeccc--------
Confidence 3444456677777888777777776654 2 23556666543334444431 21111111
Q ss_pred cCCCCChHHHHHHHHHHHCCCeEEEEccCcc-----ccHHHHHHHHHhcCC
Q 024820 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNE-----FQRNTTEKNLLFAGY 195 (262)
Q Consensus 150 ~~a~~ipgalell~~Lk~~GikI~~vTgR~e-----~~r~~T~~nL~~~G~ 195 (262)
-.+.--.-.++..+++|++++.+|+-.- ..-...+.||..+|+
T Consensus 275 ---Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~sArvIaDSI~NL~~qGL 322 (324)
T KOG1344|consen 275 ---GIIERDELVFRTFRALGIPVVMLTSGGYLKASARVIADSIVNLRLQGL 322 (324)
T ss_pred ---ccchhhHHHHHHHHHcCCcEEEEecCceehhhhhhhHHHHHhHhhhcc
Confidence 1112223457788999999998887542 223455678887775
No 290
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=37.28 E-value=2.1e+02 Score=22.79 Aligned_cols=82 Identities=13% Similarity=0.082 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHCCCeEEEEccCccc---cHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEE
Q 024820 157 ASLTFYKELKQLGFKIFLLTGRNEF---QRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHG 233 (262)
Q Consensus 157 galell~~Lk~~GikI~~vTgR~e~---~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~ 233 (262)
...++++.+++.+..++.+|+-... .-..+.+.|++.|+.. ..+++.+.-.-+. .-....+.+|.+.|+.-+.
T Consensus 38 ~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~-v~vivGG~~~i~~---~d~~~~~~~L~~~Gv~~vf 113 (128)
T cd02072 38 PQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKD-ILLYVGGNLVVGK---QDFEDVEKRFKEMGFDRVF 113 (128)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCC-CeEEEECCCCCCh---hhhHHHHHHHHHcCCCEEE
Confidence 3456777788888888888874432 3456778888888865 5566665321111 0112334556677887555
Q ss_pred EECCCcccc
Q 024820 234 SSGDQWSDL 242 (262)
Q Consensus 234 ~IGDq~sDl 242 (262)
--|+...++
T Consensus 114 ~pgt~~~~i 122 (128)
T cd02072 114 APGTPPEEA 122 (128)
T ss_pred CcCCCHHHH
Confidence 455555444
No 291
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=36.73 E-value=31 Score=25.26 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=18.3
Q ss_pred CCceEEEecCCCccCChhHHHH
Q 024820 109 GKDAWVFDIDETLLSNLPYYAA 130 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~ 130 (262)
+.-.++++-|||.+++..|...
T Consensus 39 ~~~~lvL~eDGT~Vd~EeyF~~ 60 (78)
T cd06539 39 GLVTLVLEEDGTVVDTEEFFQT 60 (78)
T ss_pred CCcEEEEeCCCCEEccHHHHhh
Confidence 4568999999999999887643
No 292
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.67 E-value=65 Score=29.18 Aligned_cols=53 Identities=13% Similarity=0.216 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhc
Q 024820 138 FNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFA 193 (262)
Q Consensus 138 ~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~ 193 (262)
|+....++.+.........|+.+++..|+++++++++.|.-- -+.+++-+++.
T Consensus 123 f~k~~I~~~Va~s~i~lReg~~~ff~~L~~~~IP~~iFSAGi---gdiiEev~~q~ 175 (298)
T KOG3128|consen 123 FSKNAIDDIVAESNIALREGYEEFFEALQAHEIPLLIFSAGI---GDIIEEVTRQK 175 (298)
T ss_pred cCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEEecch---HHHHHHHHHHH
Confidence 444555666666666777899999999999999999999876 67777777664
No 293
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=36.00 E-value=26 Score=25.41 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=17.7
Q ss_pred CCceEEEecCCCccCChhHHH
Q 024820 109 GKDAWVFDIDETLLSNLPYYA 129 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~ 129 (262)
+.-.++++-|||.+++..|..
T Consensus 37 ~~~~l~L~eDGT~VddEeyF~ 57 (74)
T smart00266 37 SPVTLVLEEDGTIVDDEEYFQ 57 (74)
T ss_pred CCcEEEEecCCcEEccHHHHh
Confidence 456899999999999988764
No 294
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=35.85 E-value=2.3e+02 Score=22.75 Aligned_cols=82 Identities=13% Similarity=0.054 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHCCCeEEEEccCcccc---HHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEE
Q 024820 157 ASLTFYKELKQLGFKIFLLTGRNEFQ---RNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHG 233 (262)
Q Consensus 157 galell~~Lk~~GikI~~vTgR~e~~---r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~ 233 (262)
...++++.+++.+..++-+|+..... -..+.+-|++.|+.. ..+++.+.-.-+. .-....+.++++.|+.-+.
T Consensus 40 ~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~-~~vivGG~~vi~~---~d~~~~~~~l~~~Gv~~vF 115 (134)
T TIGR01501 40 PQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEG-ILLYVGGNLVVGK---QDFPDVEKRFKEMGFDRVF 115 (134)
T ss_pred CHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCC-CEEEecCCcCcCh---hhhHHHHHHHHHcCCCEEE
Confidence 34567777888888888888866432 345677888888865 3344444211111 1112234456677876444
Q ss_pred EECCCcccc
Q 024820 234 SSGDQWSDL 242 (262)
Q Consensus 234 ~IGDq~sDl 242 (262)
--|+.+.++
T Consensus 116 ~pgt~~~~i 124 (134)
T TIGR01501 116 APGTPPEVV 124 (134)
T ss_pred CcCCCHHHH
Confidence 444454444
No 295
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=35.66 E-value=2.2e+02 Score=22.55 Aligned_cols=77 Identities=13% Similarity=0.026 Sum_probs=44.7
Q ss_pred HHHHHHHHHHCCCeEEEEccCcccc---HHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEE
Q 024820 158 SLTFYKELKQLGFKIFLLTGRNEFQ---RNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGS 234 (262)
Q Consensus 158 alell~~Lk~~GikI~~vTgR~e~~---r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~ 234 (262)
..++++.+++.+..++.+|+-...+ -..+.+-|++.|.+. ..++..+.- | ...+..+.+.|..-+..
T Consensus 42 ~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~-i~vivGG~~----~-----~~~~~~l~~~Gvd~~~~ 111 (132)
T TIGR00640 42 PEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPD-ILVVVGGVI----P-----PQDFDELKEMGVAEIFG 111 (132)
T ss_pred HHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCC-CEEEEeCCC----C-----hHhHHHHHHCCCCEEEC
Confidence 3466777778888888888877543 344556677777643 334443211 1 12233455667776666
Q ss_pred ECCCcccccc
Q 024820 235 SGDQWSDLLG 244 (262)
Q Consensus 235 IGDq~sDl~g 244 (262)
.|.+..++..
T Consensus 112 ~gt~~~~i~~ 121 (132)
T TIGR00640 112 PGTPIPESAI 121 (132)
T ss_pred CCCCHHHHHH
Confidence 6666665543
No 296
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=35.31 E-value=49 Score=27.94 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=25.1
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccCccc
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGRNEF 181 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR~e~ 181 (262)
--+.+++.++.++++|++++-+|||+-.
T Consensus 121 NS~nVl~Ai~~Ak~~gm~vI~ltG~~GG 148 (176)
T COG0279 121 NSKNVLKAIEAAKEKGMTVIALTGKDGG 148 (176)
T ss_pred CCHHHHHHHHHHHHcCCEEEEEecCCCc
Confidence 3578999999999999999999999954
No 297
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=34.76 E-value=33 Score=25.33 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=18.2
Q ss_pred CCceEEEecCCCccCChhHHHH
Q 024820 109 GKDAWVFDIDETLLSNLPYYAA 130 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~ 130 (262)
..-.++++-|||.+++..|...
T Consensus 38 ~~~~lvLeeDGT~Vd~EeyF~t 59 (81)
T cd06537 38 GVLTLVLEEDGTAVDSEDFFEL 59 (81)
T ss_pred CceEEEEecCCCEEccHHHHhh
Confidence 3468999999999999887643
No 298
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=34.71 E-value=65 Score=27.05 Aligned_cols=69 Identities=6% Similarity=-0.025 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHHhhcccccCCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 024820 87 DSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELK 166 (262)
Q Consensus 87 d~~~v~~~a~~y~~~~~~~~~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk 166 (262)
+......||..+.+.++.. + +...+++|++.+-..+. ..+... ....+.++++.++
T Consensus 68 ~~~~a~~qA~~f~~~~~~~-~-~~~~~~lD~E~~~~~~~-----------~~~~~~-----------~~~~~~~f~~~v~ 123 (191)
T cd06414 68 TVAEAREEAEFVLRLIKGY-K-LSYPVYYDLEDETQLGA-----------GLSKDQ-----------RTDIANAFCETIE 123 (191)
T ss_pred CHHHHHHHHHHHHHHhhcc-C-CCCCeEEEeecCCCCCC-----------CCCHHH-----------HHHHHHHHHHHHH
Confidence 3445678888887776554 2 22346789987532210 001111 2235688899999
Q ss_pred HCCCeEEEEccCc
Q 024820 167 QLGFKIFLLTGRN 179 (262)
Q Consensus 167 ~~GikI~~vTgR~ 179 (262)
+.|+++++=|+++
T Consensus 124 ~~G~~~~iY~~~~ 136 (191)
T cd06414 124 AAGYYPGIYANLS 136 (191)
T ss_pred HcCCCeEEEecHH
Confidence 9999999999987
No 299
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=34.42 E-value=83 Score=32.82 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=33.5
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCC
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGY 195 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~ 195 (262)
..-+|....++++|+++|++++.+-.=.-.+....-+-+.+.|+
T Consensus 317 ~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy 360 (772)
T COG1501 317 PDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGY 360 (772)
T ss_pred cccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCe
Confidence 45567778999999999999999887554444555666777777
No 300
>PRK13938 phosphoheptose isomerase; Provisional
Probab=34.41 E-value=52 Score=28.16 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=25.1
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEccCccc
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTGRNEF 181 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTgR~e~ 181 (262)
.--+.+++.++.++++|.+++.+|+.+..
T Consensus 124 G~t~~vi~a~~~Ak~~G~~vI~iT~~~~s 152 (196)
T PRK13938 124 GNSMSVLRAAKTARELGVTVVAMTGESGG 152 (196)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 34688999999999999999999998743
No 301
>PRK07475 hypothetical protein; Provisional
Probab=34.27 E-value=3.2e+02 Score=23.96 Aligned_cols=120 Identities=20% Similarity=0.190 Sum_probs=71.6
Q ss_pred ecCCccccCCCCcCcceeEeeeeecCcccccccCcccHHHHHhhhcCCcccccHHHHHHHHHHHHhhcccccCCCCceEE
Q 024820 35 FAGDRKIRAGDELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWV 114 (262)
Q Consensus 35 ~~~~~~~~~~~~~~c~sw~~~ve~nn~~~~~~vP~~C~~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~~~~~~~~~aiI 114 (262)
.+-++.| .+-..-.+|-+-|..+-+++- ++. +-..++ ..+. ...-.+-++.+.. .+-++|+
T Consensus 23 ~~~p~~p--gd~~~~~t~~~pv~~~~v~g~-~~~--------~~~~~~--~~~~---~~~l~~aa~~L~~---~G~d~I~ 83 (245)
T PRK07475 23 TRFPRIP--GDVGNAATWPFPVRYKVVRGA-TPE--------RVVEGD--DPSL---LDAFVAAARELEA---EGVRAIT 83 (245)
T ss_pred cCCCCCC--CCCCCcccCCcCEEEEeeCCC-CHH--------HHhcCC--CccH---HHHHHHHHHHHHH---cCCCEEE
Confidence 3444444 346677899999999988873 331 111111 1222 2222233333332 3677888
Q ss_pred EecCCCccCChhHHHHhccCCcCCCHHHHHHHHH-hcCCCCChHHHHHHHHHHHC---CCeEEEEccCccccHHHHHHHH
Q 024820 115 FDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVD-LAKAPALPASLTFYKELKQL---GFKIFLLTGRNEFQRNTTEKNL 190 (262)
Q Consensus 115 fDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~-~~~a~~ipgalell~~Lk~~---GikI~~vTgR~e~~r~~T~~nL 190 (262)
+-+ ||+ .+ |.+-++ .-..|.+-.+...+..+++. +-+|.++|.... ..+.+.|
T Consensus 84 ~~C-gt~----~~---------------~~~~l~~~~~VPv~~ss~~~v~~l~~~~~~~~kIGILtt~~t---~l~~~~l 140 (245)
T PRK07475 84 TSC-GFL----AL---------------FQRELAAALGVPVATSSLLQVPLIQALLPAGQKVGILTADAS---SLTPAHL 140 (245)
T ss_pred ech-HHH----HH---------------HHHHHHHHcCCCEeccHHHHHHHHHHhccCCCeEEEEeCCch---hhhHHHH
Confidence 888 321 11 111122 23467777777777777765 689999999984 5778999
Q ss_pred HhcCCC
Q 024820 191 LFAGYS 196 (262)
Q Consensus 191 ~~~G~~ 196 (262)
.+.|++
T Consensus 141 ~~~Gi~ 146 (245)
T PRK07475 141 LAVGVP 146 (245)
T ss_pred HhCCCC
Confidence 999996
No 302
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=33.78 E-value=2.1e+02 Score=21.70 Aligned_cols=69 Identities=20% Similarity=0.182 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEE
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGS 234 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~ 234 (262)
.+...++.+.|.+.|++|+ .|+ .|.+.|++.|++. ..+....+..... +......+.+..+..+++
T Consensus 12 k~~~~~~a~~l~~~G~~i~-aT~-------gTa~~L~~~gi~~--~~v~~~~~~~~~~----~~~i~~~i~~~~idlVIn 77 (116)
T cd01423 12 KPELLPTAQKLSKLGYKLY-ATE-------GTADFLLENGIPV--TPVAWPSEEPQND----KPSLRELLAEGKIDLVIN 77 (116)
T ss_pred chhHHHHHHHHHHCCCEEE-Ecc-------HHHHHHHHcCCCc--eEeeeccCCCCCC----chhHHHHHHcCCceEEEE
Confidence 4677889999999999996 444 4678999999975 2332211111100 112333444456677777
Q ss_pred ECC
Q 024820 235 SGD 237 (262)
Q Consensus 235 IGD 237 (262)
+=+
T Consensus 78 ~~~ 80 (116)
T cd01423 78 LPS 80 (116)
T ss_pred CCC
Confidence 643
No 303
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=33.64 E-value=2.4e+02 Score=25.07 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHCCCeEEEE-cc-------------Cc--cccHH------------HHHHHHHhcCCCCcceeEeeCC
Q 024820 155 LPASLTFYKELKQLGFKIFLL-TG-------------RN--EFQRN------------TTEKNLLFAGYSDWKKLFLRGP 206 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~v-Tg-------------R~--e~~r~------------~T~~nL~~~G~~~~~~Lilr~~ 206 (262)
+..+.+.+..++++|+++++| || |+ ...++ .....|.+.|++. .++++..+
T Consensus 33 i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~~~~~~~~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~-~q~llT~~ 111 (266)
T PRK12314 33 IEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLDKRPTSLAEKQALAAVGQPELMSLYSKFFAEYGIVV-AQILLTRD 111 (266)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeeCcccccceeeccccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCeE-EEEEEecc
Confidence 345566777888999999987 54 11 11111 1246677889876 35566554
Q ss_pred CCCCCCchhhhHHHHHhhhhcCccEEEE
Q 024820 207 SDQGKPATVYKSEKRLELVNEGYRIHGS 234 (262)
Q Consensus 207 ~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~ 234 (262)
+................+.+.|+-++++
T Consensus 112 ~~~~~~~~~~~~~~l~~ll~~g~IPVv~ 139 (266)
T PRK12314 112 DFDSPKSRANVKNTFESLLELGILPIVN 139 (266)
T ss_pred cccchHHHHHHHHHHHHHHHCCCEEEEc
Confidence 4321110011123344555667766665
No 304
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=33.58 E-value=82 Score=28.21 Aligned_cols=51 Identities=14% Similarity=0.209 Sum_probs=38.3
Q ss_pred cCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCC
Q 024820 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGP 206 (262)
Q Consensus 150 ~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~ 206 (262)
...++.||=...=+.|++.|++.+++|..+... ..+.|+..||.. +++..+
T Consensus 68 sPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K---~~d~l~~~g~GY---Iivk~D 118 (277)
T PRK00994 68 SPNPAAPGPKKAREILKAAGIPCIVIGDAPGKK---VKDAMEEQGLGY---IIVKAD 118 (277)
T ss_pred CCCCCCCCchHHHHHHHhcCCCEEEEcCCCccc---hHHHHHhcCCcE---EEEecC
Confidence 456777887777777889999999999998543 238999999864 455543
No 305
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=33.54 E-value=63 Score=24.87 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC
Q 024820 157 ASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 157 galell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~ 197 (262)
..+.+-+.|+++|++|.+.|... .++.+++.|++.
T Consensus 14 P~lala~~L~~rGh~V~~~~~~~------~~~~v~~~Gl~~ 48 (139)
T PF03033_consen 14 PFLALARALRRRGHEVRLATPPD------FRERVEAAGLEF 48 (139)
T ss_dssp HHHHHHHHHHHTT-EEEEEETGG------GHHHHHHTT-EE
T ss_pred HHHHHHHHHhccCCeEEEeeccc------ceecccccCceE
Confidence 45788999999999999999976 223347788863
No 306
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=33.52 E-value=87 Score=22.42 Aligned_cols=14 Identities=14% Similarity=-0.045 Sum_probs=10.2
Q ss_pred hcCccEEEEECCCc
Q 024820 226 NEGYRIHGSSGDQW 239 (262)
Q Consensus 226 ~~g~~iv~~IGDq~ 239 (262)
+.|++.++.||++.
T Consensus 52 ~~g~~~~iiiG~~e 65 (94)
T cd00861 52 LIGIPYRIVVGKKS 65 (94)
T ss_pred hcCCCEEEEECCch
Confidence 55788888888663
No 307
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=33.51 E-value=1.2e+02 Score=20.42 Aligned_cols=39 Identities=23% Similarity=0.208 Sum_probs=26.3
Q ss_pred HHHHHHHHHHCCCeEEEEccCcccc-HHHHHHHHHhcCCC
Q 024820 158 SLTFYKELKQLGFKIFLLTGRNEFQ-RNTTEKNLLFAGYS 196 (262)
Q Consensus 158 alell~~Lk~~GikI~~vTgR~e~~-r~~T~~nL~~~G~~ 196 (262)
..++++.++++|++.+.+|....-. -....+..++.|+.
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~ 56 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIK 56 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCe
Confidence 5688999999999999999987322 22333444455553
No 308
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=33.37 E-value=2.7e+02 Score=26.45 Aligned_cols=88 Identities=10% Similarity=0.129 Sum_probs=51.3
Q ss_pred CCeEEEEccCcccc-----HHHHHHHHHhcCCCC--cceeEeeCCCCCCCCchhhhHHHHHhhhhcCcc---EEEEEC-C
Q 024820 169 GFKIFLLTGRNEFQ-----RNTTEKNLLFAGYSD--WKKLFLRGPSDQGKPATVYKSEKRLELVNEGYR---IHGSSG-D 237 (262)
Q Consensus 169 GikI~~vTgR~e~~-----r~~T~~nL~~~G~~~--~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~---iv~~IG-D 237 (262)
+-++++||++.-.. .+...+.|.+.|+.. +...+.-..++..||.+..-......+.+.+.. .++.|| -
T Consensus 42 ~~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGG 121 (389)
T PRK06203 42 PKKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGGG 121 (389)
T ss_pred CCeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCc
Confidence 47899999875322 245567777788743 334444455666776533233444445555554 666666 4
Q ss_pred Ccccccccc-----ccccEEEeCC
Q 024820 238 QWSDLLGFA-----KAERSFKLPN 256 (262)
Q Consensus 238 q~sDl~g~~-----~g~r~fklPN 256 (262)
+..|+.+.- .|.+.+.+|-
T Consensus 122 sv~D~ak~iA~~~~rgip~I~IPT 145 (389)
T PRK06203 122 AVLDMVGYAAATAHRGVRLIRIPT 145 (389)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEcC
Confidence 566776543 2566777774
No 309
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=33.35 E-value=2.5e+02 Score=22.41 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=47.3
Q ss_pred HHHHHHHHHHCCCeEEEEccCcccc---HHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEE
Q 024820 158 SLTFYKELKQLGFKIFLLTGRNEFQ---RNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGS 234 (262)
Q Consensus 158 alell~~Lk~~GikI~~vTgR~e~~---r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~ 234 (262)
..++.+.+.+.+..++.+|...... -..+.+.|++.|++. -.+++.+.-..++ ..-...+..+++.|+..+.-
T Consensus 43 ~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~-~~i~vGG~~~~~~---~~~~~~~~~l~~~G~~~vf~ 118 (137)
T PRK02261 43 QEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGD-ILLYVGGNLVVGK---HDFEEVEKKFKEMGFDRVFP 118 (137)
T ss_pred HHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCC-CeEEEECCCCCCc---cChHHHHHHHHHcCCCEEEC
Confidence 4566677788888899888766543 345567777888875 4566666432111 11123445566778765433
Q ss_pred ECCCcccc
Q 024820 235 SGDQWSDL 242 (262)
Q Consensus 235 IGDq~sDl 242 (262)
-|..+.++
T Consensus 119 ~~~~~~~i 126 (137)
T PRK02261 119 PGTDPEEA 126 (137)
T ss_pred cCCCHHHH
Confidence 34444433
No 310
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=33.13 E-value=35 Score=28.76 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=19.3
Q ss_pred EEEEECCCccccccccccccEEEeCC
Q 024820 231 IHGSSGDQWSDLLGFAKAERSFKLPN 256 (262)
Q Consensus 231 iv~~IGDq~sDl~g~~~g~r~fklPN 256 (262)
.++.|||+.+|+.........|...|
T Consensus 167 ~~i~~GD~~NDi~m~~~ag~~vam~N 192 (225)
T TIGR01482 167 ETLVCGDSENDIDLFEVPGFGVAVAN 192 (225)
T ss_pred HEEEECCCHhhHHHHHhcCceEEcCC
Confidence 58899999999988764334566555
No 311
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=32.81 E-value=36 Score=24.91 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=18.8
Q ss_pred CCCceEEEecCCCccCChhHHHH
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAA 130 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~ 130 (262)
+..-.++++-|||.+++..|...
T Consensus 38 ~~~~~lvL~eDGTeVddEeYF~t 60 (78)
T cd01615 38 SAPVTLVLEEDGTEVDDEEYFQT 60 (78)
T ss_pred CCCeEEEEeCCCcEEccHHHHhc
Confidence 35567999999999999888643
No 312
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=32.58 E-value=38 Score=24.95 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=18.4
Q ss_pred CCceEEEecCCCccCChhHHHH
Q 024820 109 GKDAWVFDIDETLLSNLPYYAA 130 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~~ 130 (262)
..-.++++-|||.+++..|...
T Consensus 41 ~~~~lvL~eDGT~VddEeyF~t 62 (80)
T cd06536 41 APITLVLAEDGTIVEDEDYFLC 62 (80)
T ss_pred CceEEEEecCCcEEccHHHHhh
Confidence 4678999999999999887643
No 313
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=32.16 E-value=60 Score=30.84 Aligned_cols=67 Identities=22% Similarity=0.309 Sum_probs=37.7
Q ss_pred HHHHHHHHHHCCCeEEEEccCccccH---------------------HHHHHHHHhcCCCCcceeEeeCCCCCCCCchhh
Q 024820 158 SLTFYKELKQLGFKIFLLTGRNEFQR---------------------NTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVY 216 (262)
Q Consensus 158 alell~~Lk~~GikI~~vTgR~e~~r---------------------~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~ 216 (262)
+--+-++++.+|.+++++||-++... +.-.+.++++|+.. +.++|..++..+ ..
T Consensus 25 ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~--D~F~rTt~~~h~---~~ 99 (391)
T PF09334_consen 25 ADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISY--DRFIRTTDDRHK---EF 99 (391)
T ss_dssp HHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT-----SEEEETTSHHHH---HH
T ss_pred HHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC--cceeCCCCHHHH---HH
Confidence 33455788899999999999987521 22345667778763 457775432211 12
Q ss_pred hHHHHHhhhhcCc
Q 024820 217 KSEKRLELVNEGY 229 (262)
Q Consensus 217 Ks~~r~~L~~~g~ 229 (262)
-....++|.+.|+
T Consensus 100 v~~i~~~L~~~G~ 112 (391)
T PF09334_consen 100 VQEIFKRLYDNGY 112 (391)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCc
Confidence 2345556666666
No 314
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=31.90 E-value=83 Score=28.09 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCC
Q 024820 157 ASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (262)
Q Consensus 157 galell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~ 196 (262)
-++.|.+.|+++|.++.|++...+. .-.+.+++.|++
T Consensus 19 Rcl~LA~~l~~~g~~v~f~~~~~~~---~~~~~i~~~g~~ 55 (279)
T TIGR03590 19 RCLTLARALHAQGAEVAFACKPLPG---DLIDLLLSAGFP 55 (279)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCH---HHHHHHHHcCCe
Confidence 3466677777777888777777632 224566666764
No 315
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=31.87 E-value=3.9e+02 Score=24.38 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=32.5
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeC
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRG 205 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~ 205 (262)
..|...+++++++++|..+.+.||-.--. .....|...|+.. ..+-+.+
T Consensus 85 L~pdl~eiv~~~~~~g~~v~l~TNG~ll~--~~~~~l~~~~~~~-i~VSLDG 133 (318)
T TIGR03470 85 LHPEIDEIVRGLVARKKFVYLCTNALLLE--KKLDKFEPSPYLT-FSVHLDG 133 (318)
T ss_pred ccccHHHHHHHHHHcCCeEEEecCceehH--HHHHHHHhCCCcE-EEEEEec
Confidence 34677889999999999999999976322 2245566667643 3344443
No 316
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=31.85 E-value=28 Score=30.29 Aligned_cols=15 Identities=27% Similarity=0.138 Sum_probs=13.0
Q ss_pred ceEEEecCCCccCCh
Q 024820 111 DAWVFDIDETLLSNL 125 (262)
Q Consensus 111 ~aiIfDIDgTlldn~ 125 (262)
++|++||.||+.+-+
T Consensus 2 ~~~l~diegt~~~is 16 (220)
T TIGR01691 2 KNVLLDIEGTTGSIS 16 (220)
T ss_pred CEEEEecCCCcccHH
Confidence 589999999999853
No 317
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=31.71 E-value=41 Score=29.61 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=27.7
Q ss_pred CCCCchhhhHHHHHhhhhcCccEEEEECCCcc-cccccc-ccccEEEe
Q 024820 209 QGKPATVYKSEKRLELVNEGYRIHGSSGDQWS-DLLGFA-KAERSFKL 254 (262)
Q Consensus 209 ~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~s-Dl~g~~-~g~r~fkl 254 (262)
-+||.+.|.+...+.+.- ....+.+|||..+ |+-|+. .|||-+.+
T Consensus 179 vGKP~~~fFe~al~~~gv-~p~~aVMIGDD~~dDvgGAq~~GMrgilV 225 (262)
T KOG3040|consen 179 VGKPSPFFFESALQALGV-DPEEAVMIGDDLNDDVGGAQACGMRGILV 225 (262)
T ss_pred ecCCCHHHHHHHHHhcCC-ChHHheEEccccccchhhHhhhcceeEEe
Confidence 367777776665555431 2335778998776 455544 68887655
No 318
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=31.64 E-value=61 Score=27.72 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=24.0
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccCcc
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGRNE 180 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR~e 180 (262)
--+.+.+.++.++++|.+++.+|+.+.
T Consensus 121 ~s~~v~~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 121 NSRDIVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 357899999999999999999999873
No 319
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=31.52 E-value=34 Score=25.16 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=17.8
Q ss_pred CceEEEecCCCccCChhHHHH
Q 024820 110 KDAWVFDIDETLLSNLPYYAA 130 (262)
Q Consensus 110 ~~aiIfDIDgTlldn~~y~~~ 130 (262)
...++++-|||.+++..|...
T Consensus 39 ~~~lvL~eDGT~Vd~EeyF~t 59 (79)
T cd06538 39 ISSLVLDEDGTGVDTEEFFQA 59 (79)
T ss_pred ccEEEEecCCcEEccHHHHhh
Confidence 467999999999999888643
No 320
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=31.46 E-value=67 Score=26.75 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhcccccCCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHC-C
Q 024820 91 VSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQL-G 169 (262)
Q Consensus 91 v~~~a~~y~~~~~~~~~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~-G 169 (262)
...||..+.+.++.. .+...+++|+.++--.+ .... ...+.++++.++++ |
T Consensus 66 a~~qA~~f~~~~~~~--~~~~~~~lD~E~~~~~~---------------~~~~-----------~~~~~~f~~~v~~~~G 117 (184)
T cd06525 66 PEEQAENFYNTIKGK--KMDLKPALDVEVNFGLS---------------KDEL-----------NDYVLRFIEEFEKLSG 117 (184)
T ss_pred HHHHHHHHHHhcccc--CCCCCeEEEEecCCCCC---------------HHHH-----------HHHHHHHHHHHHHHHC
Confidence 558888888776553 22345789999863111 0111 13668899999998 9
Q ss_pred CeEEEEccCc
Q 024820 170 FKIFLLTGRN 179 (262)
Q Consensus 170 ikI~~vTgR~ 179 (262)
+++++=|+..
T Consensus 118 ~~~~iY~~~~ 127 (184)
T cd06525 118 LKVGIYTYTS 127 (184)
T ss_pred CCeEEEecHH
Confidence 9999999987
No 321
>PRK13936 phosphoheptose isomerase; Provisional
Probab=31.33 E-value=62 Score=27.47 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=23.7
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccCcc
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGRNE 180 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR~e 180 (262)
--+.+.++++.++++|.+++.+|+.+.
T Consensus 123 ~t~~~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 123 NSANVIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 357889999999999999999999763
No 322
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=31.17 E-value=93 Score=23.37 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=29.9
Q ss_pred HHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCC
Q 024820 158 SLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (262)
Q Consensus 158 alell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~ 196 (262)
+..+.++|+++|+.++.-+... .+...+.++++|+.
T Consensus 41 ~~~~~~~L~~~g~P~Y~hv~~~---N~~~~r~~~~lg~~ 76 (89)
T PF08444_consen 41 MYHLAQYLHKLGFPFYGHVDED---NEASQRLSKSLGFI 76 (89)
T ss_pred HHHHHHHHHHCCCCeEeehHhc---cHHHHHHHHHCCCe
Confidence 4677889999999999888877 67778888888875
No 323
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=31.15 E-value=1.2e+02 Score=23.24 Aligned_cols=39 Identities=13% Similarity=0.028 Sum_probs=31.0
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhc-CCC
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFA-GYS 196 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~-G~~ 196 (262)
+|...++++++++.|+.++.||.-+ .....++.++. +++
T Consensus 42 ~~~l~~~~~~~~~~~~~~i~is~d~---~~~~~~~~~~~~~~~ 81 (140)
T cd02971 42 LCAFRDLAEEFAKGGAEVLGVSVDS---PFSHKAWAEKEGGLN 81 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHhcccCCC
Confidence 6788888888988999999999765 55667788887 553
No 324
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=30.73 E-value=1.1e+02 Score=28.24 Aligned_cols=26 Identities=4% Similarity=-0.084 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHCCCeEEEEccCcccc
Q 024820 157 ASLTFYKELKQLGFKIFLLTGRNEFQ 182 (262)
Q Consensus 157 galell~~Lk~~GikI~~vTgR~e~~ 182 (262)
.+.++.+.+++++-.+.+|.+|....
T Consensus 192 ~i~~Ia~~ar~~~P~~~II~NnG~ei 217 (315)
T TIGR01370 192 FVCEIAAYARAQNPQFVIIPQNGEEL 217 (315)
T ss_pred HHHHHHHHHHHHCCCEEEEecCchhh
Confidence 33344444499999999999998554
No 325
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=30.73 E-value=64 Score=27.33 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=23.9
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccCcc
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGRNE 180 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR~e 180 (262)
-.+.+.+.++.++++|.+++.+|+...
T Consensus 123 ~t~~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 123 NSGNIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 357889999999999999999999864
No 326
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=30.65 E-value=1.7e+02 Score=20.42 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=25.0
Q ss_pred HHHHHHHHHHCCCeEEEEccCcccc-------HHHHHHHHHhcCCC
Q 024820 158 SLTFYKELKQLGFKIFLLTGRNEFQ-------RNTTEKNLLFAGYS 196 (262)
Q Consensus 158 alell~~Lk~~GikI~~vTgR~e~~-------r~~T~~nL~~~G~~ 196 (262)
..|+...|.+.|.++.++..++.-. +....+.|++.|+.
T Consensus 11 g~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~ 56 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVE 56 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCE
Confidence 4677778888888888888876322 33444555555543
No 327
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=30.27 E-value=1.6e+02 Score=25.52 Aligned_cols=28 Identities=18% Similarity=0.073 Sum_probs=19.7
Q ss_pred ccEEEEECCCccccccccccccEEEeCC
Q 024820 229 YRIHGSSGDQWSDLLGFAKAERSFKLPN 256 (262)
Q Consensus 229 ~~iv~~IGDq~sDl~g~~~g~r~fklPN 256 (262)
...++.|||+.+|+.--......|...|
T Consensus 194 ~~~~~a~GD~~ND~~Ml~~ag~~vam~N 221 (256)
T TIGR01486 194 AIKVVGLGDSPNDLPLLEVVDLAVVVPG 221 (256)
T ss_pred CceEEEEcCCHhhHHHHHHCCEEEEeCC
Confidence 4568999999999986653334555544
No 328
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=30.19 E-value=54 Score=21.26 Aligned_cols=32 Identities=31% Similarity=0.239 Sum_probs=25.7
Q ss_pred HHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhc
Q 024820 159 LTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFA 193 (262)
Q Consensus 159 lell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~ 193 (262)
.|+-.+|++.|+...=||..+ |...++-|+++
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sT---R~vy~kkL~~~ 40 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTT---RKLYEKKLRKL 40 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcch---HHHHHHHHHHH
Confidence 467788889999888888877 88888777764
No 329
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=29.78 E-value=1.1e+02 Score=28.18 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=31.6
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~ 197 (262)
.|...+++++++++|+.+.+.||-.- ..+.+.+.|.++|+..
T Consensus 67 ~~~~~~ii~~~~~~g~~~~l~TNG~l-l~~e~~~~L~~~g~~~ 108 (358)
T TIGR02109 67 RPDLVELVAHARRLGLYTNLITSGVG-LTEARLDALADAGLDH 108 (358)
T ss_pred cccHHHHHHHHHHcCCeEEEEeCCcc-CCHHHHHHHHhCCCCE
Confidence 46678899999999999999998652 2345667788888753
No 330
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=29.45 E-value=1.2e+02 Score=24.61 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHh
Q 024820 156 PASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF 192 (262)
Q Consensus 156 pgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~ 192 (262)
+.+.++++.++++|+++.+-||... .+.+.+.+..
T Consensus 75 ~~l~~ll~~lk~~Gl~i~l~Tg~~~--~~~~~~il~~ 109 (147)
T TIGR02826 75 EALLSLLKIFKEKGLKTCLYTGLEP--KDIPLELVQH 109 (147)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC--HHHHHHHHHh
Confidence 4678999999999999999999652 2334455443
No 331
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=29.28 E-value=2e+02 Score=26.61 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=28.4
Q ss_pred HHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCC
Q 024820 159 LTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGY 195 (262)
Q Consensus 159 lell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~ 195 (262)
++.-++|.++|++|++||...++......+..++++.
T Consensus 63 KayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~v 99 (312)
T KOG1014|consen 63 KAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKV 99 (312)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCc
Confidence 4566788899999888877666766677777778884
No 332
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=29.03 E-value=46 Score=28.19 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=19.0
Q ss_pred EEEEECCCccccccccccccEEEeCC
Q 024820 231 IHGSSGDQWSDLLGFAKAERSFKLPN 256 (262)
Q Consensus 231 iv~~IGDq~sDl~g~~~g~r~fklPN 256 (262)
.+++|||+.+|+.........|..-|
T Consensus 175 ~~i~~GD~~NDi~m~~~ag~~vam~N 200 (230)
T PRK01158 175 EVAAIGDSENDLEMFEVAGFGVAVAN 200 (230)
T ss_pred HEEEECCchhhHHHHHhcCceEEecC
Confidence 58999999999988764334555544
No 333
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=28.80 E-value=1.5e+02 Score=23.46 Aligned_cols=39 Identities=10% Similarity=-0.020 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCC
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~ 196 (262)
++...++.+.++++|+.++-||-.+ .+...+++++.|++
T Consensus 50 ~~~l~~~~~~~~~~~v~vi~Is~d~---~~~~~~~~~~~~~~ 88 (154)
T PRK09437 50 ACGLRDNMDELKKAGVVVLGISTDK---PEKLSRFAEKELLN 88 (154)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHhCCC
Confidence 4556778888899999999998754 56777889999886
No 334
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=28.75 E-value=2.5e+02 Score=22.36 Aligned_cols=48 Identities=13% Similarity=0.078 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHCCCeEEEEccCcccc-------HHHHHHHHHhcCCCCcceeEee
Q 024820 157 ASLTFYKELKQLGFKIFLLTGRNEFQ-------RNTTEKNLLFAGYSDWKKLFLR 204 (262)
Q Consensus 157 galell~~Lk~~GikI~~vTgR~e~~-------r~~T~~nL~~~G~~~~~~Lilr 204 (262)
-+..+.+.++..|+++.++..|++.. .......+....++.+..++|.
T Consensus 9 va~al~~la~~lg~~v~v~d~r~e~~~~~~~~~~~~~~~~~~~~~~~~~t~Vv~t 63 (136)
T PF13478_consen 9 VARALARLAALLGFRVTVVDPRPERFPEADEVICIPPDDILEDLEIDPNTAVVMT 63 (136)
T ss_dssp CHHHHHHHHHHCTEEEEEEES-CCC-TTSSEEECSHHHHHHHHC-S-TT-EEE--
T ss_pred HHHHHHHHHHhCCCEEEEEcCCccccCCCCccEecChHHHHhccCCCCCeEEEEc
Confidence 45778888999999999999998631 1233444456677765556554
No 335
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=28.62 E-value=81 Score=24.78 Aligned_cols=47 Identities=15% Similarity=0.139 Sum_probs=29.8
Q ss_pred ccCcccHHHHHhhhcCCcccccHHHHHHHHHHH---HhhcccccCCCCceEEEe
Q 024820 66 SVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKH---AKSANVSAGDGKDAWVFD 116 (262)
Q Consensus 66 ~vP~~C~~~v~~y~~~~~Y~~d~~~v~~~a~~y---~~~~~~~~~~~~~aiIfD 116 (262)
+-|.+....+++.+.+..|++.-. -+..|+.- |-++.. .+.+|||||
T Consensus 41 adp~qA~~~~~~rl~s~~~~~~q~-~L~~Ayqgv~~Aw~lgi---~k~PAVVfD 90 (114)
T PF07511_consen 41 ADPQQAEAQARQRLQSPDWQQLQQ-QLAQAYQGVVDAWSLGI---TKYPAVVFD 90 (114)
T ss_pred CChHHHHHHHHHHHcCccHHHHHH-HHHHHHHHHHHHHHhCc---cccCEEEEc
Confidence 556677778888899988754333 33333322 233333 478999999
No 336
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=28.31 E-value=4.4e+02 Score=24.41 Aligned_cols=77 Identities=17% Similarity=0.092 Sum_probs=43.2
Q ss_pred HHHHHCCCeEEEEccCcc-c---cHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECC-
Q 024820 163 KELKQLGFKIFLLTGRNE-F---QRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGD- 237 (262)
Q Consensus 163 ~~Lk~~GikI~~vTgR~e-~---~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGD- 237 (262)
+.+++.|-+++++|++.- . ..+...+.|++.|+.. . ++.+- ...|...--......+.+.+...++.||-
T Consensus 19 ~~~~~~g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~--~-~~~~v--~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 93 (357)
T cd08181 19 EELAALGKRALIVTGKSSAKKNGSLDDVTKALEELGIEY--E-IFDEV--EENPSLETIMEAVEIAKKFNADFVIGIGGG 93 (357)
T ss_pred HHHHHcCCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeE--E-EeCCC--CCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 455667889999999763 2 2356778888888842 1 22211 11122222223333445567776666764
Q ss_pred Ccccccc
Q 024820 238 QWSDLLG 244 (262)
Q Consensus 238 q~sDl~g 244 (262)
+.-|...
T Consensus 94 SviD~aK 100 (357)
T cd08181 94 SPLDAAK 100 (357)
T ss_pred hHHHHHH
Confidence 5556654
No 337
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=28.27 E-value=4.1e+02 Score=23.65 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHH-CCCe-EEEEccCccccHHHHHHH
Q 024820 156 PASLTFYKELKQ-LGFK-IFLLTGRNEFQRNTTEKN 189 (262)
Q Consensus 156 pgalell~~Lk~-~Gik-I~~vTgR~e~~r~~T~~n 189 (262)
...+++...+++ .|+. |.-+|.|. ..|.....+
T Consensus 44 ~~t~~~a~~l~~~~g~~~i~Hlt~r~-~n~~~l~~~ 78 (272)
T TIGR00676 44 DRTVRIVRRIKKETGIPTVPHLTCIG-ATREEIREI 78 (272)
T ss_pred HHHHHHHHHHHHhcCCCeeEEeeecC-CCHHHHHHH
Confidence 345555555552 3555 33455554 224444444
No 338
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=27.92 E-value=2.2e+02 Score=26.97 Aligned_cols=85 Identities=20% Similarity=0.216 Sum_probs=53.8
Q ss_pred CCeEEEEccCccc--cHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCcc----EEEEECCCcccc
Q 024820 169 GFKIFLLTGRNEF--QRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYR----IHGSSGDQWSDL 242 (262)
Q Consensus 169 GikI~~vTgR~e~--~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~----iv~~IGDq~sDl 242 (262)
|.+++++|+..=. +.+.....|.+.|+.. +. +.-++++..|.. +........|.+.++. +++.=|=-..|+
T Consensus 33 ~~k~~ivtd~~v~~~y~~~~~~~l~~~g~~v-~~-~~lp~GE~~Ksl-~~~~~i~~~ll~~~~~R~s~iialGGGvigDl 109 (360)
T COG0337 33 GRKVAIVTDETVAPLYLEKLLATLEAAGVEV-DS-IVLPDGEEYKSL-ETLEKIYDALLEAGLDRKSTLIALGGGVIGDL 109 (360)
T ss_pred CCeEEEEECchhHHHHHHHHHHHHHhcCCee-eE-EEeCCCcccccH-HHHHHHHHHHHHcCCCCCcEEEEECChHHHHH
Confidence 4599999998733 3567778888899865 33 444566677653 2333444444444443 444444566688
Q ss_pred cccc-----ccccEEEeCC
Q 024820 243 LGFA-----KAERSFKLPN 256 (262)
Q Consensus 243 ~g~~-----~g~r~fklPN 256 (262)
.|.. .|.+++.+|-
T Consensus 110 aGF~Aaty~RGv~fiqiPT 128 (360)
T COG0337 110 AGFAAATYMRGVRFIQIPT 128 (360)
T ss_pred HHHHHHHHHcCCCeEeccc
Confidence 7743 5889998884
No 339
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=27.86 E-value=1.2e+02 Score=25.66 Aligned_cols=67 Identities=16% Similarity=0.106 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHHHhhcccccCCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 024820 87 DSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELK 166 (262)
Q Consensus 87 d~~~v~~~a~~y~~~~~~~~~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk 166 (262)
+...+..||..+++.++...-.+...+++|+...-..+ .+.. ...+.+++++++
T Consensus 65 ~~~~a~~eA~~f~~~~~~~~l~~~~~~~lDvE~~~~~~---------------~~~~-----------~~~~~~f~~~v~ 118 (196)
T cd06415 65 SVSQAKYEADYFLNSAQQAGLPKGSYLALDYEQGSGNS---------------KAAN-----------TSAILAFMDTIK 118 (196)
T ss_pred CHHHHHHHHHHHHHHhhhcCCCCCCEEEEEEecCCCCC---------------HHHH-----------HHHHHHHHHHHH
Confidence 34556678877766554320012235889999742111 1111 134678999999
Q ss_pred HCCCeEEEEccCc
Q 024820 167 QLGFKIFLLTGRN 179 (262)
Q Consensus 167 ~~GikI~~vTgR~ 179 (262)
+.|++..+=|++.
T Consensus 119 ~~G~~~~iYt~~~ 131 (196)
T cd06415 119 DAGYKPMLYSYKP 131 (196)
T ss_pred HhCCCcEEEecHH
Confidence 9999999999986
No 340
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=27.71 E-value=3.6e+02 Score=25.14 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=50.0
Q ss_pred CCCeEEEEccCccc--cHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCc----cEEEEECC-Ccc
Q 024820 168 LGFKIFLLTGRNEF--QRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGY----RIHGSSGD-QWS 240 (262)
Q Consensus 168 ~GikI~~vTgR~e~--~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~----~iv~~IGD-q~s 240 (262)
.+-+++++|++.-. ..+...+.|++.|+.. ..+++. +++..|+..... .....+.+.+. ..++.||. ...
T Consensus 25 ~~~~~lvVtd~~v~~~~~~~v~~~l~~~g~~~-~~~v~~-~~e~~~s~~~v~-~~~~~l~~~~~~r~~d~IVaiGGG~v~ 101 (354)
T cd08199 25 GSGRRFVVVDQNVDKLYGKKLREYFAHHNIPL-TILVLR-AGEAAKTMDTVL-KIVDALDAFGISRRREPVLAIGGGVLT 101 (354)
T ss_pred CCCeEEEEECccHHHHHHHHHHHHHHhcCCce-EEEEeC-CCCCCCCHHHHH-HHHHHHHHcCCCCCCCEEEEECCcHHH
Confidence 34788999987532 3455678888888863 333333 333333322222 22233444444 66777887 777
Q ss_pred cccccc-----ccccEEEeCC
Q 024820 241 DLLGFA-----KAERSFKLPN 256 (262)
Q Consensus 241 Dl~g~~-----~g~r~fklPN 256 (262)
|+.+.- .|.+.+-+|-
T Consensus 102 D~ak~~A~~~~rg~p~i~VPT 122 (354)
T cd08199 102 DVAGLAASLYRRGTPYVRIPT 122 (354)
T ss_pred HHHHHHHHHhcCCCCEEEEcC
Confidence 887654 3677777774
No 341
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=27.70 E-value=4.1e+02 Score=23.43 Aligned_cols=22 Identities=18% Similarity=0.077 Sum_probs=13.6
Q ss_pred HHhhhhcCccE-EEEECCCcccc
Q 024820 221 RLELVNEGYRI-HGSSGDQWSDL 242 (262)
Q Consensus 221 r~~L~~~g~~i-v~~IGDq~sDl 242 (262)
-+.|.++|++- ++++|...+..
T Consensus 110 ~~~Li~~Gh~~~I~~i~~~~~~~ 132 (279)
T PF00532_consen 110 TEYLIKKGHRRPIAFIGGPEDSS 132 (279)
T ss_dssp HHHHHHTTCCSTEEEEEESTTTH
T ss_pred HHHHHhcccCCeEEEEecCcchH
Confidence 34566678877 77777654443
No 342
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=27.65 E-value=74 Score=22.74 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHHHCC-CeEEEEccCc-----cccHHHHHHHHHhcCCCC
Q 024820 154 ALPASLTFYKELKQLG-FKIFLLTGRN-----EFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 154 ~ipgalell~~Lk~~G-ikI~~vTgR~-----e~~r~~T~~nL~~~G~~~ 197 (262)
++.-+.++++.+++.| -.+.+|||+- ...+....++|++ ++..
T Consensus 11 A~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~Lk~~V~~~L~~-~~~~ 59 (83)
T PF01713_consen 11 ALRALEEFLDEARQRGIRELRIITGKGNHSKGGVLKRAVRRWLEE-GYQY 59 (83)
T ss_dssp HHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSHHHHHHHHHHHH-THCC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCcHHHHHHHHHHh-hhcc
Confidence 3445667787887776 4566999987 3358888999988 7654
No 343
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=27.52 E-value=1.6e+02 Score=25.05 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHCCCe-EEEEccCccccHHHHHHHHHhcCCCCccee
Q 024820 157 ASLTFYKELKQLGFK-IFLLTGRNEFQRNTTEKNLLFAGYSDWKKL 201 (262)
Q Consensus 157 galell~~Lk~~Gik-I~~vTgR~e~~r~~T~~nL~~~G~~~~~~L 201 (262)
...+.+++++++|++ |++=+.-++.+|.-.++...++|+....-|
T Consensus 76 ~l~~~l~~~~~~g~~~vv~G~i~sd~~~~~~e~~~~~~gl~~~~PL 121 (194)
T cd01994 76 DLKELLRKLKEEGVDAVVFGAILSEYQRTRVERVCERLGLEPLAPL 121 (194)
T ss_pred HHHHHHHHHHHcCCCEEEECccccHHHHHHHHHHHHHcCCEEEecc
Confidence 345566666666776 333344456788888899999998654433
No 344
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=27.43 E-value=2.3e+02 Score=24.81 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=30.2
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCccc----cHHHHHHHHHhcCCCCcceeEeeCC
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNEF----QRNTTEKNLLFAGYSDWKKLFLRGP 206 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e~----~r~~T~~nL~~~G~~~~~~Lilr~~ 206 (262)
+..|..+-..|+++|++|.+++-..+. ..+.....|++.|+. .+.+..+
T Consensus 48 ~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~---~~~~~~P 100 (224)
T PF04244_consen 48 FSAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGID---RLHVMEP 100 (224)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH-------EEEE--
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCC---EEEEECC
Confidence 457889999999999999999998643 356667788888874 4555543
No 345
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=27.21 E-value=3.1e+02 Score=21.48 Aligned_cols=79 Identities=10% Similarity=0.016 Sum_probs=46.1
Q ss_pred HHHHHHHHCCCeEEEEccCcc-----ccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEE
Q 024820 160 TFYKELKQLGFKIFLLTGRNE-----FQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGS 234 (262)
Q Consensus 160 ell~~Lk~~GikI~~vTgR~e-----~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~ 234 (262)
..++.+++...+.+++||-.. ...+...+.|.+.|++. ..+++-... ....+--...+..+.+.|.+-++.
T Consensus 25 ~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~-~~I~~e~~s---~~T~ena~~~~~~~~~~~~~~i~l 100 (150)
T cd06259 25 AAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPA-EAILLEDRS---TNTYENARFSAELLRERGIRSVLL 100 (150)
T ss_pred HHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCH-HHeeecCCC---CCHHHHHHHHHHHHHhcCCCeEEE
Confidence 334444555588888898753 24667788999999975 555554322 111222223334455566666677
Q ss_pred ECCCcccc
Q 024820 235 SGDQWSDL 242 (262)
Q Consensus 235 IGDq~sDl 242 (262)
|-|.+.=-
T Consensus 101 VTs~~H~~ 108 (150)
T cd06259 101 VTSAYHMP 108 (150)
T ss_pred ECCHHHHH
Confidence 77766543
No 346
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=27.20 E-value=64 Score=27.67 Aligned_cols=43 Identities=28% Similarity=0.219 Sum_probs=33.2
Q ss_pred cCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCC
Q 024820 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (262)
Q Consensus 150 ~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~ 196 (262)
+...++|+.+++++++.+.-- =-++|+.. |.++++||++.+..
T Consensus 54 edg~~m~ESlDIV~y~d~~~~-~~~lt~~~---~pai~~wlrkv~~y 96 (215)
T COG2999 54 EDGRAMPESLDIVHYVDELDG-KPLLTGKV---RPAIEAWLRKVNGY 96 (215)
T ss_pred cccccchhhhHHHHHHHHhcC-chhhccCc---CHHHHHHHHHhcch
Confidence 457889999999999987622 34567777 89999999987543
No 347
>PRK02947 hypothetical protein; Provisional
Probab=27.18 E-value=76 Score=27.97 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCcc
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNE 180 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e 180 (262)
-+.+.++++.++++|.+++.+|+...
T Consensus 119 t~~~i~~~~~a~~~g~~vI~iT~~~~ 144 (246)
T PRK02947 119 NPVPIEMALEAKERGAKVIAVTSLAY 144 (246)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCcc
Confidence 46889999999999999999999863
No 348
>PRK10658 putative alpha-glucosidase; Provisional
Probab=27.17 E-value=1.7e+02 Score=29.91 Aligned_cols=43 Identities=26% Similarity=0.258 Sum_probs=29.1
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCC
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGY 195 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~ 195 (262)
..+|.-.+++++|+++|+++++...-.-.+....-+...+.|+
T Consensus 322 ~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy 364 (665)
T PRK10658 322 RTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGY 364 (665)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCe
Confidence 4467788999999999999998876543323233344555565
No 349
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=27.15 E-value=3.7e+02 Score=22.46 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhc
Q 024820 156 PASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFA 193 (262)
Q Consensus 156 pgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~ 193 (262)
.=+.++++.+.++|++|+++-++++. -+...++|++.
T Consensus 35 dl~~~l~~~~~~~~~~vfllG~~~~v-~~~~~~~l~~~ 71 (177)
T TIGR00696 35 DLMEELCQRAGKEKLPIFLYGGKPDV-LQQLKVKLIKE 71 (177)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHH-HHHHHHHHHHH
Confidence 34457788888899999999888754 44556667654
No 350
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=27.08 E-value=2.1e+02 Score=21.46 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=29.6
Q ss_pred HHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeC
Q 024820 160 TFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRG 205 (262)
Q Consensus 160 ell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~ 205 (262)
+....+++.|+++++|+--+ .+...++.+..+++. .++..+
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~---~~~~~~f~~~~~~p~--~ly~D~ 44 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGS---PEGIEKFCELTGFPF--PLYVDP 44 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCC---HHHHHHHHhccCCCC--cEEEeC
Confidence 34667889999999999666 434677777788875 366554
No 351
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=27.04 E-value=1.3e+02 Score=24.61 Aligned_cols=58 Identities=10% Similarity=-0.003 Sum_probs=33.6
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCC
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKP 212 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp 212 (262)
..+--|..-.++.+++.|..+.++--..........+||.++++.. |-+.++-++..|
T Consensus 73 g~l~GGt~lT~~~a~~~~KP~l~i~~~~~~~~~~v~~wl~~~~i~v---LNVAGPReS~~P 130 (145)
T PF12694_consen 73 GELTGGTALTVEFARKHGKPCLHIDLSIPEAAAAVAEWLREHNIRV---LNVAGPRESKAP 130 (145)
T ss_dssp SS--HHHHHHHHHHHHTT--EEEETS-HHHHHHHHHHHHHHTT--E---EEEE---TTT-T
T ss_pred CCCCcHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHHHHCCceE---EEeccCcccCCC
Confidence 3555688888889999999998883333333566789999999853 666665544444
No 352
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=26.82 E-value=1.9e+02 Score=32.11 Aligned_cols=88 Identities=20% Similarity=0.291 Sum_probs=56.3
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhh---cCcc
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVN---EGYR 230 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~---~g~~ 230 (262)
.+.-..=||+.|+..|+++.+.|--. ..-++.+..|..+|| ++||-++.. +.+.|+.|.+ .+-+
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMt-kmLDVLeqFLnyHgy-----lY~RLDg~t-------~vEqRQaLmerFNaD~R 1327 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMT-KMLDVLEQFLNYHGY-----LYVRLDGNT-------SVEQRQALMERFNADRR 1327 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHH-HHHHHHHHHHhhcce-----EEEEecCCc-------cHHHHHHHHHHhcCCCc
Confidence 34444567899999999999999865 235666777777775 566655432 3456666653 3556
Q ss_pred EEEEECCCcccccccc-ccccEEEe
Q 024820 231 IHGSSGDQWSDLLGFA-KAERSFKL 254 (262)
Q Consensus 231 iv~~IGDq~sDl~g~~-~g~r~fkl 254 (262)
|..+|=.+-|.=.|-+ .|..++.+
T Consensus 1328 IfcfILSTrSggvGiNLtgADTVvF 1352 (1958)
T KOG0391|consen 1328 IFCFILSTRSGGVGINLTGADTVVF 1352 (1958)
T ss_pred eEEEEEeccCCccccccccCceEEE
Confidence 7777766666555544 45555554
No 353
>PHA03030 hypothetical protein; Provisional
Probab=26.78 E-value=47 Score=25.65 Aligned_cols=19 Identities=37% Similarity=0.691 Sum_probs=14.8
Q ss_pred chhHHHHHHHHHHHHHhcc
Q 024820 3 CCKFLLVISLHSFLISHAF 21 (262)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (262)
.|.||.||.+|.|++.+--
T Consensus 2 nci~~ili~lfifl~iffY 20 (122)
T PHA03030 2 NCIFLILIFLFIFLFIFFY 20 (122)
T ss_pred ceehHHHHHHHHHHHHHHH
Confidence 4889999988888877543
No 354
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=26.53 E-value=2.9e+02 Score=21.03 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHC---CCeEEEEccCccccHHHHHHHHHhcCCC
Q 024820 156 PASLTFYKELKQL---GFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (262)
Q Consensus 156 pgalell~~Lk~~---GikI~~vTgR~e~~r~~T~~nL~~~G~~ 196 (262)
|...+++..+.+. ++++.+.|+-.-.. ....+.|.++|..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~-~~~l~~l~~~~~~ 102 (166)
T PF04055_consen 60 PDFIELLELLRKIKKRGIRISINTNGTLLD-EELLDELKKLGVD 102 (166)
T ss_dssp CHHHHHHHHHHHCTCTTEEEEEEEESTTHC-HHHHHHHHHTTCS
T ss_pred hhHHHHHHHHHHhhccccceeeeccccchh-HHHHHHHHhcCcc
Confidence 3445555555554 99999999988433 7788899999953
No 355
>smart00463 SMR Small MutS-related domain.
Probab=26.37 E-value=1.2e+02 Score=21.40 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=21.9
Q ss_pred CCChHHHHHHHHHHHCCC--eEEEEccCcc
Q 024820 153 PALPASLTFYKELKQLGF--KIFLLTGRNE 180 (262)
Q Consensus 153 ~~ipgalell~~Lk~~Gi--kI~~vTgR~e 180 (262)
.++.-+.++++.+.+.|. .+-++|||-.
T Consensus 13 eA~~~l~~~l~~~~~~~~~~~~~II~G~G~ 42 (80)
T smart00463 13 EALTALDKFLNNARLKGLEQKLVIITGKGK 42 (80)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEcccC
Confidence 445566788888999996 7889999864
No 356
>PRK12342 hypothetical protein; Provisional
Probab=26.29 E-value=4.7e+02 Score=23.34 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=13.2
Q ss_pred HHHHHHHHHCCCeEEEEccCcc
Q 024820 159 LTFYKELKQLGFKIFLLTGRNE 180 (262)
Q Consensus 159 lell~~Lk~~GikI~~vTgR~e 180 (262)
+|.--+|++.|.+|..+|=-+.
T Consensus 41 lE~AlrLk~~g~~Vtvls~Gp~ 62 (254)
T PRK12342 41 IEAASQLATDGDEIAALTVGGS 62 (254)
T ss_pred HHHHHHHhhcCCEEEEEEeCCC
Confidence 3333345556777777777664
No 357
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=26.21 E-value=1.7e+02 Score=30.17 Aligned_cols=88 Identities=19% Similarity=0.143 Sum_probs=59.6
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC--cc-eeEeeC------------------CCCCC
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD--WK-KLFLRG------------------PSDQG 210 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~--~~-~Lilr~------------------~~~~~ 210 (262)
.||-...-+.++.....|..|-.+||-. +..-.+.=+++|... |- .-.+.. ++..+
T Consensus 491 dpprhdsa~tirral~lGv~Vkmitgdq---laI~keTgrrlgmgtnmypss~llG~~~~~~~~~~~v~elie~adgfAg 567 (942)
T KOG0205|consen 491 DPPRHDSAETIRRALNLGVNVKMITGDQ---LAIAKETGRRLGMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGFAG 567 (942)
T ss_pred CCCccchHHHHHHHHhccceeeeecchH---HHHHHhhhhhhccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCccc
Confidence 5667778889999999999999999976 555556666666642 11 111111 11111
Q ss_pred CCchhhhHHHHHhhhhcCccEEEEECCCcccccc
Q 024820 211 KPATVYKSEKRLELVNEGYRIHGSSGDQWSDLLG 244 (262)
Q Consensus 211 Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~sDl~g 244 (262)
..++.|-+..+.|+..|| ++++.||..+|--+
T Consensus 568 -VfpehKy~iV~~Lq~r~h-i~gmtgdgvndapa 599 (942)
T KOG0205|consen 568 -VFPEHKYEIVKILQERKH-IVGMTGDGVNDAPA 599 (942)
T ss_pred -cCHHHHHHHHHHHhhcCc-eecccCCCcccchh
Confidence 235677788888887665 78999999998754
No 358
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=26.10 E-value=80 Score=28.19 Aligned_cols=83 Identities=17% Similarity=0.136 Sum_probs=46.3
Q ss_pred HHHHHHHHHHCCCeEEEEccCcccc-HHH-HHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEE
Q 024820 158 SLTFYKELKQLGFKIFLLTGRNEFQ-RNT-TEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSS 235 (262)
Q Consensus 158 alell~~Lk~~GikI~~vTgR~e~~-r~~-T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~I 235 (262)
-..+++.+...|+.+.-.|+--..- ... |.+.-+.++-..|.+|-+.+++..--|++.---..-+.|.++||.+.-|+
T Consensus 51 ~~~~~~~i~~~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~ 130 (247)
T PF05690_consen 51 GDNILDYIDRSGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYC 130 (247)
T ss_dssp CHHCCCCTTCCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred CccHHHHhcccCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecC
Confidence 3455666777889998888754332 222 34444556666788888887765555666433334456789999999999
Q ss_pred CCCcc
Q 024820 236 GDQWS 240 (262)
Q Consensus 236 GDq~s 240 (262)
-|.+.
T Consensus 131 ~~D~v 135 (247)
T PF05690_consen 131 TDDPV 135 (247)
T ss_dssp -S-HH
T ss_pred CCCHH
Confidence 88654
No 359
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=25.99 E-value=4.1e+02 Score=26.38 Aligned_cols=98 Identities=20% Similarity=0.253 Sum_probs=55.2
Q ss_pred hHHHH-HHHHHHHCCCeEEEEccCcc-ccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcC---cc
Q 024820 156 PASLT-FYKELKQLGFKIFLLTGRNE-FQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEG---YR 230 (262)
Q Consensus 156 pgale-ll~~Lk~~GikI~~vTgR~e-~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g---~~ 230 (262)
+|+++ +-+.+++.|.+++++|...- ...+...+.|++.|+.. +..++. +.+..|+..... .....+.+.| ..
T Consensus 195 ~g~l~~l~~~l~~~g~k~~iV~d~~v~~~~~~l~~~L~~~g~~v-~~~v~p-~~E~~ksl~~v~-~~~~~l~~~~~~r~D 271 (542)
T PRK14021 195 EGAMNHLPQVLGPKPVKVALIHTQPVQRHSDRARTLLRQGGYEV-SDIVIP-DAEAGKTIEVAN-GIWQRLGNEGFTRSD 271 (542)
T ss_pred CChHHHHHHHHHhcCCeEEEEECccHHHHHHHHHHHHHhCCCce-EEEEeC-CCcccCCHHHHH-HHHHHHHhcCCCCCc
Confidence 34433 33445566778887776542 22455677888899864 333333 333334422222 2222333333 45
Q ss_pred EEEEECC-Ccccccccc-----ccccEEEeCC
Q 024820 231 IHGSSGD-QWSDLLGFA-----KAERSFKLPN 256 (262)
Q Consensus 231 iv~~IGD-q~sDl~g~~-----~g~r~fklPN 256 (262)
.++.||- ...|+.+.- .|.+.+.+|-
T Consensus 272 ~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 272 AIVGLGGGAATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred EEEEEcChHHHHHHHHHHHHHHcCCCEEEeCC
Confidence 6666776 777887654 4888898885
No 360
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=25.98 E-value=66 Score=27.63 Aligned_cols=27 Identities=15% Similarity=-0.070 Sum_probs=20.0
Q ss_pred EEEEECCCccccccccccccEEEeCCC
Q 024820 231 IHGSSGDQWSDLLGFAKAERSFKLPNP 257 (262)
Q Consensus 231 iv~~IGDq~sDl~g~~~g~r~fklPNp 257 (262)
.++.|||+.+|+.........|.+.|.
T Consensus 177 ~~i~~GD~~nD~~ml~~~~~~iav~na 203 (236)
T TIGR02471 177 QILVAGDSGNDEEMLRGLTLGVVVGNH 203 (236)
T ss_pred HEEEEcCCccHHHHHcCCCcEEEEcCC
Confidence 578899999999876644456666554
No 361
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.88 E-value=1.3e+02 Score=30.20 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHCCCeEEEEccCccc
Q 024820 157 ASLTFYKELKQLGFKIFLLTGRNEF 181 (262)
Q Consensus 157 galell~~Lk~~GikI~~vTgR~e~ 181 (262)
.+--+.++++.+|+.++|+||-+|.
T Consensus 30 ~ADv~aRy~Rl~G~~v~fvtGtDeH 54 (558)
T COG0143 30 AADVYARYLRLRGYEVFFLTGTDEH 54 (558)
T ss_pred HHHHHHHHHHhcCCeEEEEeccCCC
Confidence 3445667888999999999999975
No 362
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=25.87 E-value=4e+02 Score=24.25 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=10.5
Q ss_pred hhhhcCccEEEEECCCcc
Q 024820 223 ELVNEGYRIHGSSGDQWS 240 (262)
Q Consensus 223 ~L~~~g~~iv~~IGDq~s 240 (262)
++.++||.|++ +||...
T Consensus 111 ~~~~~Gy~ivi-iG~~~H 127 (281)
T PRK12360 111 EYYNKGYSIII-VGDKNH 127 (281)
T ss_pred HHHhCCCEEEE-EcCCCC
Confidence 34466887644 787544
No 363
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=25.68 E-value=83 Score=28.08 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=24.5
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccCccc
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGRNEF 181 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR~e~ 181 (262)
-.+.+.++++.++++|.+++.+|+....
T Consensus 199 ~t~~~~~~~~~ak~~g~~ii~IT~~~~s 226 (292)
T PRK11337 199 RTSDVIEAVELAKKNGAKIICITNSYHS 226 (292)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4578999999999999999999998743
No 364
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=25.63 E-value=1.9e+02 Score=26.86 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=21.0
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEcc
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTG 177 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTg 177 (262)
..+|...+++++|+++|++++++..
T Consensus 61 ~~FPdp~~mv~~L~~~G~klv~~i~ 85 (332)
T cd06601 61 GGFPNPKEMFDNLHNKGLKCSTNIT 85 (332)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEec
Confidence 4568889999999999999987654
No 365
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=25.58 E-value=1.3e+02 Score=27.45 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.4
Q ss_pred CChHHHHHHHHHHHCCCeEEEEc
Q 024820 154 ALPASLTFYKELKQLGFKIFLLT 176 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vT 176 (262)
.+|...++++.|+++|+++++..
T Consensus 62 ~FPdp~~~i~~l~~~g~k~~~~~ 84 (317)
T cd06600 62 RFPEPKKLIDELHKRNVKLVTIV 84 (317)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEe
Confidence 46788899999999999998664
No 366
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.41 E-value=4.2e+02 Score=23.19 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=27.7
Q ss_pred HHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCC
Q 024820 159 LTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGP 206 (262)
Q Consensus 159 lell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~ 206 (262)
.++++.+.+.++ |.++.+.+...-....+.|.+.|++. .++.++.+
T Consensus 6 ~~~~~~l~~~~v-i~Vvr~~~~~~a~~~~~al~~gGi~~-iEiT~~tp 51 (222)
T PRK07114 6 IAVLTAMKATGM-VPVFYHADVEVAKKVIKACYDGGARV-FEFTNRGD 51 (222)
T ss_pred HHHHHHHHhCCE-EEEEEcCCHHHHHHHHHHHHHCCCCE-EEEeCCCC
Confidence 355566666655 44555555555556666777777765 55666543
No 367
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=25.32 E-value=4.9e+02 Score=24.26 Aligned_cols=79 Identities=22% Similarity=0.184 Sum_probs=43.6
Q ss_pred HHHHHHHHCC-CeEEEEccCccc---cHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEE
Q 024820 160 TFYKELKQLG-FKIFLLTGRNEF---QRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSS 235 (262)
Q Consensus 160 ell~~Lk~~G-ikI~~vTgR~e~---~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~I 235 (262)
++-..+++.| -+++++|++.-. ..+...+.|++.|+.. .++.+-... |..+--......+.+.+...++.|
T Consensus 18 ~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~---~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIav 92 (377)
T cd08176 18 EIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDY---VIYDGVKPN--PTITNVKDGLAVFKKEGCDFIISI 92 (377)
T ss_pred HHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeE---EEeCCCCCC--CCHHHHHHHHHHHHhcCCCEEEEe
Confidence 3445667777 578899987632 3567788999888752 223221111 212212233334445577767777
Q ss_pred CC-Cccccc
Q 024820 236 GD-QWSDLL 243 (262)
Q Consensus 236 GD-q~sDl~ 243 (262)
|- +.-|..
T Consensus 93 GGGS~iD~a 101 (377)
T cd08176 93 GGGSPHDCA 101 (377)
T ss_pred CCcHHHHHH
Confidence 75 554543
No 368
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=25.32 E-value=4.4e+02 Score=24.12 Aligned_cols=85 Identities=20% Similarity=0.229 Sum_probs=45.4
Q ss_pred CCeEEEEccCccc--cHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCc---cEEEEECC-Ccccc
Q 024820 169 GFKIFLLTGRNEF--QRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGY---RIHGSSGD-QWSDL 242 (262)
Q Consensus 169 GikI~~vTgR~e~--~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~---~iv~~IGD-q~sDl 242 (262)
+-+++++|+..-. ..+...+.|++.|+.. ...++. ..+..++ ...-......+.+.+. ..++.||- +..|+
T Consensus 20 ~~~~livtd~~~~~~~~~~v~~~L~~~g~~~-~~~~~~-~~e~~~~-~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ 96 (344)
T TIGR01357 20 PSKLVIITDETVADLYADKLLEALQALGYNV-LKLTVP-DGEESKS-LETVQRLYDQLLEAGLDRSSTIIALGGGVVGDL 96 (344)
T ss_pred CCeEEEEECCchHHHHHHHHHHHHHhcCCce-eEEEeC-CCCCCCC-HHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHH
Confidence 6789999987532 2345567788888854 222333 2222222 1111223334444444 45666665 66687
Q ss_pred cccc-----ccccEEEeCC
Q 024820 243 LGFA-----KAERSFKLPN 256 (262)
Q Consensus 243 ~g~~-----~g~r~fklPN 256 (262)
.+.- .|.+.+.+|-
T Consensus 97 aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 97 AGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHccCCCEEEecC
Confidence 7543 2566666664
No 369
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=25.06 E-value=1.1e+02 Score=27.40 Aligned_cols=51 Identities=12% Similarity=0.213 Sum_probs=36.4
Q ss_pred cCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCC
Q 024820 150 AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGP 206 (262)
Q Consensus 150 ~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~ 206 (262)
...++.||-...=+.|.+.|++.+++|..+... ..+.|+..||.. +++..+
T Consensus 67 sPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k---~kd~l~~~g~GY---Iivk~D 117 (276)
T PF01993_consen 67 SPNAAAPGPTKAREMLSAKGIPCIVISDAPTKK---AKDALEEEGFGY---IIVKAD 117 (276)
T ss_dssp -S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGG---GHHHHHHTT-EE---EEETTS
T ss_pred CCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchh---hHHHHHhcCCcE---EEEecC
Confidence 457888998877778899999999999988543 257899999853 566554
No 370
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=25.02 E-value=1.5e+02 Score=23.74 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=32.0
Q ss_pred CCCChHHHHHHHHHHHCCC-eE-EEEccC---ccccHHHHHHHHHhcCCC
Q 024820 152 APALPASLTFYKELKQLGF-KI-FLLTGR---NEFQRNTTEKNLLFAGYS 196 (262)
Q Consensus 152 a~~ipgalell~~Lk~~Gi-kI-~~vTgR---~e~~r~~T~~nL~~~G~~ 196 (262)
...++.+.++.+.|+++|. .+ +++-|. ++..++..++-|+++|+.
T Consensus 61 t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~ 110 (128)
T cd02072 61 GHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFD 110 (128)
T ss_pred cCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCC
Confidence 3456778888889999886 44 556665 334456677889999985
No 371
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=25.01 E-value=82 Score=27.86 Aligned_cols=29 Identities=17% Similarity=0.066 Sum_probs=24.8
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEccCccc
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTGRNEF 181 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTgR~e~ 181 (262)
.-.+.+.+.++.++++|.+|+.+|+.+..
T Consensus 186 g~~~~~~~~~~~ak~~ga~iI~IT~~~~s 214 (278)
T PRK11557 186 GERRELNLAADEALRVGAKVLAITGFTPN 214 (278)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 34678899999999999999999998743
No 372
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=24.92 E-value=1.2e+02 Score=28.03 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEcc
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTG 177 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTg 177 (262)
..+|...+++++|+++|+++++...
T Consensus 61 ~~FPdp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 61 KKFPDPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEec
Confidence 4567889999999999999987664
No 373
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=24.83 E-value=5e+02 Score=24.03 Aligned_cols=79 Identities=18% Similarity=0.038 Sum_probs=43.6
Q ss_pred HHHHHHCC-CeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECC-Cc
Q 024820 162 YKELKQLG-FKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGD-QW 239 (262)
Q Consensus 162 l~~Lk~~G-ikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGD-q~ 239 (262)
-+.+++.| -+++++|++.-...+...+.|++.|+.. .++.+.. . .|...--......+.+.+...++.||- +.
T Consensus 15 ~~~~~~~g~~~~livtd~~~~~~~~~~~~l~~~~~~~---~~~~~~~-~-~p~~~~v~~~~~~~~~~~~D~IIavGGGs~ 89 (367)
T cd08182 15 PSLLKGLGGKRVLLVTGPRSAIASGLTDILKPLGTLV---VVFDDVQ-P-NPDLEDLAAGIRLLREFGPDAVLAVGGGSV 89 (367)
T ss_pred HHHHHhcCCCeEEEEeCchHHHHHHHHHHHHHcCCeE---EEEcCcC-C-CcCHHHHHHHHHHHHhcCcCEEEEeCCcHH
Confidence 34455666 4799999987555566777888888532 2222211 1 121221222333444557777777776 55
Q ss_pred cccccc
Q 024820 240 SDLLGF 245 (262)
Q Consensus 240 sDl~g~ 245 (262)
-|...+
T Consensus 90 ~D~aK~ 95 (367)
T cd08182 90 LDTAKA 95 (367)
T ss_pred HHHHHH
Confidence 676543
No 374
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=24.80 E-value=2.9e+02 Score=24.02 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=16.5
Q ss_pred HHHHHHHHH---CCCeEEEEccCcc
Q 024820 159 LTFYKELKQ---LGFKIFLLTGRNE 180 (262)
Q Consensus 159 lell~~Lk~---~GikI~~vTgR~e 180 (262)
.++++.+++ ...+|+++|+|.+
T Consensus 59 ~~~~~~iR~~~~~~~PIi~Lta~~~ 83 (229)
T COG0745 59 LELCRRLRAKKGSGPPIIVLTARDD 83 (229)
T ss_pred HHHHHHHHhhcCCCCcEEEEECCCc
Confidence 566667773 5677999999974
No 375
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=24.79 E-value=1.5e+02 Score=22.83 Aligned_cols=74 Identities=14% Similarity=-0.030 Sum_probs=44.1
Q ss_pred HHHHHHHHHCCCeEEEEccCccccHH---HHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEE
Q 024820 159 LTFYKELKQLGFKIFLLTGRNEFQRN---TTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSS 235 (262)
Q Consensus 159 lell~~Lk~~GikI~~vTgR~e~~r~---~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~I 235 (262)
.+++..+.+.+-.++.+|+..+.+.+ ...+.|++.|.+. -.+++.+... + .....+.+.|+.-+...
T Consensus 40 e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~-i~i~~GG~~~--------~-~~~~~~~~~G~d~~~~~ 109 (122)
T cd02071 40 EEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGD-ILVVGGGIIP--------P-EDYELLKEMGVAEIFGP 109 (122)
T ss_pred HHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCC-CEEEEECCCC--------H-HHHHHHHHCCCCEEECC
Confidence 46677777888888888888765433 3345566677753 3455554321 1 22234556677766666
Q ss_pred CCCcccc
Q 024820 236 GDQWSDL 242 (262)
Q Consensus 236 GDq~sDl 242 (262)
|..+.|+
T Consensus 110 ~~~~~~~ 116 (122)
T cd02071 110 GTSIEEI 116 (122)
T ss_pred CCCHHHH
Confidence 6665554
No 376
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=24.73 E-value=1e+02 Score=26.00 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=10.6
Q ss_pred HHHHHHHHCCCeEEEEccCcc
Q 024820 160 TFYKELKQLGFKIFLLTGRNE 180 (262)
Q Consensus 160 ell~~Lk~~GikI~~vTgR~e 180 (262)
.++..++++|++++++.+|-.
T Consensus 109 nll~~a~~~~ip~~LvNarls 129 (186)
T PF04413_consen 109 NLLREAKRRGIPVVLVNARLS 129 (186)
T ss_dssp HHHHH-----S-EEEEEE---
T ss_pred HHHHHHhhcCCCEEEEeeeec
Confidence 567889999999999999974
No 377
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=24.69 E-value=3.3e+02 Score=20.93 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=7.0
Q ss_pred HHHHCCCeEEEEccC
Q 024820 164 ELKQLGFKIFLLTGR 178 (262)
Q Consensus 164 ~Lk~~GikI~~vTgR 178 (262)
.|+..|++++++-..
T Consensus 22 ~l~~~G~~vi~lG~~ 36 (122)
T cd02071 22 ALRDAGFEVIYTGLR 36 (122)
T ss_pred HHHHCCCEEEECCCC
Confidence 344445555444443
No 378
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=24.52 E-value=67 Score=26.88 Aligned_cols=38 Identities=21% Similarity=0.052 Sum_probs=23.1
Q ss_pred HHHHhhhhcCc--cEEEEECCCccccccccccccEEEeCC
Q 024820 219 EKRLELVNEGY--RIHGSSGDQWSDLLGFAKAERSFKLPN 256 (262)
Q Consensus 219 ~~r~~L~~~g~--~iv~~IGDq~sDl~g~~~g~r~fklPN 256 (262)
+.+.-++..|. ..++.|||+.+|+.--......|..-|
T Consensus 190 ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~n 229 (254)
T PF08282_consen 190 AIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGN 229 (254)
T ss_dssp HHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETT
T ss_pred HHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcC
Confidence 33333334454 468899999999976553344555544
No 379
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=24.31 E-value=41 Score=31.49 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=14.4
Q ss_pred CCCceEEEecCCCccC
Q 024820 108 DGKDAWVFDIDETLLS 123 (262)
Q Consensus 108 ~~~~aiIfDIDgTlld 123 (262)
++.++|.||+|-||+.
T Consensus 10 ~~i~~~GFDmDyTLa~ 25 (343)
T TIGR02244 10 EKIQVFGFDMDYTLAQ 25 (343)
T ss_pred ccCCEEEECccccccc
Confidence 4688999999999997
No 380
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=24.25 E-value=1.6e+02 Score=26.05 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=19.8
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEccC
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTGR 178 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTgR 178 (262)
.-...++++++...+.|++=+++|+-
T Consensus 17 ~s~eesl~ml~~A~~qGvt~iVaTsH 42 (254)
T COG4464 17 KSLEESLAMLREAVRQGVTKIVATSH 42 (254)
T ss_pred CcHHHHHHHHHHHHHcCceEEeeccc
Confidence 34456788888888888888888864
No 381
>PRK15482 transcriptional regulator MurR; Provisional
Probab=24.13 E-value=93 Score=27.72 Aligned_cols=30 Identities=7% Similarity=0.076 Sum_probs=25.5
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccc
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEF 181 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~ 181 (262)
..-.+.+.++++.++++|.+++.+|+....
T Consensus 192 sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s 221 (285)
T PRK15482 192 SGSKKEIVLCAEAARKQGATVIAITSLADS 221 (285)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 344688999999999999999999998743
No 382
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=24.12 E-value=4.5e+02 Score=24.48 Aligned_cols=76 Identities=18% Similarity=0.142 Sum_probs=41.1
Q ss_pred HHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEEC-CCccc
Q 024820 163 KELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSG-DQWSD 241 (262)
Q Consensus 163 ~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IG-Dq~sD 241 (262)
+.+++.|-+++++|++.-...+...+.|++.|+.. . ++ .... .|..+.-........+.+...++.|| =+.-|
T Consensus 16 ~~l~~~~~r~livtd~~~~~~~~v~~~L~~~g~~~-~-~~-~~~~---~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D 89 (374)
T cd08183 16 ALAAELGRRVLLVTGASSLRAAWLIEALRAAGIEV-T-HV-VVAG---EPSVELVDAAVAEARNAGCDVVIAIGGGSVID 89 (374)
T ss_pred HHHHHcCCcEEEEECCchHHHHHHHHHHHHcCCeE-E-Ee-cCCC---CcCHHHHHHHHHHHHhcCCCEEEEecCchHHH
Confidence 34455578999999986544556677888888853 2 22 1111 12111111222234445677666666 45556
Q ss_pred ccc
Q 024820 242 LLG 244 (262)
Q Consensus 242 l~g 244 (262)
...
T Consensus 90 ~aK 92 (374)
T cd08183 90 AGK 92 (374)
T ss_pred HHH
Confidence 653
No 383
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=23.77 E-value=1.4e+02 Score=25.05 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhcccccCCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHC-C
Q 024820 91 VSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQL-G 169 (262)
Q Consensus 91 v~~~a~~y~~~~~~~~~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~-G 169 (262)
...||..+.+.++.. ..+...+++|+++.-..+.+ ......+..|+++++++ |
T Consensus 70 a~~qA~~f~~~~~~~-~~~~~~~~lDvE~~~~~~~~-------------------------~~~~~~~~~f~~~v~~~~g 123 (194)
T cd06524 70 PKQQADNFLNTVKLL-GPGDLPPVLDVEWDGRKSSA-------------------------KQIQEGVLEWLDAVEKATG 123 (194)
T ss_pred HHHHHHHHHHHcCCC-CCCCCCeEEEEecCCCCCCH-------------------------HHHHHHHHHHHHHHHHHHC
Confidence 447787777766551 12223457999885332210 01124678888998865 8
Q ss_pred CeEEEEccCc
Q 024820 170 FKIFLLTGRN 179 (262)
Q Consensus 170 ikI~~vTgR~ 179 (262)
+++.+=|++.
T Consensus 124 ~~~~iY~~~~ 133 (194)
T cd06524 124 VKPIIYTNPS 133 (194)
T ss_pred CCeEEEEcHH
Confidence 9999988876
No 384
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=23.72 E-value=1.3e+02 Score=21.34 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHH-HCCCeEEEEccCccccHHHHHHHHHhcCCC
Q 024820 154 ALPASLTFYKELK-QLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (262)
Q Consensus 154 ~ipgalell~~Lk-~~GikI~~vTgR~e~~r~~T~~nL~~~G~~ 196 (262)
.+|...+++++++ ..++.+++||.- ..++...+.+++.+++
T Consensus 19 ~~~~l~~l~~~~~~~~~v~~v~Vs~d--~~~~~~~~~~~~~~~~ 60 (95)
T PF13905_consen 19 ELPKLKELYKKYKKKDDVEFVFVSLD--EDEEEWKKFLKKNNFP 60 (95)
T ss_dssp HHHHHHHHHHHHTTTTTEEEEEEE-S--SSHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEEeC--CCHHHHHHHHHhcCCC
Confidence 4677888888888 678999999885 3477888899998775
No 385
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=23.32 E-value=3.9e+02 Score=23.36 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHCCCeEEEEcc
Q 024820 157 ASLTFYKELKQLGFKIFLLTG 177 (262)
Q Consensus 157 galell~~Lk~~GikI~~vTg 177 (262)
.+.+.+.+++++|++++++++
T Consensus 25 ~~~~~i~~~~~~~~~viiV~s 45 (251)
T cd04242 25 SLVEQIAELRNQGKEVILVSS 45 (251)
T ss_pred HHHHHHHHHHHCCCeEEEEec
Confidence 445667778889999999975
No 386
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=23.28 E-value=1e+02 Score=23.91 Aligned_cols=25 Identities=12% Similarity=0.196 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHCCCeEEEEccCccc
Q 024820 157 ASLTFYKELKQLGFKIFLLTGRNEF 181 (262)
Q Consensus 157 galell~~Lk~~GikI~~vTgR~e~ 181 (262)
-+.++.+.|.++|+++.++|.+...
T Consensus 17 ~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 17 VVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 3578899999999999999888744
No 387
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=23.25 E-value=2.1e+02 Score=26.39 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=20.0
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEcc
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTG 177 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTg 177 (262)
..+|...++++.|+++|+++.+...
T Consensus 61 ~~fPdp~~m~~~l~~~g~~~~~~~~ 85 (339)
T cd06604 61 ERFPDPKELIKELHEQGFKVVTIID 85 (339)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEEe
Confidence 3567788999999999999986543
No 388
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=23.07 E-value=6.1e+02 Score=23.67 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=44.0
Q ss_pred HHHHHHHHCC-CeEEEEccCccc---cHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEE
Q 024820 160 TFYKELKQLG-FKIFLLTGRNEF---QRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSS 235 (262)
Q Consensus 160 ell~~Lk~~G-ikI~~vTgR~e~---~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~I 235 (262)
++-+.+++.| -+++++|++.-. ..+...+.|++.|+.. .++ . +....|....-......+.+.+...++.|
T Consensus 20 ~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~--~~~-~--~v~~~p~~~~v~~~~~~~~~~~~D~IIai 94 (382)
T PRK10624 20 ALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAY--EIY-D--GVKPNPTIEVVKEGVEVFKASGADYLIAI 94 (382)
T ss_pred HHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeE--EEe-C--CCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 3345566667 588899997632 3456678899999852 222 2 11111222222233344445677877777
Q ss_pred CC-Cccccc
Q 024820 236 GD-QWSDLL 243 (262)
Q Consensus 236 GD-q~sDl~ 243 (262)
|- +.-|+.
T Consensus 95 GGGS~iD~a 103 (382)
T PRK10624 95 GGGSPQDTC 103 (382)
T ss_pred CChHHHHHH
Confidence 75 555654
No 389
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=22.77 E-value=2e+02 Score=22.07 Aligned_cols=39 Identities=18% Similarity=0.063 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCC
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYS 196 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~ 196 (262)
+|...++.+.+++.|+.++.|+.-+ .....+..++.+++
T Consensus 43 ~~~l~~~~~~~~~~~v~vv~V~~~~---~~~~~~~~~~~~~~ 81 (149)
T cd02970 43 LRALSKLLPELDALGVELVAVGPES---PEKLEAFDKGKFLP 81 (149)
T ss_pred HHHHHHHHHHHHhcCeEEEEEeCCC---HHHHHHHHHhcCCC
Confidence 4667778888888999999998655 23334567777775
No 390
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=22.66 E-value=1.2e+02 Score=30.02 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~ 197 (262)
.+++.++.+.|.+.|++|+ .|+- |.+.|+..|++.
T Consensus 10 K~~iv~lAk~L~~lGfeIi-ATgG-------Tak~L~e~GI~v 44 (511)
T TIGR00355 10 KTGIVEFAQGLVERGVELL-STGG-------TAKLLAEAGVPV 44 (511)
T ss_pred cccHHHHHHHHHHCCCEEE-Eech-------HHHHHHHCCCeE
Confidence 5789999999999999995 5553 578999999964
No 391
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=22.65 E-value=1.5e+02 Score=23.07 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=29.9
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~ 197 (262)
+|...++.+..+++|+.++.++..+... ..+.+++.+++.
T Consensus 48 ~p~l~~l~~~~~~~~v~~v~v~~~~~~~---~~~~~~~~~~~~ 87 (146)
T PF08534_consen 48 LPYLNELQEKYKDKGVDVVGVSSDDDPP---VREFLKKYGINF 87 (146)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEESSSHH---HHHHHHHTTTTS
T ss_pred hhhHHhhhhhhccCceEEEEecccCCHH---HHHHHHhhCCCc
Confidence 4566777777788999999888877433 778888877763
No 392
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=22.61 E-value=5.3e+02 Score=24.01 Aligned_cols=77 Identities=13% Similarity=0.027 Sum_probs=42.3
Q ss_pred HHHHHHHHHCCCeEEEEccCc------cccHH----HHHHHHHhcCCCCcceeEeeCCCC----CCCCchhhhHHHHHhh
Q 024820 159 LTFYKELKQLGFKIFLLTGRN------EFQRN----TTEKNLLFAGYSDWKKLFLRGPSD----QGKPATVYKSEKRLEL 224 (262)
Q Consensus 159 lell~~Lk~~GikI~~vTgR~------e~~r~----~T~~nL~~~G~~~~~~Lilr~~~~----~~Kp~~~~Ks~~r~~L 224 (262)
.+++...+++|++|.+..+-+ +..|+ ..++.+++.||.+ .++-.-.... .......+-.+.|.+|
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~~~~l~~~~~R~~fi~siv~~~~~~gfDG-IdIDwE~p~~~~~~d~~~~t~llkelr~~l 145 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVPLEQISNPTYRTQWIQQKVELAKSQFMDG-INIDIEQPITKGSPEYYALTELVKETTKAF 145 (358)
T ss_pred HHHHHHHHHcCCEEEEECccCHHHcCCHHHHHHHHHHHHHHHHHhCCCe-EEEcccCCCCCCcchHHHHHHHHHHHHHHH
Confidence 488889999999999876422 22343 4456677889876 1221111111 0111123445667777
Q ss_pred hhc--CccEEEEEC
Q 024820 225 VNE--GYRIHGSSG 236 (262)
Q Consensus 225 ~~~--g~~iv~~IG 236 (262)
.+. ++.+.+.+.
T Consensus 146 ~~~~~~~~Lsvav~ 159 (358)
T cd02875 146 KKENPGYQISFDVA 159 (358)
T ss_pred hhcCCCcEEEEEEe
Confidence 664 555555443
No 393
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=22.49 E-value=74 Score=29.77 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccC
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGR 178 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR 178 (262)
+.-..+++++|+++|+++.|||=-
T Consensus 185 LHFt~~LL~kLk~kGv~~afvTLH 208 (348)
T COG0809 185 LHFTEELLEKLKAKGVEIAFVTLH 208 (348)
T ss_pred CCCCHHHHHHHHHCCceEEEEEEE
Confidence 555679999999999999999854
No 394
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=22.42 E-value=6.2e+02 Score=23.58 Aligned_cols=78 Identities=15% Similarity=0.127 Sum_probs=42.8
Q ss_pred HHHHHHHCC-CeEEEEccCccc---cHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEEC
Q 024820 161 FYKELKQLG-FKIFLLTGRNEF---QRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSG 236 (262)
Q Consensus 161 ll~~Lk~~G-ikI~~vTgR~e~---~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IG 236 (262)
+-+.+++.| -++.++|++.-. ..+...+.|++.|+.. . ++.+ ... .|....-......+.+.+...++.||
T Consensus 20 l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~--~-~~~~-v~~-~p~~~~v~~~~~~~~~~~~D~IiaiG 94 (379)
T TIGR02638 20 IVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAY--E-LFDE-VKP-NPTITVVKAGVAAFKASGADYLIAIG 94 (379)
T ss_pred HHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeE--E-EECC-CCC-CcCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 334566667 589999997632 3456778888888752 2 2221 111 12122112222334455677666677
Q ss_pred C-Cccccc
Q 024820 237 D-QWSDLL 243 (262)
Q Consensus 237 D-q~sDl~ 243 (262)
- +.-|..
T Consensus 95 GGSviD~a 102 (379)
T TIGR02638 95 GGSPIDTA 102 (379)
T ss_pred ChHHHHHH
Confidence 5 555665
No 395
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=22.40 E-value=1e+02 Score=26.89 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHHHCCCeEEEEccCc
Q 024820 154 ALPASLTFYKELKQLGFKIFLLTGRN 179 (262)
Q Consensus 154 ~ipgalell~~Lk~~GikI~~vTgR~ 179 (262)
-.+.+.+.++.++++|.+++.+|+..
T Consensus 59 ~t~~~~~~~~~a~~~g~~ii~iT~~~ 84 (268)
T TIGR00393 59 ESLELLNLIPHLKRLSHKIIAFTGSP 84 (268)
T ss_pred CCHHHHHHHHHHHHcCCcEEEEECCC
Confidence 44688999999999999999999975
No 396
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=22.33 E-value=1.1e+02 Score=24.01 Aligned_cols=47 Identities=13% Similarity=0.083 Sum_probs=29.7
Q ss_pred ccCcccHHHHHhhhcCCcccccHHHHHHHHHHH---HhhcccccCCCCceEEEe
Q 024820 66 SVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKH---AKSANVSAGDGKDAWVFD 116 (262)
Q Consensus 66 ~vP~~C~~~v~~y~~~~~Y~~d~~~v~~~a~~y---~~~~~~~~~~~~~aiIfD 116 (262)
+-|.+....+++.+.+..++ +...-+..|+.- |-++-. .+.+|||||
T Consensus 42 adp~qA~~~~~~~l~sp~~~-~~q~~l~~Ayqgv~~Aw~lGi---~k~PAVV~D 91 (113)
T TIGR03757 42 ADPQQAAAQARQRLQSPDWA-RLQRRLAQAYQGVADAWQLGV---TKIPAVVVD 91 (113)
T ss_pred CCHHHHHHHHHHHHcCccHH-HHHHHHHHHHHHHHHHHHcCC---ccCCEEEEc
Confidence 55777778888988887774 333333344433 223333 478999999
No 397
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.33 E-value=1.6e+02 Score=24.85 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=18.4
Q ss_pred HHHHHHHHHCCCeEEEEccCccccHHHHHHHHHh
Q 024820 159 LTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLF 192 (262)
Q Consensus 159 lell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~ 192 (262)
.++.+.|.++|++++++..|.+...+.+.+.++.
T Consensus 18 ~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~ 51 (250)
T PRK08063 18 KAIALRLAEEGYDIAVNYARSRKAAEETAEEIEA 51 (250)
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 4556666677777766555554333333344443
No 398
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=22.25 E-value=3.1e+02 Score=27.98 Aligned_cols=127 Identities=20% Similarity=0.144 Sum_probs=63.3
Q ss_pred cCCcccccHHHHHHHHHHHHhhccc---ccCCCCceEEEecCCCccCChh--HHHH--hccCCcCC---C-HHHH--HHH
Q 024820 80 TGEHYLSDSEIVSGYSLKHAKSANV---SAGDGKDAWVFDIDETLLSNLP--YYAA--HGFGSEIF---N-EDAF--DEW 146 (262)
Q Consensus 80 ~~~~Y~~d~~~v~~~a~~y~~~~~~---~~~~~~~aiIfDIDgTlldn~~--y~~~--~~~~~~~~---~-~~~~--~~w 146 (262)
.+..|..+...+...+....+.+.. ....++...+.|+|=|++.+.- ...+ ..+....+ . ...| +..
T Consensus 113 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l~e~~~~l~~~~~~~~sn~dl~~~~~~ 192 (635)
T KOG0323|consen 113 RSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDLSETEKYLKEEAESVESNKDLFRFNPL 192 (635)
T ss_pred cchhcccchhhhhhhhhhhhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchhhhhhhhcccccccccccccceeeccc
Confidence 3445655555555666555543311 1133445899999999997522 1111 01111111 0 0000 000
Q ss_pred HH--hcCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCC
Q 024820 147 VD--LAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPS 207 (262)
Q Consensus 147 v~--~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~ 207 (262)
.. .--.+.-|++.+|++++.+. +.+.+-|=-+..+.....+.|.=-|--.-++++-|.++
T Consensus 193 ~~~~~~~vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~ 254 (635)
T KOG0323|consen 193 GHDTEYLVKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDES 254 (635)
T ss_pred CCCceEEEEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCC
Confidence 00 01246779999999999977 88887776662223333333333332222456666554
No 399
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=22.12 E-value=75 Score=27.53 Aligned_cols=38 Identities=16% Similarity=0.007 Sum_probs=22.6
Q ss_pred HHHHhhhhcCc--cEEEEECCCccccccccccccEEEeCC
Q 024820 219 EKRLELVNEGY--RIHGSSGDQWSDLLGFAKAERSFKLPN 256 (262)
Q Consensus 219 ~~r~~L~~~g~--~iv~~IGDq~sDl~g~~~g~r~fklPN 256 (262)
+.+.-++..|. ..++.|||+.+|+.........+...|
T Consensus 192 ~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~n 231 (256)
T TIGR00099 192 ALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGN 231 (256)
T ss_pred HHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEecC
Confidence 33333334443 358999999999987663333444434
No 400
>PLN02834 3-dehydroquinate synthase
Probab=22.10 E-value=5.2e+02 Score=24.92 Aligned_cols=87 Identities=14% Similarity=0.130 Sum_probs=49.3
Q ss_pred CCCeEEEEccCccc--cHHHHHHHHHhcCCCC-cceeEeeCCCCCCCCchhhhHHHHHhhhhcCcc---EEEEECC-Ccc
Q 024820 168 LGFKIFLLTGRNEF--QRNTTEKNLLFAGYSD-WKKLFLRGPSDQGKPATVYKSEKRLELVNEGYR---IHGSSGD-QWS 240 (262)
Q Consensus 168 ~GikI~~vTgR~e~--~r~~T~~nL~~~G~~~-~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~---iv~~IGD-q~s 240 (262)
.|-+++++|++.-. ..+...+.|++.|+.. .+..++. +++..|+ ...-......+.+.|.. .++.||- ...
T Consensus 99 ~g~rvlIVtD~~v~~~~~~~v~~~L~~~g~~~~v~~~v~~-~gE~~ks-l~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~ 176 (433)
T PLN02834 99 HGKRVLVVTNETVAPLYLEKVVEALTAKGPELTVESVILP-DGEKYKD-METLMKVFDKALESRLDRRCTFVALGGGVIG 176 (433)
T ss_pred CCCEEEEEECccHHHHHHHHHHHHHHhcCCceEEEEEEec-CCcCCCC-HHHHHHHHHHHHhcCCCcCcEEEEECChHHH
Confidence 46889999987632 3455667788888853 1223333 3333343 22222233344444544 5666765 777
Q ss_pred cccccc-----ccccEEEeCC
Q 024820 241 DLLGFA-----KAERSFKLPN 256 (262)
Q Consensus 241 Dl~g~~-----~g~r~fklPN 256 (262)
|+.+.- .|.+.+.+|-
T Consensus 177 D~ak~~A~~y~rgiplI~VPT 197 (433)
T PLN02834 177 DMCGFAAASYQRGVNFVQIPT 197 (433)
T ss_pred HHHHHHHHHhcCCCCEEEECC
Confidence 888642 4777777774
No 401
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=21.83 E-value=1.8e+02 Score=26.64 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=14.0
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEccCc
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTGRN 179 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTgR~ 179 (262)
|-..| ..+.+.|.+.|+++.+++...
T Consensus 156 P~~~G-~~~a~~L~~~GI~vtlI~Dsa 181 (310)
T PRK08535 156 PRNQG-HITAKELAEYGIPVTLIVDSA 181 (310)
T ss_pred chhhH-HHHHHHHHHCCCCEEEEehhH
Confidence 33344 555555666666666655543
No 402
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=21.68 E-value=6.5e+02 Score=23.42 Aligned_cols=78 Identities=19% Similarity=0.101 Sum_probs=42.2
Q ss_pred HHHHHHHCCCeEEEEccCcc----ccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEEC
Q 024820 161 FYKELKQLGFKIFLLTGRNE----FQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSG 236 (262)
Q Consensus 161 ll~~Lk~~GikI~~vTgR~e----~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IG 236 (262)
+-+.+++.|-+++++|++.- ...+...+.|++.|+.. .++.+-. +.|...--......+.+.+...++.||
T Consensus 17 l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~---~~~~~v~--~~p~~~~v~~~~~~~~~~~~D~IiavG 91 (380)
T cd08185 17 LGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEV---VVFDKVE--PNPTTTTVMEGAALAREEGCDFVVGLG 91 (380)
T ss_pred HHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeE---EEeCCcc--CCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 33455666789999998753 12356778888888853 1222211 112111111222334455677677677
Q ss_pred C-Cccccc
Q 024820 237 D-QWSDLL 243 (262)
Q Consensus 237 D-q~sDl~ 243 (262)
- +.-|..
T Consensus 92 GGS~iD~a 99 (380)
T cd08185 92 GGSSMDTA 99 (380)
T ss_pred CccHHHHH
Confidence 5 555654
No 403
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=21.68 E-value=2e+02 Score=21.04 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=17.5
Q ss_pred CCceEEEecCCCccCChhHHH
Q 024820 109 GKDAWVFDIDETLLSNLPYYA 129 (262)
Q Consensus 109 ~~~aiIfDIDgTlldn~~y~~ 129 (262)
..-.++++=|||.+++..|..
T Consensus 39 ~~~~lvL~eDGT~VddEeyF~ 59 (78)
T PF02017_consen 39 EPVRLVLEEDGTEVDDEEYFQ 59 (78)
T ss_dssp STCEEEETTTTCBESSCHHHC
T ss_pred cCcEEEEeCCCcEEccHHHHh
Confidence 455799999999999988764
No 404
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=21.64 E-value=3.4e+02 Score=21.33 Aligned_cols=70 Identities=10% Similarity=0.062 Sum_probs=27.2
Q ss_pred HCCCeEEEEccCcc-----ccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECCCcc
Q 024820 167 QLGFKIFLLTGRNE-----FQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGDQWS 240 (262)
Q Consensus 167 ~~GikI~~vTgR~e-----~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~s 240 (262)
+.-.+.+++||... ...+...+.|.+.|++. ..+++-+. +....+--...+.-+.+.|.+-++.|-+...
T Consensus 35 ~g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~-~~I~~e~~---s~~T~ena~~~~~~~~~~~~~~iilVT~~~H 109 (155)
T PF02698_consen 35 AGYAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPE-ERIILEPK---STNTYENARFSKRLLKERGWQSIILVTSPYH 109 (155)
T ss_dssp -HHT--EEEE--SSTTHTS-HHHHHHHHHHHT---G-GGEEEE-------SHHHHHHHHHHHHHT-SSS-EEEE--CCC
T ss_pred cCCCCeEEECCCCCCCCCCCHHHHHHHHHHhcccch-heeEccCC---CCCHHHHHHHHHHHHHhhcCCeEEEECCHHH
Confidence 33345677787332 12456667788889986 56665432 2222221122233444556655556665443
No 405
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=21.61 E-value=3e+02 Score=27.30 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC
Q 024820 157 ASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 157 galell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~ 197 (262)
...++.++++++|+++.+.--++ ...+.|++.|+..
T Consensus 514 ~L~~l~~~l~~~g~~l~l~~~~~-----~v~~~l~~~gl~~ 549 (563)
T TIGR00815 514 ALEELRKELKARGIQLLLANPNK-----AVRSTLKRGGLVE 549 (563)
T ss_pred HHHHHHHHHHHcCCEEEEecCCh-----HHHHHHHHCCchh
Confidence 45788899999999999887655 5668888889854
No 406
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=21.60 E-value=1e+02 Score=27.94 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=24.6
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEccCcc
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTGRNE 180 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTgR~e 180 (262)
.-.+.+.+.++.++++|.+++.+|+.+.
T Consensus 105 G~t~~~~~~~~~ak~~g~~vi~iT~~~~ 132 (326)
T PRK10892 105 GESSEILALIPVLKRLHVPLICITGRPE 132 (326)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 3458899999999999999999999863
No 407
>COG2988 Succinylglutamate desuccinylase [Amino acid transport and metabolism]
Probab=21.54 E-value=6.5e+02 Score=23.30 Aligned_cols=127 Identities=16% Similarity=0.136 Sum_probs=74.9
Q ss_pred CcCcceeEeeeeecCcccccccCcccHHHHHhhh---cCCcccccHH---HHHHHHHHHHhhcccccCCCCceEEEecCC
Q 024820 46 ELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYM---TGEHYLSDSE---IVSGYSLKHAKSANVSAGDGKDAWVFDIDE 119 (262)
Q Consensus 46 ~~~c~sw~~~ve~nn~~~~~~vP~~C~~~v~~y~---~~~~Y~~d~~---~v~~~a~~y~~~~~~~~~~~~~aiIfDIDg 119 (262)
.....+||+.+-+.|-+..+.= ++|+.+-| =+|+|+.-+. ....+-..-.+.+-.. ++..--|++|+-=
T Consensus 73 g~~p~a~r~L~ilgNP~Ai~~g----kRYieqDlNR~F~gr~q~~~~ne~~ra~eler~~q~ff~~-~~~~vr~h~DLHt 147 (324)
T COG2988 73 GQLPLAWRCLVILGNPPAIAAG----KRYIEQDLNRMFGGRPQSFSENETLRAYELERALQDFFQQ-GKESVRWHLDLHT 147 (324)
T ss_pred cccCcceeEEEEecCcHHHHhc----hHHHhhhHHHHhCCCcccCCCCchhhhHHHHHHHHHHHhc-CCCcceEEEEhhh
Confidence 4557799999999998775333 55655543 3677765431 1111111112222222 3344468999877
Q ss_pred CccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeEEEEccCcccc-HHHHHHHHHhcCC
Q 024820 120 TLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKIFLLTGRNEFQ-RNTTEKNLLFAGY 195 (262)
Q Consensus 120 Tlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~-r~~T~~nL~~~G~ 195 (262)
|+--+..+ .|+..+ -+-.|-..+++.+|.+.|..+.++...+++. --.+-+.|.++|+
T Consensus 148 airgs~h~----~f~~~P--------------~~~~~~~~~l~a~L~~a~~ea~vl~~~Pg~tf~~~ss~~l~ala~ 206 (324)
T COG2988 148 AIRGSGHP----QFGVLP--------------QPDRPWSLKLLAWLSAAGLEALVLHTSPGGTFSHFSSEHLGALAC 206 (324)
T ss_pred hhhccCCc----ceeeCC--------------CCCchhHHHHHHHHHhCCcceEEEEcCCCCCchhhchhhhhheee
Confidence 66554322 132211 1225678999999999999999999998753 3334455655655
No 408
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=21.49 E-value=2.4e+02 Score=26.77 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=28.4
Q ss_pred CCCChHHHHHHHHHHHCCCeEEEEccCccccH---HHHHHHHHhcCC
Q 024820 152 APALPASLTFYKELKQLGFKIFLLTGRNEFQR---NTTEKNLLFAGY 195 (262)
Q Consensus 152 a~~ipgalell~~Lk~~GikI~~vTgR~e~~r---~~T~~nL~~~G~ 195 (262)
...+|+..++++.|+++|+++++...-.-... ...-+.+.+.|+
T Consensus 79 ~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~~~ 125 (441)
T PF01055_consen 79 PERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEKGY 125 (441)
T ss_dssp TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHHTT-
T ss_pred cccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhhcCc
Confidence 45678999999999999999986654332211 235566666666
No 409
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=21.40 E-value=1.6e+02 Score=27.71 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=25.5
Q ss_pred CCCChHHHHHHHHHHHCC--CeEEEEccCccc
Q 024820 152 APALPASLTFYKELKQLG--FKIFLLTGRNEF 181 (262)
Q Consensus 152 a~~ipgalell~~Lk~~G--ikI~~vTgR~e~ 181 (262)
.-.+=++.+++++|+++| .+|+++||.+..
T Consensus 47 ~N~if~avkiydeL~~~GedveVA~VsG~~~~ 78 (344)
T PF04123_consen 47 VNAIFGAVKIYDELKAEGEDVEVAVVSGSPDV 78 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEECCCCC
Confidence 445778999999999998 889999998863
No 410
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=21.31 E-value=1.1e+02 Score=27.64 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=24.2
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEccCcc
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTGRNE 180 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTgR~e 180 (262)
.--+.+.+.++.++++|.+++.+|+...
T Consensus 100 G~t~~~~~~~~~ak~~g~~vI~iT~~~~ 127 (321)
T PRK11543 100 GGAKELDLIIPRLEDKSIALLAMTGKPT 127 (321)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 3457889999999999999999999764
No 411
>PRK04531 acetylglutamate kinase; Provisional
Probab=21.22 E-value=3.4e+02 Score=25.93 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=50.2
Q ss_pred HHHHHHHhhcccccCCCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHCCCeE
Q 024820 93 GYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDLAKAPALPASLTFYKELKQLGFKI 172 (262)
Q Consensus 93 ~~a~~y~~~~~~~~~~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~~~a~~ipgalell~~Lk~~GikI 172 (262)
.++..|.+.+... ...+.+|+=|+|-++... ++...+-+..|++.|.++
T Consensus 21 ~e~~~~l~~F~~~--~~~~~~VIKiGG~~l~~~-----------------------------~~~l~~dla~L~~~G~~~ 69 (398)
T PRK04531 21 KEISQYLKRFSQL--DAERFAVIKVGGAVLRDD-----------------------------LEALASSLSFLQEVGLTP 69 (398)
T ss_pred hhhHHHHHHHhCc--CCCcEEEEEEChHHhhcC-----------------------------HHHHHHHHHHHHHCCCcE
Confidence 5777888777653 345778888999777531 134556667788899999
Q ss_pred EEEccCccccHHHHHHHHHhcCCCC
Q 024820 173 FLLTGRNEFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 173 ~~vTgR~e~~r~~T~~nL~~~G~~~ 197 (262)
++|=|-. ....+.|.+.|++.
T Consensus 70 VlVHGgg----pqI~~~l~~~gie~ 90 (398)
T PRK04531 70 IVVHGAG----PQLDAELDAAGIEK 90 (398)
T ss_pred EEEECCC----HHHHHHHHHcCCCc
Confidence 9998864 34458889999975
No 412
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=21.19 E-value=1.4e+02 Score=29.66 Aligned_cols=35 Identities=37% Similarity=0.397 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC
Q 024820 155 LPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 155 ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~ 197 (262)
.+++.++.+.|.+.|++|+ .|+ .|.+.|++.|++.
T Consensus 14 K~~iv~lAk~L~~lGfeI~-AT~-------GTak~L~e~GI~v 48 (513)
T PRK00881 14 KTGIVEFAKALVELGVEIL-STG-------GTAKLLAEAGIPV 48 (513)
T ss_pred cccHHHHHHHHHHCCCEEE-Ecc-------hHHHHHHHCCCee
Confidence 5789999999999999995 554 3678999999964
No 413
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=21.10 E-value=1.7e+02 Score=23.67 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=47.5
Q ss_pred CCCceEEEecCCCccCChhHHHHhccCCcCCCHHHHHHHHHh-cCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHH
Q 024820 108 DGKDAWVFDIDETLLSNLPYYAAHGFGSEIFNEDAFDEWVDL-AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTT 186 (262)
Q Consensus 108 ~~~~aiIfDIDgTlldn~~y~~~~~~~~~~~~~~~~~~wv~~-~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T 186 (262)
..++++.||+|=|++--.-- ....+.-.+|-. +.-.. .+.--++.+...|..|+++|++++.+|.-... +..
T Consensus 3 ~~p~~~~fdldytiwP~~vd-thl~~pfkP~k~----~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap--~iA 75 (144)
T KOG4549|consen 3 EKPEAMQFDLDYTIWPRLVD-THLDYPFKPFKC----ECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAP--QIA 75 (144)
T ss_pred CCCceeEEeccceeeeEEEE-eccccccccccc----CcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCH--HHH
Confidence 36788999999888742100 000000011100 00011 23456788999999999999999999987743 333
Q ss_pred HHHHHhcCCC
Q 024820 187 EKNLLFAGYS 196 (262)
Q Consensus 187 ~~nL~~~G~~ 196 (262)
.+.|+.+..+
T Consensus 76 ~q~L~~fkvk 85 (144)
T KOG4549|consen 76 SQGLETFKVK 85 (144)
T ss_pred HHHHHHhccC
Confidence 4555555554
No 414
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=21.02 E-value=6.2e+02 Score=22.80 Aligned_cols=67 Identities=9% Similarity=-0.033 Sum_probs=34.9
Q ss_pred CCCeEEEEccCccccHHHHHHHHHhc--CCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEECCCcc
Q 024820 168 LGFKIFLLTGRNEFQRNTTEKNLLFA--GYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSSGDQWS 240 (262)
Q Consensus 168 ~GikI~~vTgR~e~~r~~T~~nL~~~--G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~IGDq~s 240 (262)
.++.+.++++-..-+.+..++...+. .|..-+-+++.+....+ .....|+.|.+.|. .++.|||.+.
T Consensus 30 edI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~P-----GP~~ARE~l~~~~i-P~IvI~D~p~ 98 (277)
T PRK00994 30 EDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAP-----GPKKAREILKAAGI-PCIVIGDAPG 98 (277)
T ss_pred cCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCC-----CchHHHHHHHhcCC-CEEEEcCCCc
Confidence 38888888877644443333332222 23221333433322111 22456677776666 4667888775
No 415
>PRK10976 putative hydrolase; Provisional
Probab=20.83 E-value=74 Score=27.74 Aligned_cols=28 Identities=18% Similarity=0.046 Sum_probs=18.8
Q ss_pred HHHHhhhhcCcc--EEEEECCCcccccccc
Q 024820 219 EKRLELVNEGYR--IHGSSGDQWSDLLGFA 246 (262)
Q Consensus 219 ~~r~~L~~~g~~--iv~~IGDq~sDl~g~~ 246 (262)
+.++-++..|.. .++.|||+.||+.--.
T Consensus 194 al~~l~~~lgi~~~~viafGD~~NDi~Ml~ 223 (266)
T PRK10976 194 ALEAVAKKLGYSLKDCIAFGDGMNDAEMLS 223 (266)
T ss_pred HHHHHHHHcCCCHHHeEEEcCCcccHHHHH
Confidence 444444445654 4899999999997544
No 416
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=20.81 E-value=2e+02 Score=26.27 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=13.7
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEccC
Q 024820 153 PALPASLTFYKELKQLGFKIFLLTGR 178 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vTgR 178 (262)
|...| ..+.+.|.+.|+++.+++..
T Consensus 151 P~~~G-~~~a~~L~~~gI~vtlI~Ds 175 (301)
T TIGR00511 151 PRKQG-HITAKELRDYGIPVTLIVDS 175 (301)
T ss_pred CcchH-HHHHHHHHHCCCCEEEEehh
Confidence 33444 55555555666666655554
No 417
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=20.75 E-value=2.2e+02 Score=21.89 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.0
Q ss_pred HHHHHHHHHHCCCeEEEEccCcc
Q 024820 158 SLTFYKELKQLGFKIFLLTGRNE 180 (262)
Q Consensus 158 alell~~Lk~~GikI~~vTgR~e 180 (262)
+.++++..++.|.+|.++|+.++
T Consensus 71 i~~l~~~a~~~g~~v~iis~~~e 93 (113)
T PF03465_consen 71 IEELIELAEQSGAKVEIISSEHE 93 (113)
T ss_dssp HHHHHHHHHHTTSEEEEE-TTSH
T ss_pred HHHHHHHHHHcCCEEEEEcCCCc
Confidence 78899999999999999999973
No 418
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=20.63 E-value=3.3e+02 Score=25.67 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=37.1
Q ss_pred CHHHHHHHHHh--------cCCCCChHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCC
Q 024820 139 NEDAFDEWVDL--------AKAPALPASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSD 197 (262)
Q Consensus 139 ~~~~~~~wv~~--------~~a~~ipgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~ 197 (262)
+.+.+.+|.+. .-+|-+|++.+++++|+++|+.|.+==+.. ..+...+. .++|...
T Consensus 152 ~~~~~~~~~~~~~~~i~~vTlAPE~~~~~~~i~~l~~~gi~vs~GHs~A--~~~~~~~a-~~~Ga~~ 215 (380)
T TIGR00221 152 DVELFKKFLCEAGGVITKVTLAPEEDQHFELIRHLKDAGIIVSAGHTNA--TYELAKAA-FKAGATH 215 (380)
T ss_pred CHHHHHHHHHhcCCCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCCCC--CHHHHHHH-HHcCCCe
Confidence 45677888764 227889999999999999999888643332 23323222 2457654
No 419
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=20.57 E-value=2.1e+02 Score=27.41 Aligned_cols=44 Identities=25% Similarity=0.303 Sum_probs=33.3
Q ss_pred CCChHHHHHHHHHHHCCCeEEEE-ccCccccHHHHHHHHHhcCCC
Q 024820 153 PALPASLTFYKELKQLGFKIFLL-TGRNEFQRNTTEKNLLFAGYS 196 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~v-TgR~e~~r~~T~~nL~~~G~~ 196 (262)
-..|.+.++++.+++.|+.+.+. |+..--......+.|.++|+.
T Consensus 86 l~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld 130 (404)
T TIGR03278 86 SCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVR 130 (404)
T ss_pred ccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCC
Confidence 34578899999999999999985 875533345667788888875
No 420
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=20.55 E-value=1.5e+02 Score=20.20 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=23.5
Q ss_pred HHHHHCCCeEEEEccCcc-ccHHHHHHHHHhcCC
Q 024820 163 KELKQLGFKIFLLTGRNE-FQRNTTEKNLLFAGY 195 (262)
Q Consensus 163 ~~Lk~~GikI~~vTgR~e-~~r~~T~~nL~~~G~ 195 (262)
++|++.|+++..++++.. ..|....+.+++-..
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~ 34 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI 34 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc
Confidence 468899999999998654 346666666665443
No 421
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=20.53 E-value=2.4e+02 Score=26.91 Aligned_cols=83 Identities=20% Similarity=0.223 Sum_probs=48.7
Q ss_pred HHHHHHHHCC-Ce-EEEEccCccccH--HHHHHHHHhcCCC--CcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEE
Q 024820 160 TFYKELKQLG-FK-IFLLTGRNEFQR--NTTEKNLLFAGYS--DWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHG 233 (262)
Q Consensus 160 ell~~Lk~~G-ik-I~~vTgR~e~~r--~~T~~nL~~~G~~--~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~ 233 (262)
-+++++++.+ +. ++++||-. | +.-..-|..+|+. .|+=-++......++....--.+.-.-+.+.....++
T Consensus 21 pli~~~~~~~~~~~~vi~TGQH---~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~kPD~Vl 97 (383)
T COG0381 21 PLVKALEKDPDFELIVIHTGQH---RDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLEEEKPDLVL 97 (383)
T ss_pred HHHHHHHhCCCCceEEEEeccc---ccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence 4567777775 44 55788876 5 6677778888886 3332334322221111111122333334455677999
Q ss_pred EECCCccccccc
Q 024820 234 SSGDQWSDLLGF 245 (262)
Q Consensus 234 ~IGDq~sDl~g~ 245 (262)
+-||+-+-|.|+
T Consensus 98 VhGDT~t~lA~a 109 (383)
T COG0381 98 VHGDTNTTLAGA 109 (383)
T ss_pred EeCCcchHHHHH
Confidence 999999999864
No 422
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.28 E-value=1.7e+02 Score=21.04 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHCCCeEEEEccCc
Q 024820 157 ASLTFYKELKQLGFKIFLLTGRN 179 (262)
Q Consensus 157 galell~~Lk~~GikI~~vTgR~ 179 (262)
...++.+.|+++|+++..+|...
T Consensus 54 ~~~~i~~~L~~~G~~~~~~~~~~ 76 (85)
T cd04906 54 ELAELLEDLKSAGYEVVDLSDDE 76 (85)
T ss_pred HHHHHHHHHHHCCCCeEECCCCH
Confidence 35566667777777776666544
No 423
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=20.25 E-value=3.5e+02 Score=22.78 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=20.6
Q ss_pred CCChHHHHHHHHHHHCCCeEEEEc
Q 024820 153 PALPASLTFYKELKQLGFKIFLLT 176 (262)
Q Consensus 153 ~~ipgalell~~Lk~~GikI~~vT 176 (262)
..++.+.++++.++++|+.|+++-
T Consensus 54 ~~~~~i~~li~~ar~~g~pVi~t~ 77 (203)
T cd01013 54 QLIANIARLRDWCRQAGIPVVYTA 77 (203)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEe
Confidence 467789999999999999999863
No 424
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=20.23 E-value=2.2e+02 Score=25.80 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=10.2
Q ss_pred HHHHHHHCCCeEEEEccCc
Q 024820 161 FYKELKQLGFKIFLLTGRN 179 (262)
Q Consensus 161 ll~~Lk~~GikI~~vTgR~ 179 (262)
+.++|.+.|+++.+++...
T Consensus 152 la~eL~~~GI~vtlI~Dsa 170 (275)
T PRK08335 152 LANELEFLGIEFEVITDAQ 170 (275)
T ss_pred HHHHHHHCCCCEEEEeccH
Confidence 3555555555555555443
No 425
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=20.23 E-value=4.2e+02 Score=21.19 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCccEEEEE
Q 024820 156 PASLTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGYRIHGSS 235 (262)
Q Consensus 156 pgalell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~~iv~~I 235 (262)
.+..+|=+.|++.|+.+.++.|.+ .+...+..++.|+ ..++...+-. . ....--...+..+.+.|..+...-
T Consensus 53 ~sL~~L~~~L~~~g~~L~v~~g~~---~~~l~~l~~~~~~---~~V~~~~~~~-~-~~~~rd~~v~~~l~~~~i~~~~~~ 124 (165)
T PF00875_consen 53 ESLADLQESLRKLGIPLLVLRGDP---EEVLPELAKEYGA---TAVYFNEEYT-P-YERRRDERVRKALKKHGIKVHTFD 124 (165)
T ss_dssp HHHHHHHHHHHHTTS-EEEEESSH---HHHHHHHHHHHTE---SEEEEE---S-H-HHHHHHHHHHHHHHHTTSEEEEE-
T ss_pred HHHHHHHHHHHhcCcceEEEecch---HHHHHHHHHhcCc---CeeEeccccC-H-HHHHHHHHHHHHHHhcceEEEEEC
Confidence 477888889999999999999997 5555666677785 3455543211 0 011122344455666677766655
Q ss_pred CCCcc
Q 024820 236 GDQWS 240 (262)
Q Consensus 236 GDq~s 240 (262)
|+..-
T Consensus 125 ~~~L~ 129 (165)
T PF00875_consen 125 DHTLV 129 (165)
T ss_dssp -SSSS
T ss_pred CcEEE
Confidence 55444
No 426
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=20.21 E-value=4.3e+02 Score=21.85 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=16.0
Q ss_pred HHHHHHHHHCCCeEEEEccCc
Q 024820 159 LTFYKELKQLGFKIFLLTGRN 179 (262)
Q Consensus 159 lell~~Lk~~GikI~~vTgR~ 179 (262)
.++.+.+++.|++|.+|.=-.
T Consensus 126 ~~~~~~l~~~~I~v~~IgiG~ 146 (183)
T cd01453 126 YETIDKLKKENIRVSVIGLSA 146 (183)
T ss_pred HHHHHHHHHcCcEEEEEEech
Confidence 456778888999998877654
No 427
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=20.19 E-value=82 Score=20.85 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHH
Q 024820 142 AFDEWVDLAKAPALPASLTFYKELKQ 167 (262)
Q Consensus 142 ~~~~wv~~~~a~~ipgalell~~Lk~ 167 (262)
.|++|+.-+.-|.-..+++.++.+-.
T Consensus 19 dWd~wvSf~GrPltdevK~a~k~i~~ 44 (49)
T PF06543_consen 19 DWDKWVSFDGRPLTDEVKEAMKLIFG 44 (49)
T ss_pred chHHheeeCCeeCCHHHHHHHHHHHh
Confidence 69999998888888888888877653
No 428
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=20.16 E-value=6.8e+02 Score=22.95 Aligned_cols=85 Identities=20% Similarity=0.292 Sum_probs=47.1
Q ss_pred CCeEEEEccCccc--cHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhhcCc---cEEEEECC-Ccccc
Q 024820 169 GFKIFLLTGRNEF--QRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVNEGY---RIHGSSGD-QWSDL 242 (262)
Q Consensus 169 GikI~~vTgR~e~--~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~~g~---~iv~~IGD-q~sDl 242 (262)
+-+++++|+..-. ..+...+.|.+.|+.. ...++ ++.+..|+..... .....+.+.|. ..++.||- +..|+
T Consensus 24 ~~~~livtd~~~~~~~~~~l~~~L~~~g~~~-~~~~~-~~~e~~~~~~~v~-~~~~~~~~~~~~r~d~IIaiGGGsv~D~ 100 (345)
T cd08195 24 GSKILIVTDENVAPLYLEKLKAALEAAGFEV-EVIVI-PAGEASKSLETLE-KLYDALLEAGLDRKSLIIALGGGVVGDL 100 (345)
T ss_pred CCeEEEEECCchHHHHHHHHHHHHHhcCCce-EEEEe-CCCCCcCCHHHHH-HHHHHHHHcCCCCCCeEEEECChHHHhH
Confidence 4688999987532 3455667788888863 22333 3333333322222 33334445555 45666765 66688
Q ss_pred cccc-----ccccEEEeCC
Q 024820 243 LGFA-----KAERSFKLPN 256 (262)
Q Consensus 243 ~g~~-----~g~r~fklPN 256 (262)
.+.- .|.+.+.+|-
T Consensus 101 ak~vA~~~~rgip~i~VPT 119 (345)
T cd08195 101 AGFVAATYMRGIDFIQIPT 119 (345)
T ss_pred HHHHHHHHhcCCCeEEcch
Confidence 7643 3666666663
No 429
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=20.08 E-value=96 Score=27.14 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHCCCeEEEEccCc
Q 024820 156 PASLTFYKELKQLGFKIFLLTGRN 179 (262)
Q Consensus 156 pgalell~~Lk~~GikI~~vTgR~ 179 (262)
+...++++.+++.|+++.+.||-.
T Consensus 87 ~~l~~li~~l~~~g~~v~leTNGt 110 (238)
T TIGR03365 87 KPLGELIDLGKAKGYRFALETQGS 110 (238)
T ss_pred HhHHHHHHHHHHCCCCEEEECCCC
Confidence 678899999999999999999987
No 430
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=20.00 E-value=1.9e+02 Score=24.07 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=35.3
Q ss_pred HHHHHHHHHCCCeEEEEccCccccHHHHHHHHHhcCCCCcceeEeeCCCCCCCCchhhhHHHHHhhhh
Q 024820 159 LTFYKELKQLGFKIFLLTGRNEFQRNTTEKNLLFAGYSDWKKLFLRGPSDQGKPATVYKSEKRLELVN 226 (262)
Q Consensus 159 lell~~Lk~~GikI~~vTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~Kp~~~~Ks~~r~~L~~ 226 (262)
.++++.+++.|++|+++|..+..-.+...+.|+. . ..+++.+++ +.|+.....|..
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~---k--~~vl~G~SG-------vGKSSLiN~L~~ 57 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG---K--TSVLLGQSG-------VGKSSLINALLP 57 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT---S--EEEEECSTT-------SSHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC---C--EEEEECCCC-------CCHHHHHHHHHh
Confidence 3567788999999999999875555555555543 1 234444333 456677666653
Done!