BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024822
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CT4|A Chain A, Solution Strutcure Of The Sh3 Domain Of The Cdc42-
Interacting Protein 4
Length = 70
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 185 YIEGSDNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGMLVCSLLEFDS 243
+ EGS G ++S+ +++ + +D+GDGW + E GG+G + S L S
Sbjct: 15 HFEGSSEG---TISMAEGEDLSLMEEDKGDGWTRVRRKE-----GGEGYVPTSYLRVTS 65
>pdb|2AXC|A Chain A, Crystal Structure Of Cole7 Translocation Domain
Length = 264
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 3 ITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADS 40
I +LPAE ++N+ T P D +SV RV D+
Sbjct: 96 IVTSLPAETVTNVQVSTLPLDQATVSVTKRVTDVVKDT 133
>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 86 NNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTSLPESRFP-EVAKVNSVWWFN 144
N +S ESG C +G ++ +PY + + + +S F E A ++ + N
Sbjct: 70 NLSILSLLAHLESGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLN 129
Query: 145 VKAMIETKILSLRAN 159
V++ +E K + A
Sbjct: 130 VESFMELKTIETIAQ 144
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l
Mutant) From Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 86 NNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTSLPESRFP-EVAKVNSVWWFN 144
N +S ESG C +G ++ +PY + + + +S F E A ++ + N
Sbjct: 70 NLSILSLLAHLESGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLN 129
Query: 145 VKAMIETKILSLRAN 159
V++ +E K + A
Sbjct: 130 VESFMELKTIETIAQ 144
>pdb|3JS8|A Chain A, Solvent-Stable Cholesterol Oxidase
Length = 540
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 149 IETKILSLRA-----NYGAYLVFKFAESRSGFERRPVISRVYIEGSDNGLRRSLSLDPSR 203
I +LSL A GAY + KFA R+ + P+++ V RSL ++ +
Sbjct: 164 ISNLVLSLTAVVYDKASGAYALRKFA--RNDPQIAPLLAHV---------GRSLIVEATL 212
Query: 204 NMARLSQDRGDGWMEIEMGEFFNENGGDGMLVCSLLE 240
A + R W I GE F G G S L+
Sbjct: 213 QAAPNQRLRCQSWFNIPYGEMFAAAGSGGRTFASYLD 249
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 217 MEIEMGEFFNENGGDGMLVCSLLEFD 242
+ +EMG+ +N+ G DG + C +L D
Sbjct: 30 LMLEMGQLWNQPGPDGNIFCGMLNPD 55
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 217 MEIEMGEFFNENGGDGMLVCSLLEFD 242
+ +EMG+ +N+ G DG + C +L D
Sbjct: 32 LMLEMGQLWNQPGPDGNIFCGMLNPD 57
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 217 MEIEMGEFFNENGGDGMLVCSLLEFD 242
+ +EMG+ +N+ G DG + C +L D
Sbjct: 34 LMLEMGQLWNQPGPDGNIFCGMLNPD 59
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 217 MEIEMGEFFNENGGDGMLVCSLLEFD 242
+ +EMG+ +N+ G DG + C +L D
Sbjct: 32 LMLEMGQLWNQPGPDGNIFCGMLNPD 57
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 217 MEIEMGEFFNENGGDGMLVCSLLEFD 242
+ +EMG+ +N+ G DG + C +L D
Sbjct: 32 LMLEMGQLWNQPGPDGNIFCGMLNPD 57
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 217 MEIEMGEFFNENGGDGMLVCSLLEFD 242
+ +EMG+ +N+ G DG + C +L D
Sbjct: 32 LMLEMGQLWNQPGPDGNIFCGMLNPD 57
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 217 MEIEMGEFFNENGGDGMLVCSLLEFD 242
+ +EMG+ +N+ G DG + C +L D
Sbjct: 32 LMLEMGQLWNQPGPDGNIFCGMLNPD 57
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 217 MEIEMGEFFNENGGDGMLVCSLLEFD 242
+ +EMG+ +N+ G DG + C +L D
Sbjct: 32 LMLEMGQLWNQPGPDGNIFCGMLNPD 57
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 217 MEIEMGEFFNENGGDGMLVCSLLEFD 242
+ +EMG+ +N+ G DG + C +L D
Sbjct: 32 LMLEMGQLWNQPGPDGNIFCGMLNPD 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,179,373
Number of Sequences: 62578
Number of extensions: 267775
Number of successful extensions: 481
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 471
Number of HSP's gapped (non-prelim): 14
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)