Query 024822
Match_columns 262
No_of_seqs 175 out of 349
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:40:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14299 PP2: Phloem protein 2 100.0 1E-66 2.2E-71 438.8 20.7 152 99-260 1-154 (154)
2 PF12937 F-box-like: F-box-lik 98.7 9.8E-09 2.1E-13 69.3 3.3 45 4-48 1-45 (47)
3 PF00646 F-box: F-box domain; 98.4 1.2E-07 2.6E-12 63.7 1.6 44 4-47 3-46 (48)
4 smart00256 FBOX A Receptor for 98.3 4.9E-07 1.1E-11 58.2 3.5 40 7-46 1-40 (41)
5 KOG2997 F-box protein FBX9 [Ge 91.8 0.069 1.5E-06 50.3 1.0 82 4-87 107-194 (366)
6 PF06881 Elongin_A: RNA polyme 91.0 0.14 3E-06 40.6 1.9 73 2-80 2-74 (109)
7 KOG3926 F-box proteins [Amino 88.4 0.23 5E-06 45.9 1.4 75 3-79 201-278 (332)
8 KOG0274 Cdc4 and related F-box 85.5 0.46 1E-05 47.8 1.9 51 3-53 107-157 (537)
9 KOG4408 Putative Mg2+ and Co2+ 84.1 0.3 6.5E-06 46.3 -0.2 50 4-53 8-57 (386)
10 PF02018 CBM_4_9: Carbohydrate 83.0 16 0.00035 28.0 9.5 69 153-239 57-125 (131)
11 PLN03215 ascorbic acid mannose 78.0 2 4.4E-05 41.4 3.1 38 4-41 4-42 (373)
12 KOG2120 SCF ubiquitin ligase, 65.9 5.5 0.00012 38.0 2.9 42 5-46 99-140 (419)
13 PF13013 F-box-like_2: F-box-l 55.7 11 0.00024 30.1 2.6 37 4-40 22-58 (109)
14 KOG0281 Beta-TrCP (transducin 42.0 18 0.00039 35.0 2.2 43 3-45 74-120 (499)
15 KOG4114 Cytochrome c oxidase a 41.8 13 0.00029 27.4 1.0 16 5-20 39-54 (73)
16 KOG3233 RNA polymerase III, su 26.6 11 0.00024 34.9 -1.8 43 96-146 137-183 (297)
No 1
>PF14299 PP2: Phloem protein 2
Probab=100.00 E-value=1e-66 Score=438.84 Aligned_cols=152 Identities=46% Similarity=0.838 Sum_probs=145.2
Q ss_pred CCeeEEeecccceeeecCCCCceEEeeCCCCccccceEEeeeeEEEEEEEEeccccCCCceeEEEEEEEeccccCCCCcc
Q 024822 99 GKKCYMVGARGLSIAGADEPYTWILTSLPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERR 178 (262)
Q Consensus 99 g~kCymlsaR~L~ItWgd~~~yW~W~~~~~Srf~eVAeL~~VcWleI~G~i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~ 178 (262)
|+||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++|||+|+|+||||||+++++|||+..
T Consensus 1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~ 80 (154)
T PF14299_consen 1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP 80 (154)
T ss_pred CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CEEEEEEEecCCCc--eeEEEeccCCccccccccccCCCeEEEEeeeEEecCCCccEEEEEEEEEecCcccccEEEEEEE
Q 024822 179 PVISRVYIEGSDNG--LRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGMLVCSLLEFDSYIAMRGLIIQGIE 256 (262)
Q Consensus 179 pv~~~v~~~~~~~~--~~~~v~l~~~~~~~~~P~~r~dgW~Eie~GeF~~~~~~~~ev~fsl~e~~~~~wK~GLiv~Gie 256 (262)
||+++|++++ ++. +.+.+++ |++|+|||||||+|||+++++++++|+|+|+|+++++||+||||+|||
T Consensus 81 pv~~~v~~~~-~~~~~~~~~~~~---------~~~r~dgW~Eie~GeF~~~~~~~~ev~f~~~E~~~~~wK~GLiv~Gie 150 (154)
T PF14299_consen 81 PVEFSVKVPD-GEKYEQERKVCL---------PKERGDGWMEIELGEFFNEGGDDGEVEFSMYEVDSGHWKGGLIVEGIE 150 (154)
T ss_pred CEEEEEEeCC-CccccceeeEEc---------CCCCCCCEEEEEcceEEecCCCCcEEEEEEEEecCCcccCeEEEEEEE
Confidence 9999999988 554 5567776 678899999999999999998999999999999999999999999999
Q ss_pred EEec
Q 024822 257 LRPK 260 (262)
Q Consensus 257 IRPk 260 (262)
||||
T Consensus 151 IRPK 154 (154)
T PF14299_consen 151 IRPK 154 (154)
T ss_pred EecC
Confidence 9998
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.72 E-value=9.8e-09 Score=69.26 Aligned_cols=45 Identities=38% Similarity=0.624 Sum_probs=40.1
Q ss_pred cccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccCC
Q 024822 4 TIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFL 48 (262)
Q Consensus 4 ~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fL 48 (262)
+.+||+|.+..|+++++|.|.+++++||+.|+.++.++.+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~ 45 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC 45 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence 368999999999999999999999999999999999999998764
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.39 E-value=1.2e-07 Score=63.70 Aligned_cols=44 Identities=39% Similarity=0.642 Sum_probs=38.6
Q ss_pred cccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccC
Q 024822 4 TIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENF 47 (262)
Q Consensus 4 ~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~f 47 (262)
+.+||++++.+|++++++.|.++++.||+.|+.+++++..|.++
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 56899999999999999999999999999999999999999765
No 4
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.34 E-value=4.9e-07 Score=58.18 Aligned_cols=40 Identities=43% Similarity=0.633 Sum_probs=38.6
Q ss_pred ccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhcc
Q 024822 7 LPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWEN 46 (262)
Q Consensus 7 Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~ 46 (262)
||++++..|+++++|.|.+++++||+.|+.+.+++.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999975
No 5
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=91.80 E-value=0.069 Score=50.30 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=57.1
Q ss_pred cccccHHHHHHHHhc-----CChhhHhhhhhccHHHHhhhcCchhhccCCCCchhhhhcccCCCccc-ccCCCHHHHHHh
Q 024822 4 TIALPAECISNIISL-----TTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSL-ITSLSKKDLYFH 77 (262)
Q Consensus 4 ~~~Lpe~cia~ils~-----t~P~d~cr~a~vs~~fr~aa~sd~vW~~fLP~dy~~Il~~~~~~~~~-~~~~SkKely~~ 77 (262)
+..||++.+-.|+.. ++-++.-++|+|++.|+-+|..|.+|+.+|=.-|+.-+....+-... .-..|.+++|..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~ 186 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLE 186 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhh
Confidence 368999998888765 45599999999999999999999999999887666433322211100 013567888876
Q ss_pred hccCCeEecC
Q 024822 78 LCHNPIIINN 87 (262)
Q Consensus 78 L~~~pvlld~ 87 (262)
-- -|.+||
T Consensus 187 Rp--RvrFdG 194 (366)
T KOG2997|consen 187 RP--RVRFDG 194 (366)
T ss_pred Cc--ceeecc
Confidence 32 355543
No 6
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=90.97 E-value=0.14 Score=40.55 Aligned_cols=73 Identities=16% Similarity=0.284 Sum_probs=57.0
Q ss_pred cccccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccCCCCchhhhhcccCCCcccccCCCHHHHHHhhcc
Q 024822 2 DITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSLITSLSKKDLYFHLCH 80 (262)
Q Consensus 2 ~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fLP~dy~~Il~~~~~~~~~~~~~SkKely~~L~~ 80 (262)
+-++++|-..|.-||...+|....++-.-|+.+ +-++|.+|.+|+=.||..-..... +. ...|-+++|.++.+
T Consensus 2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~-~~---~~~~Wr~~Y~~~~~ 74 (109)
T PF06881_consen 2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQK-PK---EPESWRELYEKLKK 74 (109)
T ss_pred CccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhccc-cc---ccchHHHHHHHHHH
Confidence 346789999999999999999999999988765 456999999999999975222211 21 23588999999864
No 7
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=88.38 E-value=0.23 Score=45.89 Aligned_cols=75 Identities=21% Similarity=0.328 Sum_probs=53.9
Q ss_pred ccccccHHHHHHHHhcCC-hhhHhhhhhccHHHHhhhcCchhhccCCCCchh--hhhcccCCCcccccCCCHHHHHHhhc
Q 024822 3 ITIALPAECISNIISLTT-PRDACRLSVVSRVFRSAADSDSAWENFLPSDYK--QIISNSVSDSSLITSLSKKDLYFHLC 79 (262)
Q Consensus 3 ~~~~Lpe~cia~ils~t~-P~d~cr~a~vs~~fr~aa~sd~vW~~fLP~dy~--~Il~~~~~~~~~~~~~SkKely~~L~ 79 (262)
.+-|||++|+..||-+++ -+|.--+|.|-.++...++.+-+|.+.+--.|. +|-...... .....-.|++|++|-
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~--k~~q~dWkqmyf~L~ 278 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILS--KKGQKDWKQMYFQLR 278 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhc--cccchhHHHHHHHHH
Confidence 356899999999999765 899999999999999999999999987765443 233222210 000123567888774
No 8
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=85.48 E-value=0.46 Score=47.79 Aligned_cols=51 Identities=24% Similarity=0.293 Sum_probs=45.5
Q ss_pred ccccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccCCCCchh
Q 024822 3 ITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYK 53 (262)
Q Consensus 3 ~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fLP~dy~ 53 (262)
.+..||-+-.-.|++++++++.|+++.||+.|+.-++.|.+|.+.+.....
T Consensus 107 fi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~ 157 (537)
T KOG0274|consen 107 FLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIG 157 (537)
T ss_pred hhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcc
Confidence 456899999999999999999999999999999999999999877666443
No 9
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=84.09 E-value=0.3 Score=46.34 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=45.9
Q ss_pred cccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccCCCCchh
Q 024822 4 TIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYK 53 (262)
Q Consensus 4 ~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fLP~dy~ 53 (262)
++.+|.+-+..+++++.++++.+.|+||+.+...++-+..|++++-.++.
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l~ 57 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYLL 57 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhcccccccccccccc
Confidence 47889999999999999999999999999999999999999999966553
No 10
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=83.01 E-value=16 Score=27.97 Aligned_cols=69 Identities=12% Similarity=0.037 Sum_probs=42.5
Q ss_pred ccCCCceeEEEEEEEeccccCCCCccCEEEEEEEecCCCceeEEEeccCCccccccccccCCCeEEEEeeeEEecCCCcc
Q 024822 153 ILSLRANYGAYLVFKFAESRSGFERRPVISRVYIEGSDNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDG 232 (262)
Q Consensus 153 ~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~~~~~~~~~v~l~~~~~~~~~P~~r~dgW~Eie~GeF~~~~~~~~ 232 (262)
.|-||.+|.+.|-+|.... .++.+.+...+ +........-. ..-.+.|.++++ +|... .+..
T Consensus 57 ~l~~G~~Y~~s~~vk~~~~------~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~W~~~s~-~ft~~-~~~~ 118 (131)
T PF02018_consen 57 SLKPGKTYTVSFWVKADSG------GTVSVSLRDED-GSPYNWYTGQT---------VTITGEWTKYSG-TFTAP-SDDD 118 (131)
T ss_dssp EE-TTSEEEEEEEEEESSS------EEEEEEEEESS-TTTEEEEEEEE---------EEETSSEEEEEE-EEEEE-SSCE
T ss_pred EecCCCEEEEEEEEEeCCC------CEEEEEEEEcC-CCCcEEEEEEE---------EECCCCcEEEEE-EEEEC-CCCc
Confidence 3559999999999999874 56666766655 32111111100 111489999994 89887 4445
Q ss_pred EEEEEEE
Q 024822 233 MLVCSLL 239 (262)
Q Consensus 233 ev~fsl~ 239 (262)
.+.|.+.
T Consensus 119 ~~~l~~~ 125 (131)
T PF02018_consen 119 TVRLYFE 125 (131)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 6666543
No 11
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=78.02 E-value=2 Score=41.41 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=34.7
Q ss_pred cccccHHHHHHHHhcC-ChhhHhhhhhccHHHHhhhcCc
Q 024822 4 TIALPAECISNIISLT-TPRDACRLSVVSRVFRSAADSD 41 (262)
Q Consensus 4 ~~~Lpe~cia~ils~t-~P~d~cr~a~vs~~fr~aa~sd 41 (262)
-.+||++.+..|..++ +..|..|+++|+++.|+|+...
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence 4689999999999998 7999999999999999998863
No 12
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=65.95 E-value=5.5 Score=37.96 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=40.1
Q ss_pred ccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhcc
Q 024822 5 IALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWEN 46 (262)
Q Consensus 5 ~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~ 46 (262)
++||++.+-.|+|.+--.|.-++|.|++.|...|....+|..
T Consensus 99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~ 140 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT 140 (419)
T ss_pred ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence 789999999999999999999999999999999999999954
No 13
>PF13013 F-box-like_2: F-box-like domain
Probab=55.74 E-value=11 Score=30.14 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=33.8
Q ss_pred cccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcC
Q 024822 4 TIALPAECISNIISLTTPRDACRLSVVSRVFRSAADS 40 (262)
Q Consensus 4 ~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~s 40 (262)
+.|||++....|..+-++.+...+....+++|.+.+.
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~ 58 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDH 58 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999987554
No 14
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=41.95 E-value=18 Score=34.95 Aligned_cols=43 Identities=21% Similarity=0.433 Sum_probs=36.9
Q ss_pred cccccc----HHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhc
Q 024822 3 ITIALP----AECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWE 45 (262)
Q Consensus 3 ~~~~Lp----e~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~ 45 (262)
.++.|| |.....|+|+++..+.|.+-.||+..+.+-+...+|.
T Consensus 74 Fi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 74 FITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 456799 8899999999999999999999999988876666663
No 15
>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]
Probab=41.85 E-value=13 Score=27.41 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=14.0
Q ss_pred ccccHHHHHHHHhcCC
Q 024822 5 IALPAECISNIISLTT 20 (262)
Q Consensus 5 ~~Lpe~cia~ils~t~ 20 (262)
.+|||+|++.+=.|+.
T Consensus 39 ~~vPeeC~al~~af~d 54 (73)
T KOG4114|consen 39 KDVPEECIALMKAFLD 54 (73)
T ss_pred ccCcHHHHHHHHHHHH
Confidence 5799999999988875
No 16
>KOG3233 consensus RNA polymerase III, subunit C34 [Transcription]
Probab=26.58 E-value=11 Score=34.95 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=29.8
Q ss_pred ecCCCeeEEeec--ccceeeecCCCCceEEeeCCC--CccccceEEeeeeEEEEE
Q 024822 96 PESGKKCYMVGA--RGLSIAGADEPYTWILTSLPE--SRFPEVAKVNSVWWFNVK 146 (262)
Q Consensus 96 k~sg~kCymlsa--R~L~ItWgd~~~yW~W~~~~~--Srf~eVAeL~~VcWleI~ 146 (262)
+.+++|||||.. -..+||.| .|.+..+ +.|.| -|+++||.=+.
T Consensus 137 ~n~~~KvYmLy~leP~~elTGG------~WytDqdlDvEfIe--~L~~~c~~fl~ 183 (297)
T KOG3233|consen 137 KNSRKKVYMLYDLEPDSELTGG------TWYTDQDLDVEFIE--VLKQICVRFLE 183 (297)
T ss_pred cCCCceEEEEecccccccccCC------cccccccccHHHHH--HHHHHHHHHHH
Confidence 468899999986 45688887 3665443 45555 58899984433
Done!