Query 024822
Match_columns 262
No_of_seqs 175 out of 349
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 14:59:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 5.9E-09 2E-13 70.9 4.4 45 3-47 8-52 (53)
2 3l2o_B F-box only protein 4; s 98.5 8E-08 2.7E-12 88.0 4.5 77 3-79 4-93 (312)
3 2ovr_B FBW7, F-BOX/WD repeat p 98.0 2.2E-06 7.7E-11 78.5 3.0 49 1-49 16-64 (445)
4 2e31_A FBS1, F-box only protei 97.9 0.0016 5.5E-08 59.3 19.4 81 2-88 49-131 (297)
5 3v7d_B Cell division control p 97.7 1E-05 3.5E-10 74.1 2.1 47 2-48 13-60 (464)
6 1p22_A F-BOX/WD-repeat protein 97.7 8.7E-06 3E-10 74.7 1.1 50 2-51 9-62 (435)
7 2ast_B S-phase kinase-associat 96.8 0.00086 2.9E-08 59.3 3.8 45 3-47 8-52 (336)
8 2p1m_B Transport inhibitor res 95.3 0.0095 3.3E-07 56.5 3.5 36 2-37 4-40 (594)
9 3ogk_B Coronatine-insensitive 92.6 0.064 2.2E-06 50.8 3.2 34 5-38 14-48 (592)
10 1dyo_A Endo-1,4-beta-xylanase 92.4 3.6 0.00012 33.2 13.4 95 152-261 63-157 (160)
11 4hfx_A Transcription elongatio 83.2 0.3 1E-05 37.2 0.7 65 6-80 12-76 (97)
12 2w5f_A Endo-1,4-beta-xylanase 63.4 80 0.0027 30.2 12.3 93 151-260 77-169 (540)
13 3tes_A Tencon; fibronectin typ 33.7 70 0.0024 22.5 5.1 36 149-188 57-92 (98)
14 1gui_A Laminarinase 16A; carbo 33.2 1.6E+02 0.0055 22.5 12.5 81 153-260 68-155 (155)
15 2edd_A Netrin receptor DCC; tu 30.1 1.6E+02 0.0055 21.5 7.9 18 152-169 83-100 (123)
16 2xom_A Arabinogalactan endo-1, 26.9 2.3E+02 0.0078 22.2 10.3 81 156-261 70-152 (152)
17 3qht_C Monobody YSMB-1; fibron 26.3 77 0.0026 22.0 4.1 35 149-183 60-94 (97)
18 1x5a_A Ephrin type-A receptor 23.5 1.1E+02 0.0038 21.7 4.6 33 149-182 64-96 (107)
19 2qbw_A PDZ-fibronectin fusion 22.4 1.1E+02 0.0036 24.3 4.7 35 150-185 160-194 (195)
20 2dle_A Receptor-type tyrosine- 21.9 1.3E+02 0.0045 21.7 4.8 34 149-186 61-94 (104)
21 2lde_A Sarafotoxin-I3; endothe 21.6 20 0.00069 20.5 0.1 10 110-119 17-26 (26)
22 3b83_A Ten-D3; beta sheet, com 21.4 1.7E+02 0.0058 20.3 5.2 36 149-188 57-92 (100)
23 3k2m_C Monobody HA4; engineere 21.2 1.4E+02 0.0047 20.9 4.7 36 149-185 62-99 (101)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.76 E-value=5.9e-09 Score=70.87 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=40.1
Q ss_pred ccccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccC
Q 024822 3 ITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENF 47 (262)
Q Consensus 3 ~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~f 47 (262)
.+++||++++..|+++++|.|.+++++||+.|+.++.++.+|+++
T Consensus 8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 467899999999999999999999999999999999999999864
No 2
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.48 E-value=8e-08 Score=87.97 Aligned_cols=77 Identities=21% Similarity=0.344 Sum_probs=60.9
Q ss_pred ccccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccCCCCchh---hhhcccCCCcc----------cccCC
Q 024822 3 ITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYK---QIISNSVSDSS----------LITSL 69 (262)
Q Consensus 3 ~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fLP~dy~---~Il~~~~~~~~----------~~~~~ 69 (262)
.+++||.+++.+|+||++|+|+||+|+||+.+|.+|+.+.+|+.||-.|+. +|...+.+... ...+.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~~ 83 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAFF 83 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----CC
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCccccccccccc
Confidence 578999999999999999999999999999999999999999999987644 44433222110 00145
Q ss_pred CHHHHHHhhc
Q 024822 70 SKKDLYFHLC 79 (262)
Q Consensus 70 SkKely~~L~ 79 (262)
.++..|.+=|
T Consensus 84 ~~~~~y~~~~ 93 (312)
T 3l2o_B 84 DYMAVYRMCC 93 (312)
T ss_dssp CHHHHHHHHC
T ss_pred cHHHHHHhcC
Confidence 6899999988
No 3
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.00 E-value=2.2e-06 Score=78.55 Aligned_cols=49 Identities=22% Similarity=0.368 Sum_probs=45.8
Q ss_pred CcccccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccCCC
Q 024822 1 MDITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLP 49 (262)
Q Consensus 1 ~~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fLP 49 (262)
++.+..||++++..|++|++|.|.|++++||+.|+.+++++.+|++++-
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence 4678899999999999999999999999999999999999999998763
No 4
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.87 E-value=0.0016 Score=59.33 Aligned_cols=81 Identities=11% Similarity=0.199 Sum_probs=60.8
Q ss_pred cccccccHHHHHHHHhcCChhhHh-hhhhccHHHHhhhcCchhhccCCCCchhhhhcc-cCCCcccccCCCHHHHHHhhc
Q 024822 2 DITIALPAECISNIISLTTPRDAC-RLSVVSRVFRSAADSDSAWENFLPSDYKQIISN-SVSDSSLITSLSKKDLYFHLC 79 (262)
Q Consensus 2 ~~~~~Lpe~cia~ils~t~P~d~c-r~a~vs~~fr~aa~sd~vW~~fLP~dy~~Il~~-~~~~~~~~~~~SkKely~~L~ 79 (262)
..+..||++.+..||+++.|++.+ |+++||+.+|..++++.+|++.|.... +... ...+ +..+-|.+|..--
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g--~~~~~~~~~----~~~~Wk~~y~~~~ 122 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEG--LVPEGSADE----ERDHWQQFYFLSK 122 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTT--CCCC---------CCSCHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccC--cccccccCC----CCCChhhhhehee
Confidence 356799999999999999999999 999999999999999999998876651 2111 1111 2356899998743
Q ss_pred cCCeEecCC
Q 024822 80 HNPIIINNG 88 (262)
Q Consensus 80 ~~pvlld~g 88 (262)
..-+||.+.
T Consensus 123 ~gRNLL~NP 131 (297)
T 2e31_A 123 RRRNLLRNP 131 (297)
T ss_dssp HCCCCSSCS
T ss_pred cccceeecC
Confidence 345666543
No 5
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.70 E-value=1e-05 Score=74.06 Aligned_cols=47 Identities=23% Similarity=0.308 Sum_probs=43.9
Q ss_pred cccccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcC-chhhccCC
Q 024822 2 DITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADS-DSAWENFL 48 (262)
Q Consensus 2 ~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~s-d~vW~~fL 48 (262)
+.+..||++.+..|++|++|+|.|++++||+.++..+++ +.+|++++
T Consensus 13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~ 60 (464)
T 3v7d_B 13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL 60 (464)
T ss_dssp CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 567889999999999999999999999999999999987 89998876
No 6
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.67 E-value=8.7e-06 Score=74.66 Aligned_cols=50 Identities=22% Similarity=0.451 Sum_probs=46.0
Q ss_pred cccccccHH----HHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccCCCCc
Q 024822 2 DITIALPAE----CISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSD 51 (262)
Q Consensus 2 ~~~~~Lpe~----cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fLP~d 51 (262)
+.+..||++ .+..|++|++|.|.|++++||+.|+..++++.+|++++-..
T Consensus 9 d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~ 62 (435)
T 1p22_A 9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM 62 (435)
T ss_dssp CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred ChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 567889999 99999999999999999999999999999999999887554
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.75 E-value=0.00086 Score=59.29 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=40.8
Q ss_pred ccccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccC
Q 024822 3 ITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENF 47 (262)
Q Consensus 3 ~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~f 47 (262)
.+++||++++..|+++++++|.+++++||+.|+.++.+...|.+.
T Consensus 8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l 52 (336)
T 2ast_B 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (336)
T ss_dssp CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence 468999999999999999999999999999999999877778653
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.29 E-value=0.0095 Score=56.52 Aligned_cols=36 Identities=19% Similarity=0.460 Sum_probs=29.4
Q ss_pred cccccccHHHHHHHHhcCC-hhhHhhhhhccHHHHhh
Q 024822 2 DITIALPAECISNIISLTT-PRDACRLSVVSRVFRSA 37 (262)
Q Consensus 2 ~~~~~Lpe~cia~ils~t~-P~d~cr~a~vs~~fr~a 37 (262)
+++++||++++..|++|++ ++|++++|+||+.++.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 6788999999999999999 99999999999999988
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=92.57 E-value=0.064 Score=50.85 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=31.6
Q ss_pred ccccHHHHHHHHhcC-ChhhHhhhhhccHHHHhhh
Q 024822 5 IALPAECISNIISLT-TPRDACRLSVVSRVFRSAA 38 (262)
Q Consensus 5 ~~Lpe~cia~ils~t-~P~d~cr~a~vs~~fr~aa 38 (262)
.+||++++.+|++|+ +++|+++++.||+.|+.+.
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence 379999999999999 8999999999999999873
No 10
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=92.44 E-value=3.6 Score=33.16 Aligned_cols=95 Identities=9% Similarity=0.065 Sum_probs=56.6
Q ss_pred cccCCCceeEEEEEEEeccccCCCCccCEEEEEEEecCCCceeEEEeccCCccccccccccCCCeEEEEeeeEEecCCCc
Q 024822 152 KILSLRANYGAYLVFKFAESRSGFERRPVISRVYIEGSDNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGD 231 (262)
Q Consensus 152 ~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~~~~~~~~~v~l~~~~~~~~~P~~r~dgW~Eie~GeF~~~~~~~ 231 (262)
..|.||++|.+..-+|+.++. +...+.+++...+.+.. .+...+.. -....++|.+++-|.|......
T Consensus 63 ~~l~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g~-~~y~~i~~-------~~~~~~~W~~L~G~~ft~~~~~- 130 (160)
T 1dyo_A 63 RTFVPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSGT-QRYDTIDM-------KTVGPNQWVHLYNPQYRIPSDA- 130 (160)
T ss_dssp TTSCTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTSC-EEEEEEEE-------EEECSSCCEEEEEEEEECCTTC-
T ss_pred hhccCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCCC-EEEEEEee-------EEEcCCccEEEECcEEEeCCCC-
Confidence 468899999999999997743 22234444444231221 11222211 0122589999998899886542
Q ss_pred cEEEEEEEEEecCcccccEEEEEEEEEecC
Q 024822 232 GMLVCSLLEFDSYIAMRGLIIQGIELRPKS 261 (262)
Q Consensus 232 ~ev~fsl~e~~~~~wK~GLiv~GieIRPk~ 261 (262)
..+.+-+ | +..-..=+.|+.|.|.|..
T Consensus 131 ~~~~lyv-e--~~~~~~d~yiDdv~i~~~g 157 (160)
T 1dyo_A 131 TDMYVYV-E--TADDTINFYIDEAIGAVAG 157 (160)
T ss_dssp EEEEEEE-E--ESSCCCCEEEEEEEEEETT
T ss_pred CEEEEEE-E--CCCCCccEEEEEEEEEeCc
Confidence 2343322 3 3334566899999999864
No 11
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=83.22 E-value=0.3 Score=37.22 Aligned_cols=65 Identities=18% Similarity=0.386 Sum_probs=39.3
Q ss_pred cccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccCCCCchhhhhcccCCCcccccCCCHHHHHHhhcc
Q 024822 6 ALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSLITSLSKKDLYFHLCH 80 (262)
Q Consensus 6 ~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fLP~dy~~Il~~~~~~~~~~~~~SkKely~~L~~ 80 (262)
..|-+.+.-||-..||....++-.-|+.+ .-++|-+|.+++=.||..-- +. ..-|.+++|.+|.+
T Consensus 12 ~~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~-----p~---e~esWRelY~rl~~ 76 (97)
T 4hfx_A 12 GVPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER-----PE---EYESWREMYLRLQD 76 (97)
T ss_dssp --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC-----CC---SSSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC-----CC---CCCCHHHHHHHHHH
Confidence 35778888899999999999999999966 56899999999999987321 11 24689999999975
No 12
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A*
Probab=63.36 E-value=80 Score=30.23 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=53.5
Q ss_pred ccccCCCceeEEEEEEEeccccCCCCccCEEEEEEEecCCCceeEEEeccCCccccccccccCCCeEEEEeeeEEecCCC
Q 024822 151 TKILSLRANYGAYLVFKFAESRSGFERRPVISRVYIEGSDNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGG 230 (262)
Q Consensus 151 ~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~~~~~~~~~v~l~~~~~~~~~P~~r~dgW~Eie~GeF~~~~~~ 230 (262)
+..|.||++|....-+|. + |=...++.+++...+++.......++.. -....++|.+++ |.|......
T Consensus 77 ~~~l~~G~~Y~fSawVk~-~---g~~~~~v~l~l~~~d~~~~~~~~~~i~~-------~~~~~g~Wt~L~-g~ft~p~~~ 144 (540)
T 2w5f_A 77 GFYLDGGVEYKYSVFVKH-N---GTGTETFKLSVSYLDSETEEENKEVIAT-------KDVVAGEWTEIS-AKYKAPKTA 144 (540)
T ss_dssp TTTCCTTCEEEEEEEEEC-C---SSSEEEEEEEEEEEETTTCCEEEEEEEE-------EEEETTCCEEEE-EEEECCTTE
T ss_pred cceecCCCEEEEEEEEEe-C---CCCCceEEEEEEEecCCCCCceEEEeeE-------EEEeCCeeEEEE-eEEEecCCC
Confidence 457899999999999985 3 2122445655554331111111122210 011268999999 799875432
Q ss_pred ccEEEEEEEEEecCcccccEEEEEEEEEec
Q 024822 231 DGMLVCSLLEFDSYIAMRGLIIQGIELRPK 260 (262)
Q Consensus 231 ~~ev~fsl~e~~~~~wK~GLiv~GieIRPk 260 (262)
..+++-+ |.. -..-+.|+.|.|.++
T Consensus 145 -~~~~lyv-e~~---~~~~f~vDdvsl~~~ 169 (540)
T 2w5f_A 145 -VNITLSI-TTD---STVDFIFDDVTITRK 169 (540)
T ss_dssp -EEEEEEE-EES---SCCCEEEEEEEEEEC
T ss_pred -eEEEEEE-EcC---CCCCEEEEEEEEecC
Confidence 3444433 332 345788999998764
No 13
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}
Probab=33.69 E-value=70 Score=22.50 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=25.8
Q ss_pred EeccccCCCceeEEEEEEEeccccCCCCccCEEEEEEEec
Q 024822 149 IETKILSLRANYGAYLVFKFAESRSGFERRPVISRVYIEG 188 (262)
Q Consensus 149 i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~ 188 (262)
+...-|.|+|.|.+.+.-.-.. |- ..|+...+..+|
T Consensus 57 ~~l~gL~P~t~Y~~~V~A~~~~---g~-S~p~~~~~~~~~ 92 (98)
T 3tes_A 57 YDLTGLKPGTEYTVSIYGVKGG---HR-SNPLSAEFTTGG 92 (98)
T ss_dssp EEECSCCTTCEEEEEEEEEETT---EE-BCCEEEEEECSS
T ss_pred EEECCCCCCCEEEEEEEEEeCC---cc-cCCEEEEEEcCc
Confidence 4445689999999877655433 44 489999888855
No 14
>1gui_A Laminarinase 16A; carbohydrate binding module, CBM, glucan, cellulose; HET: BGC; 1.9A {Thermotoga maritima} SCOP: b.18.1.14
Probab=33.24 E-value=1.6e+02 Score=22.48 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=48.6
Q ss_pred ccCCCceeEEEEEEEeccccCCCCccCEEEEEEEecCCCc--e--eEEEeccCCccccccccccCCCeEEEEeeeEEecC
Q 024822 153 ILSLRANYGAYLVFKFAESRSGFERRPVISRVYIEGSDNG--L--RRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNEN 228 (262)
Q Consensus 153 ~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~~~~~--~--~~~v~l~~~~~~~~~P~~r~dgW~Eie~GeF~~~~ 228 (262)
.|.+|.+|.+.|..+-.. +..+.+.+...+.. . ...+.+ ...|-+++. +|....
T Consensus 68 ~l~~G~~Y~lsf~aka~~--------~~~i~v~l~~~~~~~~~~~~~~~~l-------------t~~w~~~~~-~ft~~~ 125 (155)
T 1gui_A 68 GLYRGKTYTISFKAKADT--------PRPINVKILQNHDPWTNYFAQTVNL-------------TADWQTFTF-TYTHPD 125 (155)
T ss_dssp ECCTTCEEEEEEEEEESS--------CEEEEEEEECSSTTCCEEEEEEEEE-------------CSSCEEEEE-EEECCT
T ss_pred EeCCCCEEEEEEEEEeCC--------CCcEEEEEEcCCCChHHheeccEee-------------CCCCEEEEE-EEEcCC
Confidence 477999999999888753 23444444331121 1 112222 357999986 777655
Q ss_pred CCc--cEEEEEEEEEecCccc-ccEEEEEEEEEec
Q 024822 229 GGD--GMLVCSLLEFDSYIAM-RGLIIQGIELRPK 260 (262)
Q Consensus 229 ~~~--~ev~fsl~e~~~~~wK-~GLiv~GieIRPk 260 (262)
..+ ..+.|.+ |... +.+.|+-|.+.|.
T Consensus 126 ~t~~~~~l~f~~-----g~~~~~~v~iD~VsL~P~ 155 (155)
T 1gui_A 126 DADEVVQISFEL-----GEGTATTIYFDDVTVSPQ 155 (155)
T ss_dssp TSCSEEEEEEEC-----CSSCCCEEEEEEEEEEEC
T ss_pred CCCceEEEEEEC-----CCCCCceEEEEEEEEEeC
Confidence 322 3444443 3333 6799999999984
No 15
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.09 E-value=1.6e+02 Score=21.50 Aligned_cols=18 Identities=11% Similarity=-0.018 Sum_probs=13.5
Q ss_pred cccCCCceeEEEEEEEec
Q 024822 152 KILSLRANYGAYLVFKFA 169 (262)
Q Consensus 152 ~~LSp~t~Y~ay~v~kl~ 169 (262)
.-|.|+|.|.+.++-.-.
T Consensus 83 ~gL~P~T~Y~f~V~A~n~ 100 (123)
T 2edd_A 83 TGLKPNTMYEFSVMVTKN 100 (123)
T ss_dssp ESCCTTCEEEEEEEECCS
T ss_pred cCCCCCCEEEEEEEEeCC
Confidence 358899999987765543
No 16
>2xom_A Arabinogalactan endo-1,4-beta-galactosidase; hydrolase, carbohydrate-binding module, glycoside hydrolase, beta-sandwich.; HET: GAL; 0.95A {Thermotoga maritima} PDB: 2xon_A*
Probab=26.88 E-value=2.3e+02 Score=22.18 Aligned_cols=81 Identities=11% Similarity=-0.019 Sum_probs=47.1
Q ss_pred CCceeEEEEEEEeccccCCCCccCEEEEEEEecC-CCceeEEEeccCCccccccccccCCCeEEEEeeeEEecCCCccEE
Q 024822 156 LRANYGAYLVFKFAESRSGFERRPVISRVYIEGS-DNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGML 234 (262)
Q Consensus 156 p~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~~-~~~~~~~v~l~~~~~~~~~P~~r~dgW~Eie~GeF~~~~~~~~ev 234 (262)
|+++|....-++-.. | + ++.+.+.+- +.... ..+ |..--..|..+.+-+|.+.. |++
T Consensus 70 p~gtYtlsa~v~~~~---~-~----~~yl~~~~~gg~~~~--~~~---------~~~g~~~w~~~~i~~i~v~~---G~~ 127 (152)
T 2xom_A 70 PAGVYRVGFWTHGEK---G-V----KIALKVSDYGGNERS--VEV---------ETTGWLEWKNPEIRNIKVET---GRI 127 (152)
T ss_dssp CSEEEEEEEEEEEST---T-C----EEEEEEESSSSCCEE--EEE---------ECCEEEEEECCEEEEEEECS---SEE
T ss_pred CCCeEEEEEEEEcCC---C-c----eEEEEEecCCCcEEE--EEc---------cCCCCCcccEEEEeEEEEeC---CeE
Confidence 667899988888753 3 2 144444321 33332 222 11001357778888888854 467
Q ss_pred EEEEEE-EecCcccccEEEEEEEEEecC
Q 024822 235 VCSLLE-FDSYIAMRGLIIQGIELRPKS 261 (262)
Q Consensus 235 ~fsl~e-~~~~~wK~GLiv~GieIRPk~ 261 (262)
+++++- -..++| +-|+-+++.+.+
T Consensus 128 ~Ig~~~~~~~g~W---~~iDd~~L~~~e 152 (152)
T 2xom_A 128 KITVSVEGRAGDW---GFIDDFYLFREE 152 (152)
T ss_dssp EEEEEEEECTTCE---EEEEEEEEEEC-
T ss_pred EEEEEEEcCCCCe---EEEEEEEEEEcC
Confidence 777753 335666 789999987753
No 17
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}
Probab=26.33 E-value=77 Score=22.01 Aligned_cols=35 Identities=11% Similarity=0.016 Sum_probs=21.5
Q ss_pred EeccccCCCceeEEEEEEEeccccCCCCccCEEEE
Q 024822 149 IETKILSLRANYGAYLVFKFAESRSGFERRPVISR 183 (262)
Q Consensus 149 i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~ 183 (262)
+.-.-|.|+|.|.+.+.-.-..+..-....|+.+.
T Consensus 60 ~~l~~L~p~t~Y~v~V~A~~~~G~gp~ss~p~~~~ 94 (97)
T 3qht_C 60 ATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSIN 94 (97)
T ss_dssp EEECSCCTTCEEEEEEEEEEEETTEEEECSCEEEE
T ss_pred EEeCCCCCCCEEEEEEEEEeCCccCCCCCCCEEEe
Confidence 44456999999998776554443222334666554
No 18
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Probab=23.45 E-value=1.1e+02 Score=21.75 Aligned_cols=33 Identities=9% Similarity=-0.117 Sum_probs=21.1
Q ss_pred EeccccCCCceeEEEEEEEeccccCCCCccCEEE
Q 024822 149 IETKILSLRANYGAYLVFKFAESRSGFERRPVIS 182 (262)
Q Consensus 149 i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~ 182 (262)
+...-|.|+|.|.+.++-+-..+.--| ..++.+
T Consensus 64 ~~i~~L~p~t~Y~f~V~A~~~~G~g~~-S~~~~~ 96 (107)
T 1x5a_A 64 VLLTKLQPDTTYIVRVRTLTPLGPGPF-SPDHEF 96 (107)
T ss_dssp EEEESCCSSCEEEEEEEEECSSSCCCC-CCCEEE
T ss_pred EEECCCCCCCEEEEEEEEECCCccCCC-CCCEEE
Confidence 555679999999987776655433223 355554
No 19
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=22.36 E-value=1.1e+02 Score=24.33 Aligned_cols=35 Identities=9% Similarity=-0.052 Sum_probs=22.2
Q ss_pred eccccCCCceeEEEEEEEeccccCCCCccCEEEEEE
Q 024822 150 ETKILSLRANYGAYLVFKFAESRSGFERRPVISRVY 185 (262)
Q Consensus 150 ~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~ 185 (262)
.-.-|.|+|.|.+.+.-.-.. -.|=.+.|+.++..
T Consensus 160 ~l~gL~p~t~Y~~~V~A~~~~-G~g~~S~~v~~~~~ 194 (195)
T 2qbw_A 160 TISGLKPGVDYTITVYAYSDY-YGSHHYSPISINYR 194 (195)
T ss_dssp EECSCCTTCEEEEEEEEESST-TSSCBCCCEEEEEE
T ss_pred EeCCCCCCCEEEEEEEEEeCC-ccCCCCCCEEEEee
Confidence 335589999999876655444 23433577776643
No 20
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens}
Probab=21.90 E-value=1.3e+02 Score=21.75 Aligned_cols=34 Identities=15% Similarity=-0.005 Sum_probs=23.2
Q ss_pred EeccccCCCceeEEEEEEEeccccCCCCccCEEEEEEE
Q 024822 149 IETKILSLRANYGAYLVFKFAESRSGFERRPVISRVYI 186 (262)
Q Consensus 149 i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~ 186 (262)
+.-.-|.|||.|.+.++-. .+ |-+..|..+.+..
T Consensus 61 ~~i~gL~PgT~Y~~~V~A~-~~---~~~~~p~~~~~~T 94 (104)
T 2dle_A 61 AVIPGLRSSTFYNITVCPV-LG---DIEGTPGFLQVHT 94 (104)
T ss_dssp EECCSCCSSCEEEEEEEEE-SS---SCCCBCEEEEEEC
T ss_pred EEECCCCCCCEEEEEEEEE-EC---CcccCCeeEEEEc
Confidence 4445699999999977665 22 4455777776654
No 21
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=21.63 E-value=20 Score=20.54 Aligned_cols=10 Identities=0% Similarity=-0.044 Sum_probs=6.6
Q ss_pred ceeeecCCCC
Q 024822 110 LSIAGADEPY 119 (262)
Q Consensus 110 L~ItWgd~~~ 119 (262)
|.|+|.++|+
T Consensus 17 lDiIWvntp~ 26 (26)
T 2lde_A 17 KDVIWVNRNX 26 (26)
T ss_dssp TTCSTTTCC-
T ss_pred ccEEEecCCC
Confidence 6777877764
No 22
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}
Probab=21.43 E-value=1.7e+02 Score=20.28 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=24.4
Q ss_pred EeccccCCCceeEEEEEEEeccccCCCCccCEEEEEEEec
Q 024822 149 IETKILSLRANYGAYLVFKFAESRSGFERRPVISRVYIEG 188 (262)
Q Consensus 149 i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~ 188 (262)
+...-|.|+|.|.+.+.-.-. .|.. .|+..+..+.-
T Consensus 57 ~~i~~L~p~t~Y~~~V~A~n~---~g~s-~p~~~~~~~~~ 92 (100)
T 3b83_A 57 LTLTNLEPNTTYEIRIVARNG---QQYS-PPVSTTFTTGS 92 (100)
T ss_dssp EEECSCCTTCEEEEEEEEEET---TEEC-CCEEEEEECCC
T ss_pred EEECCCCCCCEEEEEEEEEeC---CCCC-CCEEEEEEEEe
Confidence 334569999999987765433 3665 78777766643
No 23
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A
Probab=21.25 E-value=1.4e+02 Score=20.89 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=22.8
Q ss_pred EeccccCCCceeEEEEEEEeccccCCC--CccCEEEEEE
Q 024822 149 IETKILSLRANYGAYLVFKFAESRSGF--ERRPVISRVY 185 (262)
Q Consensus 149 i~~~~LSp~t~Y~ay~v~kl~~~~~Gw--~~~pv~~~v~ 185 (262)
+...-|.|+|.|.+.+.-.-.+. .|+ +..|+..+..
T Consensus 62 ~~l~~L~p~t~Y~~~V~A~~~~~-~~~~~~s~p~~~~~~ 99 (101)
T 3k2m_C 62 ATISGLSPGVDYTITVYAWGEDS-AGYMFMYSPISINYR 99 (101)
T ss_dssp EEECSCCTTCEEEEEEEEEEECT-TSCEEECBCEEEEEE
T ss_pred EEECCCCCCCEEEEEEEEEeCCc-cceeecCCCEEEEee
Confidence 34456999999998776555442 222 2578776654
Done!