Query 024824
Match_columns 262
No_of_seqs 130 out of 1109
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:41:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06899 lectin_legume_LecRK_Ar 100.0 7.6E-58 1.6E-62 401.4 26.7 227 22-262 1-234 (236)
2 PF00139 Lectin_legB: Legume l 100.0 6.7E-57 1.4E-61 395.4 24.4 229 21-261 1-236 (236)
3 cd01951 lectin_L-type legume l 100.0 4.5E-44 9.7E-49 311.3 25.2 203 31-262 13-223 (223)
4 cd07308 lectin_leg-like legume 100.0 1.4E-28 3.1E-33 213.4 23.8 194 32-261 20-216 (218)
5 cd06902 lectin_ERGIC-53_ERGL E 100.0 9.8E-27 2.1E-31 202.6 24.5 198 32-261 22-222 (225)
6 cd06901 lectin_VIP36_VIPL VIP3 100.0 2.1E-26 4.6E-31 203.0 25.3 199 31-261 19-221 (248)
7 PF03388 Lectin_leg-like: Legu 99.9 5.6E-24 1.2E-28 186.0 23.9 200 32-260 22-225 (229)
8 cd06903 lectin_EMP46_EMP47 EMP 99.9 6.3E-23 1.4E-27 177.4 22.7 186 32-261 21-212 (215)
9 KOG3838 Mannose lectin ERGIC-5 99.9 7E-22 1.5E-26 178.8 17.8 193 34-259 56-251 (497)
10 KOG3839 Lectin VIP36, involved 99.9 1.1E-20 2.4E-25 168.4 15.5 196 32-260 72-272 (351)
11 cd06900 lectin_VcfQ VcfQ bacte 99.3 1.4E-09 3.1E-14 94.3 20.8 203 43-259 30-252 (255)
12 smart00282 LamG Laminin G doma 87.2 12 0.00026 28.9 12.7 27 188-214 57-83 (135)
13 cd00110 LamG Laminin G domain; 77.4 31 0.00068 26.7 12.8 26 189-214 76-101 (151)
14 KOG3514 Neurexin III-alpha [Si 66.9 42 0.00092 35.9 9.5 64 32-99 804-875 (1591)
15 PF12248 Methyltransf_FA: Farn 58.3 41 0.0009 25.3 6.1 47 190-244 49-95 (102)
16 PF02210 Laminin_G_2: Laminin 28.3 75 0.0016 23.5 3.4 26 189-214 50-75 (128)
17 PRK10894 lipopolysaccharide tr 22.1 1.1E+02 0.0025 25.4 3.6 20 33-52 47-66 (180)
18 PHA02104 hypothetical protein 21.3 69 0.0015 22.9 1.7 18 190-207 55-72 (89)
No 1
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=100.00 E-value=7.6e-58 Score=401.40 Aligned_cols=227 Identities=45% Similarity=0.759 Sum_probs=202.4
Q ss_pred eeEEeCCCCC--CCeEEEeceEEe-CCeEEeCCCC--CCcEEEEEeCCceecccCCCCCeeeeEEEEEEEEecCCCCCCC
Q 024824 22 LKFAFDGFNT--SKLLLYGNAKLD-SGAISLTQDT--TFSIGRALYHAKIPLKHTNSSTIRSFETSFTFSITPYNGQRPG 96 (262)
Q Consensus 22 ~~f~~~~F~~--~~~~l~G~A~i~-~~~i~LT~~~--~~~~G~~~y~~pi~l~~~~~~~~~sFst~F~F~I~~~~~~~~g 96 (262)
++|+|++|.. ++|.|+|+|.+. ++.||||++. ++++|||||++||+||++.+++++||+|+|+|+|.++....+|
T Consensus 1 ~~f~f~~f~~~~~~l~l~G~A~~~~~~~i~LT~~~~~~~~~G~v~y~~pi~l~~~~~~~~~sFst~F~F~i~~~~~~~~g 80 (236)
T cd06899 1 LSFNFNGFSSDQSNLTLQGDATISSNGALQLTNDTSPASSVGRALYSKPVRLWDSTTGKVASFSTSFSFSITPPNPSLGG 80 (236)
T ss_pred CceecCCCCCCCCCEEEecceEcCCCCeEEecCCCCCCcceEEEEeCCCEEeecCCCCCceeEEEEEEEEEEcCCCCCCC
Confidence 4799999986 799999999997 9999999998 8999999999999999999999999999999999987656789
Q ss_pred cceEEEEeeCCCCCCCCCCCccCCCCcCCCCCCCCcEEEEEEeeeccccccCCCCCeeEEEcCCccccceeecceeecCC
Q 024824 97 HGLVFIFVPSADIQGAAASQYLGFLNRTNDGNRNNNVFGIEFDIVQNQEFYDINNNHVGLNVNSIISVTAYKAGYWFQDN 176 (262)
Q Consensus 97 dGlAF~l~~~~~~~~~~~G~~lGl~~~~~~~~~~~~~~AVEFDT~~N~~~~Dp~~~HIgi~~ns~~s~~~~~~~~~~~~~ 176 (262)
|||||||+|....+.+..|++||+.+..+.+.+.++.+|||||||+|.+++||+.+||||++|++.|..+.. |..
T Consensus 81 dGlAF~i~~~~~~~~~~~G~~lG~~~~~~~~~~~~~~vAVEFDT~~n~~~~D~~~nHigIdvn~~~S~~~~~---~~~-- 155 (236)
T cd06899 81 DGLAFFLAPTDSLPPASSGGYLGLFNSSNNGNSSNHIVAVEFDTFQNPEFGDPDDNHVGIDVNSLVSVKAGY---WDD-- 155 (236)
T ss_pred CeEEEEEecCCCCCCCCCcceeeeecCCCCCCcccceEEEEeecccCcccCCCCCCeEEEEcCCcccceeec---ccc--
Confidence 999999999875444678999999988766666789999999999999888999999999999987665532 432
Q ss_pred CCCcccceeeeeeecCCceEEEEEEEe--CCeeEEEEEeCCCCCCCCceEEEEecCCCCCCCcEEEEEEeeccCcccceE
Q 024824 177 QNKTNWWHFHALKLNNGKIYRVWIDYK--DSFLGVSIAPAKMKKPLWPLLNVFIDLSDFFLDEMYAGFCAATGQLIGNHK 254 (262)
Q Consensus 177 g~~~~~~~~~~~~l~~G~~~~v~I~Y~--~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~~~~vGFSAsTG~~~~~h~ 254 (262)
..+.|.+|+.++|||+|+ +++|+|+|+..+..+|..|++++.+||+.+|+++|||||||+||+..|.|+
T Consensus 156 ---------~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~~~~vGFSasTG~~~~~h~ 226 (236)
T cd06899 156 ---------DGGKLKSGKPMQAWIDYDSSSKRLSVTLAYSGVAKPKKPLLSYPVDLSKVLPEEVYVGFSASTGLLTELHY 226 (236)
T ss_pred ---------ccccccCCCeEEEEEEEcCCCCEEEEEEEeCCCCCCcCCEEEEeccHHHhCCCceEEEEEeEcCCCcceEE
Confidence 233478999999999994 799999999877668889999999999999999999999999999999999
Q ss_pred EEEEEEeC
Q 024824 255 ILSWSFSN 262 (262)
Q Consensus 255 I~sWsF~~ 262 (262)
|++|+|++
T Consensus 227 i~sWsF~s 234 (236)
T cd06899 227 ILSWSFSS 234 (236)
T ss_pred EEEEEEEc
Confidence 99999985
No 2
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=100.00 E-value=6.7e-57 Score=395.40 Aligned_cols=229 Identities=40% Similarity=0.719 Sum_probs=198.5
Q ss_pred ceeEEeCCC-CCCCeEEEeceEE-eCCeEEeCCCCC-CcEEEEEeCCceecccCCCCCeeeeEEEEEEEEecC--CCCCC
Q 024824 21 ALKFAFDGF-NTSKLLLYGNAKL-DSGAISLTQDTT-FSIGRALYHAKIPLKHTNSSTIRSFETSFTFSITPY--NGQRP 95 (262)
Q Consensus 21 ~~~f~~~~F-~~~~~~l~G~A~i-~~~~i~LT~~~~-~~~G~~~y~~pi~l~~~~~~~~~sFst~F~F~I~~~--~~~~~ 95 (262)
.++|+|+.| +.+++.|.|+|.+ .+++||||++.. +|+|||||++||+||++.++.+++|+|+|+|+|... ....+
T Consensus 1 ~~~F~~~~F~~~~~~~l~G~A~~~~~~~l~LT~~~~~~~~G~~~y~~pi~l~d~~~~~~~sF~t~F~f~i~~~~~~~~~~ 80 (236)
T PF00139_consen 1 SVSFSFPSFSNSSNLTLNGDASISSNGSLQLTPDSTNNQAGRAWYNNPIQLWDSTTGNVASFSTSFSFSITNGPGSSNNG 80 (236)
T ss_dssp EEEEEESSBTTGTTEEEEETEEEETTSEEESSTBETSSEEEEEEESSEEESBETTTTEBEEEEEEEEEEEEESSSSSSS-
T ss_pred CceEEcCCCCCCCceEEEeeEEeccCCeEEcCCCCCCCcEEEEEECCcEEEeCCCCcceeeeeeEEEEEEeccCCCCccC
Confidence 378999999 4689999999999 799999999988 999999999999999999999999999999999642 35578
Q ss_pred CcceEEEEeeCCCCCCCCCCCccCCCCcCCCCCCCCcEEEEEEeeeccccccCCCCCeeEEEcCCccccceeecceeecC
Q 024824 96 GHGLVFIFVPSADIQGAAASQYLGFLNRTNDGNRNNNVFGIEFDIVQNQEFYDINNNHVGLNVNSIISVTAYKAGYWFQD 175 (262)
Q Consensus 96 gdGlAF~l~~~~~~~~~~~G~~lGl~~~~~~~~~~~~~~AVEFDT~~N~~~~Dp~~~HIgi~~ns~~s~~~~~~~~~~~~ 175 (262)
||||||+|+|....+.+..|++||+.+..+++...++.+|||||||+|++++||+.+||||++|++.+..+.++.++.
T Consensus 81 ~dGlAFvi~~~~~~~~~~~g~~lG~~~~~~~~~~~~~~vAVEFDT~~N~~~~d~~~nHIgI~~n~~~s~~~~~~~~~~-- 158 (236)
T PF00139_consen 81 GDGLAFVIQPDPNLPGGSSGGYLGLFNSSTDGNGINNSVAVEFDTYKNPEYNDPDDNHIGIDVNSVVSNKTASAGYYS-- 158 (236)
T ss_dssp BEEEEEEEEETTSSTTTSSGGGTTTSSSSSTTGGGGCEEEEEEETSTCGGGTTTSSSEEEEEESSSSESEEEE----E--
T ss_pred CCceEEEEecCcccccCCCCCccCccccccCCCccCcEEEEEEeeeecccccccCCCEEEEECCCCcccccccccccc--
Confidence 999999999998655567899999988766665578999999999999999999999999999999888776544331
Q ss_pred CCCCcccceeeeeeecCCceEEEEEEEe--CCeeEEEEEeCCCCCCCCceEEEEecCCCCCCCcEEEEEEeeccCcccce
Q 024824 176 NQNKTNWWHFHALKLNNGKIYRVWIDYK--DSFLGVSIAPAKMKKPLWPLLNVFIDLSDFFLDEMYAGFCAATGQLIGNH 253 (262)
Q Consensus 176 ~g~~~~~~~~~~~~l~~G~~~~v~I~Y~--~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~~~~vGFSAsTG~~~~~h 253 (262)
....++.+|+.++|||+|+ .++|+|+++... .+|..|++++.+||+.+++++||||||||||...|.|
T Consensus 159 ---------~~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~~~-~~~~~~~l~~~vdL~~~l~~~v~vGFsasTG~~~~~h 228 (236)
T PF00139_consen 159 ---------SPSFSLSDGKWHTVWIDYDASTKRLSVYLDDNS-SKPSSPVLSVNVDLSAVLPEQVYVGFSASTGGSYQTH 228 (236)
T ss_dssp ---------EEEHHHGTTSEEEEEEEEETTTTEEEEEEEETT-TTSEEEEEEEE--HHHHSCSEEEEEEEEEESSSSEEE
T ss_pred ---------cccccccCCcEEEEEEEEcCCccEEEEEEeccc-CCCcceeEEEEEchHHhcCCCcEEEEEeecCCCcceE
Confidence 2355688999999999994 589999999874 5788899999999999999999999999999999999
Q ss_pred EEEEEEEe
Q 024824 254 KILSWSFS 261 (262)
Q Consensus 254 ~I~sWsF~ 261 (262)
+|++|+|+
T Consensus 229 ~I~sW~F~ 236 (236)
T PF00139_consen 229 DILSWSFS 236 (236)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEeC
Confidence 99999996
No 3
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=100.00 E-value=4.5e-44 Score=311.26 Aligned_cols=203 Identities=29% Similarity=0.382 Sum_probs=167.7
Q ss_pred CCCeEEEeceEEe--CCeEEeCCCCCCcEEEEEeCCceecccCCCCCeeeeEEEEEEEEecCCCCCCCcceEEEEeeCCC
Q 024824 31 TSKLLLYGNAKLD--SGAISLTQDTTFSIGRALYHAKIPLKHTNSSTIRSFETSFTFSITPYNGQRPGHGLVFIFVPSAD 108 (262)
Q Consensus 31 ~~~~~l~G~A~i~--~~~i~LT~~~~~~~G~~~y~~pi~l~~~~~~~~~sFst~F~F~I~~~~~~~~gdGlAF~l~~~~~ 108 (262)
..+|.++|+|.+. ++.||||++..+|+|+|||++||++| ++|+|+|+|+|.+.. ..+||||||||+|...
T Consensus 13 ~~~~~~~G~A~~~~~~~~l~Lt~~~~~~~G~~~~~~~i~~~-------~~F~~~F~f~i~~~~-~~~gdG~aF~l~~~~~ 84 (223)
T cd01951 13 QSNWQLNGSATLTTDSGVLRLTPDTGNQAGSAWYKTPIDLS-------KDFTTTFKFYLGTKG-TNGADGIAFVLQNDPA 84 (223)
T ss_pred hhhcEEcccEEecCCCCEEEECCCCCCcEEEEEECCcEecc-------CCEEEEEEEEEeCCC-CCCCCcEEEEEecCCC
Confidence 4689999999996 89999999999999999999999997 689999999999864 4689999999999874
Q ss_pred CCCCCCC--CccCCCCcCCCCCCCCcEEEEEEeeeccccccCCCCCeeEEEcCCccccc--eeecceeecCCCCCcccce
Q 024824 109 IQGAAAS--QYLGFLNRTNDGNRNNNVFGIEFDIVQNQEFYDINNNHVGLNVNSIISVT--AYKAGYWFQDNQNKTNWWH 184 (262)
Q Consensus 109 ~~~~~~G--~~lGl~~~~~~~~~~~~~~AVEFDT~~N~~~~Dp~~~HIgi~~ns~~s~~--~~~~~~~~~~~g~~~~~~~ 184 (262)
.+.+..| ++||+.+ ..+.+|||||||+|.+.+||+.+||+|++|+..+.. ......+..
T Consensus 85 ~~~~~~g~~~~lG~~~-------~~~~~aVefDT~~N~~~~dp~~~higi~~n~~~~~~~~~~~~~~~~~---------- 147 (223)
T cd01951 85 GALGGGGGGGGLGYGG-------IGNSVAVEFDTYKNDDNNDPNGNHISIDVNGNGNNTALATSLGSASL---------- 147 (223)
T ss_pred CccccCCCCCccCccc-------cCCeEEEEEeccccCCCCCCCCCEEEEEcCCCCCCcccccccceeeC----------
Confidence 4434444 7888754 378999999999999888999999999999876431 111111110
Q ss_pred eeeeeecCCceEEEEEEEe--CCeeEEEEEeCCCCCCCCceEEEEecCCCCCCCcEEEEEEeeccCcccceEEEEEEEeC
Q 024824 185 FHALKLNNGKIYRVWIDYK--DSFLGVSIAPAKMKKPLWPLLNVFIDLSDFFLDEMYAGFCAATGQLIGNHKILSWSFSN 262 (262)
Q Consensus 185 ~~~~~l~~G~~~~v~I~Y~--~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~~~~vGFSAsTG~~~~~h~I~sWsF~~ 262 (262)
+....+|+.++|||+|+ +++|+|+|+.... |..++++..+||...++++||||||||||...|.|+|++|+|+.
T Consensus 148 --~~~~~~g~~~~v~I~Y~~~~~~L~v~l~~~~~--~~~~~l~~~~~l~~~~~~~~yvGFTAsTG~~~~~h~V~~wsf~~ 223 (223)
T cd01951 148 --PNGTGLGNEHTVRITYDPTTNTLTVYLDNGST--LTSLDITIPVDLIQLGPTKAYFGFTASTGGLTNLHDILNWSFTS 223 (223)
T ss_pred --CCccCCCCEEEEEEEEeCCCCEEEEEECCCCc--cccccEEEeeeecccCCCcEEEEEEcccCCCcceeEEEEEEecC
Confidence 11122389999999995 7999999986543 67789999999999999999999999999999999999999974
No 4
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47. The legume-like (leg-like) lectins are eukaryotic intracellular sugar transport proteins with a carbohydrate recognition domain similar to that of the legume lectins. This domain binds high-mannose-type oligosaccharides for transport from the endoplasmic reticulum to the Golgi complex. These leg-like lectins include ERGIC-53, ERGL, VIP36, VIPL, EMP46, EMP47, and the UIP5 (ULP1-interacting protein 5) precursor protein. Leg-like lectins have different intracellular distributions and dynamics in the endoplasmic reticulum-Golgi system of the secretory pathway and interact with N-glycans of glycoproteins in a calcium-dependent manner, suggesting a role in glycoprotein sorting and trafficking. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "ba
Probab=99.97 E-value=1.4e-28 Score=213.37 Aligned_cols=194 Identities=22% Similarity=0.225 Sum_probs=141.1
Q ss_pred CCeEEEeceEEeCCeEEeCCCCCCcEEEEEeCCceecccCCCCCeeeeEEEEEEEEecCCCCCCCcceEEEEeeCCCCCC
Q 024824 32 SKLLLYGNAKLDSGAISLTQDTTFSIGRALYHAKIPLKHTNSSTIRSFETSFTFSITPYNGQRPGHGLVFIFVPSADIQG 111 (262)
Q Consensus 32 ~~~~l~G~A~i~~~~i~LT~~~~~~~G~~~y~~pi~l~~~~~~~~~sFst~F~F~I~~~~~~~~gdGlAF~l~~~~~~~~ 111 (262)
.+|.+.|+|.+.++.||||++.+++.|++||+.|+++ .+|+++|+|+|.+.. ..+||||||||++...
T Consensus 20 ~~w~~~G~a~~~~~~i~LT~~~~~~~G~~~~~~pi~~--------~~F~~~f~F~i~~~~-~~~gdG~af~~~~~~~--- 87 (218)
T cd07308 20 GNWTVGGSTVITKNYIRLTPDVPSQSGSLWSRVPIPA--------KDFEIEVEFSIHGGS-GLGGDGFAFWYTEEPG--- 87 (218)
T ss_pred CCeEEcCCeEEeCCEEEeCCCCCCCEeEEEeCCCccC--------CCEEEEEEEEEeCCC-CCCCCEEEEEEECCCC---
Confidence 5899999999999999999999999999999999997 489999999998763 4689999999999653
Q ss_pred CCCCCccCCCCcCCCCCCCCcEEEEEEeeeccccccCCCCCeeEEEcCCcc-ccceeecceeecCCCC-Ccccceeeeee
Q 024824 112 AAASQYLGFLNRTNDGNRNNNVFGIEFDIVQNQEFYDINNNHVGLNVNSII-SVTAYKAGYWFQDNQN-KTNWWHFHALK 189 (262)
Q Consensus 112 ~~~G~~lGl~~~~~~~~~~~~~~AVEFDT~~N~~~~Dp~~~HIgi~~ns~~-s~~~~~~~~~~~~~g~-~~~~~~~~~~~ 189 (262)
..|+.+|..+ ..+++||||||++|. +...++|.+.+|... +... ..++. .+...+.-+.
T Consensus 88 -~~g~~~G~~~-------~~~Glai~fdt~~n~---~~~~p~i~~~~Ndg~~~~~~-------~~d~~~~~~~~c~~~~- 148 (218)
T cd07308 88 -SDGPLFGGPD-------KFKGLAIFFDTYDND---GKGFPSISVFLNDGTKSYDY-------ETDGEKLELASCSLKF- 148 (218)
T ss_pred -CCCcccccCC-------CCCEEEEEEEcCCCC---CCCCCeEEEEEeCCCceecc-------cCCCccccccceeEec-
Confidence 2455677654 378999999999985 334567777766432 1110 00000 0000111111
Q ss_pred ecCCceEEEEEEEeCCeeEEEEEeCCCCCCCCceEEEEecCCC-CCCCcEEEEEEeeccCcccceEEEEEEEe
Q 024824 190 LNNGKIYRVWIDYKDSFLGVSIAPAKMKKPLWPLLNVFIDLSD-FFLDEMYAGFCAATGQLIGNHKILSWSFS 261 (262)
Q Consensus 190 l~~G~~~~v~I~Y~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~-~l~~~~~vGFSAsTG~~~~~h~I~sWsF~ 261 (262)
...+.+.+++|+|..+.|.|.+..... .. ...+. ++.. .+|+++|+||||+||+..+.|+|++|.+.
T Consensus 149 ~~~~~~~~~~I~y~~~~l~v~i~~~~~-~~--~~~c~--~~~~~~l~~~~y~G~sA~tg~~~d~~dIls~~~~ 216 (218)
T cd07308 149 RNSNAPTTLRISYLNNTLKVDITYSEG-NN--WKECF--TVEDVILPSQGYFGFSAQTGDLSDNHDILSVHTY 216 (218)
T ss_pred ccCCCCeEEEEEEECCEEEEEEeCCCC-CC--ccEEE--EcCCcccCCCCEEEEEeccCCCcCcEEEEEEEee
Confidence 112578999999998999999985422 12 22333 3333 46789999999999999999999999874
No 5
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=99.96 E-value=9.8e-27 Score=202.61 Aligned_cols=198 Identities=20% Similarity=0.196 Sum_probs=145.7
Q ss_pred CCeEEEeceEEeCCeEEeCCCCCCcEEEEEeCCceecccCCCCCeeeeEEEEEEEEecCCCCCCCcceEEEEeeCCCCCC
Q 024824 32 SKLLLYGNAKLDSGAISLTQDTTFSIGRALYHAKIPLKHTNSSTIRSFETSFTFSITPYNGQRPGHGLVFIFVPSADIQG 111 (262)
Q Consensus 32 ~~~~l~G~A~i~~~~i~LT~~~~~~~G~~~y~~pi~l~~~~~~~~~sFst~F~F~I~~~~~~~~gdGlAF~l~~~~~~~~ 111 (262)
..|.+.|+|.+.++.|||||+.+++.|.+|.+.|++. .+|+++|+|+|++.+ ..+|||||||++....
T Consensus 22 ~~W~~~G~t~~~~~~IrLTp~~~~~~G~iw~~~~~~~--------~~w~ie~~Fri~g~~-~~~gdG~a~W~t~~~~--- 89 (225)
T cd06902 22 PFWSHGGDAIASLEQVRLTPSLRSKKGSVWTKNPFSF--------ENWEVEVTFRVTGRG-RIGADGLAIWYTKERG--- 89 (225)
T ss_pred CceEecccEEecCCEEEECCCCCCCEEEEeeCCCcCC--------CCEEEEEEEEEecCC-CCCCCEEEEEEECCCC---
Confidence 5799999999999999999999999999999999984 479999999999864 3578999999998752
Q ss_pred CCCCCccCCCCcCCCCCCCCcEEEEEEeeeccccccCCCCCeeEEEcCCccccceeecceeec-CCCCCc-ccceeeeee
Q 024824 112 AAASQYLGFLNRTNDGNRNNNVFGIEFDIVQNQEFYDINNNHVGLNVNSIISVTAYKAGYWFQ-DNQNKT-NWWHFHALK 189 (262)
Q Consensus 112 ~~~G~~lGl~~~~~~~~~~~~~~AVEFDT~~N~~~~Dp~~~HIgi~~ns~~s~~~~~~~~~~~-~~g~~~-~~~~~~~~~ 189 (262)
..|+.+|..++ ..++||+|||+.|.+ ....+.|.+..|... +. ++. .||... +..|.-.+
T Consensus 90 -~~G~~~G~~~~-------f~Gl~I~~Dt~~n~~--~~~~p~i~~~~NDGt--~~-----yd~~~D~~~~~~~~C~~~~- 151 (225)
T cd06902 90 -EEGPVFGSSDK-------WNGVGIFFDSFDNDG--KKNNPAILVVGNDGT--KS-----YDHQNDGLTQALGSCLRDF- 151 (225)
T ss_pred -CCCCccCCCCc-------ccEEEEEEECCCCCC--CCCCcEEEEEECCCC--ee-----ccccCCCcccccceEEEec-
Confidence 24677887664 789999999998853 234567877776431 11 211 222111 11222111
Q ss_pred ecCCceEEEEEEEeCCeeEEEEEeCCCCCCCCceEEEEecCCCC-CCCcEEEEEEeeccCcccceEEEEEEEe
Q 024824 190 LNNGKIYRVWIDYKDSFLGVSIAPAKMKKPLWPLLNVFIDLSDF-FLDEMYAGFCAATGQLIGNHKILSWSFS 261 (262)
Q Consensus 190 l~~G~~~~v~I~Y~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~-l~~~~~vGFSAsTG~~~~~h~I~sWsF~ 261 (262)
.+...+.+++|+|....|+|.++.... +.......++++..+ ||...|+||||+||++.+.|+|++|++.
T Consensus 152 rn~~~p~~~rI~Y~~~~l~V~~d~~~~--~~~~~~~~Cf~~~~v~LP~~~yfGiSA~Tg~l~d~hDIls~~~~ 222 (225)
T cd06902 152 RNKPYPVRAKITYYQNVLTVSINNGFT--PNKDDYELCTRVENMVLPPNGYFGVSAATGGLADDHDVLSFLTF 222 (225)
T ss_pred cCCCCCeEEEEEEECCeEEEEEeCCcC--CCCCcccEEEecCCeeCCCCCEEEEEecCCCCCCcEeEEEEEEe
Confidence 233468899999987889999984322 222234445555554 7889999999999999999999999985
No 6
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=99.95 E-value=2.1e-26 Score=203.01 Aligned_cols=199 Identities=20% Similarity=0.172 Sum_probs=142.8
Q ss_pred CCCeEEEeceEEeCCeEEeCCCCCCcEEEEEeCCceecccCCCCCeeeeEEEEEEEEecCCCCCCCcceEEEEeeCCCCC
Q 024824 31 TSKLLLYGNAKLDSGAISLTQDTTFSIGRALYHAKIPLKHTNSSTIRSFETSFTFSITPYNGQRPGHGLVFIFVPSADIQ 110 (262)
Q Consensus 31 ~~~~~l~G~A~i~~~~i~LT~~~~~~~G~~~y~~pi~l~~~~~~~~~sFst~F~F~I~~~~~~~~gdGlAF~l~~~~~~~ 110 (262)
..+|.+.|+|.+.++.||||++.+++.|++||+.|+++ .+|+++|+|+|.+.+...+|||||||++.+..
T Consensus 19 i~~w~~~G~a~v~~~~IrLTp~~~~~~G~~w~~~p~~~--------~~F~~~f~F~I~~~~~~~~GdGlAfw~t~~~~-- 88 (248)
T cd06901 19 MPLWDFLGSTMVTSQYIRLTPDHQSKQGSIWNRVPCYL--------RDWEMHVHFKVHGSGKNLFGDGFAIWYTKERM-- 88 (248)
T ss_pred CCCEEEcceEEEcCCeEEECCCCCCCEEEEeccCCccC--------CCEEEEEEEEEeCCCCCCCCCEEEEEEEcCCC--
Confidence 46899999999988899999999999999999999998 47999999999987656789999999998752
Q ss_pred CCCCCCccCCCCcCCCCCCCCcEEEEEEeeeccccc-cCCCCCeeEEEcCCccccceeecceeec-CCCCCc-ccceeee
Q 024824 111 GAAASQYLGFLNRTNDGNRNNNVFGIEFDIVQNQEF-YDINNNHVGLNVNSIISVTAYKAGYWFQ-DNQNKT-NWWHFHA 187 (262)
Q Consensus 111 ~~~~G~~lGl~~~~~~~~~~~~~~AVEFDT~~N~~~-~Dp~~~HIgi~~ns~~s~~~~~~~~~~~-~~g~~~-~~~~~~~ 187 (262)
..|+.+|..++ .+++||.|||+.|.+- -....+-|.+.+|... .. |+. .||..+ +..|...
T Consensus 89 --~~G~~fG~~~~-------f~Gl~I~~Dt~~n~~~~~~~~~P~i~~~~NDGt-~~------yd~~~Dg~~~~~~~C~~~ 152 (248)
T cd06901 89 --QPGPVFGSKDN-------FHGLAIFFDTYSNQNGEHEHVHPYISAMVNNGS-LS------YDHDRDGTHTELAGCSAP 152 (248)
T ss_pred --ccCcccccCCC-------CceEEEEEECCCCCCCcccCCCceEEEEEcCCC-ee------ecccCCCchhhcCceeee
Confidence 34566776553 7899999999998631 0123445666655421 11 221 222111 2222222
Q ss_pred eeecCCceEEEEEEEeCCeeEEEEEeCCCCCCCCceEEEEecCCCC-CCCcEEEEEEeeccCcccceEEEEEEEe
Q 024824 188 LKLNNGKIYRVWIDYKDSFLGVSIAPAKMKKPLWPLLNVFIDLSDF-FLDEMYAGFCAATGQLIGNHKILSWSFS 261 (262)
Q Consensus 188 ~~l~~G~~~~v~I~Y~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~-l~~~~~vGFSAsTG~~~~~h~I~sWsF~ 261 (262)
+ .+.+.+.+++|.|....|+|.++..+... +..| .+...+ ||...|+||||+||+..++|+|++..+.
T Consensus 153 ~-rn~~~~t~~rI~Y~~~~l~v~vd~~~~~~-w~~C----f~~~~v~LP~~~yfGiSA~Tg~~sd~hdIlsv~~~ 221 (248)
T cd06901 153 F-RNKDHDTFVAIRYSKGRLTVMTDIDGKNE-WKEC----FDVTGVRLPTGYYFGASAATGDLSDNHDIISMKLY 221 (248)
T ss_pred c-cCCCCCeEEEEEEECCeEEEEEecCCCCc-eeee----EEeCCeecCCCCEEEEEecCCCCCCcEEEEEEEEe
Confidence 2 23456688999997778999988543222 2233 333343 7888999999999999999999998763
No 7
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=99.93 E-value=5.6e-24 Score=186.00 Aligned_cols=200 Identities=22% Similarity=0.220 Sum_probs=135.5
Q ss_pred CCeEEEeceEEeCCeEEeCCCCCCcEEEEEeCCceecccCCCCCeeeeEEEEEEEEecCCCCCCCcceEEEEeeCCCCCC
Q 024824 32 SKLLLYGNAKLDSGAISLTQDTTFSIGRALYHAKIPLKHTNSSTIRSFETSFTFSITPYNGQRPGHGLVFIFVPSADIQG 111 (262)
Q Consensus 32 ~~~~l~G~A~i~~~~i~LT~~~~~~~G~~~y~~pi~l~~~~~~~~~sFst~F~F~I~~~~~~~~gdGlAF~l~~~~~~~~ 111 (262)
..|.+.|+|.+.++.||||++.+++.|.+|.+.|++. .+|+++|+|+|++.....+|||||||++....
T Consensus 22 ~~W~~~G~t~i~~~~IrLTp~~~~~~G~iws~~~~~~--------~~w~i~~~Fri~g~~~~~~g~G~a~W~t~~~~--- 90 (229)
T PF03388_consen 22 PNWDIGGSTVITDNFIRLTPDRQSQSGSIWSRKPIPF--------DNWEIEFTFRISGQEKGLGGDGMAFWYTKDPG--- 90 (229)
T ss_dssp TTEEEEET-EEESSEEEEE-SSTTEEEEEEESS-BEE--------SEEEEEEEEEEESS-SSS-S-EEEEEEESSSS---
T ss_pred CCEEECCeEEecCCEEEECCCcccCEEEEEEcCCCCc--------cCEEEEEEEEEeccccCcCCCeEEEEEEcCcc---
Confidence 4799999999999999999999999999999999997 37999999999997555689999999998653
Q ss_pred CCCCCccCCCCcCCCCCCCCcEEEEEEeeecccccc-CCCCCeeEEEcCCccccceeecceeecCCCCCc-ccceeeeee
Q 024824 112 AAASQYLGFLNRTNDGNRNNNVFGIEFDIVQNQEFY-DINNNHVGLNVNSIISVTAYKAGYWFQDNQNKT-NWWHFHALK 189 (262)
Q Consensus 112 ~~~G~~lGl~~~~~~~~~~~~~~AVEFDT~~N~~~~-Dp~~~HIgi~~ns~~s~~~~~~~~~~~~~g~~~-~~~~~~~~~ 189 (262)
..|+.+|..++ ..++||-||||.|.+.. ....+.|.+.+|... .. +-...+|... ...|...+
T Consensus 91 -~~G~~fG~~~~-------f~Gl~i~idt~~N~~~~~~~~~p~i~~~~NDGt-~~-----~~~~~dg~~~~~~~C~~~~- 155 (229)
T PF03388_consen 91 -SDGPVFGGPDK-------FDGLGIFIDTYDNDEGGHKRGFPYISAMLNDGT-KS-----YDHDNDGKDQSLGSCSADY- 155 (229)
T ss_dssp -SSCSBTTB-SS--------EEEEEEEEES-TTCTTCTSTSSEEEEEEEESS-S--------GGGTTTTT-SEEEE----
T ss_pred -ccccccCCCcc-------cceEEEEEEcccCCCcccccccceEEEEecCCC-cc-----ccccccCcccccccceecc-
Confidence 25677887653 78999999999996421 124567777776431 11 0111222111 11122111
Q ss_pred ecCCceEEEEEEEeCCeeEEEEEeCC--CCCCCCceEEEEecCCCCCCCcEEEEEEeeccCcccceEEEEEEE
Q 024824 190 LNNGKIYRVWIDYKDSFLGVSIAPAK--MKKPLWPLLNVFIDLSDFFLDEMYAGFCAATGQLIGNHKILSWSF 260 (262)
Q Consensus 190 l~~G~~~~v~I~Y~~~~L~V~l~~~~--~~~~~~~~ls~~vdL~~~l~~~~~vGFSAsTG~~~~~h~I~sWsF 260 (262)
.+.+.+.+++|.|..+.|+|.++... ....++.|+... .-.||+..|+||||+||++.++|+|++..-
T Consensus 156 rn~~~p~~~ri~Y~~~~l~v~id~~~~~~~~~~~~Cf~~~---~v~LP~~~yfGvSA~Tg~~~d~hdi~s~~~ 225 (229)
T PF03388_consen 156 RNSDVPTRIRISYSKNTLTVSIDSNYLKNQDDWELCFTTD---GVDLPEGYYFGVSAATGELSDNHDILSVKT 225 (229)
T ss_dssp BTESSEEEEEEEEETTEEEEEEETSCCSECCTTEEEEEES---TEEGGSSBEEEEEEEESSSGGEEEEEEEEE
T ss_pred CcCCCCEEEEEEEECCeEEEEEecccccCCcCCcEEEEcC---CeecCCCCEEEEEecCCCCCCcEEEEEEEE
Confidence 22356789999998889999998431 112233444431 113688899999999999999999999753
No 8
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=99.92 E-value=6.3e-23 Score=177.43 Aligned_cols=186 Identities=19% Similarity=0.175 Sum_probs=132.5
Q ss_pred CCeEEEeceEEeCCeEEeCCCCCCcEEEEEeCCceecccCCCCCeeeeEEEEEEEEecCCCCCCCcceEEEEeeCCCCCC
Q 024824 32 SKLLLYGNAKLDSGAISLTQDTTFSIGRALYHAKIPLKHTNSSTIRSFETSFTFSITPYNGQRPGHGLVFIFVPSADIQG 111 (262)
Q Consensus 32 ~~~~l~G~A~i~~~~i~LT~~~~~~~G~~~y~~pi~l~~~~~~~~~sFst~F~F~I~~~~~~~~gdGlAF~l~~~~~~~~ 111 (262)
..|.+.|+|.+.++.|||||+ ++|.|.+|.+.|+++. .+|+++|+|+|+++.. .+|||||||++..+...
T Consensus 21 ~~W~~~G~t~v~~~~IrLTp~-~s~~G~iWs~~pl~~~-------~~w~ie~~Fri~G~~~-~~gdGla~W~t~~~~~~- 90 (215)
T cd06903 21 PNWQTSGNPKLESGRIILTPP-GNQRGSLWLKKPLSLK-------DEWTIEWTFRSTGPEG-RSGGGLNFWLVKDGNAD- 90 (215)
T ss_pred CCeEEcCcEEeeCCeEEECCC-CCceEeEeeCCcCCCC-------CCEEEEEEEEecccCC-cCCCEEEEEEECCCccc-
Confidence 579999999999999999999 9999999999999874 2799999999998643 68999999999875321
Q ss_pred CCCC-CccCCCCcCCCCCCCCcEEEEEEeeeccccccCCCCCeeEEEcCCc-cccceeecceeecCCCCCcccceeeeee
Q 024824 112 AAAS-QYLGFLNRTNDGNRNNNVFGIEFDIVQNQEFYDINNNHVGLNVNSI-ISVTAYKAGYWFQDNQNKTNWWHFHALK 189 (262)
Q Consensus 112 ~~~G-~~lGl~~~~~~~~~~~~~~AVEFDT~~N~~~~Dp~~~HIgi~~ns~-~s~~~~~~~~~~~~~g~~~~~~~~~~~~ 189 (262)
.| +.+|-.+. ..++||.|||+.|.. ..|.+.+|.. ...... .|-...+..|.-. .
T Consensus 91 --~g~~~fG~~~~-------f~Gl~I~~Dt~~n~~------p~i~~~~NDGt~~yd~~-------~d~~~~~g~C~~~-~ 147 (215)
T cd06903 91 --VGTSSIYGPSK-------FDGLQLLIDNNGGSG------GSLRGFLNDGSKDYKNE-------DVDSLAFGSCLFA-Y 147 (215)
T ss_pred --CCccccCCCCC-------CcEEEEEEECCCCCC------ceEEEEECCCCeecccc-------CCcccccceeeEe-c
Confidence 22 55665543 789999999998731 3455555432 111111 1000011112212 2
Q ss_pred ecCCceEEEEEEEeC--CeeEEEEEeCCCCCCCCceEEEEecCCCC-CC-CcEEEEEEeeccCcccceEEEEEEEe
Q 024824 190 LNNGKIYRVWIDYKD--SFLGVSIAPAKMKKPLWPLLNVFIDLSDF-FL-DEMYAGFCAATGQLIGNHKILSWSFS 261 (262)
Q Consensus 190 l~~G~~~~v~I~Y~~--~~L~V~l~~~~~~~~~~~~ls~~vdL~~~-l~-~~~~vGFSAsTG~~~~~h~I~sWsF~ 261 (262)
.+.+.+.+++|.|.. +.|+|.++. +.|+.. ..+ || ...|+||||+||+..+.|+|++....
T Consensus 148 rn~~~p~~iri~Y~~~~~~l~v~vd~-------~~Cf~~----~~v~lP~~~y~fGiSAaTg~~~d~hdIl~~~~~ 212 (215)
T cd06903 148 QDSGVPSTIRLSYDALNSLFKVQVDN-------RLCFQT----DKVQLPQGGYRFGITAANADNPESFEILKLKVW 212 (215)
T ss_pred cCCCCCEEEEEEEECCCCEEEEEECC-------CEEEec----CCeecCCCCCEEEEEEcCCCCCCcEEEEEEEEe
Confidence 455678999999955 889999863 124332 232 56 57789999999999999999998753
No 9
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=7e-22 Score=178.76 Aligned_cols=193 Identities=21% Similarity=0.251 Sum_probs=146.7
Q ss_pred eEEEeceEEeCCeEEeCCCCCCcEEEEEeCCceecccCCCCCeeeeEEEEEEEEecCCCCCCCcceEEEEeeCCCCCCCC
Q 024824 34 LLLYGNAKLDSGAISLTQDTTFSIGRALYHAKIPLKHTNSSTIRSFETSFTFSITPYNGQRPGHGLVFIFVPSADIQGAA 113 (262)
Q Consensus 34 ~~l~G~A~i~~~~i~LT~~~~~~~G~~~y~~pi~l~~~~~~~~~sFst~F~F~I~~~~~~~~gdGlAF~l~~~~~~~~~~ 113 (262)
|...|||..+...|||+|+..++.|.||.+..+++. .|+++..|+|++.+ +.+|||||+|.+... |-
T Consensus 56 W~~~GdAIas~eqvRlaPSmrsrkGavWtka~~~fe--------~weVev~~rVtGrG-RiGAdGlaiWYt~~~----G~ 122 (497)
T KOG3838|consen 56 WSHHGDAIASSEQVRLAPSMRSRKGAVWTKASVPFE--------NWEVEVQFRVTGRG-RIGADGLAIWYTRGR----GH 122 (497)
T ss_pred eeecCcccccccceeeccccccccCceeecccCCcc--------cceEEEEEEecccc-cccCCceEEEEecCC----Cc
Confidence 888999999999999999999999999999998874 69999999999984 689999999999765 34
Q ss_pred CCCccCCCCcCCCCCCCCcEEEEEEeeeccccccCCCCCeeEEEcCCccccceeecceeec-CCCCCc-ccceeeeeeec
Q 024824 114 ASQYLGFLNRTNDGNRNNNVFGIEFDIVQNQEFYDINNNHVGLNVNSIISVTAYKAGYWFQ-DNQNKT-NWWHFHALKLN 191 (262)
Q Consensus 114 ~G~~lGl~~~~~~~~~~~~~~AVEFDT~~N~~~~Dp~~~HIgi~~ns~~s~~~~~~~~~~~-~~g~~~-~~~~~~~~~l~ 191 (262)
-|+.+|-.+. ..++||.||.+.|. +..+.+.|.+..|... . .|++ .||.+. +..|..++ .+
T Consensus 123 ~GpVfGg~d~-------WnGigiffDSfdnD--~qknnP~Is~~lndGt----~---~ydh~~DGasQ~LssCqrDF-RN 185 (497)
T KOG3838|consen 123 VGPVFGGLDS-------WNGIGIFFDSFDND--GQKNNPAISVLLNDGT----I---PYDHPGDGASQGLSSCQRDF-RN 185 (497)
T ss_pred cccccccccc-------ccceEEEeeccccc--CCcCCccEEEEecCCc----c---cccCCCccHHHHHHHhhHHh-cc
Confidence 5677776553 67899999999986 3456777888776532 1 1333 455433 22232232 22
Q ss_pred CCceEEEEEEEeCCeeEEEEEeCCCCCCCCceEEEEecCCCC-CCCcEEEEEEeeccCcccceEEEEEE
Q 024824 192 NGKIYRVWIDYKDSFLGVSIAPAKMKKPLWPLLNVFIDLSDF-FLDEMYAGFCAATGQLIGNHKILSWS 259 (262)
Q Consensus 192 ~G~~~~v~I~Y~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~-l~~~~~vGFSAsTG~~~~~h~I~sWs 259 (262)
.--+.+|+|+|-..+|+|.|++.-. |. +-...+++..++ ||...|+|.||+||++.+-|||+++.
T Consensus 186 kPyPvRarItY~~nvLtv~innGmt--p~-d~yE~C~rve~~~lp~nGyFGvSAATGgLADDHDVl~Fl 251 (497)
T KOG3838|consen 186 KPYPVRARITYYGNVLTVMINNGMT--PS-DDYEFCVRVENLLLPPNGYFGVSAATGGLADDHDVLSFL 251 (497)
T ss_pred CCCCceEEEEEeccEEEEEEcCCCC--CC-CCcceeEeccceeccCCCeeeeeecccccccccceeeeE
Confidence 2357899999999999999986443 32 223444555554 78999999999999999999999974
No 10
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.1e-20 Score=168.39 Aligned_cols=196 Identities=18% Similarity=0.157 Sum_probs=149.0
Q ss_pred CCeEEEeceEEeCCeEEeCCCCCCcEEEEEeCCceecccCCCCCeeeeEEEEEEEEecCCCCCCCcceEEEEeeCCCCCC
Q 024824 32 SKLLLYGNAKLDSGAISLTQDTTFSIGRALYHAKIPLKHTNSSTIRSFETSFTFSITPYNGQRPGHGLVFIFVPSADIQG 111 (262)
Q Consensus 32 ~~~~l~G~A~i~~~~i~LT~~~~~~~G~~~y~~pi~l~~~~~~~~~sFst~F~F~I~~~~~~~~gdGlAF~l~~~~~~~~ 111 (262)
..|.+.|++.++.+.||||++.+++.|++|.+.||..+ +|+..+.|+++++.+...|||||+|++.+...
T Consensus 72 ~~W~~~Gstvv~~~~irLT~d~qsk~GAv~n~~Pv~s~--------~wev~v~fkv~~~s~~lfgdG~Aiw~t~Er~q-- 141 (351)
T KOG3839|consen 72 PNWNLSGSTVVTSNYIRLTPDEQSKSGAVWNRQPVFSR--------DWEVLVHFKVHGQSKNLFGDGMAIWYTKERAQ-- 141 (351)
T ss_pred cCccccccEEEEeeeeeccccccccccccccCCCcccc--------ceeEEEEEEEecCCCcccccceEEEeeccccc--
Confidence 47999999999999999999999999999999999854 69999999999988888999999999987743
Q ss_pred CCCCCccCCCCcCCCCCCCCcEEEEEEeeeccccccCCC--CCeeEEEcCCccccceeecceeecCCCCCc-ccceeeee
Q 024824 112 AAASQYLGFLNRTNDGNRNNNVFGIEFDIVQNQEFYDIN--NNHVGLNVNSIISVTAYKAGYWFQDNQNKT-NWWHFHAL 188 (262)
Q Consensus 112 ~~~G~~lGl~~~~~~~~~~~~~~AVEFDT~~N~~~~Dp~--~~HIgi~~ns~~s~~~~~~~~~~~~~g~~~-~~~~~~~~ 188 (262)
.|+.+|..++ .+++||..|||.|.+ +-+. .+-|.++++.. +..|..+.||..| ..++...+
T Consensus 142 --~GPvFG~~dk-------F~GL~vfidtY~n~~-g~~~~v~P~isvmv~~g------s~sYD~~~Dg~~tel~gc~a~~ 205 (351)
T KOG3839|consen 142 --PGPVFGSKDK-------FTGLAVFIDTYGNHN-GPHEHVFPYISVMVNIG------SLSYDHSKDGTHTELAGCTANF 205 (351)
T ss_pred --CCCCCCCccc-------ceeEEEEEeccCCcC-CCcccceeeEEEEeccC------CcccccCCCCCccccccceeee
Confidence 5788998764 788999999999853 1111 34455554421 1124555666544 32222222
Q ss_pred eecCC-ceEEEEEEEeCCeeEEEEEeCCCCCCCCceEEEEecCCCC-CCCcEEEEEEeeccCcccceEEEEEEE
Q 024824 189 KLNNG-KIYRVWIDYKDSFLGVSIAPAKMKKPLWPLLNVFIDLSDF-FLDEMYAGFCAATGQLIGNHKILSWSF 260 (262)
Q Consensus 189 ~l~~G-~~~~v~I~Y~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~-l~~~~~vGFSAsTG~~~~~h~I~sWsF 260 (262)
++. -...+.|.|+.++|++.++..+. ..+..+.++.++ +|.--|+|+||+||+++++|+|+|-.+
T Consensus 206 --rn~~~dt~~~iry~~~~l~~~~dl~~~-----~~~~~c~~~n~v~lp~g~~fg~SasTGdlSd~HdivS~kl 272 (351)
T KOG3839|consen 206 --RNLPHDTLVVIRYEKKTLSISIDLEGP-----NEWIDCFSLNNVELPLGYFFGVSASTGDLSDSHDIVSLKL 272 (351)
T ss_pred --ccCCCcceeEEEecCCceEEEEecCCC-----ceeeeeeeecceecccceEEeeeeccCccchhhHHHHhhh
Confidence 221 24579999988999999986542 235666777776 889999999999999999999987543
No 11
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.
Probab=99.27 E-value=1.4e-09 Score=94.29 Aligned_cols=203 Identities=15% Similarity=0.135 Sum_probs=116.2
Q ss_pred eCCeEEeCCCCCCcEEEEEeCCceecccCCCCCeeeeEEEEEEEEecCCCCCCCcceEEEEeeCC-CCCCCCCCCccCCC
Q 024824 43 DSGAISLTQDTTFSIGRALYHAKIPLKHTNSSTIRSFETSFTFSITPYNGQRPGHGLVFIFVPSA-DIQGAAASQYLGFL 121 (262)
Q Consensus 43 ~~~~i~LT~~~~~~~G~~~y~~pi~l~~~~~~~~~sFst~F~F~I~~~~~~~~gdGlAF~l~~~~-~~~~~~~G~~lGl~ 121 (262)
.++.+|||++..+|+|.+.|.++++-.+ .-.+++|.+..-+. ...+||||||||..-. ....+..||.|||.
T Consensus 30 ~~g~LRLT~~~~nqata~~~~~~FPs~~------n~v~veFd~yayg~-~g~GADGia~vLsDasv~p~~G~fGGsLGYa 102 (255)
T cd06900 30 VNNRLRLTDASGNQATAVTLQRLFPSAG------NYVEVEFDYYAYGS-GGNGADGVALVLSDASVTPQAGAFGGSLGYA 102 (255)
T ss_pred ccCeEEeccCccCcceeEEEeeeeccCC------CeEEEEEEEEEecC-CCCCCceEEEEEeCCCcCCcCCCcCcccccc
Confidence 4899999999999999999999998532 34889999888764 3468999999998654 22346788999998
Q ss_pred CcC-CCCCCCCcEEEEEEeeeccccc-cC-----CC--CCeeEEEcCCccccceeecceeecCCCCCcccceeeeee-ec
Q 024824 122 NRT-NDGNRNNNVFGIEFDIVQNQEF-YD-----IN--NNHVGLNVNSIISVTAYKAGYWFQDNQNKTNWWHFHALK-LN 191 (262)
Q Consensus 122 ~~~-~~~~~~~~~~AVEFDT~~N~~~-~D-----p~--~~HIgi~~ns~~s~~~~~~~~~~~~~g~~~~~~~~~~~~-l~ 191 (262)
-+. .........++|-||-|-|..- .+ |. .+.|+|- +.-+. .. .|.... |...+......-. -.
T Consensus 103 ~~~~~~~GfaGGwLGiGlDEyGNFsn~~eg~~~~~g~r~~sV~vR--Gsg~g-~~--gY~yl~-gt~~~~~~id~~~~~~ 176 (255)
T cd06900 103 QRNDGVPGFAGGWLGIGLDEYGNFSNPNEGRNGFSGRRPQSVTVR--GSGSG-YT--GYKYIT-GTGVLPPGIDNNSTST 176 (255)
T ss_pred cccCCCCccccceEEEEEeccccccCCCCCccCCcccccceEEEE--CCCCC-Cc--CceEec-ccCCCCcccccCCCCC
Confidence 764 2222345689999999987421 11 11 1233332 21110 00 111110 1000000000000 00
Q ss_pred CCceEEEEEEEe---CC--eeEEEEEeCCCCCCCCceEE--EEecCC--CCCCCcEEEEEEeeccCcccceEEEEEE
Q 024824 192 NGKIYRVWIDYK---DS--FLGVSIAPAKMKKPLWPLLN--VFIDLS--DFFLDEMYAGFCAATGQLIGNHKILSWS 259 (262)
Q Consensus 192 ~G~~~~v~I~Y~---~~--~L~V~l~~~~~~~~~~~~ls--~~vdL~--~~l~~~~~vGFSAsTG~~~~~h~I~sWs 259 (262)
..-.|+=+|+-+ .. .|+|.-+...... ..+++. ..++.. ..+|+..+++|++|||.....|+|-..+
T Consensus 177 ~~~~hrY~i~Ids~~~~~~~vsV~R~~~~gg~-~~~~I~~~d~~~~~~q~avP~~f~lS~TgSTGgstN~HEIdnf~ 252 (255)
T cd06900 177 PAPGHRYRITIDSTNGDNAWLSVERDIGNGGA-YFVVILTFDALAEQNQDAIPENFYLSFTGSTGGSTNTHEIDNFQ 252 (255)
T ss_pred CCCceEEEEEEecCCCCceEEEEEEEccCCce-eEEeecceeeccccCCCCCCccEEEEEEecCCCcccceeecceE
Confidence 012244444442 22 3444444221111 112221 112333 3478999999999999999999998765
No 12
>smart00282 LamG Laminin G domain.
Probab=87.18 E-value=12 Score=28.93 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.3
Q ss_pred eeecCCceEEEEEEEeCCeeEEEEEeC
Q 024824 188 LKLNNGKIYRVWIDYKDSFLGVSIAPA 214 (262)
Q Consensus 188 ~~l~~G~~~~v~I~Y~~~~L~V~l~~~ 214 (262)
..+++|++|++.|.+..+.++++|+..
T Consensus 57 ~~~~dg~WH~v~i~~~~~~~~l~VD~~ 83 (135)
T smart00282 57 TPLNDGQWHRVAVERNGRRVTLSVDGE 83 (135)
T ss_pred eEeCCCCEEEEEEEEeCCEEEEEECCC
Confidence 458899999999999989999999853
No 13
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=77.38 E-value=31 Score=26.72 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=22.7
Q ss_pred eecCCceEEEEEEEeCCeeEEEEEeC
Q 024824 189 KLNNGKIYRVWIDYKDSFLGVSIAPA 214 (262)
Q Consensus 189 ~l~~G~~~~v~I~Y~~~~L~V~l~~~ 214 (262)
.+++|++|++.|++..+.+.++|+..
T Consensus 76 ~v~dg~Wh~v~i~~~~~~~~l~VD~~ 101 (151)
T cd00110 76 PLNDGQWHSVSVERNGRSVTLSVDGE 101 (151)
T ss_pred ccCCCCEEEEEEEECCCEEEEEECCc
Confidence 47899999999999888999999854
No 14
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=66.89 E-value=42 Score=35.89 Aligned_cols=64 Identities=25% Similarity=0.301 Sum_probs=47.4
Q ss_pred CCeEEEeceEEe---CCeEEeCCCCCCcEEEEEeCCceecccCCC-----CCeeeeEEEEEEEEecCCCCCCCcce
Q 024824 32 SKLLLYGNAKLD---SGAISLTQDTTFSIGRALYHAKIPLKHTNS-----STIRSFETSFTFSITPYNGQRPGHGL 99 (262)
Q Consensus 32 ~~~~l~G~A~i~---~~~i~LT~~~~~~~G~~~y~~pi~l~~~~~-----~~~~sFst~F~F~I~~~~~~~~gdGl 99 (262)
+.+.++|...++ .+.++|..-....-+|++-..|+.+..+.+ .-.+.|+.+|-|+..- ...|||
T Consensus 804 ~~LvFNG~~Yld~~K~~~~~ls~l~a~fkl~~iv~~paTf~sk~Sy~~la~L~ay~s~~l~Fqfkt----~sp~gl 875 (1591)
T KOG3514|consen 804 SGLVFNGQDYLDKCKMGDIQLSELSARFKLRAIVADPATFKSKSSYVKLATLQAYFSMHLFFQFKT----TSPDGL 875 (1591)
T ss_pred hheEECcHHHHHHHhcCCcchhhcchhhCceEEeeccceeeechhhhhhhhhheeeEEEEEEEEee----cCCCeE
Confidence 579999999883 788888776666778889999998876544 2457788887777742 456775
No 15
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=58.32 E-value=41 Score=25.25 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=33.8
Q ss_pred ecCCceEEEEEEEeCCeeEEEEEeCCCCCCCCceEEEEecCCCCCCCcEEEEEEe
Q 024824 190 LNNGKIYRVWIDYKDSFLGVSIAPAKMKKPLWPLLNVFIDLSDFFLDEMYAGFCA 244 (262)
Q Consensus 190 l~~G~~~~v~I~Y~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~~~~vGFSA 244 (262)
|...+....||.+.+++++|..+. ...|+++.. |-. -..--|||||+
T Consensus 49 ls~~e~~~fwI~~~~G~I~vg~~g-----~~~pfl~~~-Dp~--~~~v~yvGft~ 95 (102)
T PF12248_consen 49 LSPSEFRMFWISWRDGTIRVGRGG-----EDEPFLEWT-DPE--PIPVNYVGFTG 95 (102)
T ss_pred CCCCccEEEEEEECCCEEEEEECC-----CccEEEEEE-CCC--CCcccEEEEec
Confidence 455678899999989999998873 234788776 222 34678999943
No 16
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=28.34 E-value=75 Score=23.52 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=22.1
Q ss_pred eecCCceEEEEEEEeCCeeEEEEEeC
Q 024824 189 KLNNGKIYRVWIDYKDSFLGVSIAPA 214 (262)
Q Consensus 189 ~l~~G~~~~v~I~Y~~~~L~V~l~~~ 214 (262)
.+.+|++|++.|.+..+.+++.++..
T Consensus 50 ~~~dg~wh~v~i~~~~~~~~l~Vd~~ 75 (128)
T PF02210_consen 50 NLNDGQWHKVSISRDGNRVTLTVDGQ 75 (128)
T ss_dssp SSTSSSEEEEEEEEETTEEEEEETTS
T ss_pred cccccceeEEEEEEeeeeEEEEecCc
Confidence 37789999999999888899888743
No 17
>PRK10894 lipopolysaccharide transport periplasmic protein LptA; Provisional
Probab=22.14 E-value=1.1e+02 Score=25.37 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=12.8
Q ss_pred CeEEEeceEEeCCeEEeCCC
Q 024824 33 KLLLYGNAKLDSGAISLTQD 52 (262)
Q Consensus 33 ~~~l~G~A~i~~~~i~LT~~ 52 (262)
...+.|+..+..+..+|+.+
T Consensus 47 ~~~~tGnV~i~QG~~~L~AD 66 (180)
T PRK10894 47 VVTFTGNVVVTQGTIKINAD 66 (180)
T ss_pred EEEEEeeEEEEECceEEEeE
Confidence 35667777776666666554
No 18
>PHA02104 hypothetical protein
Probab=21.32 E-value=69 Score=22.85 Aligned_cols=18 Identities=44% Similarity=0.695 Sum_probs=14.5
Q ss_pred ecCCceEEEEEEEeCCee
Q 024824 190 LNNGKIYRVWIDYKDSFL 207 (262)
Q Consensus 190 l~~G~~~~v~I~Y~~~~L 207 (262)
..+|+.+++.|+|+.+++
T Consensus 55 a~~gkiynatidynak~v 72 (89)
T PHA02104 55 AQNGKIYNATIDYNAKRV 72 (89)
T ss_pred hhCCeEEeeEEccCceEE
Confidence 457899999999977664
Done!