BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024825
         (262 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 47  FEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTH 105
            +DGY WRKYGQK + G  YPRSYY+CT   T  C   K V+R+  DP     TY G H
Sbjct: 17  LDDGYRWRKYGQKVVKGNPYPRSYYKCT---TPGCGVRKHVERAATDPKAVVTTYEGKH 72


>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score = 64.3 bits (155), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 49  DGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTH 105
           DGY WRKYGQK + G+ YPRSYYRC+   +  C   K V+RS  D      TY G H
Sbjct: 16  DGYRWRKYGQKSVKGSPYPRSYYRCS---SPGCPVKKHVERSSHDTKLLITTYEGKH 69


>pdb|3OH8|A Chain A, Crystal Structure Of The Nucleoside-Diphosphate Sugar
           Epimerase From Corynebacterium Glutamicum. Northeast
           Structural Genomics Consortium Target Cgr91
          Length = 516

 Score = 30.8 bits (68), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 11  QVIFMLTVTAKLGCRKTLPRRTDKVKVSFESGLEGPFEDGYSWRKYGQKDILGAKYPRSY 70
           +V F+ T  A  G    LP     +K  F +GL G F DG SW  +   D L   Y R+ 
Sbjct: 298 RVAFIRTGVALSGRGGXLP----LLKTLFSTGLGGKFGDGTSWFSWIAIDDLTDIYYRAI 353

Query: 71  YRCTYRNTQNCWATKQVQRSD 91
                    N  A   V  +D
Sbjct: 354 VDAQISGPINAVAPNPVSNAD 374


>pdb|3GW4|A Chain A, Crystal Structure Of Uncharacterized Protein From
           Deinococcus Radiodurans. Northeast Structural Genomics
           Consortium Target Drr162b.
 pdb|3GW4|B Chain B, Crystal Structure Of Uncharacterized Protein From
           Deinococcus Radiodurans. Northeast Structural Genomics
           Consortium Target Drr162b
          Length = 203

 Score = 27.3 bits (59), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 170 CFSSLMLDENNFLGGFSSSFIPPAAAESNFYYISQNQMNFGDVHNLQQS-ESELPELQSA 228
           CF    L+E   L         P AA +N Y ++   ++FGD+   +Q  E  L   Q A
Sbjct: 88  CF----LEERELLASLPED---PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA 140

Query: 229 NNSVA 233
           ++ VA
Sbjct: 141 DDQVA 145


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,156,021
Number of Sequences: 62578
Number of extensions: 343623
Number of successful extensions: 894
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 888
Number of HSP's gapped (non-prelim): 7
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)