Query 024825
Match_columns 262
No_of_seqs 164 out of 631
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 15:02:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 2.9E-33 9.9E-38 213.7 4.9 65 44-111 11-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 6.3E-33 2.2E-37 212.8 5.5 63 45-110 15-77 (78)
3 2rpr_A Flywch-type zinc finger 72.9 1.8 6.1E-05 32.1 2.2 52 45-109 22-73 (87)
4 1cz6_A Protein (androctonin); 38.9 7.8 0.00027 23.6 0.4 8 69-76 16-23 (26)
5 1xiw_B T-cell surface glycopro 33.0 14 0.00048 27.2 1.0 49 48-107 17-75 (79)
6 1x9t_B N-terminl peptide of fi 24.2 29 0.00098 21.4 1.1 12 248-259 10-21 (26)
7 1xiw_A T-cell surface glycopro 17.2 37 0.0013 26.9 0.7 29 47-75 32-79 (105)
8 2cqw_A Sushi domain containing 10.9 1.2E+02 0.0041 23.2 2.0 34 221-254 47-81 (84)
9 3shs_A HOC head outer capsid p 10.4 1.1E+02 0.0039 28.3 2.0 35 50-85 37-81 (304)
10 2vsd_A CHIR AB1; immune system 9.4 60 0.002 23.3 -0.2 36 69-109 69-104 (105)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.97 E-value=2.9e-33 Score=213.69 Aligned_cols=65 Identities=45% Similarity=0.818 Sum_probs=61.1
Q ss_pred CCCCCCCchhhccCCccccCCCCCCcccccccCcCCCCccccceeecCCCCCeEEEEeccccCCCCCC
Q 024825 44 EGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTCFNGS 111 (262)
Q Consensus 44 e~~~dDGy~WRKYGQK~Ikgs~~PRsYYRCt~~~~~gC~A~KqVQrs~~Dp~~~~vtY~G~Htc~~~~ 111 (262)
.++++|||+|||||||.|+|++|||+|||||+ +||+|+|+|||+++|+.+++|||+|+|||+.+.
T Consensus 11 ~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~---~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 11 FDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS---PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp SSCCCCSSCEEEEEEECCTTCSSCEEEEEECS---TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCcCCCCchhhhCcccccCCCCCceeEeEcCC---CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 36899999999999999999999999999997 499999999999999999999999999998653
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.97 E-value=6.3e-33 Score=212.75 Aligned_cols=63 Identities=46% Similarity=0.886 Sum_probs=60.4
Q ss_pred CCCCCCchhhccCCccccCCCCCCcccccccCcCCCCccccceeecCCCCCeEEEEeccccCCCCC
Q 024825 45 GPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTCFNG 110 (262)
Q Consensus 45 ~~~dDGy~WRKYGQK~Ikgs~~PRsYYRCt~~~~~gC~A~KqVQrs~~Dp~~~~vtY~G~Htc~~~ 110 (262)
++++|||+|||||||.|+|++|||+|||||+ +||+|+|+|||+++|+.+++|||+|+|||+.+
T Consensus 15 ~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~---~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 15 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp CCCCSSSCBCCCEEECCTTCSSCEEEEEEEC---SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred CcCCCCchhhhCcccccCCCcCeeEEeecCc---CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 6799999999999999999999999999998 59999999999999999999999999999865
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=72.94 E-value=1.8 Score=32.11 Aligned_cols=52 Identities=13% Similarity=0.226 Sum_probs=33.4
Q ss_pred CCCCCCchhhccCCccccCCCCCCcccccccCcCCCCccccceeecCCCCCeEEEEeccccCCCC
Q 024825 45 GPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTCFN 109 (262)
Q Consensus 45 ~~~dDGy~WRKYGQK~Ikgs~~PRsYYRCt~~~~~gC~A~KqVQrs~~Dp~~~~vtY~G~Htc~~ 109 (262)
-..-|||.-++--+ ...+.|.||+.....+|.|+=... .+ + +.-.+.|||+.
T Consensus 22 ~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~-~~-~-----~~~~~~HnH~p 73 (87)
T 2rpr_A 22 FLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQ-GH-R-----IMVMRSHCHQP 73 (87)
T ss_dssp EEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEE-TT-E-----EEECSCCSSCC
T ss_pred EEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEc-CC-C-----EECCCCcCCCC
Confidence 35678987775321 123689999987777999973333 22 1 33568899853
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=38.93 E-value=7.8 Score=23.55 Aligned_cols=8 Identities=63% Similarity=1.485 Sum_probs=6.9
Q ss_pred cccccccC
Q 024825 69 SYYRCTYR 76 (262)
Q Consensus 69 sYYRCt~~ 76 (262)
.||+||++
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999986
No 5
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=33.05 E-value=14 Score=27.22 Aligned_cols=49 Identities=29% Similarity=0.478 Sum_probs=27.9
Q ss_pred CCCchhhccCCcc--------cc--CCCCCCcccccccCcCCCCccccceeecCCCCCeEEEEeccccCC
Q 024825 48 EDGYSWRKYGQKD--------IL--GAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTC 107 (262)
Q Consensus 48 dDGy~WRKYGQK~--------Ik--gs~~PRsYYRCt~~~~~gC~A~KqVQrs~~Dp~~~~vtY~G~Htc 107 (262)
..++.|.|-|... ++ ..+-||++|+|.- ++.+.... +.+.|-|+=-+||
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~--------~~~~~~~~---s~LqV~yR~C~NC 75 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNG--------TDIYKDKE---STVQVHYRMCQSC 75 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC----------------C---EEEEEEEECSCC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecC--------CCCCCccc---EEEEEEhhhcCCc
Confidence 5678999988642 33 4456999999953 22222111 2567777776666
No 6
>1x9t_B N-terminl peptide of fiber protein; jellyroll domain, insertion domain, anti-parallel beta sheets, virus like particle/peptide complex; HET: C15; 3.50A {Human adenovirus 2}
Probab=24.16 E-value=29 Score=21.40 Aligned_cols=12 Identities=17% Similarity=0.648 Sum_probs=9.6
Q ss_pred ccCCCCCCCCCC
Q 024825 248 ELDSNFPFDNAG 259 (262)
Q Consensus 248 ~fDp~f~f~~~~ 259 (262)
+|||.||||.+.
T Consensus 10 dFnPVYPYd~~~ 21 (26)
T 1x9t_B 10 TFNPVYPYDTEC 21 (26)
T ss_pred cCcccccCCCCc
Confidence 499999998764
No 7
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=17.19 E-value=37 Score=26.91 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=20.9
Q ss_pred CCCCchhhccCCcc----------------ccCCCC---CCccccccc
Q 024825 47 FEDGYSWRKYGQKD----------------ILGAKY---PRSYYRCTY 75 (262)
Q Consensus 47 ~dDGy~WRKYGQK~----------------Ikgs~~---PRsYYRCt~ 75 (262)
+++...|.|-|+.. +++... ||+||+|..
T Consensus 32 ~~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~~ 79 (105)
T 1xiw_A 32 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYP 79 (105)
T ss_dssp TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEE
T ss_pred CCCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEcc
Confidence 34558999988652 456644 899999963
No 8
>2cqw_A Sushi domain containing 2; somatomedin_B-like domain, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=10.94 E-value=1.2e+02 Score=23.22 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=27.9
Q ss_pred CccccccccccccCCCcccccccccccc-cCCCCC
Q 024825 221 ELPELQSANNSVANSPILNLDFSIDAAE-LDSNFP 254 (262)
Q Consensus 221 dl~EivSA~tSvtnsPi~d~df~ld~~~-fDp~f~ 254 (262)
|..++=-++.+.+.+.+.+-||.+.++. |+|+=|
T Consensus 47 DY~~~C~~~~p~sGs~mgg~df~v~~~~~~~~~~~ 81 (84)
T 2cqw_A 47 DFLDYCLEILPSSGSMMGGKDFVVQHLKWTDPSGP 81 (84)
T ss_dssp THHHHCSSCSCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred hHHhHccCCCCcCCccccCceeEEeeecccCCCCC
Confidence 6667766777888889999999999999 998743
No 9
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=10.41 E-value=1.1e+02 Score=28.25 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=25.2
Q ss_pred CchhhccCCccccCCCC----------CCcccccccCcCCCCcccc
Q 024825 50 GYSWRKYGQKDILGAKY----------PRSYYRCTYRNTQNCWATK 85 (262)
Q Consensus 50 Gy~WRKYGQK~Ikgs~~----------PRsYYRCt~~~~~gC~A~K 85 (262)
.|+|.|=|+. |.|+.. .-+.|+|.-.+..||.++.
T Consensus 37 TYqWyKDG~~-IsGaT~tLti~s~t~sdSG~YqCvVTDa~Gcs~tS 81 (304)
T 3shs_A 37 TYTWTKDDQP-HENNTATLTVADATSENAGSYKVTVQDTDTMTSVE 81 (304)
T ss_dssp EEEEEETTEE-CSCCSSEEEESSCCGGGCEEEEEEEEETTTCCEEE
T ss_pred eEEEEECCcc-ccCCcceEEeeeccccCCeEEEEEEEECCCCeeee
Confidence 5999998855 555432 2358999988888998654
No 10
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}
Probab=9.43 E-value=60 Score=23.32 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=14.9
Q ss_pred cccccccCcCCCCccccceeecCCCCCeEEEEeccccCCCC
Q 024825 69 SYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTCFN 109 (262)
Q Consensus 69 sYYRCt~~~~~gC~A~KqVQrs~~Dp~~~~vtY~G~Htc~~ 109 (262)
+-|+|...+.. + .+.-...|+-.+.|+|.+.|.|..
T Consensus 69 G~Y~C~~~n~~--~---~~~s~~Sdpl~L~V~~~~~~~~~~ 104 (105)
T 2vsd_A 69 GTYQCRYQVSE--P---LWTSNQSDPVELVLTIEGRHHHHH 104 (105)
T ss_dssp EEEEEEEEEET--T---EEECCCCCCEEECCC---------
T ss_pred eEEEEEEEcCC--C---CcccCCCCCEEEEEEEeccccccC
Confidence 57888764211 1 112123468889999999987753
Done!