Query 024826
Match_columns 262
No_of_seqs 245 out of 2419
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:42:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1838 Alpha/beta hydrolase [ 100.0 1.8E-41 4E-46 298.7 20.8 224 11-235 20-247 (409)
2 PLN02511 hydrolase 100.0 3.9E-36 8.5E-41 271.9 25.5 207 29-236 17-223 (388)
3 COG0429 Predicted hydrolase of 100.0 2E-35 4.4E-40 252.3 20.3 183 53-238 16-200 (345)
4 PRK10985 putative hydrolase; P 100.0 1.3E-30 2.7E-35 230.8 23.7 180 54-236 2-181 (324)
5 PLN02298 hydrolase, alpha/beta 99.8 3.1E-18 6.7E-23 151.7 16.1 138 82-224 30-170 (330)
6 PLN02385 hydrolase; alpha/beta 99.8 9E-18 1.9E-22 150.1 16.8 137 81-223 58-197 (349)
7 PHA02857 monoglyceride lipase; 99.8 9.1E-18 2E-22 144.8 15.6 129 88-224 4-133 (276)
8 TIGR03101 hydr2_PEP hydrolase, 99.8 2.9E-17 6.2E-22 140.9 17.2 131 88-225 4-136 (266)
9 PRK10749 lysophospholipase L2; 99.8 1.5E-17 3.3E-22 147.5 15.3 130 85-223 31-166 (330)
10 COG2267 PldB Lysophospholipase 99.8 1.4E-17 3.1E-22 145.5 14.2 135 84-226 9-145 (298)
11 PRK00870 haloalkane dehalogena 99.7 3.3E-17 7.1E-22 143.4 14.9 134 77-222 12-149 (302)
12 PRK13604 luxD acyl transferase 99.7 1.5E-16 3.4E-21 137.8 18.0 137 85-229 10-147 (307)
13 KOG1455 Lysophospholipase [Lip 99.7 4.6E-17 1E-21 138.2 11.8 140 79-224 22-165 (313)
14 TIGR02240 PHA_depoly_arom poly 99.7 8.2E-17 1.8E-21 139.0 11.5 118 93-224 10-127 (276)
15 TIGR01607 PST-A Plasmodium sub 99.7 1.3E-16 2.8E-21 141.7 11.8 132 89-225 2-187 (332)
16 PLN02824 hydrolase, alpha/beta 99.7 4.6E-16 9.9E-21 135.5 14.0 102 113-223 29-137 (294)
17 PLN02652 hydrolase; alpha/beta 99.7 8.9E-16 1.9E-20 139.1 16.1 136 84-225 110-247 (395)
18 PRK03592 haloalkane dehalogena 99.7 6.1E-16 1.3E-20 134.8 13.8 102 112-222 26-127 (295)
19 TIGR03343 biphenyl_bphD 2-hydr 99.7 8.4E-16 1.8E-20 132.5 14.4 113 97-222 20-135 (282)
20 TIGR01250 pro_imino_pep_2 prol 99.7 3.8E-15 8.1E-20 127.2 15.1 105 112-223 24-131 (288)
21 PLN02965 Probable pheophorbida 99.6 8.2E-16 1.8E-20 131.3 10.7 100 116-222 6-106 (255)
22 PRK05077 frsA fermentation/res 99.6 8.2E-15 1.8E-19 133.7 17.4 133 83-224 167-301 (414)
23 PF12697 Abhydrolase_6: Alpha/ 99.6 1.8E-15 3.9E-20 124.1 11.4 103 116-227 1-105 (228)
24 COG1647 Esterase/lipase [Gener 99.6 1E-15 2.2E-20 124.4 8.9 107 113-226 15-121 (243)
25 TIGR03611 RutD pyrimidine util 99.6 3E-15 6.5E-20 126.0 10.0 103 112-223 12-115 (257)
26 PRK10673 acyl-CoA esterase; Pr 99.6 4E-15 8.7E-20 126.3 10.5 101 111-221 14-114 (255)
27 TIGR03056 bchO_mg_che_rel puta 99.6 7.1E-15 1.5E-19 125.9 12.0 104 112-224 27-131 (278)
28 KOG4409 Predicted hydrolase/ac 99.6 1.9E-14 4E-19 124.6 14.4 133 80-221 61-193 (365)
29 TIGR03695 menH_SHCHC 2-succiny 99.6 1.3E-14 2.8E-19 120.8 13.2 106 113-224 1-106 (251)
30 PRK11126 2-succinyl-6-hydroxy- 99.6 6E-15 1.3E-19 124.4 11.2 101 113-223 2-102 (242)
31 PLN03087 BODYGUARD 1 domain co 99.6 1.6E-14 3.5E-19 133.3 14.8 106 112-224 200-310 (481)
32 TIGR02427 protocat_pcaD 3-oxoa 99.6 2.2E-15 4.8E-20 125.8 7.8 103 112-223 12-114 (251)
33 PLN02872 triacylglycerol lipas 99.6 2.5E-15 5.5E-20 135.9 8.6 157 64-223 25-197 (395)
34 PLN02578 hydrolase 99.6 1.2E-14 2.7E-19 130.2 12.2 101 113-222 86-186 (354)
35 PLN02679 hydrolase, alpha/beta 99.6 1.6E-14 3.4E-19 129.8 12.8 102 112-222 87-190 (360)
36 PLN02211 methyl indole-3-aceta 99.6 2.6E-14 5.7E-19 123.6 13.5 104 112-222 17-121 (273)
37 TIGR03100 hydr1_PEP hydrolase, 99.6 1.2E-13 2.5E-18 119.6 17.0 124 92-224 9-135 (274)
38 TIGR00976 /NonD putative hydro 99.6 2.5E-14 5.5E-19 135.2 13.2 134 89-228 1-137 (550)
39 PRK03204 haloalkane dehalogena 99.6 3.3E-14 7.2E-19 123.7 12.9 122 84-223 14-136 (286)
40 PRK06489 hypothetical protein; 99.6 1.6E-14 3.4E-19 129.8 10.9 105 113-222 69-188 (360)
41 TIGR01249 pro_imino_pep_1 prol 99.6 6.5E-14 1.4E-18 122.9 14.3 124 85-223 5-130 (306)
42 KOG4178 Soluble epoxide hydrol 99.6 4.9E-14 1.1E-18 121.5 12.3 116 97-224 32-149 (322)
43 PLN03084 alpha/beta hydrolase 99.6 5.9E-14 1.3E-18 126.7 13.2 104 112-224 126-233 (383)
44 PLN02894 hydrolase, alpha/beta 99.5 1.4E-13 3E-18 125.3 15.3 105 112-222 104-210 (402)
45 PRK10349 carboxylesterase BioH 99.5 1.3E-13 2.7E-18 117.6 11.4 96 112-221 12-107 (256)
46 PRK10566 esterase; Provisional 99.5 3.8E-13 8.2E-18 114.2 13.9 104 112-220 26-138 (249)
47 TIGR01836 PHA_synth_III_C poly 99.5 1.9E-13 4E-18 122.3 11.1 123 97-226 48-174 (350)
48 TIGR01738 bioH putative pimelo 99.5 1.9E-13 4.1E-18 113.8 10.2 97 112-222 3-99 (245)
49 PRK14875 acetoin dehydrogenase 99.5 2.9E-13 6.3E-18 121.3 12.0 102 112-222 130-231 (371)
50 KOG4391 Predicted alpha/beta h 99.5 2.3E-13 5E-18 110.4 9.9 136 79-225 49-186 (300)
51 TIGR03230 lipo_lipase lipoprot 99.5 6E-13 1.3E-17 121.0 13.4 111 110-222 38-153 (442)
52 cd00707 Pancreat_lipase_like P 99.5 2.3E-13 5.1E-18 117.7 10.1 112 110-223 33-147 (275)
53 TIGR01392 homoserO_Ac_trn homo 99.5 1.3E-13 2.8E-18 123.4 8.7 107 112-224 30-163 (351)
54 COG2945 Predicted hydrolase of 99.5 1.6E-12 3.5E-17 103.7 13.4 109 111-224 26-138 (210)
55 KOG2564 Predicted acetyltransf 99.5 9.9E-13 2.2E-17 110.5 12.7 157 40-221 22-180 (343)
56 PRK07581 hypothetical protein; 99.5 3.4E-13 7.3E-18 120.0 10.6 108 112-223 40-159 (339)
57 PRK05855 short chain dehydroge 99.5 5.4E-13 1.2E-17 126.3 11.9 125 87-223 5-131 (582)
58 PRK08775 homoserine O-acetyltr 99.4 2.1E-13 4.5E-18 121.7 8.3 80 137-223 94-173 (343)
59 PRK00175 metX homoserine O-ace 99.4 6.9E-13 1.5E-17 119.9 9.7 106 112-223 47-182 (379)
60 PF12695 Abhydrolase_5: Alpha/ 99.4 2.4E-12 5.1E-17 99.8 11.2 93 115-222 1-94 (145)
61 TIGR01840 esterase_phb esteras 99.4 3.4E-12 7.4E-17 106.2 12.8 110 111-223 11-130 (212)
62 PRK11071 esterase YqiA; Provis 99.4 1.1E-11 2.5E-16 101.5 13.3 95 114-228 2-98 (190)
63 KOG1552 Predicted alpha/beta h 99.4 1.3E-11 2.7E-16 103.2 13.2 129 84-225 35-165 (258)
64 KOG1454 Predicted hydrolase/ac 99.4 9.1E-12 2E-16 110.2 12.1 134 85-225 26-168 (326)
65 PF02129 Peptidase_S15: X-Pro 99.3 1.3E-11 2.7E-16 106.7 11.2 130 93-227 1-140 (272)
66 PLN02980 2-oxoglutarate decarb 99.3 1.6E-11 3.4E-16 128.4 13.0 102 112-222 1370-1479(1655)
67 TIGR01838 PHA_synth_I poly(R)- 99.3 5.3E-11 1.1E-15 111.2 12.8 123 97-226 174-305 (532)
68 PLN00021 chlorophyllase 99.3 9.1E-11 2E-15 103.3 13.5 116 96-223 38-166 (313)
69 COG1506 DAP2 Dipeptidyl aminop 99.3 6.9E-11 1.5E-15 113.3 13.7 147 77-226 358-510 (620)
70 PF06500 DUF1100: Alpha/beta h 99.3 3.6E-11 7.9E-16 107.7 10.6 141 82-232 163-305 (411)
71 PRK10115 protease 2; Provision 99.3 6.8E-11 1.5E-15 114.3 13.3 144 83-228 415-564 (686)
72 PF06342 DUF1057: Alpha/beta h 99.2 2E-10 4.3E-15 97.4 13.5 124 90-222 12-136 (297)
73 TIGR02821 fghA_ester_D S-formy 99.2 5E-10 1.1E-14 96.9 16.0 129 94-225 24-175 (275)
74 PLN02442 S-formylglutathione h 99.2 4.5E-10 9.7E-15 97.7 14.2 128 94-225 29-180 (283)
75 PRK10162 acetyl esterase; Prov 99.2 6.1E-10 1.3E-14 98.4 15.1 130 83-226 56-198 (318)
76 PF00561 Abhydrolase_1: alpha/ 99.2 7.4E-11 1.6E-15 97.7 8.3 78 143-222 1-78 (230)
77 KOG4667 Predicted esterase [Li 99.2 3.9E-10 8.5E-15 91.7 11.9 114 112-229 32-145 (269)
78 TIGR03502 lipase_Pla1_cef extr 99.2 1.7E-10 3.7E-15 111.3 11.3 94 112-207 448-576 (792)
79 KOG2382 Predicted alpha/beta h 99.2 1.9E-10 4E-15 99.4 9.4 106 111-221 50-157 (315)
80 PF12146 Hydrolase_4: Putative 99.1 2.1E-10 4.5E-15 80.3 7.2 64 112-177 15-79 (79)
81 COG0412 Dienelactone hydrolase 99.1 3.3E-09 7.2E-14 89.8 13.7 128 87-223 5-146 (236)
82 PRK11460 putative hydrolase; P 99.1 2.9E-09 6.3E-14 89.9 12.5 109 111-223 14-138 (232)
83 COG0596 MhpC Predicted hydrola 99.1 9.4E-10 2E-14 91.0 9.3 102 113-224 21-124 (282)
84 PRK06765 homoserine O-acetyltr 99.0 7.6E-10 1.7E-14 100.3 9.3 105 112-222 55-195 (389)
85 KOG1553 Predicted alpha/beta h 99.0 2.8E-09 6E-14 92.3 11.4 133 81-224 211-345 (517)
86 PRK07868 acyl-CoA synthetase; 99.0 2.4E-09 5.3E-14 107.9 12.1 122 96-225 48-179 (994)
87 COG4757 Predicted alpha/beta h 99.0 1.9E-09 4.2E-14 88.6 9.1 114 88-208 9-126 (281)
88 PF00326 Peptidase_S9: Prolyl 99.0 7.4E-10 1.6E-14 92.0 6.1 93 133-227 5-103 (213)
89 PF07819 PGAP1: PGAP1-like pro 99.0 6.1E-09 1.3E-13 87.5 11.3 110 112-226 3-126 (225)
90 PF07859 Abhydrolase_3: alpha/ 99.0 1.5E-09 3.2E-14 89.9 7.3 101 116-225 1-112 (211)
91 PF01738 DLH: Dienelactone hyd 99.0 4.2E-09 9.2E-14 87.8 10.0 106 111-221 12-130 (218)
92 KOG2624 Triglyceride lipase-ch 99.0 3E-09 6.4E-14 95.9 9.5 139 82-224 46-200 (403)
93 COG0657 Aes Esterase/lipase [L 99.0 1.7E-08 3.7E-13 88.8 13.9 130 90-227 57-195 (312)
94 TIGR01839 PHA_synth_II poly(R) 98.9 8.4E-09 1.8E-13 96.0 11.7 121 96-226 200-331 (560)
95 COG2936 Predicted acyl esteras 98.9 5.3E-09 1.2E-13 97.0 10.1 140 82-227 17-163 (563)
96 PF10503 Esterase_phd: Esteras 98.9 2.2E-08 4.8E-13 83.6 11.7 107 112-221 15-130 (220)
97 PF10230 DUF2305: Uncharacteri 98.9 3.2E-08 6.8E-13 85.3 12.2 110 113-224 2-123 (266)
98 PF05448 AXE1: Acetyl xylan es 98.8 5.7E-08 1.2E-12 85.8 13.3 132 84-223 56-209 (320)
99 PF12715 Abhydrolase_7: Abhydr 98.8 2.3E-08 5E-13 88.6 10.5 128 91-223 95-260 (390)
100 PF02273 Acyl_transf_2: Acyl t 98.8 7E-08 1.5E-12 80.2 12.6 138 86-231 4-142 (294)
101 PF00151 Lipase: Lipase; Inte 98.8 2.9E-09 6.3E-14 94.3 4.7 115 109-223 67-187 (331)
102 COG3458 Acetyl esterase (deace 98.8 1.4E-08 3.1E-13 85.4 8.1 131 84-222 56-209 (321)
103 PF06028 DUF915: Alpha/beta hy 98.8 9.7E-09 2.1E-13 87.6 6.9 114 112-227 10-147 (255)
104 PF01674 Lipase_2: Lipase (cla 98.8 4E-09 8.8E-14 87.9 4.3 91 115-207 3-96 (219)
105 PF12740 Chlorophyllase2: Chlo 98.8 7.5E-08 1.6E-12 81.7 11.8 101 112-221 16-129 (259)
106 PLN02733 phosphatidylcholine-s 98.8 2.1E-08 4.6E-13 91.9 8.8 95 129-226 108-204 (440)
107 PF06821 Ser_hydrolase: Serine 98.8 1E-08 2.2E-13 82.5 5.9 90 116-223 1-91 (171)
108 PF08538 DUF1749: Protein of u 98.8 8.6E-08 1.9E-12 82.9 11.6 120 94-224 18-149 (303)
109 PF00975 Thioesterase: Thioest 98.7 8.1E-08 1.8E-12 80.3 10.0 101 115-222 2-103 (229)
110 COG3509 LpqC Poly(3-hydroxybut 98.7 2.2E-07 4.8E-12 79.3 12.0 125 93-223 43-179 (312)
111 PF02230 Abhydrolase_2: Phosph 98.7 2.6E-07 5.6E-12 77.1 11.0 110 111-224 12-141 (216)
112 KOG1515 Arylacetamide deacetyl 98.6 9.8E-07 2.1E-11 78.1 14.6 132 89-227 66-211 (336)
113 PF05677 DUF818: Chlamydia CHL 98.6 1.4E-06 3E-11 76.1 14.9 134 83-223 111-254 (365)
114 TIGR01849 PHB_depoly_PhaZ poly 98.6 5.8E-07 1.2E-11 81.4 12.8 108 113-227 102-212 (406)
115 COG2021 MET2 Homoserine acetyl 98.6 3.6E-07 7.8E-12 80.5 10.8 111 112-224 50-183 (368)
116 COG4814 Uncharacterized protei 98.6 2.9E-07 6.3E-12 76.9 8.9 109 114-224 46-177 (288)
117 PF03403 PAF-AH_p_II: Platelet 98.6 1.2E-07 2.7E-12 85.6 7.3 108 111-223 98-262 (379)
118 COG3571 Predicted hydrolase of 98.6 1.5E-06 3.2E-11 67.9 11.8 113 112-226 13-127 (213)
119 PRK05371 x-prolyl-dipeptidyl a 98.6 4.2E-07 9E-12 89.0 10.9 90 133-225 270-375 (767)
120 PF05990 DUF900: Alpha/beta hy 98.5 1.1E-06 2.4E-11 74.2 11.8 118 112-230 17-144 (233)
121 KOG4627 Kynurenine formamidase 98.5 3.5E-07 7.7E-12 74.2 7.6 107 112-228 66-177 (270)
122 KOG2100 Dipeptidyl aminopeptid 98.5 1.3E-06 2.9E-11 85.4 12.6 133 93-226 506-647 (755)
123 COG4099 Predicted peptidase [G 98.5 2.6E-06 5.6E-11 72.8 12.7 130 88-225 165-306 (387)
124 PF00756 Esterase: Putative es 98.5 4.3E-07 9.4E-12 77.1 7.5 128 95-224 6-151 (251)
125 KOG2984 Predicted hydrolase [G 98.5 2.4E-07 5.2E-12 75.0 5.2 109 113-224 42-150 (277)
126 PF07224 Chlorophyllase: Chlor 98.4 9.4E-07 2E-11 74.3 8.4 101 112-221 45-155 (307)
127 PF05728 UPF0227: Uncharacteri 98.4 6.4E-06 1.4E-10 67.2 12.2 97 115-231 1-99 (187)
128 KOG2931 Differentiation-relate 98.4 3E-05 6.4E-10 66.4 16.2 127 84-223 22-157 (326)
129 KOG2281 Dipeptidyl aminopeptid 98.4 3.8E-06 8.3E-11 78.3 11.6 131 87-221 614-760 (867)
130 cd00312 Esterase_lipase Estera 98.4 1.8E-06 4E-11 80.7 9.6 125 96-224 78-214 (493)
131 COG4188 Predicted dienelactone 98.3 3.3E-06 7.1E-11 74.6 9.6 114 94-209 49-182 (365)
132 PF06057 VirJ: Bacterial virul 98.3 1.5E-06 3.3E-11 70.2 6.9 103 114-223 3-107 (192)
133 COG3319 Thioesterase domains o 98.3 3.4E-06 7.3E-11 72.0 9.2 103 114-224 1-104 (257)
134 KOG2565 Predicted hydrolases o 98.3 8.6E-06 1.9E-10 71.7 11.3 116 94-216 133-257 (469)
135 COG3545 Predicted esterase of 98.3 2.6E-06 5.6E-11 67.6 7.4 92 114-223 3-94 (181)
136 PF09752 DUF2048: Uncharacteri 98.3 1.4E-05 3E-10 70.4 12.4 109 111-223 90-210 (348)
137 COG0400 Predicted esterase [Ge 98.3 5.4E-06 1.2E-10 68.6 9.3 106 111-223 16-134 (207)
138 PRK10439 enterobactin/ferric e 98.2 2.5E-05 5.4E-10 71.4 13.3 123 94-223 191-323 (411)
139 COG3208 GrsT Predicted thioest 98.2 3E-06 6.4E-11 70.8 6.5 100 111-220 5-109 (244)
140 PTZ00472 serine carboxypeptida 98.2 5.5E-05 1.2E-09 70.3 15.3 136 86-225 49-218 (462)
141 PF05057 DUF676: Putative seri 98.2 4.6E-06 1E-10 69.7 7.1 110 112-224 3-126 (217)
142 PF00135 COesterase: Carboxyle 98.2 6E-06 1.3E-10 77.6 8.6 123 96-221 108-243 (535)
143 PF12048 DUF3530: Protein of u 98.2 8.8E-05 1.9E-09 65.3 15.2 116 111-228 85-234 (310)
144 COG1770 PtrB Protease II [Amin 98.2 8.9E-06 1.9E-10 76.3 9.1 143 85-229 420-568 (682)
145 KOG3847 Phospholipase A2 (plat 98.1 7E-06 1.5E-10 70.7 7.1 107 111-222 116-274 (399)
146 COG2272 PnbA Carboxylesterase 98.1 7.9E-06 1.7E-10 74.6 7.4 124 97-224 80-218 (491)
147 PF03096 Ndr: Ndr family; Int 98.1 3.3E-05 7.1E-10 66.4 10.8 133 87-231 2-142 (283)
148 COG4782 Uncharacterized protei 98.1 4.8E-05 1E-09 67.0 11.8 122 111-233 114-244 (377)
149 KOG3975 Uncharacterized conser 98.1 0.00014 3E-09 60.9 13.6 111 111-223 27-147 (301)
150 KOG2237 Predicted serine prote 98.1 5E-06 1.1E-10 77.6 5.4 143 83-227 440-588 (712)
151 PF05577 Peptidase_S28: Serine 98.1 4E-05 8.7E-10 70.7 11.4 111 112-225 28-150 (434)
152 PF10340 DUF2424: Protein of u 98.1 0.0001 2.2E-09 65.9 13.3 113 110-226 119-238 (374)
153 PRK10252 entF enterobactin syn 98.1 1.9E-05 4.1E-10 82.0 10.1 99 113-221 1068-1169(1296)
154 COG3243 PhaC Poly(3-hydroxyalk 98.1 1.3E-05 2.8E-10 71.9 7.3 112 112-227 106-221 (445)
155 COG1075 LipA Predicted acetylt 98.0 2.2E-05 4.7E-10 70.0 8.2 110 113-230 59-171 (336)
156 PF03583 LIP: Secretory lipase 98.0 0.00012 2.7E-09 63.8 12.6 98 130-232 14-122 (290)
157 KOG3043 Predicted hydrolase re 97.9 3.4E-05 7.3E-10 63.6 7.4 108 112-223 38-154 (242)
158 KOG3967 Uncharacterized conser 97.8 0.0003 6.5E-09 57.7 10.8 140 84-225 72-229 (297)
159 PF02450 LCAT: Lecithin:choles 97.8 3.5E-05 7.5E-10 70.1 5.1 87 130-225 66-162 (389)
160 PRK04940 hypothetical protein; 97.7 0.00038 8.1E-09 56.1 10.3 38 186-228 60-97 (180)
161 KOG4840 Predicted hydrolases o 97.7 0.00017 3.7E-09 59.5 8.3 111 112-225 35-146 (299)
162 KOG3724 Negative regulator of 97.7 0.00023 5E-09 68.1 10.0 108 110-224 86-221 (973)
163 smart00824 PKS_TE Thioesterase 97.7 0.00087 1.9E-08 54.3 11.6 84 132-221 16-100 (212)
164 cd00741 Lipase Lipase. Lipase 97.5 0.0003 6.6E-09 55.2 6.8 57 169-225 11-69 (153)
165 PF11144 DUF2920: Protein of u 97.5 0.0018 4E-08 58.2 12.0 108 112-221 34-217 (403)
166 PLN02606 palmitoyl-protein thi 97.5 0.001 2.2E-08 57.8 9.9 104 114-224 27-133 (306)
167 PF06259 Abhydrolase_8: Alpha/ 97.4 0.0077 1.7E-07 48.6 13.1 108 112-222 18-143 (177)
168 COG1505 Serine proteases of th 97.4 0.00023 5E-09 66.4 4.6 142 82-227 392-539 (648)
169 PLN02633 palmitoyl protein thi 97.3 0.0029 6.3E-08 55.1 11.0 104 114-224 26-132 (314)
170 PF03959 FSH1: Serine hydrolas 97.3 0.00079 1.7E-08 56.0 7.2 109 112-223 3-145 (212)
171 PF01764 Lipase_3: Lipase (cla 97.3 0.00083 1.8E-08 51.6 6.4 55 168-223 46-105 (140)
172 KOG3101 Esterase D [General fu 97.3 0.00049 1.1E-08 56.4 5.0 133 102-234 33-190 (283)
173 PF00450 Peptidase_S10: Serine 97.2 0.0049 1.1E-07 56.1 12.0 139 86-229 13-187 (415)
174 PF11339 DUF3141: Protein of u 97.2 0.0055 1.2E-07 56.7 11.7 105 112-227 68-179 (581)
175 PLN02517 phosphatidylcholine-s 97.2 0.00054 1.2E-08 64.3 5.2 92 132-225 159-265 (642)
176 cd00519 Lipase_3 Lipase (class 97.1 0.0014 3.1E-08 55.0 6.1 54 169-223 111-167 (229)
177 KOG2541 Palmitoyl protein thio 97.0 0.008 1.7E-07 51.1 10.3 103 114-224 24-129 (296)
178 KOG2369 Lecithin:cholesterol a 96.9 0.00063 1.4E-08 61.9 3.1 92 129-225 124-227 (473)
179 PF01083 Cutinase: Cutinase; 96.9 0.0016 3.5E-08 52.7 5.2 80 143-224 40-123 (179)
180 KOG1516 Carboxylesterase and r 96.9 0.0035 7.6E-08 59.5 7.8 123 96-221 96-230 (545)
181 PF11187 DUF2974: Protein of u 96.8 0.0035 7.6E-08 52.6 6.2 52 170-222 69-122 (224)
182 COG3150 Predicted esterase [Ge 96.7 0.018 3.8E-07 45.7 9.3 51 170-225 43-93 (191)
183 KOG2183 Prolylcarboxypeptidase 96.7 0.011 2.4E-07 53.2 9.0 107 114-223 81-202 (492)
184 COG2382 Fes Enterochelin ester 96.7 0.0048 1E-07 53.3 6.4 110 109-224 94-213 (299)
185 COG0627 Predicted esterase [Ge 96.6 0.0087 1.9E-07 52.8 7.9 114 111-226 52-190 (316)
186 PF08840 BAAT_C: BAAT / Acyl-C 96.6 0.0058 1.3E-07 50.9 6.3 51 171-224 5-57 (213)
187 PF07082 DUF1350: Protein of u 96.6 0.022 4.7E-07 48.2 9.5 98 112-220 16-122 (250)
188 PLN02454 triacylglycerol lipas 96.6 0.0059 1.3E-07 55.4 6.6 56 167-223 207-270 (414)
189 KOG2182 Hydrolytic enzymes of 96.5 0.016 3.4E-07 53.4 8.8 110 112-224 85-208 (514)
190 PLN00413 triacylglycerol lipas 96.4 0.009 2E-07 55.0 6.9 54 171-224 269-328 (479)
191 PLN02162 triacylglycerol lipas 96.4 0.0091 2E-07 54.8 6.9 54 171-224 263-322 (475)
192 COG3946 VirJ Type IV secretory 96.4 0.014 3.1E-07 52.3 7.8 89 113-208 260-348 (456)
193 COG2819 Predicted hydrolase of 96.4 0.2 4.4E-06 42.8 14.1 36 186-223 137-172 (264)
194 PF04083 Abhydro_lipase: Parti 96.3 0.01 2.2E-07 39.4 4.8 47 82-128 10-58 (63)
195 PF02089 Palm_thioest: Palmito 96.3 0.0035 7.6E-08 54.0 3.2 108 112-224 4-117 (279)
196 KOG4540 Putative lipase essent 96.3 0.01 2.3E-07 50.9 5.8 58 166-228 256-313 (425)
197 COG5153 CVT17 Putative lipase 96.3 0.01 2.3E-07 50.9 5.8 58 166-228 256-313 (425)
198 PF05576 Peptidase_S37: PS-10 96.2 0.0039 8.4E-08 56.2 3.1 108 112-226 62-172 (448)
199 PLN03016 sinapoylglucose-malat 96.2 0.074 1.6E-06 49.1 11.4 119 86-206 39-185 (433)
200 KOG2112 Lysophospholipase [Lip 96.1 0.024 5.2E-07 46.5 7.0 107 112-222 2-127 (206)
201 PLN02209 serine carboxypeptida 96.0 0.14 3.1E-06 47.3 12.6 135 87-225 42-214 (437)
202 PF11288 DUF3089: Protein of u 96.0 0.015 3.3E-07 48.0 5.5 85 140-224 43-137 (207)
203 PLN02934 triacylglycerol lipas 96.0 0.02 4.3E-07 53.1 6.6 54 171-224 306-365 (515)
204 KOG1282 Serine carboxypeptidas 95.8 0.13 2.8E-06 47.6 11.3 117 85-206 45-188 (454)
205 KOG2551 Phospholipase/carboxyh 95.7 0.12 2.7E-06 42.9 9.4 51 169-221 89-145 (230)
206 PLN02408 phospholipase A1 95.7 0.024 5.2E-07 50.8 5.8 55 169-223 181-240 (365)
207 KOG3253 Predicted alpha/beta h 95.6 0.016 3.5E-07 54.5 4.7 113 112-228 175-291 (784)
208 PLN02571 triacylglycerol lipas 95.4 0.031 6.6E-07 50.9 5.6 38 169-206 207-246 (413)
209 KOG4388 Hormone-sensitive lipa 95.2 0.063 1.4E-06 50.5 6.9 102 111-223 394-508 (880)
210 PF05277 DUF726: Protein of un 95.2 0.052 1.1E-06 48.4 6.3 68 183-250 217-296 (345)
211 PLN02324 triacylglycerol lipas 94.9 0.058 1.2E-06 49.1 5.7 39 168-206 195-235 (415)
212 PLN02310 triacylglycerol lipas 94.8 0.071 1.5E-06 48.5 6.2 54 170-224 189-249 (405)
213 KOG4372 Predicted alpha/beta h 94.8 0.053 1.2E-06 48.8 5.1 85 112-202 79-166 (405)
214 KOG4569 Predicted lipase [Lipi 94.7 0.055 1.2E-06 48.3 5.2 60 164-223 149-212 (336)
215 PLN02719 triacylglycerol lipas 94.7 0.067 1.4E-06 49.8 5.7 39 168-206 275-318 (518)
216 PF05705 DUF829: Eukaryotic pr 94.2 0.44 9.5E-06 40.1 9.3 102 116-224 2-113 (240)
217 PLN02802 triacylglycerol lipas 94.2 0.079 1.7E-06 49.3 5.0 53 170-223 312-370 (509)
218 PLN02847 triacylglycerol lipas 94.1 0.13 2.7E-06 48.8 6.2 35 172-206 237-271 (633)
219 PLN02761 lipase class 3 family 94.1 0.11 2.4E-06 48.4 5.8 39 168-206 270-314 (527)
220 PLN03037 lipase class 3 family 94.0 0.07 1.5E-06 49.8 4.4 52 171-223 299-358 (525)
221 PLN02753 triacylglycerol lipas 93.9 0.095 2.1E-06 49.0 5.0 38 169-206 290-332 (531)
222 COG2939 Carboxypeptidase C (ca 93.7 0.29 6.2E-06 45.4 7.7 98 109-209 97-221 (498)
223 PLN02213 sinapoylglucose-malat 92.9 0.39 8.4E-06 42.5 7.2 63 144-206 3-71 (319)
224 COG3673 Uncharacterized conser 92.6 1.1 2.3E-05 39.5 9.0 97 111-207 29-143 (423)
225 PF08237 PE-PPE: PE-PPE domain 92.4 1.3 2.8E-05 37.2 9.2 83 142-224 2-90 (225)
226 KOG1551 Uncharacterized conser 92.1 0.18 3.8E-06 43.1 3.6 108 95-210 100-219 (371)
227 PF09994 DUF2235: Uncharacteri 92.0 1.4 3E-05 38.2 9.3 94 114-207 2-113 (277)
228 COG4947 Uncharacterized protei 91.8 0.43 9.3E-06 38.2 5.2 52 173-227 88-140 (227)
229 COG0529 CysC Adenylylsulfate k 90.2 2.4 5.2E-05 34.3 8.1 39 112-150 21-59 (197)
230 KOG2385 Uncharacterized conser 89.8 0.61 1.3E-05 43.4 5.1 69 183-251 444-524 (633)
231 KOG1532 GTPase XAB1, interacts 87.7 4.4 9.5E-05 35.2 8.5 97 111-207 16-146 (366)
232 TIGR03712 acc_sec_asp2 accesso 85.9 11 0.00023 35.3 10.6 99 112-223 288-389 (511)
233 PF10081 Abhydrolase_9: Alpha/ 85.5 6.1 0.00013 34.3 8.3 107 113-225 33-149 (289)
234 KOG1202 Animal-type fatty acid 84.0 4.5 9.7E-05 41.9 7.7 96 111-221 2121-2217(2376)
235 PF07519 Tannase: Tannase and 83.3 4 8.6E-05 38.3 6.9 89 137-228 54-155 (474)
236 PF06309 Torsin: Torsin; Inte 81.1 2.9 6.2E-05 31.8 4.2 32 111-143 50-82 (127)
237 PF06441 EHN: Epoxide hydrolas 80.4 2.8 6.2E-05 31.1 3.9 33 92-128 75-107 (112)
238 COG4822 CbiK Cobalamin biosynt 80.2 9.2 0.0002 31.8 7.0 56 110-182 135-191 (265)
239 KOG1283 Serine carboxypeptidas 79.9 19 0.00042 32.0 9.2 97 110-208 28-144 (414)
240 PF09949 DUF2183: Uncharacteri 79.1 19 0.00041 26.1 7.8 81 132-217 14-96 (100)
241 PF01583 APS_kinase: Adenylyls 76.7 4.5 9.8E-05 31.9 4.3 38 113-150 1-38 (156)
242 COG4553 DepA Poly-beta-hydroxy 74.0 43 0.00093 29.5 9.7 108 112-228 102-214 (415)
243 TIGR03707 PPK2_P_aer polyphosp 71.4 5.7 0.00012 33.5 3.9 40 112-151 29-68 (230)
244 TIGR03709 PPK2_rel_1 polyphosp 70.5 6.3 0.00014 33.9 4.0 40 112-151 54-93 (264)
245 COG1073 Hydrolases of the alph 70.3 9.5 0.00021 32.1 5.2 37 112-150 48-84 (299)
246 PRK05282 (alpha)-aspartyl dipe 69.2 14 0.00029 31.3 5.7 92 113-205 31-131 (233)
247 cd01841 NnaC_like NnaC (CMP-Ne 69.0 28 0.0006 27.1 7.3 76 114-193 23-98 (174)
248 KOG4389 Acetylcholinesterase/B 68.0 5.2 0.00011 37.4 3.1 106 112-221 134-253 (601)
249 cd04502 SGNH_hydrolase_like_7 65.7 24 0.00053 27.5 6.3 75 115-193 23-97 (171)
250 cd05312 NAD_bind_1_malic_enz N 65.5 5.7 0.00012 34.5 2.7 105 116-227 27-147 (279)
251 PF08484 Methyltransf_14: C-me 65.3 18 0.00039 28.6 5.4 45 169-217 54-98 (160)
252 PF09419 PGP_phosphatase: Mito 61.9 23 0.00051 28.3 5.4 53 138-196 36-88 (168)
253 PF04301 DUF452: Protein of un 61.9 15 0.00032 30.6 4.5 78 112-221 10-88 (213)
254 KOG2029 Uncharacterized conser 61.6 7.6 0.00016 37.1 3.0 55 170-224 508-573 (697)
255 cd03146 GAT1_Peptidase_E Type 59.1 1E+02 0.0022 25.4 9.1 88 112-203 30-130 (212)
256 PF03976 PPK2: Polyphosphate k 57.7 4.3 9.3E-05 34.1 0.6 40 112-151 29-68 (228)
257 PRK07933 thymidylate kinase; V 56.8 26 0.00055 29.0 5.1 41 116-156 2-42 (213)
258 PF03205 MobB: Molybdopterin g 56.1 20 0.00043 27.6 4.1 44 116-159 2-45 (140)
259 PRK03846 adenylylsulfate kinas 55.5 75 0.0016 25.6 7.7 39 112-150 22-60 (198)
260 PRK00889 adenylylsulfate kinas 55.3 26 0.00057 27.6 4.8 38 113-150 3-40 (175)
261 COG1087 GalE UDP-glucose 4-epi 54.9 19 0.00041 31.7 4.1 37 117-157 3-39 (329)
262 PRK05368 homoserine O-succinyl 54.6 46 0.00099 29.3 6.5 60 139-207 96-155 (302)
263 KOG2521 Uncharacterized conser 54.3 57 0.0012 29.3 7.1 86 115-204 40-127 (350)
264 PF00101 RuBisCO_small: Ribulo 54.1 81 0.0018 22.8 7.7 64 131-194 16-83 (99)
265 TIGR02069 cyanophycinase cyano 54.1 56 0.0012 27.8 6.9 91 112-204 27-133 (250)
266 COG0552 FtsY Signal recognitio 53.2 1.3E+02 0.0028 26.9 9.0 79 132-218 211-291 (340)
267 TIGR00455 apsK adenylylsulfate 52.2 1.2E+02 0.0025 24.0 9.2 39 112-150 16-54 (184)
268 COG1073 Hydrolases of the alph 51.5 0.82 1.8E-05 38.7 -4.9 93 113-206 88-180 (299)
269 PLN02924 thymidylate kinase 51.5 35 0.00076 28.4 5.1 44 110-153 12-55 (220)
270 PRK13529 malate dehydrogenase; 50.1 14 0.00031 35.2 2.8 106 116-228 297-425 (563)
271 TIGR03708 poly_P_AMP_trns poly 50.0 26 0.00057 33.0 4.5 41 112-152 38-78 (493)
272 cd01828 sialate_O-acetylestera 49.0 88 0.0019 24.1 6.9 73 116-193 23-95 (169)
273 PF01580 FtsK_SpoIIIE: FtsK/Sp 47.1 79 0.0017 25.5 6.6 40 117-156 41-84 (205)
274 PF03283 PAE: Pectinacetyleste 46.2 34 0.00074 30.9 4.5 36 169-204 137-174 (361)
275 cd04951 GT1_WbdM_like This fam 46.0 1.9E+02 0.0042 24.8 10.0 38 115-152 2-39 (360)
276 cd01836 FeeA_FeeB_like SGNH_hy 44.4 87 0.0019 24.7 6.3 73 116-193 42-114 (191)
277 KOG2170 ATPase of the AAA+ sup 44.0 39 0.00085 29.8 4.3 31 111-142 107-138 (344)
278 PRK13973 thymidylate kinase; P 43.4 53 0.0012 26.9 5.0 40 114-153 3-42 (213)
279 cd01983 Fer4_NifH The Fer4_Nif 43.3 43 0.00093 22.6 3.9 32 118-149 3-34 (99)
280 TIGR01425 SRP54_euk signal rec 43.1 44 0.00095 31.0 4.8 39 112-150 98-136 (429)
281 cd01838 Isoamyl_acetate_hydrol 42.8 1.2E+02 0.0026 23.7 7.0 77 115-194 33-116 (199)
282 KOG0780 Signal recognition par 42.7 36 0.00078 31.1 4.0 38 112-149 99-136 (483)
283 PF05673 DUF815: Protein of un 42.7 82 0.0018 26.9 6.0 38 116-153 54-91 (249)
284 PTZ00317 NADP-dependent malic 42.5 20 0.00042 34.3 2.5 106 116-228 299-424 (559)
285 PF01656 CbiA: CobQ/CobB/MinD/ 42.3 35 0.00076 27.0 3.7 35 118-152 3-37 (195)
286 COG4425 Predicted membrane pro 42.2 39 0.00084 31.5 4.2 39 187-225 398-437 (588)
287 TIGR03708 poly_P_AMP_trns poly 40.8 36 0.00078 32.1 3.9 41 111-151 296-336 (493)
288 PF14606 Lipase_GDSL_3: GDSL-l 40.5 80 0.0017 25.5 5.4 28 166-193 74-101 (178)
289 cd01833 XynB_like SGNH_hydrola 40.1 93 0.002 23.6 5.7 71 119-193 17-87 (157)
290 PRK06171 sorbitol-6-phosphate 40.0 1.2E+02 0.0027 25.2 6.9 64 116-184 11-76 (266)
291 PRK13230 nitrogenase reductase 39.6 61 0.0013 27.7 5.0 41 115-156 3-43 (279)
292 cd02036 MinD Bacterial cell di 39.5 53 0.0011 25.5 4.3 36 117-152 3-38 (179)
293 COG0541 Ffh Signal recognition 38.8 55 0.0012 30.3 4.6 107 112-218 98-246 (451)
294 cd00762 NAD_bind_malic_enz NAD 38.4 36 0.00077 29.2 3.2 79 144-228 61-149 (254)
295 cd03129 GAT1_Peptidase_E_like 38.0 1.3E+02 0.0027 24.6 6.4 89 113-203 29-130 (210)
296 PRK13768 GTPase; Provisional 37.9 49 0.0011 28.1 4.1 36 115-150 3-38 (253)
297 COG3340 PepE Peptidase E [Amin 37.8 26 0.00057 29.2 2.2 88 113-201 32-132 (224)
298 cd01825 SGNH_hydrolase_peri1 S 37.7 1.9E+02 0.0042 22.4 7.4 77 114-193 24-104 (189)
299 TIGR00176 mobB molybdopterin-g 37.5 55 0.0012 25.5 4.0 39 116-154 1-39 (155)
300 cd01822 Lysophospholipase_L1_l 37.4 1.9E+02 0.0041 22.2 7.8 13 137-149 96-108 (177)
301 COG4088 Predicted nucleotide k 36.6 43 0.00094 28.0 3.3 36 115-150 2-37 (261)
302 cd03131 GATase1_HTS Type 1 glu 36.5 35 0.00076 27.4 2.8 61 139-208 59-119 (175)
303 PRK05670 anthranilate synthase 36.0 93 0.002 24.9 5.3 74 128-206 9-91 (189)
304 CHL00175 minD septum-site dete 35.9 84 0.0018 26.8 5.3 38 114-151 16-53 (281)
305 COG0552 FtsY Signal recognitio 35.7 68 0.0015 28.7 4.6 37 112-148 137-173 (340)
306 PRK10824 glutaredoxin-4; Provi 35.1 1.9E+02 0.0041 21.5 8.0 82 112-209 14-95 (115)
307 PRK12724 flagellar biosynthesi 35.1 2.3E+02 0.005 26.3 8.1 74 135-217 292-365 (432)
308 cd02037 MRP-like MRP (Multiple 35.0 75 0.0016 24.8 4.5 38 117-154 3-40 (169)
309 TIGR03371 cellulose_yhjQ cellu 34.8 67 0.0015 26.6 4.4 40 115-154 3-42 (246)
310 PRK09739 hypothetical protein; 34.7 2.1E+02 0.0045 23.1 7.2 69 114-182 6-80 (199)
311 PRK06731 flhF flagellar biosyn 34.5 3E+02 0.0066 23.7 9.2 75 132-218 143-218 (270)
312 COG4451 RbcS Ribulose bisphosp 34.4 2E+02 0.0043 21.6 7.3 64 131-194 24-91 (127)
313 PRK06523 short chain dehydroge 34.2 2.4E+02 0.0051 23.3 7.7 64 116-184 11-76 (260)
314 COG1763 MobB Molybdopterin-gua 33.9 83 0.0018 24.9 4.4 40 115-154 3-42 (161)
315 COG0541 Ffh Signal recognition 33.8 3.2E+02 0.0068 25.5 8.6 23 132-154 172-194 (451)
316 PRK10867 signal recognition pa 33.5 69 0.0015 29.7 4.5 39 112-150 98-137 (433)
317 PRK12467 peptide synthase; Pro 33.2 2E+02 0.0044 34.7 9.1 86 113-206 3692-3777(3956)
318 cd01832 SGNH_hydrolase_like_1 33.1 2.2E+02 0.0048 22.1 7.0 73 116-193 41-113 (185)
319 PF04084 ORC2: Origin recognit 33.1 2.4E+02 0.0052 25.1 7.7 100 117-221 57-177 (326)
320 COG0331 FabD (acyl-carrier-pro 32.9 56 0.0012 28.8 3.7 30 176-205 74-104 (310)
321 PRK00771 signal recognition pa 32.9 80 0.0017 29.4 4.8 40 112-151 93-132 (437)
322 cd01834 SGNH_hydrolase_like_2 32.8 97 0.0021 24.1 4.9 27 166-192 85-111 (191)
323 cd02032 Bchl_like This family 32.5 63 0.0014 27.4 3.9 35 121-155 7-41 (267)
324 PF12242 Eno-Rase_NADH_b: NAD( 32.4 83 0.0018 21.7 3.6 45 166-210 17-64 (78)
325 cd07198 Patatin Patatin-like p 32.3 80 0.0017 24.8 4.3 34 175-209 16-49 (172)
326 cd02033 BchX Chlorophyllide re 32.1 99 0.0021 27.6 5.1 39 113-151 30-68 (329)
327 KOG4022 Dihydropteridine reduc 32.1 2.7E+02 0.0059 22.4 7.2 63 117-183 6-68 (236)
328 PRK10751 molybdopterin-guanine 32.0 96 0.0021 24.8 4.6 42 113-154 5-46 (173)
329 cd02027 APSK Adenosine 5'-phos 32.0 1.4E+02 0.003 22.9 5.5 35 116-150 1-35 (149)
330 TIGR00128 fabD malonyl CoA-acy 31.9 61 0.0013 27.7 3.8 22 185-206 82-103 (290)
331 cd02040 NifH NifH gene encodes 31.9 97 0.0021 26.1 5.0 40 116-156 4-43 (270)
332 COG2840 Uncharacterized protei 31.9 44 0.00096 27.1 2.6 43 116-159 98-140 (184)
333 PF03575 Peptidase_S51: Peptid 31.9 26 0.00057 27.2 1.3 23 130-152 1-23 (154)
334 PRK06490 glutamine amidotransf 31.9 3.1E+02 0.0067 23.0 10.1 84 112-205 7-104 (239)
335 TIGR02690 resist_ArsH arsenica 31.7 3.1E+02 0.0066 22.9 10.2 87 112-199 25-141 (219)
336 PRK06696 uridine kinase; Valid 31.6 1.1E+02 0.0024 25.2 5.1 38 112-149 20-57 (223)
337 TIGR02964 xanthine_xdhC xanthi 31.4 1.7E+02 0.0038 24.8 6.3 57 91-153 68-134 (246)
338 PRK05541 adenylylsulfate kinas 31.4 77 0.0017 24.8 4.0 38 112-149 5-42 (176)
339 PRK09444 pntB pyridine nucleot 31.1 71 0.0015 29.7 4.1 101 113-216 306-409 (462)
340 cd06562 GH20_HexA_HexB-like Be 31.1 1.6E+02 0.0034 26.4 6.4 27 130-156 71-98 (348)
341 PLN03129 NADP-dependent malic 31.0 32 0.00069 33.1 1.9 106 116-228 323-444 (581)
342 cd00954 NAL N-Acetylneuraminic 30.8 1.9E+02 0.0042 24.9 6.7 89 125-223 17-107 (288)
343 cd01523 RHOD_Lact_B Member of 30.4 1.1E+02 0.0025 21.2 4.4 29 111-145 60-88 (100)
344 KOG1199 Short-chain alcohol de 30.2 2E+02 0.0043 23.4 5.9 69 112-184 7-82 (260)
345 cd07225 Pat_PNPLA6_PNPLA7 Pata 30.1 81 0.0018 27.7 4.2 33 175-208 33-65 (306)
346 TIGR01287 nifH nitrogenase iro 30.1 1E+02 0.0022 26.2 4.9 37 120-156 6-42 (275)
347 PLN02335 anthranilate synthase 30.0 1.9E+02 0.004 24.1 6.2 86 113-205 18-109 (222)
348 PF09757 Arb2: Arb2 domain; I 30.0 17 0.00037 29.1 0.0 42 112-153 98-150 (178)
349 PF01935 DUF87: Domain of unkn 29.8 86 0.0019 25.8 4.2 36 117-152 26-62 (229)
350 cd02117 NifH_like This family 29.8 1.1E+02 0.0024 24.9 4.8 36 121-156 7-42 (212)
351 TIGR02313 HpaI-NOT-DapA 2,4-di 29.4 2E+02 0.0044 25.0 6.6 26 124-149 16-41 (294)
352 PRK14974 cell division protein 29.4 4.1E+02 0.009 23.7 9.1 72 135-218 215-286 (336)
353 TIGR00041 DTMP_kinase thymidyl 29.4 1.3E+02 0.0027 23.9 5.0 39 114-152 3-41 (195)
354 PF02606 LpxK: Tetraacyldisacc 29.2 1.8E+02 0.004 25.8 6.4 34 124-158 47-80 (326)
355 COG0125 Tmk Thymidylate kinase 29.2 1.2E+02 0.0026 25.1 4.9 41 113-153 2-42 (208)
356 PF08248 Tryp_FSAP: Tryptophyl 29.0 41 0.00088 14.3 1.0 9 54-62 2-10 (12)
357 PF06792 UPF0261: Uncharacteri 28.7 3.2E+02 0.007 25.1 7.8 82 132-216 18-123 (403)
358 TIGR01007 eps_fam capsular exo 28.5 1.5E+02 0.0033 23.8 5.4 36 116-151 19-55 (204)
359 COG2830 Uncharacterized protei 28.5 71 0.0015 25.6 3.1 77 113-221 11-88 (214)
360 cd01521 RHOD_PspE2 Member of t 28.4 1.7E+02 0.0036 20.9 5.1 35 111-149 63-97 (110)
361 KOG0635 Adenosine 5'-phosphosu 28.4 3.1E+02 0.0066 21.9 6.8 40 112-151 29-68 (207)
362 COG1448 TyrB Aspartate/tyrosin 28.3 4.7E+02 0.01 24.0 9.5 89 113-223 171-265 (396)
363 TIGR01969 minD_arch cell divis 28.3 1.1E+02 0.0025 25.2 4.8 26 127-152 14-39 (251)
364 PRK10279 hypothetical protein; 28.2 86 0.0019 27.5 4.0 32 175-207 23-54 (300)
365 PRK06895 putative anthranilate 28.2 3.1E+02 0.0067 21.9 8.0 72 129-205 12-90 (190)
366 COG2240 PdxK Pyridoxal/pyridox 28.2 2.2E+02 0.0047 24.9 6.3 64 118-193 10-81 (281)
367 TIGR00959 ffh signal recogniti 28.2 1E+02 0.0022 28.5 4.7 39 112-150 97-136 (428)
368 PRK10416 signal recognition pa 28.0 4E+02 0.0086 23.5 8.3 20 136-155 190-209 (318)
369 PRK06114 short chain dehydroge 27.9 2.3E+02 0.005 23.4 6.6 65 116-184 10-85 (254)
370 cd07207 Pat_ExoU_VipD_like Exo 27.8 1E+02 0.0022 24.5 4.2 34 174-208 16-49 (194)
371 cd00951 KDGDH 5-dehydro-4-deox 27.7 2.2E+02 0.0048 24.6 6.6 89 125-223 17-105 (289)
372 TIGR02884 spore_pdaA delta-lac 27.7 72 0.0016 26.5 3.4 36 113-149 186-221 (224)
373 TIGR00959 ffh signal recogniti 27.7 4.5E+02 0.0098 24.4 8.8 22 134-155 174-195 (428)
374 cd00229 SGNH_hydrolase SGNH_hy 27.6 2.6E+02 0.0055 20.7 6.7 79 113-194 34-115 (187)
375 cd01844 SGNH_hydrolase_like_6 27.4 2.9E+02 0.0062 21.4 6.7 26 167-192 75-100 (177)
376 PHA02518 ParA-like protein; Pr 27.4 1.7E+02 0.0037 23.4 5.5 29 127-155 14-42 (211)
377 PF00326 Peptidase_S9: Prolyl 27.3 94 0.002 25.0 4.0 44 112-155 143-187 (213)
378 PRK14974 cell division protein 27.2 1.3E+02 0.0028 26.9 5.0 38 112-149 138-175 (336)
379 PRK07856 short chain dehydroge 27.1 1.7E+02 0.0036 24.2 5.6 65 116-184 8-74 (252)
380 TIGR03131 malonate_mdcH malona 26.9 1.1E+02 0.0023 26.4 4.5 22 184-205 74-95 (295)
381 PF06866 DUF1256: Protein of u 26.9 2.4E+02 0.0053 22.4 5.9 31 167-197 68-98 (163)
382 PRK02399 hypothetical protein; 26.9 4.6E+02 0.01 24.2 8.4 29 186-216 97-125 (406)
383 PRK06179 short chain dehydroge 26.8 2.6E+02 0.0056 23.2 6.8 65 116-184 6-72 (270)
384 cd03115 SRP The signal recogni 26.8 1.1E+02 0.0023 23.9 4.1 36 116-151 2-37 (173)
385 cd02034 CooC The accessory pro 26.7 1.1E+02 0.0023 22.6 3.8 34 117-150 2-35 (116)
386 PRK13185 chlL protochlorophyll 26.6 1.4E+02 0.0029 25.3 5.0 40 116-156 5-44 (270)
387 PRK06398 aldose dehydrogenase; 26.5 2.9E+02 0.0064 22.9 7.0 63 116-185 8-72 (258)
388 PRK09435 membrane ATPase/prote 26.4 1.2E+02 0.0027 27.0 4.8 39 112-150 54-92 (332)
389 COG1506 DAP2 Dipeptidyl aminop 26.4 3E+02 0.0065 26.8 7.8 66 113-183 551-617 (620)
390 PF00448 SRP54: SRP54-type pro 26.4 1.2E+02 0.0025 24.7 4.3 74 132-217 73-146 (196)
391 PRK09065 glutamine amidotransf 26.3 3.9E+02 0.0084 22.3 8.3 36 167-206 72-107 (237)
392 PTZ00062 glutaredoxin; Provisi 26.2 3.7E+02 0.008 22.1 8.6 82 112-209 112-193 (204)
393 TIGR01968 minD_bact septum sit 26.2 1.3E+02 0.0029 24.9 4.8 37 116-152 4-40 (261)
394 COG1341 Predicted GTPase or GT 26.2 1.1E+02 0.0023 28.1 4.3 46 112-158 71-116 (398)
395 PF00004 AAA: ATPase family as 26.2 1.6E+02 0.0034 21.2 4.7 56 117-182 1-56 (132)
396 COG1089 Gmd GDP-D-mannose dehy 26.1 2.1E+02 0.0046 25.3 5.8 35 116-154 4-38 (345)
397 PRK07053 glutamine amidotransf 26.1 3.9E+02 0.0085 22.3 9.9 83 114-205 4-101 (234)
398 cd01518 RHOD_YceA Member of th 26.1 1.4E+02 0.0031 20.8 4.3 32 112-149 61-93 (101)
399 TIGR03249 KdgD 5-dehydro-4-deo 26.0 2.7E+02 0.0059 24.1 6.8 90 124-223 21-110 (296)
400 cd03028 GRX_PICOT_like Glutare 25.8 2.3E+02 0.0049 19.5 8.6 81 112-208 7-87 (90)
401 cd07210 Pat_hypo_W_succinogene 25.8 1.3E+02 0.0028 25.0 4.5 32 175-207 18-49 (221)
402 PF15660 Imm49: Immunity prote 25.8 85 0.0018 20.6 2.7 16 166-181 67-82 (84)
403 PRK03620 5-dehydro-4-deoxygluc 25.6 2.7E+02 0.0059 24.2 6.8 88 125-223 24-111 (303)
404 PRK13700 conjugal transfer pro 25.4 1.1E+02 0.0023 30.5 4.4 38 116-153 187-224 (732)
405 TIGR02016 BchX chlorophyllide 25.4 1.2E+02 0.0026 26.5 4.4 38 116-154 3-40 (296)
406 TIGR02759 TraD_Ftype type IV c 25.3 1.1E+02 0.0023 29.6 4.4 38 116-153 178-215 (566)
407 cd02028 UMPK_like Uridine mono 25.3 2.4E+02 0.0052 22.4 5.9 38 116-153 1-38 (179)
408 PRK08220 2,3-dihydroxybenzoate 25.2 2.8E+02 0.0061 22.6 6.6 63 117-184 11-75 (252)
409 cd03527 RuBisCO_small Ribulose 25.2 2.7E+02 0.0058 20.1 7.9 64 131-194 17-84 (99)
410 smart00827 PKS_AT Acyl transfe 25.0 1.2E+02 0.0026 26.0 4.4 25 182-206 78-102 (298)
411 cd07218 Pat_iPLA2 Calcium-inde 24.9 1.3E+02 0.0029 25.4 4.5 19 190-208 34-52 (245)
412 TIGR01281 DPOR_bchL light-inde 24.9 1.5E+02 0.0033 24.9 5.0 35 121-155 7-41 (268)
413 TIGR00365 monothiol glutaredox 24.8 2.5E+02 0.0055 19.8 8.5 82 112-209 11-92 (97)
414 cd07212 Pat_PNPLA9 Patatin-lik 24.8 1.2E+02 0.0027 26.6 4.4 19 189-207 35-53 (312)
415 cd07224 Pat_like Patatin-like 24.5 1.3E+02 0.0028 25.2 4.3 34 175-208 17-51 (233)
416 PRK10867 signal recognition pa 24.3 5.8E+02 0.013 23.7 9.1 22 134-155 175-196 (433)
417 PRK12745 3-ketoacyl-(acyl-carr 24.3 3.6E+02 0.0079 22.0 7.2 65 116-184 4-79 (256)
418 PF10561 UPF0565: Uncharacteri 24.2 58 0.0013 28.7 2.2 24 185-208 192-215 (303)
419 cd04501 SGNH_hydrolase_like_4 24.1 3.4E+02 0.0074 21.0 6.9 72 115-192 32-103 (183)
420 PRK13236 nitrogenase reductase 24.1 1.5E+02 0.0032 25.8 4.8 42 115-156 7-48 (296)
421 cd07227 Pat_Fungal_NTE1 Fungal 24.0 1.3E+02 0.0027 26.0 4.2 32 175-207 28-59 (269)
422 PF13439 Glyco_transf_4: Glyco 23.9 2.9E+02 0.0063 20.5 6.1 28 127-154 14-41 (177)
423 PRK00652 lpxK tetraacyldisacch 23.7 1.7E+02 0.0038 26.0 5.2 33 124-157 61-93 (325)
424 cd07208 Pat_hypo_Ecoli_yjju_li 23.6 1.3E+02 0.0028 25.5 4.2 35 175-209 16-50 (266)
425 TIGR00683 nanA N-acetylneurami 23.5 2.8E+02 0.0061 24.0 6.4 89 125-223 17-107 (290)
426 PRK13705 plasmid-partitioning 23.4 1.9E+02 0.0041 26.4 5.5 44 113-156 105-150 (388)
427 TIGR03453 partition_RepA plasm 23.4 1.7E+02 0.0036 26.5 5.2 40 115-154 105-145 (387)
428 TIGR01425 SRP54_euk signal rec 23.2 4.9E+02 0.011 24.2 8.1 21 134-154 174-194 (429)
429 cd08205 RuBisCO_IV_RLP Ribulos 23.2 5.6E+02 0.012 23.1 10.2 107 112-226 129-236 (367)
430 cd03145 GAT1_cyanophycinase Ty 23.2 4.3E+02 0.0092 21.7 7.6 90 113-204 29-134 (217)
431 PF02492 cobW: CobW/HypB/UreG, 23.1 93 0.002 24.6 3.1 67 115-183 1-81 (178)
432 PHA02519 plasmid partition pro 23.0 2.4E+02 0.0052 25.7 6.0 44 113-156 105-150 (387)
433 cd01672 TMPK Thymidine monopho 22.9 1.5E+02 0.0033 23.2 4.4 37 116-152 2-38 (200)
434 cd03818 GT1_ExpC_like This fam 22.9 2E+02 0.0043 25.7 5.6 38 116-157 2-39 (396)
435 cd00952 CHBPH_aldolase Trans-o 22.8 3.1E+02 0.0068 24.0 6.6 90 124-223 24-114 (309)
436 PF08250 Sperm_act_pep: Sperm- 22.7 17 0.00036 14.8 -0.7 6 192-197 1-6 (10)
437 PRK04147 N-acetylneuraminate l 22.7 2.1E+02 0.0046 24.7 5.5 88 125-223 20-109 (293)
438 PF00091 Tubulin: Tubulin/FtsZ 22.6 83 0.0018 25.9 2.8 35 112-146 123-159 (216)
439 PRK13235 nifH nitrogenase redu 22.5 1.8E+02 0.0038 24.8 4.9 39 116-155 4-42 (274)
440 PRK08857 para-aminobenzoate sy 22.5 2.2E+02 0.0047 22.9 5.2 72 129-205 10-90 (193)
441 cd02042 ParA ParA and ParB of 22.4 1.7E+02 0.0037 20.4 4.2 23 129-151 15-37 (104)
442 cd03785 GT1_MurG MurG is an N- 22.4 1E+02 0.0022 26.8 3.5 33 117-149 2-34 (350)
443 KOG3035 Isoamyl acetate-hydrol 22.4 1.6E+02 0.0035 24.7 4.3 75 117-192 40-122 (245)
444 cd01820 PAF_acetylesterase_lik 22.3 2E+02 0.0044 23.2 5.1 28 166-193 109-136 (214)
445 PRK13869 plasmid-partitioning 22.3 2.4E+02 0.0052 25.8 6.0 41 115-155 122-163 (405)
446 TIGR02764 spore_ybaN_pdaB poly 22.3 79 0.0017 25.3 2.6 36 114-149 152-188 (191)
447 TIGR00064 ftsY signal recognit 22.3 1.7E+02 0.0037 25.1 4.8 37 114-150 72-108 (272)
448 TIGR03018 pepcterm_TyrKin exop 22.2 2.5E+02 0.0054 22.7 5.6 40 113-152 35-75 (207)
449 PRK05506 bifunctional sulfate 22.2 1.4E+02 0.003 29.1 4.6 38 112-149 458-495 (632)
450 TIGR02816 pfaB_fam PfaB family 22.0 1.1E+02 0.0025 29.2 3.9 28 181-208 260-287 (538)
451 cd02067 B12-binding B12 bindin 22.0 3.1E+02 0.0068 19.8 6.4 19 131-149 16-34 (119)
452 PRK07667 uridine kinase; Provi 21.9 2E+02 0.0043 23.1 4.9 42 112-153 15-56 (193)
453 PRK08105 flavodoxin; Provision 21.9 3.7E+02 0.0081 20.6 6.9 75 116-192 4-91 (149)
454 TIGR02841 spore_YyaC putative 21.7 3.5E+02 0.0076 20.9 5.7 30 168-197 45-74 (140)
455 cd07228 Pat_NTE_like_bacteria 21.7 1.8E+02 0.0038 22.9 4.5 34 175-209 18-51 (175)
456 PF00698 Acyl_transf_1: Acyl t 21.7 78 0.0017 27.7 2.6 25 182-206 80-104 (318)
457 PF05707 Zot: Zonular occluden 21.6 87 0.0019 25.2 2.7 38 116-154 2-40 (193)
458 PF10566 Glyco_hydro_97: Glyco 21.6 4.9E+02 0.011 22.5 7.4 68 131-200 34-101 (273)
459 COG0607 PspE Rhodanese-related 21.6 1.4E+02 0.003 20.9 3.5 34 111-151 60-93 (110)
460 COG3181 Uncharacterized protei 21.6 1.7E+02 0.0038 25.9 4.7 44 112-155 27-71 (319)
461 KOG1201 Hydroxysteroid 17-beta 21.4 1.5E+02 0.0032 26.1 4.1 66 116-185 40-114 (300)
462 cd07205 Pat_PNPLA6_PNPLA7_NTE1 21.3 1.8E+02 0.004 22.7 4.5 32 175-207 18-49 (175)
463 cd07209 Pat_hypo_Ecoli_Z1214_l 21.3 1.5E+02 0.0032 24.3 4.1 33 175-208 16-48 (215)
464 cd06570 GH20_chitobiase-like_1 21.3 3.1E+02 0.0066 24.2 6.2 28 129-156 68-96 (311)
465 TIGR00674 dapA dihydrodipicoli 21.3 3.6E+02 0.0079 23.1 6.7 89 125-223 15-104 (285)
466 PF03709 OKR_DC_1_N: Orn/Lys/A 21.2 3E+02 0.0066 20.0 5.4 66 130-195 5-77 (115)
467 TIGR03029 EpsG chain length de 21.2 2.3E+02 0.005 23.9 5.4 38 114-151 104-141 (274)
468 cd01444 GlpE_ST GlpE sulfurtra 21.1 2.2E+02 0.0048 19.3 4.5 31 112-148 56-87 (96)
469 PRK01906 tetraacyldisaccharide 21.1 2.1E+02 0.0047 25.5 5.2 33 124-157 68-100 (338)
470 TIGR03574 selen_PSTK L-seryl-t 21.0 1.1E+02 0.0025 25.6 3.4 34 116-149 1-34 (249)
471 PF08357 SEFIR: SEFIR domain; 21.0 1E+02 0.0022 23.4 2.9 35 115-150 2-37 (150)
472 cd02038 FleN-like FleN is a me 20.9 2.4E+02 0.0052 21.2 4.9 39 116-154 2-40 (139)
473 cd00408 DHDPS-like Dihydrodipi 20.8 3.6E+02 0.0078 22.9 6.5 87 127-223 16-103 (281)
474 TIGR00750 lao LAO/AO transport 20.8 1.9E+02 0.0042 25.1 4.9 38 113-150 33-70 (300)
475 PF10412 TrwB_AAD_bind: Type I 20.7 93 0.002 28.3 2.9 36 117-152 18-53 (386)
476 PF04204 HTS: Homoserine O-suc 20.7 3.2E+02 0.0069 24.0 6.0 58 139-205 95-152 (298)
477 cd03820 GT1_amsD_like This fam 20.6 2E+02 0.0044 24.0 5.0 39 115-153 2-41 (348)
478 smart00864 Tubulin Tubulin/Fts 20.5 2E+02 0.0043 23.1 4.6 30 114-143 84-113 (192)
479 cd04950 GT1_like_1 Glycosyltra 20.4 2.3E+02 0.0049 25.2 5.4 40 113-153 4-44 (373)
480 cd01741 GATase1_1 Subgroup of 20.3 4.3E+02 0.0094 20.8 8.6 36 166-205 64-99 (188)
481 PLN02289 ribulose-bisphosphate 20.3 4.6E+02 0.01 21.0 7.2 79 112-194 66-160 (176)
482 COG0400 Predicted esterase [Ge 20.2 4.9E+02 0.011 21.4 7.1 41 111-151 144-185 (207)
483 KOG4153 Fructose 1,6-bisphosph 20.2 1.9E+02 0.0042 25.0 4.4 35 110-149 254-288 (358)
484 KOG1610 Corticosteroid 11-beta 20.1 3.6E+02 0.0078 24.0 6.2 68 116-189 31-108 (322)
485 PRK09004 FMN-binding protein M 20.1 4.1E+02 0.0088 20.3 6.9 75 116-192 4-89 (146)
486 KOG0781 Signal recognition par 20.0 4.4E+02 0.0095 25.1 6.9 75 118-205 443-517 (587)
No 1
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=100.00 E-value=1.8e-41 Score=298.73 Aligned_cols=224 Identities=38% Similarity=0.715 Sum_probs=198.8
Q ss_pred ccccceeeeeecccCCCCCCCCCCceeeccch-hchhhhccccCCCCCCCCCCCCchhHHHHHhhhhcCCCCCCcceEEE
Q 024826 11 RLIRPITSVHVSTKAMPYNHPHPSLEVTGGAL-HTFLPALKTLSRPYSPFPVIGWNCHVETIFAAFFRSLPDVKLKRECI 89 (262)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~y~p~p~~~~~~~~qt~~~~~~~~~~~~~~~r~~i 89 (262)
.++.=+..+..+-.++++...++.....++.+ +.++++|+.++++|.| .+|+++||+||++..++++.+.++|+|+++
T Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~f~~~l~~~~~~l~~~y~p-~~w~~~ghlQT~~~~~~~~~p~~~y~Reii 98 (409)
T KOG1838|consen 20 GLLIGVAVVLYAFLYLKSPPRKPSLFCGDSGFARFLVPKCPLLEEKYLP-TLWLFSGHLQTLLLSFFGSKPPVEYTREII 98 (409)
T ss_pred HHhhhhheeeeecceeeccCCCCeeecCchHHHHHHHhhcccccccccc-ceeecCCeeeeeehhhcCCCCCCcceeEEE
Confidence 33333444446667888888888888776665 6789999999999999 555699999999999999999999999999
Q ss_pred EcCCCCeEEEEeecCCCCCC---CCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCc
Q 024826 90 RTKDDGSVALDWISGDHQLL---PPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSA 166 (262)
Q Consensus 90 ~~~dg~~i~l~~~~~~~~~~---~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~ 166 (262)
+++|||++++||+.+.+... ....|+||++||++|+|++.|+++++..+.+.||+|+++|.||||+++.++++.++.
T Consensus 99 ~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtTpr~f~a 178 (409)
T KOG1838|consen 99 KTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTTPRLFTA 178 (409)
T ss_pred EeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCCCceeec
Confidence 99999999999997654322 356799999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHHHHHHHHhc
Q 024826 167 SFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVIADQDFRML 235 (262)
Q Consensus 167 ~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~~~~~~~~ 235 (262)
++++|+++++++++++||+++++++|+||||+++++|++|.++++++.+++++|+|||+....+.++..
T Consensus 179 g~t~Dl~~~v~~i~~~~P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~~~~~ 247 (409)
T KOG1838|consen 179 GWTEDLREVVNHIKKRYPQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRSIETP 247 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999987666655553
No 2
>PLN02511 hydrolase
Probab=100.00 E-value=3.9e-36 Score=271.86 Aligned_cols=207 Identities=71% Similarity=1.265 Sum_probs=180.9
Q ss_pred CCCCCCceeeccchhchhhhccccCCCCCCCCCCCCchhHHHHHhhhhcCCCCCCcceEEEEcCCCCeEEEEeecCCCCC
Q 024826 29 NHPHPSLEVTGGALHTFLPALKTLSRPYSPFPVIGWNCHVETIFAAFFRSLPDVKLKRECIRTKDDGSVALDWISGDHQL 108 (262)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~~y~p~p~~~~~~~~qt~~~~~~~~~~~~~~~r~~i~~~dg~~i~l~~~~~~~~~ 108 (262)
..++...++.++..+.++++|+.|.++|.|+||+ .|+|+||++..+++..+.+.++|+.+.++||+.+.+||.......
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~y~p~~wl-~n~h~qT~~~~~~~~~~~~~~~re~l~~~DG~~~~ldw~~~~~~~ 95 (388)
T PLN02511 17 TREHSSLEVIGGGRDSFLPKFKSLERPYDAFPLL-GNRHVETIFASFFRSLPAVRYRRECLRTPDGGAVALDWVSGDDRA 95 (388)
T ss_pred cCCccceeeccchHHHHHHhhhhhcCCccCCccC-CCccHHHhhHHHhcCCCCCceeEEEEECCCCCEEEEEecCccccc
Confidence 3456677777777888999999999999998775 899999999999988888999999999999999999998643222
Q ss_pred CCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcE
Q 024826 109 LPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHL 188 (262)
Q Consensus 109 ~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i 188 (262)
.+.++|+||++||++|++.+.|+..++..+.++||+|+++|+||||+|+...+..+..++++|+.++++++..++++.++
T Consensus 96 ~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~~~~~~~ 175 (388)
T PLN02511 96 LPADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVTTPQFYSASFTGDLRQVVDHVAGRYPSANL 175 (388)
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCCCcCEEcCCchHHHHHHHHHHHHHCCCCCE
Confidence 34468999999999999887788888888889999999999999999988777777889999999999999999998899
Q ss_pred EEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHHHHHHHHhcc
Q 024826 189 YAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVIADQDFRMLF 236 (262)
Q Consensus 189 ~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~~~~~~~~~ 236 (262)
+++||||||+++++|+++++++..|.+++++++|+++..+...+..++
T Consensus 176 ~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~~~~ 223 (388)
T PLN02511 176 YAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFHKGF 223 (388)
T ss_pred EEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHhccH
Confidence 999999999999999999998777999999999999866655555543
No 3
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=100.00 E-value=2e-35 Score=252.33 Aligned_cols=183 Identities=36% Similarity=0.697 Sum_probs=171.1
Q ss_pred CCCCCCCCCCCCchhHHHHHh--hhhcCCCCCCcceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHH
Q 024826 53 SRPYSPFPVIGWNCHVETIFA--AFFRSLPDVKLKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSY 130 (262)
Q Consensus 53 ~~~y~p~p~~~~~~~~qt~~~--~~~~~~~~~~~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y 130 (262)
..+|.|.||+++|||+||++. ..+++...+.++||.+.++||+.+.+||..++. ...+|+||++||++|++++.|
T Consensus 16 ~~~f~p~~~~L~ng~lqTl~~~~~~frr~~~~~~~re~v~~pdg~~~~ldw~~~p~---~~~~P~vVl~HGL~G~s~s~y 92 (345)
T COG0429 16 SPPFDPLPWGLFNGHLQTLYPSLRLFRRKPKVAYTRERLETPDGGFIDLDWSEDPR---AAKKPLVVLFHGLEGSSNSPY 92 (345)
T ss_pred cCcCCCCcccccCcchhhhhhhHHHhhcccccccceEEEEcCCCCEEEEeeccCcc---ccCCceEEEEeccCCCCcCHH
Confidence 356777788889999999999 568999999999999999999999999998642 346799999999999999999
Q ss_pred HHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCC
Q 024826 131 VRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHS 210 (262)
Q Consensus 131 ~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~ 210 (262)
++.+...+.++||.+|++|.|||+++..+++..|+.+++.|++.++++++..+++++++++|+|+||+++++|+++++++
T Consensus 93 ~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~~r~~~avG~SLGgnmLa~ylgeeg~d 172 (345)
T COG0429 93 ARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFPPRPLYAVGFSLGGNMLANYLGEEGDD 172 (345)
T ss_pred HHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHHHHhCCCCceEEEEecccHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEcCCcChHHHHHHHHhccch
Q 024826 211 CPLSGAVSLCNPFNLVIADQDFRMLFSL 238 (262)
Q Consensus 211 ~~i~~~v~l~~p~~~~~~~~~~~~~~~~ 238 (262)
+++.+++++|+|+|+..+...+.++|..
T Consensus 173 ~~~~aa~~vs~P~Dl~~~~~~l~~~~s~ 200 (345)
T COG0429 173 LPLDAAVAVSAPFDLEACAYRLDSGFSL 200 (345)
T ss_pred cccceeeeeeCHHHHHHHHHHhcCchhh
Confidence 9999999999999999999999998883
No 4
>PRK10985 putative hydrolase; Provisional
Probab=99.98 E-value=1.3e-30 Score=230.78 Aligned_cols=180 Identities=25% Similarity=0.409 Sum_probs=155.9
Q ss_pred CCCCCCCCCCCchhHHHHHhhhhcCCCCCCcceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHH
Q 024826 54 RPYSPFPVIGWNCHVETIFAAFFRSLPDVKLKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRH 133 (262)
Q Consensus 54 ~~y~p~p~~~~~~~~qt~~~~~~~~~~~~~~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~ 133 (262)
.+|.|+||+ .|+|+||++..++++.+.+.+.++.+.++||+.+.++|..... ....+|+||++||++|++.+.|+..
T Consensus 2 ~~~~p~~~~-~~~h~qt~~~~~~~~~~~~~~~~~~~~~~dg~~~~l~w~~~~~--~~~~~p~vll~HG~~g~~~~~~~~~ 78 (324)
T PRK10985 2 AEFTPMRGA-SNPHLQTLLPRLIRRKVLFTPYWQRLELPDGDFVDLAWSEDPA--QARHKPRLVLFHGLEGSFNSPYAHG 78 (324)
T ss_pred CCCCCCcCC-CCCcHHHhhHHHhcCCCCCCcceeEEECCCCCEEEEecCCCCc--cCCCCCEEEEeCCCCCCCcCHHHHH
Confidence 579998765 9999999999999888888999999999999999999975432 2335799999999999887778888
Q ss_pred HHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCC
Q 024826 134 MLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPL 213 (262)
Q Consensus 134 ~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i 213 (262)
++..+.++||+|+++|+||||+++...+..+..+.++|+.+++++++++++..+++++||||||.+++.|+++++++..+
T Consensus 79 ~~~~l~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~ 158 (324)
T PRK10985 79 LLEAAQKRGWLGVVMHFRGCSGEPNRLHRIYHSGETEDARFFLRWLQREFGHVPTAAVGYSLGGNMLACLLAKEGDDLPL 158 (324)
T ss_pred HHHHHHHCCCEEEEEeCCCCCCCccCCcceECCCchHHHHHHHHHHHHhCCCCCEEEEEecchHHHHHHHHHhhCCCCCc
Confidence 89999999999999999999988766566666778999999999999988888999999999999999999998766568
Q ss_pred ceEEEEcCCcChHHHHHHHHhcc
Q 024826 214 SGAVSLCNPFNLVIADQDFRMLF 236 (262)
Q Consensus 214 ~~~v~l~~p~~~~~~~~~~~~~~ 236 (262)
+++|++++|+++..+...+...+
T Consensus 159 ~~~v~i~~p~~~~~~~~~~~~~~ 181 (324)
T PRK10985 159 DAAVIVSAPLMLEACSYRMEQGF 181 (324)
T ss_pred cEEEEEcCCCCHHHHHHHHhhhH
Confidence 99999999999887776665543
No 5
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.79 E-value=3.1e-18 Score=151.74 Aligned_cols=138 Identities=12% Similarity=0.116 Sum_probs=105.6
Q ss_pred CCcceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCc
Q 024826 82 VKLKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTP 161 (262)
Q Consensus 82 ~~~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~ 161 (262)
+.++...+...||..+.+....+++ ..+.+++||++||++++.. .+...++..+.++||+|+++|+||||.|+....
T Consensus 30 ~~~~~~~~~~~dg~~l~~~~~~~~~--~~~~~~~VvllHG~~~~~~-~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~~~~~ 106 (330)
T PLN02298 30 IKGSKSFFTSPRGLSLFTRSWLPSS--SSPPRALIFMVHGYGNDIS-WTFQSTAIFLAQMGFACFALDLEGHGRSEGLRA 106 (330)
T ss_pred CccccceEEcCCCCEEEEEEEecCC--CCCCceEEEEEcCCCCCcc-eehhHHHHHHHhCCCEEEEecCCCCCCCCCccc
Confidence 4567778888999988885433321 1135788999999975542 334566777888999999999999999974322
Q ss_pred C-CCCcCcHHHHHHHHHHHHhh--CCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 162 Q-FYSASFLGDMQEVVAHVGSK--YPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 162 ~-~~~~~~~~Dl~~~l~~l~~~--~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
. .....+++|+.++++++... ++..+++++||||||.+++.++.++|+. ++++|++++..+
T Consensus 107 ~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~--v~~lvl~~~~~~ 170 (330)
T PLN02298 107 YVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEG--FDGAVLVAPMCK 170 (330)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCccc--ceeEEEeccccc
Confidence 1 22356788999999999864 3445899999999999999999999988 999999988654
No 6
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.78 E-value=9e-18 Score=150.07 Aligned_cols=137 Identities=11% Similarity=0.147 Sum_probs=103.1
Q ss_pred CCCcceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCC
Q 024826 81 DVKLKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTT 160 (262)
Q Consensus 81 ~~~~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~ 160 (262)
.+.+++.+....||..+......+.+ .+.+++||++||++++.. .|+..++..+.++||+|+++|+||||.|+...
T Consensus 58 ~~~~~~~~~~~~~g~~l~~~~~~p~~---~~~~~~iv~lHG~~~~~~-~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~ 133 (349)
T PLN02385 58 GIKTEESYEVNSRGVEIFSKSWLPEN---SRPKAAVCFCHGYGDTCT-FFFEGIARKIASSGYGVFAMDYPGFGLSEGLH 133 (349)
T ss_pred CcceeeeeEEcCCCCEEEEEEEecCC---CCCCeEEEEECCCCCccc-hHHHHHHHHHHhCCCEEEEecCCCCCCCCCCC
Confidence 34455556666788776554333321 135789999999976554 44567788888899999999999999998643
Q ss_pred cCC-CCcCcHHHHHHHHHHHHhh--CCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 161 PQF-YSASFLGDMQEVVAHVGSK--YPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 161 ~~~-~~~~~~~Dl~~~l~~l~~~--~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
... ...++++|+.++++.+... ++..+++++||||||.+++.++.++|+. ++++|++++..
T Consensus 134 ~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~--v~glVLi~p~~ 197 (349)
T PLN02385 134 GYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNA--WDGAILVAPMC 197 (349)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcch--hhheeEecccc
Confidence 221 2356788888888888653 3455899999999999999999999998 99999998754
No 7
>PHA02857 monoglyceride lipase; Provisional
Probab=99.77 E-value=9.1e-18 Score=144.76 Aligned_cols=129 Identities=17% Similarity=0.218 Sum_probs=100.4
Q ss_pred EEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCC-CCc
Q 024826 88 CIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQF-YSA 166 (262)
Q Consensus 88 ~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~-~~~ 166 (262)
++..+||-.+.+.+..+.+ ..+++|+++||+++++. . +..++..+.+.||+|+++|+||||.|+...... ...
T Consensus 4 ~~~~~~g~~l~~~~~~~~~----~~~~~v~llHG~~~~~~-~-~~~~~~~l~~~g~~via~D~~G~G~S~~~~~~~~~~~ 77 (276)
T PHA02857 4 CMFNLDNDYIYCKYWKPIT----YPKALVFISHGAGEHSG-R-YEELAENISSLGILVFSHDHIGHGRSNGEKMMIDDFG 77 (276)
T ss_pred eeecCCCCEEEEEeccCCC----CCCEEEEEeCCCccccc-h-HHHHHHHHHhCCCEEEEccCCCCCCCCCccCCcCCHH
Confidence 3456789888887555531 25688888899976654 3 477888998999999999999999997532111 114
Q ss_pred CcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 167 SFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 167 ~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
.+.+|+.+.++.++..++..+++++||||||.+++.++..+|+. ++++|++++..+
T Consensus 78 ~~~~d~~~~l~~~~~~~~~~~~~lvG~S~GG~ia~~~a~~~p~~--i~~lil~~p~~~ 133 (276)
T PHA02857 78 VYVRDVVQHVVTIKSTYPGVPVFLLGHSMGATISILAAYKNPNL--FTAMILMSPLVN 133 (276)
T ss_pred HHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHhCccc--cceEEEeccccc
Confidence 45677888888777777777999999999999999999999987 999999998654
No 8
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.76 E-value=2.9e-17 Score=140.95 Aligned_cols=131 Identities=14% Similarity=0.073 Sum_probs=99.1
Q ss_pred EEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCc--HHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCC
Q 024826 88 CIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSED--SYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYS 165 (262)
Q Consensus 88 ~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~--~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~ 165 (262)
+++.++|..+...+...+. ..+|+||++||+++.... ..+..++..+.++||+|+.+|+||||.|+........
T Consensus 4 ~l~~~~g~~~~~~~~p~~~----~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~~~~~ 79 (266)
T TIGR03101 4 FLDAPHGFRFCLYHPPVAV----GPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDFAAARW 79 (266)
T ss_pred EecCCCCcEEEEEecCCCC----CCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCccccCCH
Confidence 4555666655544433321 246899999998764432 2335567888889999999999999999754333333
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcCh
Q 024826 166 ASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNL 225 (262)
Q Consensus 166 ~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~ 225 (262)
..+.+|+.++++++++. +..+++++||||||.+++.++.++++. ++++|++++..+.
T Consensus 80 ~~~~~Dv~~ai~~L~~~-~~~~v~LvG~SmGG~vAl~~A~~~p~~--v~~lVL~~P~~~g 136 (266)
T TIGR03101 80 DVWKEDVAAAYRWLIEQ-GHPPVTLWGLRLGALLALDAANPLAAK--CNRLVLWQPVVSG 136 (266)
T ss_pred HHHHHHHHHHHHHHHhc-CCCCEEEEEECHHHHHHHHHHHhCccc--cceEEEeccccch
Confidence 56789999999999875 456899999999999999999999887 9999999887663
No 9
>PRK10749 lysophospholipase L2; Provisional
Probab=99.76 E-value=1.5e-17 Score=147.54 Aligned_cols=130 Identities=17% Similarity=0.232 Sum_probs=99.1
Q ss_pred ceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcC--
Q 024826 85 KRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQ-- 162 (262)
Q Consensus 85 ~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~-- 162 (262)
+...+...||..+.+....+. .++++||++||++++.. .| ..++..+.+.||+|+++|+||||.|+.....
T Consensus 31 ~~~~~~~~~g~~l~~~~~~~~-----~~~~~vll~HG~~~~~~-~y-~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~ 103 (330)
T PRK10749 31 EEAEFTGVDDIPIRFVRFRAP-----HHDRVVVICPGRIESYV-KY-AELAYDLFHLGYDVLIIDHRGQGRSGRLLDDPH 103 (330)
T ss_pred cceEEEcCCCCEEEEEEccCC-----CCCcEEEEECCccchHH-HH-HHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCCC
Confidence 344555677866655543332 25678999999966543 34 5677778899999999999999999753221
Q ss_pred ----CCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 163 ----FYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 163 ----~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
....++++|+.++++.+...++..+++++||||||.+++.++.++|+. ++++|++++..
T Consensus 104 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~~p~~--v~~lvl~~p~~ 166 (330)
T PRK10749 104 RGHVERFNDYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQRHPGV--FDAIALCAPMF 166 (330)
T ss_pred cCccccHHHHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHhCCCC--cceEEEECchh
Confidence 123567889999998887666677999999999999999999999998 99999888754
No 10
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.76 E-value=1.4e-17 Score=145.48 Aligned_cols=135 Identities=21% Similarity=0.335 Sum_probs=108.4
Q ss_pred cceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCC-CCCcC
Q 024826 84 LKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSP-VTTPQ 162 (262)
Q Consensus 84 ~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~-~~~~~ 162 (262)
..+..+...||..+.+.-..+.. +.+.+||++||++.++. .| ..++..+..+||.|+++|+||||.|. .....
T Consensus 9 ~~~~~~~~~d~~~~~~~~~~~~~----~~~g~Vvl~HG~~Eh~~-ry-~~la~~l~~~G~~V~~~D~RGhG~S~r~~rg~ 82 (298)
T COG2267 9 RTEGYFTGADGTRLRYRTWAAPE----PPKGVVVLVHGLGEHSG-RY-EELADDLAARGFDVYALDLRGHGRSPRGQRGH 82 (298)
T ss_pred cccceeecCCCceEEEEeecCCC----CCCcEEEEecCchHHHH-HH-HHHHHHHHhCCCEEEEecCCCCCCCCCCCcCC
Confidence 45666777888877766444332 13489999999987665 44 67899999999999999999999997 32222
Q ss_pred C-CCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChH
Q 024826 163 F-YSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLV 226 (262)
Q Consensus 163 ~-~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~ 226 (262)
. ....+.+|+.++++.+...++..+++++||||||.+++.|+.+++.. |+++|+.+|.+.+.
T Consensus 83 ~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~--i~~~vLssP~~~l~ 145 (298)
T COG2267 83 VDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPR--IDGLVLSSPALGLG 145 (298)
T ss_pred chhHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCcc--ccEEEEECccccCC
Confidence 2 23677889999999999878888999999999999999999999976 99999888877765
No 11
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.75 E-value=3.3e-17 Score=143.39 Aligned_cols=134 Identities=19% Similarity=0.263 Sum_probs=98.9
Q ss_pred cCCCCCCcceEEEEcCC--CCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCC
Q 024826 77 RSLPDVKLKRECIRTKD--DGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCG 154 (262)
Q Consensus 77 ~~~~~~~~~r~~i~~~d--g~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G 154 (262)
...+.+++....+..++ |+.+.+.|..... +++|+||++||+++++. . +..++..|.+.||+|+++|+||||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~G~----~~~~~lvliHG~~~~~~-~-w~~~~~~L~~~gy~vi~~Dl~G~G 85 (302)
T PRK00870 12 ENLPDYPFAPHYVDVDDGDGGPLRMHYVDEGP----ADGPPVLLLHGEPSWSY-L-YRKMIPILAAAGHRVIAPDLIGFG 85 (302)
T ss_pred cCCcCCCCCceeEeecCCCCceEEEEEEecCC----CCCCEEEEECCCCCchh-h-HHHHHHHHHhCCCEEEEECCCCCC
Confidence 34455555555666654 6666677665321 14678999999976554 3 367778888789999999999999
Q ss_pred CCCCCCc--CCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCC
Q 024826 155 DSPVTTP--QFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNP 222 (262)
Q Consensus 155 ~s~~~~~--~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p 222 (262)
.|+.... .....++++|+.++++.+.. .+++++||||||.++..++.++|+. |.++|++++.
T Consensus 86 ~S~~~~~~~~~~~~~~a~~l~~~l~~l~~----~~v~lvGhS~Gg~ia~~~a~~~p~~--v~~lvl~~~~ 149 (302)
T PRK00870 86 RSDKPTRREDYTYARHVEWMRSWFEQLDL----TDVTLVCQDWGGLIGLRLAAEHPDR--FARLVVANTG 149 (302)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHHHHcCC----CCEEEEEEChHHHHHHHHHHhChhh--eeEEEEeCCC
Confidence 9975422 22336667777777776543 3899999999999999999999998 9999988863
No 12
>PRK13604 luxD acyl transferase; Provisional
Probab=99.74 E-value=1.5e-16 Score=137.80 Aligned_cols=137 Identities=17% Similarity=0.125 Sum_probs=108.7
Q ss_pred ceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCC-CCCCCCCcCC
Q 024826 85 KRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGC-GDSPVTTPQF 163 (262)
Q Consensus 85 ~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~-G~s~~~~~~~ 163 (262)
....+.+.||..+..+|..|++. ...+.++||++||+++.. .+...++.+|.++||.|+.+|+||+ |.|++.....
T Consensus 10 ~~~~~~~~dG~~L~Gwl~~P~~~-~~~~~~~vIi~HGf~~~~--~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~ 86 (307)
T PRK13604 10 IDHVICLENGQSIRVWETLPKEN-SPKKNNTILIASGFARRM--DHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEF 86 (307)
T ss_pred hhheEEcCCCCEEEEEEEcCccc-CCCCCCEEEEeCCCCCCh--HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccC
Confidence 45678889999999999988642 234578999999998854 3357889999999999999999988 8897655444
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHHHH
Q 024826 164 YSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVIAD 229 (262)
Q Consensus 164 ~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~~ 229 (262)
.......|+.++++|++.+. ..+|.++||||||.+++..|++. + ++++|+.||..++....
T Consensus 87 t~s~g~~Dl~aaid~lk~~~-~~~I~LiG~SmGgava~~~A~~~--~--v~~lI~~sp~~~l~d~l 147 (307)
T PRK13604 87 TMSIGKNSLLTVVDWLNTRG-INNLGLIAASLSARIAYEVINEI--D--LSFLITAVGVVNLRDTL 147 (307)
T ss_pred cccccHHHHHHHHHHHHhcC-CCceEEEEECHHHHHHHHHhcCC--C--CCEEEEcCCcccHHHHH
Confidence 44455899999999998864 45899999999999986666532 3 88899999988866443
No 13
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.72 E-value=4.6e-17 Score=138.21 Aligned_cols=140 Identities=13% Similarity=0.141 Sum_probs=109.5
Q ss_pred CCCCCcceEEEEcCCCCeEEEE-eecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCC
Q 024826 79 LPDVKLKRECIRTKDDGSVALD-WISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSP 157 (262)
Q Consensus 79 ~~~~~~~r~~i~~~dg~~i~l~-~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~ 157 (262)
...+.+...+++.++|..+..- |.+... .+.+..|+++||+++.+... ...++..++..||.|+++|++|||.|+
T Consensus 22 ~~~~~~~~~~~~n~rG~~lft~~W~p~~~---~~pr~lv~~~HG~g~~~s~~-~~~~a~~l~~~g~~v~a~D~~GhG~Sd 97 (313)
T KOG1455|consen 22 DGGVTYSESFFTNPRGAKLFTQSWLPLSG---TEPRGLVFLCHGYGEHSSWR-YQSTAKRLAKSGFAVYAIDYEGHGRSD 97 (313)
T ss_pred CCccceeeeeEEcCCCCEeEEEecccCCC---CCCceEEEEEcCCcccchhh-HHHHHHHHHhCCCeEEEeeccCCCcCC
Confidence 3445567788888999776554 544231 24678999999998876534 477889999999999999999999999
Q ss_pred CCCcCCCC-cCcHHHHHHHHHHHHh--hCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 158 VTTPQFYS-ASFLGDMQEVVAHVGS--KYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 158 ~~~~~~~~-~~~~~Dl~~~l~~l~~--~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
+......+ ...++|+.+.++.++. .++.-+.+++||||||.+++.++.++|+. .+++|+++|..-
T Consensus 98 Gl~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~--w~G~ilvaPmc~ 165 (313)
T KOG1455|consen 98 GLHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNF--WDGAILVAPMCK 165 (313)
T ss_pred CCcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcc--cccceeeecccc
Confidence 75443332 5668899999998654 45666999999999999999999999987 999888887654
No 14
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.71 E-value=8.2e-17 Score=139.03 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=90.2
Q ss_pred CCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHH
Q 024826 93 DDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDM 172 (262)
Q Consensus 93 dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl 172 (262)
+|.++.+.....+ +++++||++||+++++. . +..++..+. .+|+|+++|+||||.|+.+........+++|+
T Consensus 10 ~~~~~~~~~~~~~-----~~~~plvllHG~~~~~~-~-w~~~~~~L~-~~~~vi~~Dl~G~G~S~~~~~~~~~~~~~~~~ 81 (276)
T TIGR02240 10 DGQSIRTAVRPGK-----EGLTPLLIFNGIGANLE-L-VFPFIEALD-PDLEVIAFDVPGVGGSSTPRHPYRFPGLAKLA 81 (276)
T ss_pred CCcEEEEEEecCC-----CCCCcEEEEeCCCcchH-H-HHHHHHHhc-cCceEEEECCCCCCCCCCCCCcCcHHHHHHHH
Confidence 5655555332211 24578999999977665 3 356666664 57999999999999998653333447788899
Q ss_pred HHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 173 QEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 173 ~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
.++++.+..+ +++++||||||.+++.++.++|++ |+++|+++++..
T Consensus 82 ~~~i~~l~~~----~~~LvG~S~GG~va~~~a~~~p~~--v~~lvl~~~~~~ 127 (276)
T TIGR02240 82 ARMLDYLDYG----QVNAIGVSWGGALAQQFAHDYPER--CKKLILAATAAG 127 (276)
T ss_pred HHHHHHhCcC----ceEEEEECHHHHHHHHHHHHCHHH--hhheEEeccCCc
Confidence 9888887543 899999999999999999999998 999999988653
No 15
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.70 E-value=1.3e-16 Score=141.74 Aligned_cols=132 Identities=18% Similarity=0.274 Sum_probs=98.4
Q ss_pred EEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHH------------------------HHHHHHHHhCCce
Q 024826 89 IRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYV------------------------RHMLLRARSKGWR 144 (262)
Q Consensus 89 i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~------------------------~~~~~~l~~~G~~ 144 (262)
+...||..+......+++ .+.+|+++||+++++...|+ ..++..+.++||+
T Consensus 2 ~~~~~g~~l~~~~~~~~~-----~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~ 76 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKN-----AIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYS 76 (332)
T ss_pred ccCCCCCeEEEeeeeccC-----CeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCc
Confidence 345678777665443332 67899999999988864443 3468889999999
Q ss_pred EEEEcCCCCCCCCCCCc-CC---CCcCcHHHHHHHHHHHHh-------------------hCC-CCcEEEEEEcHHHHHH
Q 024826 145 VVVFNSRGCGDSPVTTP-QF---YSASFLGDMQEVVAHVGS-------------------KYP-KAHLYAVGWSLGANIL 200 (262)
Q Consensus 145 vv~~d~rG~G~s~~~~~-~~---~~~~~~~Dl~~~l~~l~~-------------------~~~-~~~i~lvG~SlGg~ia 200 (262)
|+++|+||||.|+.... .. ...++++|+.++++.+++ .++ +.|++++||||||.++
T Consensus 77 V~~~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~ 156 (332)
T TIGR01607 77 VYGLDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIA 156 (332)
T ss_pred EEEecccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHH
Confidence 99999999999875422 22 225567888888888765 355 6799999999999999
Q ss_pred HHHHhhcCCC------CCCceEEEEcCCcCh
Q 024826 201 IRYLGHESHS------CPLSGAVSLCNPFNL 225 (262)
Q Consensus 201 ~~~a~~~~~~------~~i~~~v~l~~p~~~ 225 (262)
+.++.++++. ..++++|++++++.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i 187 (332)
T TIGR01607 157 LRLLELLGKSNENNDKLNIKGCISLSGMISI 187 (332)
T ss_pred HHHHHHhccccccccccccceEEEeccceEE
Confidence 9999765431 248898888987643
No 16
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.69 E-value=4.6e-16 Score=135.50 Aligned_cols=102 Identities=16% Similarity=0.243 Sum_probs=82.5
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCc-------CCCCcCcHHHHHHHHHHHHhhCCC
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTP-------QFYSASFLGDMQEVVAHVGSKYPK 185 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~-------~~~~~~~~~Dl~~~l~~l~~~~~~ 185 (262)
.|+||++||+++++. . +..++..+.+. |+|+++|+||+|.|+...+ .....++++|+.++++.+..
T Consensus 29 ~~~vlllHG~~~~~~-~-w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~l~~---- 101 (294)
T PLN02824 29 GPALVLVHGFGGNAD-H-WRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSDVVG---- 101 (294)
T ss_pred CCeEEEECCCCCChh-H-HHHHHHHHHhC-CeEEEEcCCCCCCCCCCccccccccccCCHHHHHHHHHHHHHHhcC----
Confidence 478999999988765 3 35677777655 6999999999999986432 23336777888888887754
Q ss_pred CcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 186 AHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 186 ~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
.+++++||||||.+++.++.++|++ |+++|+++++.
T Consensus 102 ~~~~lvGhS~Gg~va~~~a~~~p~~--v~~lili~~~~ 137 (294)
T PLN02824 102 DPAFVICNSVGGVVGLQAAVDAPEL--VRGVMLINISL 137 (294)
T ss_pred CCeEEEEeCHHHHHHHHHHHhChhh--eeEEEEECCCc
Confidence 3899999999999999999999998 99999998753
No 17
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.69 E-value=8.9e-16 Score=139.14 Aligned_cols=136 Identities=16% Similarity=0.163 Sum_probs=100.2
Q ss_pred cceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCC
Q 024826 84 LKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQF 163 (262)
Q Consensus 84 ~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~ 163 (262)
+....+..+++..+......+.. .+.+++||++||+++++. . +..++..+.++||+|+++|+||||.|+......
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~---~~~~~~Vl~lHG~~~~~~-~-~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~~~~~ 184 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAA---GEMRGILIIIHGLNEHSG-R-YLHFAKQLTSCGFGVYAMDWIGHGGSDGLHGYV 184 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCC---CCCceEEEEECCchHHHH-H-HHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCC
Confidence 34455566677666655433321 235789999999977643 3 367888898999999999999999998643322
Q ss_pred CC-cCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCC-CCCceEEEEcCCcCh
Q 024826 164 YS-ASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHS-CPLSGAVSLCNPFNL 225 (262)
Q Consensus 164 ~~-~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~-~~i~~~v~l~~p~~~ 225 (262)
.. ..+.+|+.++++++...++..+++++||||||.+++.++. +|+. ..++++|+.+|.+++
T Consensus 185 ~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~ 247 (395)
T PLN02652 185 PSLDYVVEDTEAFLEKIRSENPGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRV 247 (395)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECccccc
Confidence 22 4567899999999998877778999999999999998764 5541 238898888876543
No 18
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.68 E-value=6.1e-16 Score=134.77 Aligned_cols=102 Identities=14% Similarity=0.193 Sum_probs=83.7
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAV 191 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lv 191 (262)
++++||++||++++.. . +..++..+.+.+ +|+++|+||+|.|+.+........+++|+.++++.+..+ +++++
T Consensus 26 ~g~~vvllHG~~~~~~-~-w~~~~~~L~~~~-~via~D~~G~G~S~~~~~~~~~~~~a~dl~~ll~~l~~~----~~~lv 98 (295)
T PRK03592 26 EGDPIVFLHGNPTSSY-L-WRNIIPHLAGLG-RCLAPDLIGMGASDKPDIDYTFADHARYLDAWFDALGLD----DVVLV 98 (295)
T ss_pred CCCEEEEECCCCCCHH-H-HHHHHHHHhhCC-EEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCC----CeEEE
Confidence 3578999999976654 3 367777777665 999999999999986544444577788888888887543 89999
Q ss_pred EEcHHHHHHHHHHhhcCCCCCCceEEEEcCC
Q 024826 192 GWSLGANILIRYLGHESHSCPLSGAVSLCNP 222 (262)
Q Consensus 192 G~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p 222 (262)
|||+||.+++.++..+|++ |+++|+++++
T Consensus 99 GhS~Gg~ia~~~a~~~p~~--v~~lil~~~~ 127 (295)
T PRK03592 99 GHDWGSALGFDWAARHPDR--VRGIAFMEAI 127 (295)
T ss_pred EECHHHHHHHHHHHhChhh--eeEEEEECCC
Confidence 9999999999999999998 9999999973
No 19
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.68 E-value=8.4e-16 Score=132.50 Aligned_cols=113 Identities=12% Similarity=0.162 Sum_probs=83.8
Q ss_pred EEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHH--HHHHHHHHhCCceEEEEcCCCCCCCCCCCcCC-CCcCcHHHHH
Q 024826 97 VALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYV--RHMLLRARSKGWRVVVFNSRGCGDSPVTTPQF-YSASFLGDMQ 173 (262)
Q Consensus 97 i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~--~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~-~~~~~~~Dl~ 173 (262)
..+.|.... +.|+||++||++++.. .|. ...+..+.+.||+|+++|+||+|.|+...... ....+++|+.
T Consensus 20 ~~~~y~~~g------~~~~ivllHG~~~~~~-~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l~ 92 (282)
T TIGR03343 20 FRIHYNEAG------NGEAVIMLHGGGPGAG-GWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVK 92 (282)
T ss_pred eeEEEEecC------CCCeEEEECCCCCchh-hHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCcCcccccchhHHHHH
Confidence 556665433 3577999999876544 221 13345666789999999999999997542221 1224567787
Q ss_pred HHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCC
Q 024826 174 EVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNP 222 (262)
Q Consensus 174 ~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p 222 (262)
++++.+..+ +++++||||||.+++.++.++|++ ++++|+++++
T Consensus 93 ~~l~~l~~~----~~~lvG~S~Gg~ia~~~a~~~p~~--v~~lvl~~~~ 135 (282)
T TIGR03343 93 GLMDALDIE----KAHLVGNSMGGATALNFALEYPDR--IGKLILMGPG 135 (282)
T ss_pred HHHHHcCCC----CeeEEEECchHHHHHHHHHhChHh--hceEEEECCC
Confidence 777776543 899999999999999999999998 9999999874
No 20
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.65 E-value=3.8e-15 Score=127.25 Aligned_cols=105 Identities=22% Similarity=0.380 Sum_probs=79.2
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcC---CCCcCcHHHHHHHHHHHHhhCCCCcE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQ---FYSASFLGDMQEVVAHVGSKYPKAHL 188 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~---~~~~~~~~Dl~~~l~~l~~~~~~~~i 188 (262)
.+++||++||+.|++. .+...+...+.+.||+|+++|+||+|.|+..... .....+++|+.++++.+.. .++
T Consensus 24 ~~~~vl~~hG~~g~~~-~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 98 (288)
T TIGR01250 24 EKIKLLLLHGGPGMSH-EYLENLRELLKEEGREVIMYDQLGCGYSDQPDDSDELWTIDYFVDELEEVREKLGL----DKF 98 (288)
T ss_pred CCCeEEEEcCCCCccH-HHHHHHHHHHHhcCCEEEEEcCCCCCCCCCCCcccccccHHHHHHHHHHHHHHcCC----CcE
Confidence 3678999999877765 3445555555556999999999999998754222 2235566677666665543 379
Q ss_pred EEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 189 YAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 189 ~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
+++||||||.+++.++..+|+. +++++++++..
T Consensus 99 ~liG~S~Gg~ia~~~a~~~p~~--v~~lvl~~~~~ 131 (288)
T TIGR01250 99 YLLGHSWGGMLAQEYALKYGQH--LKGLIISSMLD 131 (288)
T ss_pred EEEEeehHHHHHHHHHHhCccc--cceeeEecccc
Confidence 9999999999999999999988 99988777643
No 21
>PLN02965 Probable pheophorbidase
Probab=99.65 E-value=8.2e-16 Score=131.33 Aligned_cols=100 Identities=14% Similarity=0.203 Sum_probs=80.8
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcC-CCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEc
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQ-FYSASFLGDMQEVVAHVGSKYPKAHLYAVGWS 194 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~-~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~S 194 (262)
||++||++++... +..++..|.+.||+|+++|+||+|.|+..... .....+++|+.++++.+.. ..+++++|||
T Consensus 6 vvllHG~~~~~~~--w~~~~~~L~~~~~~via~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l~~---~~~~~lvGhS 80 (255)
T PLN02965 6 FVFVHGASHGAWC--WYKLATLLDAAGFKSTCVDLTGAGISLTDSNTVSSSDQYNRPLFALLSDLPP---DHKVILVGHS 80 (255)
T ss_pred EEEECCCCCCcCc--HHHHHHHHhhCCceEEEecCCcCCCCCCCccccCCHHHHHHHHHHHHHhcCC---CCCEEEEecC
Confidence 8999999876653 35677788788999999999999999754332 2336678888888887642 1389999999
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEEcCC
Q 024826 195 LGANILIRYLGHESHSCPLSGAVSLCNP 222 (262)
Q Consensus 195 lGg~ia~~~a~~~~~~~~i~~~v~l~~p 222 (262)
|||.+++.++.++|++ |+++|++++.
T Consensus 81 mGG~ia~~~a~~~p~~--v~~lvl~~~~ 106 (255)
T PLN02965 81 IGGGSVTEALCKFTDK--ISMAIYVAAA 106 (255)
T ss_pred cchHHHHHHHHhCchh--eeEEEEEccc
Confidence 9999999999999998 9999988874
No 22
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.65 E-value=8.2e-15 Score=133.75 Aligned_cols=133 Identities=17% Similarity=0.135 Sum_probs=98.9
Q ss_pred CcceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcC
Q 024826 83 KLKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQ 162 (262)
Q Consensus 83 ~~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~ 162 (262)
..++..+...||..+..++..|+. ..+.|+||++||+.+...+ ++..++..+.++||+|+++|+||+|.|.....
T Consensus 167 ~~e~v~i~~~~g~~l~g~l~~P~~---~~~~P~Vli~gG~~~~~~~-~~~~~~~~La~~Gy~vl~~D~pG~G~s~~~~~- 241 (414)
T PRK05077 167 ELKELEFPIPGGGPITGFLHLPKG---DGPFPTVLVCGGLDSLQTD-YYRLFRDYLAPRGIAMLTIDMPSVGFSSKWKL- 241 (414)
T ss_pred ceEEEEEEcCCCcEEEEEEEECCC---CCCccEEEEeCCcccchhh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCCCc-
Confidence 456777777788788888776652 2357888888887654333 34567788999999999999999999864211
Q ss_pred CCCcCcHHHHHHHHHHHHhhC--CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 163 FYSASFLGDMQEVVAHVGSKY--PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 163 ~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
..+......++++++.... +..+|.++|||+||.+++.++..+|++ |+++|+++++++
T Consensus 242 --~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~r--i~a~V~~~~~~~ 301 (414)
T PRK05077 242 --TQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPR--LKAVACLGPVVH 301 (414)
T ss_pred --cccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcC--ceEEEEECCccc
Confidence 1223333456778877542 345899999999999999999988887 999999999875
No 23
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.64 E-value=1.8e-15 Score=124.14 Aligned_cols=103 Identities=25% Similarity=0.429 Sum_probs=81.4
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCc--CCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEE
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTP--QFYSASFLGDMQEVVAHVGSKYPKAHLYAVGW 193 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~--~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~ 193 (262)
||++||++++.. . +..++..+ ++||+|+++|+||+|.|+.... .....++++|+.++++.+.. .+++++||
T Consensus 1 vv~~hG~~~~~~-~-~~~~~~~l-~~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~lvG~ 73 (228)
T PF12697_consen 1 VVFLHGFGGSSE-S-WDPLAEAL-ARGYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDALGI----KKVILVGH 73 (228)
T ss_dssp EEEE-STTTTGG-G-GHHHHHHH-HTTSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHTTT----SSEEEEEE
T ss_pred eEEECCCCCCHH-H-HHHHHHHH-hCCCEEEEEecCCccccccccccCCcchhhhhhhhhhccccccc----cccccccc
Confidence 799999988764 3 36677777 5899999999999999986542 12224556677777666655 48999999
Q ss_pred cHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHH
Q 024826 194 SLGANILIRYLGHESHSCPLSGAVSLCNPFNLVI 227 (262)
Q Consensus 194 SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~ 227 (262)
|+||.+++.++.++|+. |+++|+++++.....
T Consensus 74 S~Gg~~a~~~a~~~p~~--v~~~vl~~~~~~~~~ 105 (228)
T PF12697_consen 74 SMGGMIALRLAARYPDR--VKGLVLLSPPPPLPD 105 (228)
T ss_dssp THHHHHHHHHHHHSGGG--EEEEEEESESSSHHH
T ss_pred ccccccccccccccccc--cccceeecccccccc
Confidence 99999999999999998 999999999887544
No 24
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.63 E-value=1e-15 Score=124.45 Aligned_cols=107 Identities=21% Similarity=0.323 Sum_probs=91.0
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEE
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVG 192 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG 192 (262)
.-.|+++||++|+..+ ++.+.+++.++||.|.++++||||..+-..-.....+|..|+.+..+++.+. +...|+++|
T Consensus 15 ~~AVLllHGFTGt~~D--vr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~~L~~~-gy~eI~v~G 91 (243)
T COG1647 15 NRAVLLLHGFTGTPRD--VRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDWWEDVEDGYRDLKEA-GYDEIAVVG 91 (243)
T ss_pred CEEEEEEeccCCCcHH--HHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHHHHHHHHHHHHHHHc-CCCeEEEEe
Confidence 4669999999999876 8999999999999999999999997753223334478999999999999954 334799999
Q ss_pred EcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChH
Q 024826 193 WSLGANILIRYLGHESHSCPLSGAVSLCNPFNLV 226 (262)
Q Consensus 193 ~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~ 226 (262)
.||||.+++.++..+| ++++|.+|+|++..
T Consensus 92 lSmGGv~alkla~~~p----~K~iv~m~a~~~~k 121 (243)
T COG1647 92 LSMGGVFALKLAYHYP----PKKIVPMCAPVNVK 121 (243)
T ss_pred ecchhHHHHHHHhhCC----ccceeeecCCcccc
Confidence 9999999999999887 57999999999843
No 25
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.61 E-value=3e-15 Score=126.04 Aligned_cols=103 Identities=24% Similarity=0.302 Sum_probs=79.8
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCC-CCcCcHHHHHHHHHHHHhhCCCCcEEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQF-YSASFLGDMQEVVAHVGSKYPKAHLYA 190 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~-~~~~~~~Dl~~~l~~l~~~~~~~~i~l 190 (262)
++|+||++||+++++. . +...+..+ ..+|+|+++|+||+|.|+...+.. ...++++|+.++++.+.. .++++
T Consensus 12 ~~~~iv~lhG~~~~~~-~-~~~~~~~l-~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l 84 (257)
T TIGR03611 12 DAPVVVLSSGLGGSGS-Y-WAPQLDVL-TQRFHVVTYDHRGTGRSPGELPPGYSIAHMADDVLQLLDALNI----ERFHF 84 (257)
T ss_pred CCCEEEEEcCCCcchh-H-HHHHHHHH-HhccEEEEEcCCCCCCCCCCCcccCCHHHHHHHHHHHHHHhCC----CcEEE
Confidence 5789999999987654 3 34555555 468999999999999997643332 335666777777776543 38999
Q ss_pred EEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 191 VGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 191 vG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
+||||||.+++.+++.+++. ++++|++++..
T Consensus 85 ~G~S~Gg~~a~~~a~~~~~~--v~~~i~~~~~~ 115 (257)
T TIGR03611 85 VGHALGGLIGLQLALRYPER--LLSLVLINAWS 115 (257)
T ss_pred EEechhHHHHHHHHHHChHH--hHHheeecCCC
Confidence 99999999999999999987 99988888643
No 26
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.61 E-value=4e-15 Score=126.30 Aligned_cols=101 Identities=14% Similarity=0.246 Sum_probs=81.4
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEE
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYA 190 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~l 190 (262)
.++|+||++||+.++.. .| ..++..+. .+|+|+++|+||+|.|... ......++++|+.++++.+.. .++++
T Consensus 14 ~~~~~iv~lhG~~~~~~-~~-~~~~~~l~-~~~~vi~~D~~G~G~s~~~-~~~~~~~~~~d~~~~l~~l~~----~~~~l 85 (255)
T PRK10673 14 HNNSPIVLVHGLFGSLD-NL-GVLARDLV-NDHDIIQVDMRNHGLSPRD-PVMNYPAMAQDLLDTLDALQI----EKATF 85 (255)
T ss_pred CCCCCEEEECCCCCchh-HH-HHHHHHHh-hCCeEEEECCCCCCCCCCC-CCCCHHHHHHHHHHHHHHcCC----CceEE
Confidence 46789999999987764 33 55666664 5899999999999999753 233446778888888887643 37999
Q ss_pred EEEcHHHHHHHHHHhhcCCCCCCceEEEEcC
Q 024826 191 VGWSLGANILIRYLGHESHSCPLSGAVSLCN 221 (262)
Q Consensus 191 vG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~ 221 (262)
+||||||.+++.++.++|++ |+++|++++
T Consensus 86 vGhS~Gg~va~~~a~~~~~~--v~~lvli~~ 114 (255)
T PRK10673 86 IGHSMGGKAVMALTALAPDR--IDKLVAIDI 114 (255)
T ss_pred EEECHHHHHHHHHHHhCHhh--cceEEEEec
Confidence 99999999999999999998 999998864
No 27
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.61 E-value=7.1e-15 Score=125.90 Aligned_cols=104 Identities=22% Similarity=0.302 Sum_probs=80.4
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCc-CCCCcCcHHHHHHHHHHHHhhCCCCcEEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTP-QFYSASFLGDMQEVVAHVGSKYPKAHLYA 190 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~-~~~~~~~~~Dl~~~l~~l~~~~~~~~i~l 190 (262)
+.|+||++||++++.. .| ..+...+. ++|+|+++|+||+|.|+.... ......+++|+.++++.+. ..++++
T Consensus 27 ~~~~vv~~hG~~~~~~-~~-~~~~~~l~-~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l~~~i~~~~----~~~~~l 99 (278)
T TIGR03056 27 AGPLLLLLHGTGASTH-SW-RDLMPPLA-RSFRVVAPDLPGHGFTRAPFRFRFTLPSMAEDLSALCAAEG----LSPDGV 99 (278)
T ss_pred CCCeEEEEcCCCCCHH-HH-HHHHHHHh-hCcEEEeecCCCCCCCCCccccCCCHHHHHHHHHHHHHHcC----CCCceE
Confidence 4688999999977654 33 55666664 579999999999999976544 2333666777777776543 347999
Q ss_pred EEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 191 VGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 191 vG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
+||||||.+++.++..+|++ ++++|++++.++
T Consensus 100 vG~S~Gg~~a~~~a~~~p~~--v~~~v~~~~~~~ 131 (278)
T TIGR03056 100 IGHSAGAAIALRLALDGPVT--PRMVVGINAALM 131 (278)
T ss_pred EEECccHHHHHHHHHhCCcc--cceEEEEcCccc
Confidence 99999999999999999987 888888887654
No 28
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.61 E-value=1.9e-14 Score=124.62 Aligned_cols=133 Identities=14% Similarity=0.170 Sum_probs=94.0
Q ss_pred CCCCcceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCC
Q 024826 80 PDVKLKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVT 159 (262)
Q Consensus 80 ~~~~~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~ 159 (262)
-.+.+.-+.+...++..+-..-...+ ..++.++|++||++++.. .|.+.+ +.+++ .++|+++|++|+|.|+.+
T Consensus 61 ~~v~~~~~~v~i~~~~~iw~~~~~~~----~~~~~plVliHGyGAg~g-~f~~Nf-~~La~-~~~vyaiDllG~G~SSRP 133 (365)
T KOG4409|consen 61 VPVPYSKKYVRIPNGIEIWTITVSNE----SANKTPLVLIHGYGAGLG-LFFRNF-DDLAK-IRNVYAIDLLGFGRSSRP 133 (365)
T ss_pred cCCCcceeeeecCCCceeEEEeeccc----ccCCCcEEEEeccchhHH-HHHHhh-hhhhh-cCceEEecccCCCCCCCC
Confidence 34667777777775544322211111 246788999999987765 444444 45554 999999999999999875
Q ss_pred CcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcC
Q 024826 160 TPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCN 221 (262)
Q Consensus 160 ~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~ 221 (262)
.-............+-++..++..+-.+++++|||+||.++..||.+||++ |+.+|+++|
T Consensus 134 ~F~~d~~~~e~~fvesiE~WR~~~~L~KmilvGHSfGGYLaa~YAlKyPer--V~kLiLvsP 193 (365)
T KOG4409|consen 134 KFSIDPTTAEKEFVESIEQWRKKMGLEKMILVGHSFGGYLAAKYALKYPER--VEKLILVSP 193 (365)
T ss_pred CCCCCcccchHHHHHHHHHHHHHcCCcceeEeeccchHHHHHHHHHhChHh--hceEEEecc
Confidence 433322333334555555556666666999999999999999999999999 999887776
No 29
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.60 E-value=1.3e-14 Score=120.82 Aligned_cols=106 Identities=18% Similarity=0.341 Sum_probs=79.6
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEE
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVG 192 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG 192 (262)
+|+||++||++++.. .| ..++..+. .||+|+++|+||+|.|+.+.. ....++.+.+.++++.+.+..+.++++++|
T Consensus 1 ~~~vv~~hG~~~~~~-~~-~~~~~~L~-~~~~v~~~d~~g~G~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 76 (251)
T TIGR03695 1 KPVLVFLHGFLGSGA-DW-QALIELLG-PHFRCLAIDLPGHGSSQSPDE-IERYDFEEAAQDILATLLDQLGIEPFFLVG 76 (251)
T ss_pred CCEEEEEcCCCCchh-hH-HHHHHHhc-ccCeEEEEcCCCCCCCCCCCc-cChhhHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 378999999987765 33 67777776 899999999999999975421 112233333333355555555667999999
Q ss_pred EcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 193 WSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 193 ~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
||+||.+++.++..+|+. +++++++++...
T Consensus 77 ~S~Gg~ia~~~a~~~~~~--v~~lil~~~~~~ 106 (251)
T TIGR03695 77 YSMGGRIALYYALQYPER--VQGLILESGSPG 106 (251)
T ss_pred eccHHHHHHHHHHhCchh--eeeeEEecCCCC
Confidence 999999999999999987 999998887544
No 30
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.60 E-value=6e-15 Score=124.38 Aligned_cols=101 Identities=18% Similarity=0.240 Sum_probs=76.4
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEE
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVG 192 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG 192 (262)
+|+||++||+++++. .| ..+...+ .+|+|+++|+||+|.|+..... ....+++|+.++++.+ +..+++++|
T Consensus 2 ~p~vvllHG~~~~~~-~w-~~~~~~l--~~~~vi~~D~~G~G~S~~~~~~-~~~~~~~~l~~~l~~~----~~~~~~lvG 72 (242)
T PRK11126 2 LPWLVFLHGLLGSGQ-DW-QPVGEAL--PDYPRLYIDLPGHGGSAAISVD-GFADVSRLLSQTLQSY----NILPYWLVG 72 (242)
T ss_pred CCEEEEECCCCCChH-HH-HHHHHHc--CCCCEEEecCCCCCCCCCcccc-CHHHHHHHHHHHHHHc----CCCCeEEEE
Confidence 578999999987765 44 5666665 3799999999999999754322 2345566666666654 344899999
Q ss_pred EcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 193 WSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 193 ~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
|||||.+++.++.+++++ .++++++++++.
T Consensus 73 ~S~Gg~va~~~a~~~~~~-~v~~lvl~~~~~ 102 (242)
T PRK11126 73 YSLGGRIAMYYACQGLAG-GLCGLIVEGGNP 102 (242)
T ss_pred ECHHHHHHHHHHHhCCcc-cccEEEEeCCCC
Confidence 999999999999998642 289988887654
No 31
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.60 E-value=1.6e-14 Score=133.26 Aligned_cols=106 Identities=16% Similarity=0.311 Sum_probs=77.7
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHH---hCCceEEEEcCCCCCCCCCCCcCCCC-cCcHHHHH-HHHHHHHhhCCCC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRAR---SKGWRVVVFNSRGCGDSPVTTPQFYS-ASFLGDMQ-EVVAHVGSKYPKA 186 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~---~~G~~vv~~d~rG~G~s~~~~~~~~~-~~~~~Dl~-~~l~~l~~~~~~~ 186 (262)
.+|+||++||++++.. .|...+...+. +.+|+|+++|+||+|.|+.+....+. .++++|+. ++++. .+..
T Consensus 200 ~k~~VVLlHG~~~s~~-~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p~~~~ytl~~~a~~l~~~ll~~----lg~~ 274 (481)
T PLN03087 200 AKEDVLFIHGFISSSA-FWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKPADSLYTLREHLEMIERSVLER----YKVK 274 (481)
T ss_pred CCCeEEEECCCCccHH-HHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCCCCCcCCHHHHHHHHHHHHHHH----cCCC
Confidence 4678999999987654 33222333443 47999999999999999765333222 44455553 44444 3445
Q ss_pred cEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 187 HLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 187 ~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
+++++||||||.+++.++..+|++ |+++|+++++..
T Consensus 275 k~~LVGhSmGG~iAl~~A~~~Pe~--V~~LVLi~~~~~ 310 (481)
T PLN03087 275 SFHIVAHSLGCILALALAVKHPGA--VKSLTLLAPPYY 310 (481)
T ss_pred CEEEEEECHHHHHHHHHHHhChHh--ccEEEEECCCcc
Confidence 899999999999999999999998 999999998653
No 32
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.60 E-value=2.2e-15 Score=125.75 Aligned_cols=103 Identities=19% Similarity=0.299 Sum_probs=79.6
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAV 191 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lv 191 (262)
++|+||++||++++.. .| ..++..+ +.||+|+++|+||+|.|+.........++++|+.++++.+.. .+++++
T Consensus 12 ~~~~li~~hg~~~~~~-~~-~~~~~~l-~~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~i~~~~~----~~v~li 84 (251)
T TIGR02427 12 GAPVLVFINSLGTDLR-MW-DPVLPAL-TPDFRVLRYDKRGHGLSDAPEGPYSIEDLADDVLALLDHLGI----ERAVFC 84 (251)
T ss_pred CCCeEEEEcCcccchh-hH-HHHHHHh-hcccEEEEecCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCC----CceEEE
Confidence 5789999999866544 33 5556555 579999999999999997544333345667777777766543 389999
Q ss_pred EEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 192 GWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 192 G~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
|||+||.+++.++.++|+. ++++|+++++.
T Consensus 85 G~S~Gg~~a~~~a~~~p~~--v~~li~~~~~~ 114 (251)
T TIGR02427 85 GLSLGGLIAQGLAARRPDR--VRALVLSNTAA 114 (251)
T ss_pred EeCchHHHHHHHHHHCHHH--hHHHhhccCcc
Confidence 9999999999999999888 99988887653
No 33
>PLN02872 triacylglycerol lipase
Probab=99.59 E-value=2.5e-15 Score=135.92 Aligned_cols=157 Identities=22% Similarity=0.234 Sum_probs=111.2
Q ss_pred CchhHHHHHhhhhcCCCCCCcceEEEEcCCCCeEEEEeecCCCC-CCCCCCcEEEEECCCCCCCCcHH----HHHHHHHH
Q 024826 64 WNCHVETIFAAFFRSLPDVKLKRECIRTKDDGSVALDWISGDHQ-LLPPDSPVLILMPGLTGGSEDSY----VRHMLLRA 138 (262)
Q Consensus 64 ~~~~~qt~~~~~~~~~~~~~~~r~~i~~~dg~~i~l~~~~~~~~-~~~~~~p~vv~lHG~~g~~~~~y----~~~~~~~l 138 (262)
....+||+...+.++. ....++..++++||..+.+++...... .....+|+|+++||+.+++..+. .+.+...+
T Consensus 25 ~~~~~~t~~~~~i~~~-gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~L 103 (395)
T PLN02872 25 RRSPVESLCAQLIHPA-GYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFIL 103 (395)
T ss_pred cCCCchhhHHHHHHHc-CCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHH
Confidence 4456788887766554 566789999999999999999764321 11234788999999977665321 13455678
Q ss_pred HhCCceEEEEcCCCCCCCCC----C--CcC---CCCcCcH-HHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcC
Q 024826 139 RSKGWRVVVFNSRGCGDSPV----T--TPQ---FYSASFL-GDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHES 208 (262)
Q Consensus 139 ~~~G~~vv~~d~rG~G~s~~----~--~~~---~~~~~~~-~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~ 208 (262)
+++||+|+++|.||++.|.. . ... ....+++ .|+.++++++.+..+ .+++++|||+||.+++.++ .+|
T Consensus 104 a~~GydV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~~-~~v~~VGhS~Gg~~~~~~~-~~p 181 (395)
T PLN02872 104 ADHGFDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSITN-SKIFIVGHSQGTIMSLAAL-TQP 181 (395)
T ss_pred HhCCCCcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhccC-CceEEEEECHHHHHHHHHh-hCh
Confidence 89999999999999876532 1 111 1123344 799999999976533 5899999999999998655 456
Q ss_pred CC-CCCceEEEEcCCc
Q 024826 209 HS-CPLSGAVSLCNPF 223 (262)
Q Consensus 209 ~~-~~i~~~v~l~~p~ 223 (262)
+. ..|+++++++|..
T Consensus 182 ~~~~~v~~~~~l~P~~ 197 (395)
T PLN02872 182 NVVEMVEAAALLCPIS 197 (395)
T ss_pred HHHHHHHHHHHhcchh
Confidence 52 2477778777754
No 34
>PLN02578 hydrolase
Probab=99.59 E-value=1.2e-14 Score=130.17 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=80.2
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEE
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVG 192 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG 192 (262)
+|+||++||++++.. .| ......+. .+|+|+++|+||+|.|+.....+....+.+|+.++++.+..+ +++++|
T Consensus 86 g~~vvliHG~~~~~~-~w-~~~~~~l~-~~~~v~~~D~~G~G~S~~~~~~~~~~~~a~~l~~~i~~~~~~----~~~lvG 158 (354)
T PLN02578 86 GLPIVLIHGFGASAF-HW-RYNIPELA-KKYKVYALDLLGFGWSDKALIEYDAMVWRDQVADFVKEVVKE----PAVLVG 158 (354)
T ss_pred CCeEEEECCCCCCHH-HH-HHHHHHHh-cCCEEEEECCCCCCCCCCcccccCHHHHHHHHHHHHHHhccC----CeEEEE
Confidence 467899999977643 33 45555664 579999999999999986544444466677888888777543 899999
Q ss_pred EcHHHHHHHHHHhhcCCCCCCceEEEEcCC
Q 024826 193 WSLGANILIRYLGHESHSCPLSGAVSLCNP 222 (262)
Q Consensus 193 ~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p 222 (262)
||+||.+++.++.++|+. ++++|+++++
T Consensus 159 ~S~Gg~ia~~~A~~~p~~--v~~lvLv~~~ 186 (354)
T PLN02578 159 NSLGGFTALSTAVGYPEL--VAGVALLNSA 186 (354)
T ss_pred ECHHHHHHHHHHHhChHh--cceEEEECCC
Confidence 999999999999999998 9999988763
No 35
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.59 E-value=1.6e-14 Score=129.80 Aligned_cols=102 Identities=16% Similarity=0.206 Sum_probs=79.3
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCc-CCCCcCcHHHHHHHHHHHHhhCCCCcEEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTP-QFYSASFLGDMQEVVAHVGSKYPKAHLYA 190 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~-~~~~~~~~~Dl~~~l~~l~~~~~~~~i~l 190 (262)
..|+||++||++++.. .| ..++..+. .+|+|+++|+||+|.|+.+.. .....++++|+.++++.+.. .++++
T Consensus 87 ~gp~lvllHG~~~~~~-~w-~~~~~~L~-~~~~via~Dl~G~G~S~~~~~~~~~~~~~a~~l~~~l~~l~~----~~~~l 159 (360)
T PLN02679 87 SGPPVLLVHGFGASIP-HW-RRNIGVLA-KNYTVYAIDLLGFGASDKPPGFSYTMETWAELILDFLEEVVQ----KPTVL 159 (360)
T ss_pred CCCeEEEECCCCCCHH-HH-HHHHHHHh-cCCEEEEECCCCCCCCCCCCCccccHHHHHHHHHHHHHHhcC----CCeEE
Confidence 3578999999977654 33 56666665 489999999999999976433 22336677788888876544 38999
Q ss_pred EEEcHHHHHHHHHHhh-cCCCCCCceEEEEcCC
Q 024826 191 VGWSLGANILIRYLGH-ESHSCPLSGAVSLCNP 222 (262)
Q Consensus 191 vG~SlGg~ia~~~a~~-~~~~~~i~~~v~l~~p 222 (262)
+||||||.+++.++.. +|++ |+++|+++++
T Consensus 160 vGhS~Gg~ia~~~a~~~~P~r--V~~LVLi~~~ 190 (360)
T PLN02679 160 IGNSVGSLACVIAASESTRDL--VRGLVLLNCA 190 (360)
T ss_pred EEECHHHHHHHHHHHhcChhh--cCEEEEECCc
Confidence 9999999999988874 6888 9999999875
No 36
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.58 E-value=2.6e-14 Score=123.61 Aligned_cols=104 Identities=14% Similarity=0.261 Sum_probs=79.0
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcC-CCCcCcHHHHHHHHHHHHhhCCCCcEEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQ-FYSASFLGDMQEVVAHVGSKYPKAHLYA 190 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~-~~~~~~~~Dl~~~l~~l~~~~~~~~i~l 190 (262)
++|+||++||++++.. .| ..++..|.++||+|+++|+||+|.|...... ....++++|+.++++.+. ...++++
T Consensus 17 ~~p~vvliHG~~~~~~-~w-~~~~~~L~~~g~~vi~~dl~g~G~s~~~~~~~~~~~~~~~~l~~~i~~l~---~~~~v~l 91 (273)
T PLN02211 17 QPPHFVLIHGISGGSW-CW-YKIRCLMENSGYKVTCIDLKSAGIDQSDADSVTTFDEYNKPLIDFLSSLP---ENEKVIL 91 (273)
T ss_pred CCCeEEEECCCCCCcC-cH-HHHHHHHHhCCCEEEEecccCCCCCCCCcccCCCHHHHHHHHHHHHHhcC---CCCCEEE
Confidence 5789999999987765 33 6777788888999999999999987533222 222444555555555432 2348999
Q ss_pred EEEcHHHHHHHHHHhhcCCCCCCceEEEEcCC
Q 024826 191 VGWSLGANILIRYLGHESHSCPLSGAVSLCNP 222 (262)
Q Consensus 191 vG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p 222 (262)
+||||||.++..++..+|++ |+++|.+++.
T Consensus 92 vGhS~GG~v~~~~a~~~p~~--v~~lv~~~~~ 121 (273)
T PLN02211 92 VGHSAGGLSVTQAIHRFPKK--ICLAVYVAAT 121 (273)
T ss_pred EEECchHHHHHHHHHhChhh--eeEEEEeccc
Confidence 99999999999999999988 9999998763
No 37
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.58 E-value=1.2e-13 Score=119.57 Aligned_cols=124 Identities=15% Similarity=0.132 Sum_probs=89.1
Q ss_pred CCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCC--cHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcH
Q 024826 92 KDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSE--DSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFL 169 (262)
Q Consensus 92 ~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~--~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~ 169 (262)
.+|..+...+..|.+ . +++.||++||..+... ......++..+.++||+|+++|+||+|.|+... .....+.
T Consensus 9 ~~~~~l~g~~~~p~~---~-~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~~--~~~~~~~ 82 (274)
T TIGR03100 9 CEGETLVGVLHIPGA---S-HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGEN--LGFEGID 82 (274)
T ss_pred cCCcEEEEEEEcCCC---C-CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCC--CCHHHHH
Confidence 455556655555542 1 3455677776543221 122356788899999999999999999987432 2335678
Q ss_pred HHHHHHHHHHHhhCC-CCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 170 GDMQEVVAHVGSKYP-KAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 170 ~Dl~~~l~~l~~~~~-~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
+|+.++++++++..+ ..+++++|||+||.+++.++... .. |+++|++++++.
T Consensus 83 ~d~~~~~~~l~~~~~g~~~i~l~G~S~Gg~~a~~~a~~~-~~--v~~lil~~p~~~ 135 (274)
T TIGR03100 83 ADIAAAIDAFREAAPHLRRIVAWGLCDAASAALLYAPAD-LR--VAGLVLLNPWVR 135 (274)
T ss_pred HHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHhhhC-CC--ccEEEEECCccC
Confidence 899999999987653 35799999999999999997653 44 999999998754
No 38
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.57 E-value=2.5e-14 Score=135.22 Aligned_cols=134 Identities=14% Similarity=0.105 Sum_probs=104.8
Q ss_pred EEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCc--HHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCc
Q 024826 89 IRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSED--SYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSA 166 (262)
Q Consensus 89 i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~--~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~ 166 (262)
|++.||..+..+++.|++ ..+.|+||++||++..... .+.......++++||.|+++|+||+|.|++...... .
T Consensus 1 i~~~DG~~L~~~~~~P~~---~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~~~-~ 76 (550)
T TIGR00976 1 VPMRDGTRLAIDVYRPAG---GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDLLG-S 76 (550)
T ss_pred CcCCCCCEEEEEEEecCC---CCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEecC-c
Confidence 356799999988887753 2367999999999765420 111223457888999999999999999986543332 5
Q ss_pred CcHHHHHHHHHHHHhh-CCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHHH
Q 024826 167 SFLGDMQEVVAHVGSK-YPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVIA 228 (262)
Q Consensus 167 ~~~~Dl~~~l~~l~~~-~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~ 228 (262)
...+|+.++++++.++ ..+.+|.++|+|+||.+++.++..+++. ++++|..++..|+...
T Consensus 77 ~~~~D~~~~i~~l~~q~~~~~~v~~~G~S~GG~~a~~~a~~~~~~--l~aiv~~~~~~d~~~~ 137 (550)
T TIGR00976 77 DEAADGYDLVDWIAKQPWCDGNVGMLGVSYLAVTQLLAAVLQPPA--LRAIAPQEGVWDLYRD 137 (550)
T ss_pred ccchHHHHHHHHHHhCCCCCCcEEEEEeChHHHHHHHHhccCCCc--eeEEeecCcccchhHh
Confidence 6789999999999875 3446899999999999999999998887 9999999998886553
No 39
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.57 E-value=3.3e-14 Score=123.69 Aligned_cols=122 Identities=19% Similarity=0.232 Sum_probs=83.2
Q ss_pred cceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCC
Q 024826 84 LKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQF 163 (262)
Q Consensus 84 ~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~ 163 (262)
.+.+.+++ +|..+. |.... .+|+||++||+..++. .| ..++..+ ..+|+|+++|+||+|.|+.+....
T Consensus 14 ~~~~~~~~-~~~~i~--y~~~G------~~~~iv~lHG~~~~~~-~~-~~~~~~l-~~~~~vi~~D~~G~G~S~~~~~~~ 81 (286)
T PRK03204 14 FESRWFDS-SRGRIH--YIDEG------TGPPILLCHGNPTWSF-LY-RDIIVAL-RDRFRCVAPDYLGFGLSERPSGFG 81 (286)
T ss_pred ccceEEEc-CCcEEE--EEECC------CCCEEEEECCCCccHH-HH-HHHHHHH-hCCcEEEEECCCCCCCCCCCCccc
Confidence 44556665 454443 33322 3578999999865432 23 4555555 457999999999999997543221
Q ss_pred C-CcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 164 Y-SASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 164 ~-~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
+ ..++.+++.++++. .+..+++++||||||.++..++..+|++ |+++|+++++.
T Consensus 82 ~~~~~~~~~~~~~~~~----~~~~~~~lvG~S~Gg~va~~~a~~~p~~--v~~lvl~~~~~ 136 (286)
T PRK03204 82 YQIDEHARVIGEFVDH----LGLDRYLSMGQDWGGPISMAVAVERADR--VRGVVLGNTWF 136 (286)
T ss_pred cCHHHHHHHHHHHHHH----hCCCCEEEEEECccHHHHHHHHHhChhh--eeEEEEECccc
Confidence 2 23444455544444 3445899999999999999999999998 99999877643
No 40
>PRK06489 hypothetical protein; Provisional
Probab=99.57 E-value=1.6e-14 Score=129.76 Aligned_cols=105 Identities=10% Similarity=0.144 Sum_probs=72.2
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHH-------HhCCceEEEEcCCCCCCCCCCCcC-------CCCcCcHHHHHHHHHH
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRA-------RSKGWRVVVFNSRGCGDSPVTTPQ-------FYSASFLGDMQEVVAH 178 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l-------~~~G~~vv~~d~rG~G~s~~~~~~-------~~~~~~~~Dl~~~l~~ 178 (262)
.|+||++||++++...++...+...+ ...+|+|+++|+||||.|+.+... +...++++|+.+ .
T Consensus 69 gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~---~ 145 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKPSDGLRAAFPRYDYDDMVEAQYR---L 145 (360)
T ss_pred CCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCCcCCCCCCCcccHHHHHHHHHH---H
Confidence 68899999998866532211333333 257899999999999999754321 111333334433 2
Q ss_pred HHhhCCCCcEE-EEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCC
Q 024826 179 VGSKYPKAHLY-AVGWSLGANILIRYLGHESHSCPLSGAVSLCNP 222 (262)
Q Consensus 179 l~~~~~~~~i~-lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p 222 (262)
+....+-.+++ ++||||||.+++.++.++|++ |+++|++++.
T Consensus 146 l~~~lgi~~~~~lvG~SmGG~vAl~~A~~~P~~--V~~LVLi~s~ 188 (360)
T PRK06489 146 VTEGLGVKHLRLILGTSMGGMHAWMWGEKYPDF--MDALMPMASQ 188 (360)
T ss_pred HHHhcCCCceeEEEEECHHHHHHHHHHHhCchh--hheeeeeccC
Confidence 32333334675 899999999999999999998 9999988763
No 41
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.56 E-value=6.5e-14 Score=122.91 Aligned_cols=124 Identities=17% Similarity=0.293 Sum_probs=84.5
Q ss_pred ceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcC--
Q 024826 85 KRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQ-- 162 (262)
Q Consensus 85 ~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~-- 162 (262)
...++...||..+.+.- .. .++.++||++||+.++.... .....+...+|+|+++|+||+|.|+.....
T Consensus 5 ~~~~~~~~~~~~l~y~~--~g----~~~~~~lvllHG~~~~~~~~---~~~~~~~~~~~~vi~~D~~G~G~S~~~~~~~~ 75 (306)
T TIGR01249 5 VSGYLNVSDNHQLYYEQ--SG----NPDGKPVVFLHGGPGSGTDP---GCRRFFDPETYRIVLFDQRGCGKSTPHACLEE 75 (306)
T ss_pred cCCeEEcCCCcEEEEEE--Cc----CCCCCEEEEECCCCCCCCCH---HHHhccCccCCEEEEECCCCCCCCCCCCCccc
Confidence 34567777876665432 21 11356789999987765432 223334457899999999999999743221
Q ss_pred CCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 163 FYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 163 ~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
....+.++|+.++++++ +..+++++||||||.+++.++.++|++ ++++|++++..
T Consensus 76 ~~~~~~~~dl~~l~~~l----~~~~~~lvG~S~GG~ia~~~a~~~p~~--v~~lvl~~~~~ 130 (306)
T TIGR01249 76 NTTWDLVADIEKLREKL----GIKNWLVFGGSWGSTLALAYAQTHPEV--VTGLVLRGIFL 130 (306)
T ss_pred CCHHHHHHHHHHHHHHc----CCCCEEEEEECHHHHHHHHHHHHChHh--hhhheeecccc
Confidence 11133445555555444 444899999999999999999999998 99988887643
No 42
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.55 E-value=4.9e-14 Score=121.47 Aligned_cols=116 Identities=28% Similarity=0.508 Sum_probs=96.9
Q ss_pred EEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCc-CCC-CcCcHHHHHH
Q 024826 97 VALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTP-QFY-SASFLGDMQE 174 (262)
Q Consensus 97 i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~-~~~-~~~~~~Dl~~ 174 (262)
|.+.+.... +.+.|+|+++||+.....+ ++.....++.+||+|+++|+||+|.|+.+.. ..| ....+.|+.+
T Consensus 32 I~~h~~e~g----~~~gP~illlHGfPe~wys--wr~q~~~la~~~~rviA~DlrGyG~Sd~P~~~~~Yt~~~l~~di~~ 105 (322)
T KOG4178|consen 32 IRLHYVEGG----PGDGPIVLLLHGFPESWYS--WRHQIPGLASRGYRVIAPDLRGYGFSDAPPHISEYTIDELVGDIVA 105 (322)
T ss_pred EEEEEEeec----CCCCCEEEEEccCCccchh--hhhhhhhhhhcceEEEecCCCCCCCCCCCCCcceeeHHHHHHHHHH
Confidence 766666542 3478999999999876554 3567788999999999999999999987655 333 3677889999
Q ss_pred HHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 175 VVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 175 ~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
+++.+..+ +++++||++||.++..++..+|++ |++.|+++.++.
T Consensus 106 lld~Lg~~----k~~lvgHDwGaivaw~la~~~Per--v~~lv~~nv~~~ 149 (322)
T KOG4178|consen 106 LLDHLGLK----KAFLVGHDWGAIVAWRLALFYPER--VDGLVTLNVPFP 149 (322)
T ss_pred HHHHhccc----eeEEEeccchhHHHHHHHHhChhh--cceEEEecCCCC
Confidence 99998854 999999999999999999999999 999999998876
No 43
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.55 E-value=5.9e-14 Score=126.69 Aligned_cols=104 Identities=17% Similarity=0.353 Sum_probs=84.7
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcC----CCCcCcHHHHHHHHHHHHhhCCCCc
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQ----FYSASFLGDMQEVVAHVGSKYPKAH 187 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~----~~~~~~~~Dl~~~l~~l~~~~~~~~ 187 (262)
++|+||++||+.++.. .| +.++..+. .+|+|+++|+||+|.|+.+... .....+++|+.++++.+... +
T Consensus 126 ~~~~ivllHG~~~~~~-~w-~~~~~~L~-~~~~Via~DlpG~G~S~~p~~~~~~~ys~~~~a~~l~~~i~~l~~~----~ 198 (383)
T PLN03084 126 NNPPVLLIHGFPSQAY-SY-RKVLPVLS-KNYHAIAFDWLGFGFSDKPQPGYGFNYTLDEYVSSLESLIDELKSD----K 198 (383)
T ss_pred CCCeEEEECCCCCCHH-HH-HHHHHHHh-cCCEEEEECCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHhCCC----C
Confidence 4688999999976554 33 56666665 5899999999999999865331 23367788888888887654 8
Q ss_pred EEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 188 LYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 188 i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
++++|||+||.+++.++.++|++ |+++|+++++..
T Consensus 199 ~~LvG~s~GG~ia~~~a~~~P~~--v~~lILi~~~~~ 233 (383)
T PLN03084 199 VSLVVQGYFSPPVVKYASAHPDK--IKKLILLNPPLT 233 (383)
T ss_pred ceEEEECHHHHHHHHHHHhChHh--hcEEEEECCCCc
Confidence 99999999999999999999998 999999998753
No 44
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.55 E-value=1.4e-13 Score=125.34 Aligned_cols=105 Identities=13% Similarity=0.174 Sum_probs=72.3
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCc-HHHHHH-HHHHHHhhCCCCcEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASF-LGDMQE-VVAHVGSKYPKAHLY 189 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~-~~Dl~~-~l~~l~~~~~~~~i~ 189 (262)
++|+||++||++++.. .| ...+..+. .+|+|+++|+||+|.|+........... .+++.+ +.+++. ..+..+++
T Consensus 104 ~~p~vvllHG~~~~~~-~~-~~~~~~L~-~~~~vi~~D~rG~G~S~~~~~~~~~~~~~~~~~~~~i~~~~~-~l~~~~~~ 179 (402)
T PLN02894 104 DAPTLVMVHGYGASQG-FF-FRNFDALA-SRFRVIAIDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRK-AKNLSNFI 179 (402)
T ss_pred CCCEEEEECCCCcchh-HH-HHHHHHHH-hCCEEEEECCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHH-HcCCCCeE
Confidence 5689999999976543 34 34455665 4699999999999999754222111111 112222 223332 22445899
Q ss_pred EEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCC
Q 024826 190 AVGWSLGANILIRYLGHESHSCPLSGAVSLCNP 222 (262)
Q Consensus 190 lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p 222 (262)
++||||||.+++.++.++|+. ++++|+++++
T Consensus 180 lvGhS~GG~la~~~a~~~p~~--v~~lvl~~p~ 210 (402)
T PLN02894 180 LLGHSFGGYVAAKYALKHPEH--VQHLILVGPA 210 (402)
T ss_pred EEEECHHHHHHHHHHHhCchh--hcEEEEECCc
Confidence 999999999999999999998 9998888763
No 45
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.51 E-value=1.3e-13 Score=117.61 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=70.0
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAV 191 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lv 191 (262)
+.|+||++||+++++. .| ..++..+. ..|+|+++|+||+|.|+... .+ .. +++.+ .+.. ....+++++
T Consensus 12 g~~~ivllHG~~~~~~-~w-~~~~~~L~-~~~~vi~~Dl~G~G~S~~~~--~~--~~-~~~~~---~l~~-~~~~~~~lv 79 (256)
T PRK10349 12 GNVHLVLLHGWGLNAE-VW-RCIDEELS-SHFTLHLVDLPGFGRSRGFG--AL--SL-ADMAE---AVLQ-QAPDKAIWL 79 (256)
T ss_pred CCCeEEEECCCCCChh-HH-HHHHHHHh-cCCEEEEecCCCCCCCCCCC--CC--CH-HHHHH---HHHh-cCCCCeEEE
Confidence 3457999999876654 33 56666775 56999999999999997432 11 22 22222 2222 123489999
Q ss_pred EEcHHHHHHHHHHhhcCCCCCCceEEEEcC
Q 024826 192 GWSLGANILIRYLGHESHSCPLSGAVSLCN 221 (262)
Q Consensus 192 G~SlGg~ia~~~a~~~~~~~~i~~~v~l~~ 221 (262)
||||||.+++.++.++|+. |+++|++++
T Consensus 80 GhS~Gg~ia~~~a~~~p~~--v~~lili~~ 107 (256)
T PRK10349 80 GWSLGGLVASQIALTHPER--VQALVTVAS 107 (256)
T ss_pred EECHHHHHHHHHHHhChHh--hheEEEecC
Confidence 9999999999999999998 999998876
No 46
>PRK10566 esterase; Provisional
Probab=99.51 E-value=3.8e-13 Score=114.18 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=76.4
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCc-------CcHHHHHHHHHHHHhhC-
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSA-------SFLGDMQEVVAHVGSKY- 183 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~-------~~~~Dl~~~l~~l~~~~- 183 (262)
..|+||++||++++.. . ...++..+.++||+|+++|+||+|.+....+..... ...+|+.++++++.++.
T Consensus 26 ~~p~vv~~HG~~~~~~-~-~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 103 (249)
T PRK10566 26 PLPTVFFYHGFTSSKL-V-YSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNMQEFPTLRAAIREEGW 103 (249)
T ss_pred CCCEEEEeCCCCcccc-h-HHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4689999999977654 3 356788899999999999999999753211111111 22467778888887653
Q ss_pred -CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEc
Q 024826 184 -PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLC 220 (262)
Q Consensus 184 -~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~ 220 (262)
+.++|+++|||+||.+++.++..+++ +.+.+++.
T Consensus 104 ~~~~~i~v~G~S~Gg~~al~~~~~~~~---~~~~~~~~ 138 (249)
T PRK10566 104 LLDDRLAVGGASMGGMTALGIMARHPW---VKCVASLM 138 (249)
T ss_pred cCccceeEEeecccHHHHHHHHHhCCC---eeEEEEee
Confidence 34689999999999999999988876 55555544
No 47
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.49 E-value=1.9e-13 Score=122.32 Aligned_cols=123 Identities=11% Similarity=0.117 Sum_probs=92.1
Q ss_pred EEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHH---HHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcH-HHH
Q 024826 97 VALDWISGDHQLLPPDSPVLILMPGLTGGSEDSY---VRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFL-GDM 172 (262)
Q Consensus 97 i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y---~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~-~Dl 172 (262)
+.+..+.+.. ....+++||++||+..+..... .+.++..+.++||+|+++|+||+|.++.. ....++. +|+
T Consensus 48 ~~l~~~~~~~--~~~~~~pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~---~~~~d~~~~~~ 122 (350)
T TIGR01836 48 VVLYRYTPVK--DNTHKTPLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADRY---LTLDDYINGYI 122 (350)
T ss_pred EEEEEecCCC--CcCCCCcEEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHhc---CCHHHHHHHHH
Confidence 5555444432 1123456999999753322100 14688899999999999999999876532 2234554 458
Q ss_pred HHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChH
Q 024826 173 QEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLV 226 (262)
Q Consensus 173 ~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~ 226 (262)
.++++++.+..+..+++++|||+||.+++.|++.++++ |+++|++++|+++.
T Consensus 123 ~~~v~~l~~~~~~~~i~lvGhS~GG~i~~~~~~~~~~~--v~~lv~~~~p~~~~ 174 (350)
T TIGR01836 123 DKCVDYICRTSKLDQISLLGICQGGTFSLCYAALYPDK--IKNLVTMVTPVDFE 174 (350)
T ss_pred HHHHHHHHHHhCCCcccEEEECHHHHHHHHHHHhCchh--eeeEEEeccccccC
Confidence 89999999988888999999999999999999999987 99999999999864
No 48
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.49 E-value=1.9e-13 Score=113.76 Aligned_cols=97 Identities=15% Similarity=0.296 Sum_probs=70.8
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAV 191 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lv 191 (262)
++|+||++||++++.. .| ..+...+. .+|+|+++|+||+|.|+.... . ++.++++.+.... ..+++++
T Consensus 3 g~~~iv~~HG~~~~~~-~~-~~~~~~l~-~~~~vi~~d~~G~G~s~~~~~-~-------~~~~~~~~~~~~~-~~~~~lv 70 (245)
T TIGR01738 3 GNVHLVLIHGWGMNAE-VF-RCLDEELS-AHFTLHLVDLPGHGRSRGFGP-L-------SLADAAEAIAAQA-PDPAIWL 70 (245)
T ss_pred CCceEEEEcCCCCchh-hH-HHHHHhhc-cCeEEEEecCCcCccCCCCCC-c-------CHHHHHHHHHHhC-CCCeEEE
Confidence 4578999999866554 33 56666665 579999999999999864321 1 2222333333222 2489999
Q ss_pred EEcHHHHHHHHHHhhcCCCCCCceEEEEcCC
Q 024826 192 GWSLGANILIRYLGHESHSCPLSGAVSLCNP 222 (262)
Q Consensus 192 G~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p 222 (262)
||||||.+++.++.++|+. ++++|++++.
T Consensus 71 G~S~Gg~~a~~~a~~~p~~--v~~~il~~~~ 99 (245)
T TIGR01738 71 GWSLGGLVALHIAATHPDR--VRALVTVASS 99 (245)
T ss_pred EEcHHHHHHHHHHHHCHHh--hheeeEecCC
Confidence 9999999999999999998 9998888663
No 49
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.48 E-value=2.9e-13 Score=121.35 Aligned_cols=102 Identities=14% Similarity=0.216 Sum_probs=75.4
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAV 191 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lv 191 (262)
+.|+||++||++++... | ..+...+. .+|+|+++|+||+|.|...........+++++.++++ ..+..+++++
T Consensus 130 ~~~~vl~~HG~~~~~~~-~-~~~~~~l~-~~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~lv 202 (371)
T PRK14875 130 DGTPVVLIHGFGGDLNN-W-LFNHAALA-AGRPVIALDLPGHGASSKAVGAGSLDELAAAVLAFLD----ALGIERAHLV 202 (371)
T ss_pred CCCeEEEECCCCCccch-H-HHHHHHHh-cCCEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHH----hcCCccEEEE
Confidence 46889999999877654 3 45555554 4699999999999998643322222334444444443 3444589999
Q ss_pred EEcHHHHHHHHHHhhcCCCCCCceEEEEcCC
Q 024826 192 GWSLGANILIRYLGHESHSCPLSGAVSLCNP 222 (262)
Q Consensus 192 G~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p 222 (262)
|||+||.+++.++..++++ ++++++++++
T Consensus 203 G~S~Gg~~a~~~a~~~~~~--v~~lv~~~~~ 231 (371)
T PRK14875 203 GHSMGGAVALRLAARAPQR--VASLTLIAPA 231 (371)
T ss_pred eechHHHHHHHHHHhCchh--eeEEEEECcC
Confidence 9999999999999999987 9999988875
No 50
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.48 E-value=2.3e-13 Score=110.38 Aligned_cols=136 Identities=16% Similarity=0.207 Sum_probs=108.0
Q ss_pred CCCCCcceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCC
Q 024826 79 LPDVKLKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPV 158 (262)
Q Consensus 79 ~~~~~~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~ 158 (262)
...++|++..+.+.|..++..+|...+. ..|+++++||.+|+..... ...-..+...+.+|+.+++||+|.|++
T Consensus 49 ~~n~pye~i~l~T~D~vtL~a~~~~~E~-----S~pTlLyfh~NAGNmGhr~-~i~~~fy~~l~mnv~ivsYRGYG~S~G 122 (300)
T KOG4391|consen 49 EFNMPYERIELRTRDKVTLDAYLMLSES-----SRPTLLYFHANAGNMGHRL-PIARVFYVNLKMNVLIVSYRGYGKSEG 122 (300)
T ss_pred ccCCCceEEEEEcCcceeEeeeeecccC-----CCceEEEEccCCCcccchh-hHHHHHHHHcCceEEEEEeeccccCCC
Confidence 3456789999999999888888887442 7899999999999876432 222224466799999999999999987
Q ss_pred CCcCCCCcCcHHHHHHHHHHHHhhC--CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcCh
Q 024826 159 TTPQFYSASFLGDMQEVVAHVGSKY--PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNL 225 (262)
Q Consensus 159 ~~~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~ 225 (262)
...+ .+..-|.+++++++..+. ..+++++.|.|+||.++...++++.++ +.++++-..-...
T Consensus 123 spsE---~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~r--i~~~ivENTF~SI 186 (300)
T KOG4391|consen 123 SPSE---EGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDR--ISAIIVENTFLSI 186 (300)
T ss_pred Cccc---cceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhh--eeeeeeechhccc
Confidence 6444 677789999999998763 456999999999999999999999988 8887665554443
No 51
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.47 E-value=6e-13 Score=121.03 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=85.5
Q ss_pred CCCCcEEEEECCCCCCC-CcHHHHHHHHHHHh--CCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhC--C
Q 024826 110 PPDSPVLILMPGLTGGS-EDSYVRHMLLRARS--KGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKY--P 184 (262)
Q Consensus 110 ~~~~p~vv~lHG~~g~~-~~~y~~~~~~~l~~--~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~--~ 184 (262)
...+|++|++||+.++. .+.|+..++..+.. ..|+|+++|++|+|.++.+....+.....+++.++++++.... +
T Consensus 38 n~~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y~~a~~~t~~vg~~la~lI~~L~~~~gl~ 117 (442)
T TIGR03230 38 NHETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHYPTSAAYTKLVGKDVAKFVNWMQEEFNYP 117 (442)
T ss_pred CCCCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCCCccccccHHHHHHHHHHHHHHHHHhhCCC
Confidence 34679999999998654 34566667766643 3699999999999987654333344555678888888886543 4
Q ss_pred CCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCC
Q 024826 185 KAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNP 222 (262)
Q Consensus 185 ~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p 222 (262)
.++++++||||||.++..++...+.+ |.+++.++|.
T Consensus 118 l~~VhLIGHSLGAhIAg~ag~~~p~r--V~rItgLDPA 153 (442)
T TIGR03230 118 WDNVHLLGYSLGAHVAGIAGSLTKHK--VNRITGLDPA 153 (442)
T ss_pred CCcEEEEEECHHHHHHHHHHHhCCcc--eeEEEEEcCC
Confidence 56899999999999999999888887 9999999883
No 52
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.47 E-value=2.3e-13 Score=117.75 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=82.9
Q ss_pred CCCCcEEEEECCCCCCCCcHHHHHHHHHHH-hCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhh--CCCC
Q 024826 110 PPDSPVLILMPGLTGGSEDSYVRHMLLRAR-SKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSK--YPKA 186 (262)
Q Consensus 110 ~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~-~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~--~~~~ 186 (262)
.+.+|++|++||+.++..+.|...+...+. ..+|+|+++|+++++.+.............+++.++++.+.+. .+..
T Consensus 33 ~~~~p~vilIHG~~~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~y~~a~~~~~~v~~~la~~l~~L~~~~g~~~~ 112 (275)
T cd00707 33 NPSRPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGRGANPNYPQAVNNTRVVGAELAKFLDFLVDNTGLSLE 112 (275)
T ss_pred CCCCCcEEEEcCCCCCCCCcHHHHHHHHHHhcCCCEEEEEECccccccChHHHHHhHHHHHHHHHHHHHHHHHhcCCChH
Confidence 346899999999998875555566665554 4689999999998843321111111234456888888888765 3445
Q ss_pred cEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 187 HLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 187 ~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
+++++||||||.++..++...+++ |.+++.++|..
T Consensus 113 ~i~lIGhSlGa~vAg~~a~~~~~~--v~~iv~LDPa~ 147 (275)
T cd00707 113 NVHLIGHSLGAHVAGFAGKRLNGK--LGRITGLDPAG 147 (275)
T ss_pred HEEEEEecHHHHHHHHHHHHhcCc--cceeEEecCCc
Confidence 899999999999999999999887 99999998754
No 53
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.47 E-value=1.3e-13 Score=123.35 Aligned_cols=107 Identities=17% Similarity=0.229 Sum_probs=76.3
Q ss_pred CCcEEEEECCCCCCCCcH---------HHHHHH---HHHHhCCceEEEEcCCC--CCCCCCCC--c----------CCCC
Q 024826 112 DSPVLILMPGLTGGSEDS---------YVRHML---LRARSKGWRVVVFNSRG--CGDSPVTT--P----------QFYS 165 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~---------y~~~~~---~~l~~~G~~vv~~d~rG--~G~s~~~~--~----------~~~~ 165 (262)
.+++||++||++++++.. ++..++ ..+...+|+|+++|+|| +|.|.... + ....
T Consensus 30 ~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~~~~~~~~~~~~~~~~~~~~ 109 (351)
T TIGR01392 30 RSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGPSSINPGGRPYGSDFPLITI 109 (351)
T ss_pred CCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCCCCCCCCCCcCCCCCCCCcH
Confidence 457899999998876431 334443 25557899999999999 44443210 1 1122
Q ss_pred cCcHHHHHHHHHHHHhhCCCCc-EEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 166 ASFLGDMQEVVAHVGSKYPKAH-LYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 166 ~~~~~Dl~~~l~~l~~~~~~~~-i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
.++++|+.++++.+. -.+ ++++||||||.+++.++.++|+. ++++|++++...
T Consensus 110 ~~~~~~~~~~~~~l~----~~~~~~l~G~S~Gg~ia~~~a~~~p~~--v~~lvl~~~~~~ 163 (351)
T TIGR01392 110 RDDVKAQKLLLDHLG----IEQIAAVVGGSMGGMQALEWAIDYPER--VRAIVVLATSAR 163 (351)
T ss_pred HHHHHHHHHHHHHcC----CCCceEEEEECHHHHHHHHHHHHChHh--hheEEEEccCCc
Confidence 455666666666553 347 99999999999999999999998 999999998653
No 54
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.46 E-value=1.6e-12 Score=103.75 Aligned_cols=109 Identities=20% Similarity=0.339 Sum_probs=92.0
Q ss_pred CCCcEEEEECC---CCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCc
Q 024826 111 PDSPVLILMPG---LTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAH 187 (262)
Q Consensus 111 ~~~p~vv~lHG---~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~ 187 (262)
+.+|+.|+||- .+|+.++.-+..+...+.+.||.|+.+|+||.|+|.++.... .+..+|..++++|++.++|+.+
T Consensus 26 ~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~fD~G--iGE~~Da~aaldW~~~~hp~s~ 103 (210)
T COG2945 26 PAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEFDNG--IGELEDAAAALDWLQARHPDSA 103 (210)
T ss_pred CCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcccCC--cchHHHHHHHHHHHHhhCCCch
Confidence 47899999985 335556566667788899999999999999999998754432 6778999999999999999988
Q ss_pred E-EEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 188 L-YAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 188 i-~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
. .+.|+|+|+.+++..|.+.++ +...++++++.+
T Consensus 104 ~~~l~GfSFGa~Ia~~la~r~~e---~~~~is~~p~~~ 138 (210)
T COG2945 104 SCWLAGFSFGAYIAMQLAMRRPE---ILVFISILPPIN 138 (210)
T ss_pred hhhhcccchHHHHHHHHHHhccc---ccceeeccCCCC
Confidence 7 789999999999999998887 677788888877
No 55
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.46 E-value=9.9e-13 Score=110.47 Aligned_cols=157 Identities=22% Similarity=0.345 Sum_probs=100.8
Q ss_pred cchhchhhhccccCCCCCCCCCCCCchhHHHHHhhhhcCCCCCCcceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEE
Q 024826 40 GALHTFLPALKTLSRPYSPFPVIGWNCHVETIFAAFFRSLPDVKLKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILM 119 (262)
Q Consensus 40 ~~~~~~~~~~~~l~~~y~p~p~~~~~~~~qt~~~~~~~~~~~~~~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~l 119 (262)
|+.+.+-+.-+...+.|+|.||- .+|.....+... ..|+ ++..+...+. ....|+++++
T Consensus 22 ~r~~~~~~~~~~~~re~S~~pWs-----------~yFdekedv~i~-----~~~~-t~n~Y~t~~~----~t~gpil~l~ 80 (343)
T KOG2564|consen 22 GRARPLRPPSTGSSREYSPVPWS-----------DYFDEKEDVSID-----GSDL-TFNVYLTLPS----ATEGPILLLL 80 (343)
T ss_pred cCCCCCCCCCCCcccccCCCchH-----------HhhccccccccC-----CCcc-eEEEEEecCC----CCCccEEEEe
Confidence 33444554445567889988852 233333322221 1122 3555544432 2367999999
Q ss_pred CCCCCCCCcHHHHHHHHHHH-hCCceEEEEcCCCCCCCCCCCcCCCC-cCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHH
Q 024826 120 PGLTGGSEDSYVRHMLLRAR-SKGWRVVVFNSRGCGDSPVTTPQFYS-ASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGA 197 (262)
Q Consensus 120 HG~~g~~~~~y~~~~~~~l~-~~G~~vv~~d~rG~G~s~~~~~~~~~-~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg 197 (262)
||.+.+.- +| ..++.++. +...+|+++|+||||.+........+ +.+.+|+-++++++-...+. +|++|||||||
T Consensus 81 HG~G~S~L-Sf-A~~a~el~s~~~~r~~a~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge~~~-~iilVGHSmGG 157 (343)
T KOG2564|consen 81 HGGGSSAL-SF-AIFASELKSKIRCRCLALDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGELPP-QIILVGHSMGG 157 (343)
T ss_pred ecCcccch-hH-HHHHHHHHhhcceeEEEeeccccCccccCChhhcCHHHHHHHHHHHHHHHhccCCC-ceEEEeccccc
Confidence 99844433 44 56666664 45789999999999999876554433 77888999888887754333 79999999999
Q ss_pred HHHHHHHhhcCCCCCCceEEEEcC
Q 024826 198 NILIRYLGHESHSCPLSGAVSLCN 221 (262)
Q Consensus 198 ~ia~~~a~~~~~~~~i~~~v~l~~ 221 (262)
.|+...+...-- ..+.+++++.-
T Consensus 158 aIav~~a~~k~l-psl~Gl~viDV 180 (343)
T KOG2564|consen 158 AIAVHTAASKTL-PSLAGLVVIDV 180 (343)
T ss_pred hhhhhhhhhhhc-hhhhceEEEEE
Confidence 999887765422 22777777653
No 56
>PRK07581 hypothetical protein; Validated
Probab=99.46 E-value=3.4e-13 Score=119.99 Aligned_cols=108 Identities=14% Similarity=0.241 Sum_probs=75.2
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHH---HHHHhCCceEEEEcCCCCCCCCCCCcC--CCC-c-----CcHHHHHHHHHHHH
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHML---LRARSKGWRVVVFNSRGCGDSPVTTPQ--FYS-A-----SFLGDMQEVVAHVG 180 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~---~~l~~~G~~vv~~d~rG~G~s~~~~~~--~~~-~-----~~~~Dl~~~l~~l~ 180 (262)
+.|+||++||+++++.. + ..++ ..+...+|+|+++|+||+|.|+.+... .++ . ...+|+.+....+.
T Consensus 40 ~~~~vll~~~~~~~~~~-~-~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 117 (339)
T PRK07581 40 KDNAILYPTWYSGTHQD-N-EWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLT 117 (339)
T ss_pred CCCEEEEeCCCCCCccc-c-hhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHH
Confidence 44667777777654432 2 1221 245557899999999999999754321 122 2 24678877555454
Q ss_pred hhCCCCc-EEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 181 SKYPKAH-LYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 181 ~~~~~~~-i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
...+-.+ .+++||||||.+++.++.++|++ |+++|++++..
T Consensus 118 ~~lgi~~~~~lvG~S~GG~va~~~a~~~P~~--V~~Lvli~~~~ 159 (339)
T PRK07581 118 EKFGIERLALVVGWSMGAQQTYHWAVRYPDM--VERAAPIAGTA 159 (339)
T ss_pred HHhCCCceEEEEEeCHHHHHHHHHHHHCHHH--HhhheeeecCC
Confidence 4445558 57999999999999999999998 99999997643
No 57
>PRK05855 short chain dehydrogenase; Validated
Probab=99.45 E-value=5.4e-13 Score=126.32 Aligned_cols=125 Identities=17% Similarity=0.234 Sum_probs=87.5
Q ss_pred EEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCc--CCC
Q 024826 87 ECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTP--QFY 164 (262)
Q Consensus 87 ~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~--~~~ 164 (262)
+.+...||..+.+....+. ++|+||++||+.+++. . +..+...+ ..||+|+++|+||||.|+.... ...
T Consensus 5 ~~~~~~~g~~l~~~~~g~~------~~~~ivllHG~~~~~~-~-w~~~~~~L-~~~~~Vi~~D~~G~G~S~~~~~~~~~~ 75 (582)
T PRK05855 5 RTVVSSDGVRLAVYEWGDP------DRPTVVLVHGYPDNHE-V-WDGVAPLL-ADRFRVVAYDVRGAGRSSAPKRTAAYT 75 (582)
T ss_pred EEEEeeCCEEEEEEEcCCC------CCCeEEEEcCCCchHH-H-HHHHHHHh-hcceEEEEecCCCCCCCCCCCcccccC
Confidence 4445567877766554322 4689999999977654 3 35666666 6799999999999999975432 233
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 165 SASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 165 ~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
..++++|+.++++.+.. ..+++++||||||.+++.++.+......+..++.++.+.
T Consensus 76 ~~~~a~dl~~~i~~l~~---~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~ 131 (582)
T PRK05855 76 LARLADDFAAVIDAVSP---DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPS 131 (582)
T ss_pred HHHHHHHHHHHHHHhCC---CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCc
Confidence 47788899998887653 236999999999999988887632212255555555543
No 58
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.45 E-value=2.1e-13 Score=121.69 Aligned_cols=80 Identities=15% Similarity=0.206 Sum_probs=63.3
Q ss_pred HHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceE
Q 024826 137 RARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGA 216 (262)
Q Consensus 137 ~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~ 216 (262)
.+...+|+|+++|+||+|.|... .....++++|+.++++.+... ..++++||||||++++.++.++|++ |+++
T Consensus 94 ~L~~~~~~Vi~~Dl~G~g~s~~~--~~~~~~~a~dl~~ll~~l~l~---~~~~lvG~SmGG~vA~~~A~~~P~~--V~~L 166 (343)
T PRK08775 94 ALDPARFRLLAFDFIGADGSLDV--PIDTADQADAIALLLDALGIA---RLHAFVGYSYGALVGLQFASRHPAR--VRTL 166 (343)
T ss_pred ccCccccEEEEEeCCCCCCCCCC--CCCHHHHHHHHHHHHHHcCCC---cceEEEEECHHHHHHHHHHHHChHh--hheE
Confidence 34456899999999999987422 223366788888888877542 1357999999999999999999998 9999
Q ss_pred EEEcCCc
Q 024826 217 VSLCNPF 223 (262)
Q Consensus 217 v~l~~p~ 223 (262)
|++++..
T Consensus 167 vLi~s~~ 173 (343)
T PRK08775 167 VVVSGAH 173 (343)
T ss_pred EEECccc
Confidence 9998754
No 59
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.42 E-value=6.9e-13 Score=119.94 Aligned_cols=106 Identities=15% Similarity=0.212 Sum_probs=77.6
Q ss_pred CCcEEEEECCCCCCCCcH-----------HHHHHH---HHHHhCCceEEEEcCCCC-CCCCCCC--------------cC
Q 024826 112 DSPVLILMPGLTGGSEDS-----------YVRHML---LRARSKGWRVVVFNSRGC-GDSPVTT--------------PQ 162 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~-----------y~~~~~---~~l~~~G~~vv~~d~rG~-G~s~~~~--------------~~ 162 (262)
++|+||++||++++.... ++..++ ..+...+|+|+++|++|+ |+|+... +.
T Consensus 47 ~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~ 126 (379)
T PRK00175 47 RSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPV 126 (379)
T ss_pred CCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCc
Confidence 368999999998877631 233433 134467999999999983 5553221 02
Q ss_pred CCCcCcHHHHHHHHHHHHhhCCCCc-EEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 163 FYSASFLGDMQEVVAHVGSKYPKAH-LYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 163 ~~~~~~~~Dl~~~l~~l~~~~~~~~-i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
+...++++|+.++++.+... + .+++||||||.+++.++.++|++ |+++|++++..
T Consensus 127 ~~~~~~~~~~~~~l~~l~~~----~~~~lvG~S~Gg~ia~~~a~~~p~~--v~~lvl~~~~~ 182 (379)
T PRK00175 127 ITIRDWVRAQARLLDALGIT----RLAAVVGGSMGGMQALEWAIDYPDR--VRSALVIASSA 182 (379)
T ss_pred CCHHHHHHHHHHHHHHhCCC----CceEEEEECHHHHHHHHHHHhChHh--hhEEEEECCCc
Confidence 23356677777777776543 6 58999999999999999999998 99999998754
No 60
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.42 E-value=2.4e-12 Score=99.82 Aligned_cols=93 Identities=23% Similarity=0.383 Sum_probs=75.0
Q ss_pred EEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhh-CCCCcEEEEEE
Q 024826 115 VLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSK-YPKAHLYAVGW 193 (262)
Q Consensus 115 ~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~-~~~~~i~lvG~ 193 (262)
+||++||++++.. .| ..+...++++||.|+.+|+|++|.+.. .+++.++++.+... .+..+++++||
T Consensus 1 ~vv~~HG~~~~~~-~~-~~~~~~l~~~G~~v~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~l~G~ 68 (145)
T PF12695_consen 1 VVVLLHGWGGSRR-DY-QPLAEALAEQGYAVVAFDYPGHGDSDG----------ADAVERVLADIRAGYPDPDRIILIGH 68 (145)
T ss_dssp EEEEECTTTTTTH-HH-HHHHHHHHHTTEEEEEESCTTSTTSHH----------SHHHHHHHHHHHHHHCTCCEEEEEEE
T ss_pred CEEEECCCCCCHH-HH-HHHHHHHHHCCCEEEEEecCCCCccch----------hHHHHHHHHHHHhhcCCCCcEEEEEE
Confidence 5899999987643 44 688889999999999999999987721 13667777776332 35569999999
Q ss_pred cHHHHHHHHHHhhcCCCCCCceEEEEcCC
Q 024826 194 SLGANILIRYLGHESHSCPLSGAVSLCNP 222 (262)
Q Consensus 194 SlGg~ia~~~a~~~~~~~~i~~~v~l~~p 222 (262)
|+||.+++.++.++ .+ ++++|.+++.
T Consensus 69 S~Gg~~a~~~~~~~-~~--v~~~v~~~~~ 94 (145)
T PF12695_consen 69 SMGGAIAANLAARN-PR--VKAVVLLSPY 94 (145)
T ss_dssp THHHHHHHHHHHHS-TT--ESEEEEESES
T ss_pred ccCcHHHHHHhhhc-cc--eeEEEEecCc
Confidence 99999999999988 44 9999999984
No 61
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.41 E-value=3.4e-12 Score=106.22 Aligned_cols=110 Identities=14% Similarity=0.162 Sum_probs=81.8
Q ss_pred CCCcEEEEECCCCCCCCcHHH--HHHHHHHHhCCceEEEEcCCCCCCCCCCCc----C--CCCcCcHHHHHHHHHHHHhh
Q 024826 111 PDSPVLILMPGLTGGSEDSYV--RHMLLRARSKGWRVVVFNSRGCGDSPVTTP----Q--FYSASFLGDMQEVVAHVGSK 182 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~--~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~----~--~~~~~~~~Dl~~~l~~l~~~ 182 (262)
...|+||++||.+++.. .+. ..+...+.+.||.|+++|++|++.+..... . ........|+.++++++.++
T Consensus 11 ~~~P~vv~lHG~~~~~~-~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 89 (212)
T TIGR01840 11 GPRALVLALHGCGQTAS-AYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESLHQLIDAVKAN 89 (212)
T ss_pred CCCCEEEEeCCCCCCHH-HHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHHHHHHHHHHHHh
Confidence 36899999999876544 332 124445566899999999999875432110 0 11134578899999999887
Q ss_pred CC--CCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 183 YP--KAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 183 ~~--~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
++ ..+++++|||+||.+++.++.++|+. +.++++++++.
T Consensus 90 ~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~--~~~~~~~~g~~ 130 (212)
T TIGR01840 90 YSIDPNRVYVTGLSAGGGMTAVLGCTYPDV--FAGGASNAGLP 130 (212)
T ss_pred cCcChhheEEEEECHHHHHHHHHHHhCchh--heEEEeecCCc
Confidence 64 34899999999999999999999987 88888888754
No 62
>PRK11071 esterase YqiA; Provisional
Probab=99.37 E-value=1.1e-11 Score=101.49 Aligned_cols=95 Identities=14% Similarity=0.035 Sum_probs=68.8
Q ss_pred cEEEEECCCCCCCCcHHHHHHHHHHHh--CCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEE
Q 024826 114 PVLILMPGLTGGSEDSYVRHMLLRARS--KGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAV 191 (262)
Q Consensus 114 p~vv~lHG~~g~~~~~y~~~~~~~l~~--~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lv 191 (262)
|+||++||++++...+....+...+.+ .+|+|+++|+||++ ++..+.++.+....+.++++++
T Consensus 2 p~illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~~---------------~~~~~~l~~l~~~~~~~~~~lv 66 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPYP---------------ADAAELLESLVLEHGGDPLGLV 66 (190)
T ss_pred CeEEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCCH---------------HHHHHHHHHHHHHcCCCCeEEE
Confidence 579999999888775443334455544 38999999999884 2333344444444455689999
Q ss_pred EEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHHH
Q 024826 192 GWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVIA 228 (262)
Q Consensus 192 G~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~ 228 (262)
|+||||.+++.++.++|. .+|+++++.+....
T Consensus 67 G~S~Gg~~a~~~a~~~~~-----~~vl~~~~~~~~~~ 98 (190)
T PRK11071 67 GSSLGGYYATWLSQCFML-----PAVVVNPAVRPFEL 98 (190)
T ss_pred EECHHHHHHHHHHHHcCC-----CEEEECCCCCHHHH
Confidence 999999999999999883 35889998884433
No 63
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.37 E-value=1.3e-11 Score=103.25 Aligned_cols=129 Identities=13% Similarity=0.194 Sum_probs=96.6
Q ss_pred cceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHh-CCceEEEEcCCCCCCCCCCCcC
Q 024826 84 LKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARS-KGWRVVVFNSRGCGDSPVTTPQ 162 (262)
Q Consensus 84 ~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~-~G~~vv~~d~rG~G~s~~~~~~ 162 (262)
.+-..+.+..|+.+...++.++. ...++++++||....-.+ ...+...+.. .+++++.+|++|.|.|.+...+
T Consensus 35 v~v~~~~t~rgn~~~~~y~~~~~----~~~~~lly~hGNa~Dlgq--~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~psE 108 (258)
T KOG1552|consen 35 VEVFKVKTSRGNEIVCMYVRPPE----AAHPTLLYSHGNAADLGQ--MVELFKELSIFLNCNVVSYDYSGYGRSSGKPSE 108 (258)
T ss_pred cceEEeecCCCCEEEEEEEcCcc----ccceEEEEcCCcccchHH--HHHHHHHHhhcccceEEEEecccccccCCCccc
Confidence 34445566778777666666553 146999999998554332 2233333433 4899999999999999876555
Q ss_pred CCCcCcHHHHHHHHHHHHhhC-CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcCh
Q 024826 163 FYSASFLGDMQEVVAHVGSKY-PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNL 225 (262)
Q Consensus 163 ~~~~~~~~Dl~~~l~~l~~~~-~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~ 225 (262)
....+|+.++.+++++.+ +.++|.++|+|+|+..++.+|.+.| ++++|+.+|-.+.
T Consensus 109 ---~n~y~Di~avye~Lr~~~g~~~~Iil~G~SiGt~~tv~Lasr~~----~~alVL~SPf~S~ 165 (258)
T KOG1552|consen 109 ---RNLYADIKAVYEWLRNRYGSPERIILYGQSIGTVPTVDLASRYP----LAAVVLHSPFTSG 165 (258)
T ss_pred ---ccchhhHHHHHHHHHhhcCCCceEEEEEecCCchhhhhHhhcCC----cceEEEeccchhh
Confidence 367899999999999999 4779999999999999999999987 5677777765543
No 64
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.35 E-value=9.1e-12 Score=110.19 Aligned_cols=134 Identities=21% Similarity=0.289 Sum_probs=89.7
Q ss_pred ceEEEEcCCCC-eEEEEeecCCC---CCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhC-CceEEEEcCCCCCC-CCC
Q 024826 85 KRECIRTKDDG-SVALDWISGDH---QLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSK-GWRVVVFNSRGCGD-SPV 158 (262)
Q Consensus 85 ~r~~i~~~dg~-~i~l~~~~~~~---~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~-G~~vv~~d~rG~G~-s~~ 158 (262)
....++...|. .+...|..... .....+++.||++||++++.. . ++..+..+.+. |+.|+++|.+|+|. |+.
T Consensus 26 ~~~~i~~~~g~~~~~~~w~~~~~~~~~~~~~~~~pvlllHGF~~~~~-~-w~~~~~~L~~~~~~~v~aiDl~G~g~~s~~ 103 (326)
T KOG1454|consen 26 RSTSIEIPWGPLTIRSKWIPNLDKYGSPGDKDKPPVLLLHGFGASSF-S-WRRVVPLLSKAKGLRVLAIDLPGHGYSSPL 103 (326)
T ss_pred cceEEEcccCCceeEEEEeccceeccCCCCCCCCcEEEeccccCCcc-c-HhhhccccccccceEEEEEecCCCCcCCCC
Confidence 34445555554 56666665441 011136888999999988655 3 35666666544 69999999999994 443
Q ss_pred CCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEE---EEcCCcCh
Q 024826 159 TTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAV---SLCNPFNL 225 (262)
Q Consensus 159 ~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v---~l~~p~~~ 225 (262)
+....| ...+....+...-..+...+++++|||+||.++..+|+.+|+. |++++ +++++...
T Consensus 104 ~~~~~y---~~~~~v~~i~~~~~~~~~~~~~lvghS~Gg~va~~~Aa~~P~~--V~~lv~~~~~~~~~~~ 168 (326)
T KOG1454|consen 104 PRGPLY---TLRELVELIRRFVKEVFVEPVSLVGHSLGGIVALKAAAYYPET--VDSLVLLDLLGPPVYS 168 (326)
T ss_pred CCCCce---ehhHHHHHHHHHHHhhcCcceEEEEeCcHHHHHHHHHHhCccc--ccceeeeccccccccc
Confidence 333322 2333344444444444455899999999999999999999999 99999 77776653
No 65
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.32 E-value=1.3e-11 Score=106.75 Aligned_cols=130 Identities=18% Similarity=0.110 Sum_probs=92.9
Q ss_pred CCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHH--H------HHHHhCCceEEEEcCCCCCCCCCCCcCCC
Q 024826 93 DDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHM--L------LRARSKGWRVVVFNSRGCGDSPVTTPQFY 164 (262)
Q Consensus 93 dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~--~------~~l~~~G~~vv~~d~rG~G~s~~~~~~~~ 164 (262)
||..++.+.+.| +.....+.|+||..|+++.+......... . ..++++||.||++|.||+|.|++.....
T Consensus 1 DGv~L~adv~~P-~~~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~- 78 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPM- 78 (272)
T ss_dssp TS-EEEEEEEEE---TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TT-
T ss_pred CCCEEEEEEEec-CCCCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccC-
Confidence 788899998877 22234578999999999754321111110 1 1288999999999999999998764332
Q ss_pred CcCcHHHHHHHHHHHHhhCC--CCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHH
Q 024826 165 SASFLGDMQEVVAHVGSKYP--KAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVI 227 (262)
Q Consensus 165 ~~~~~~Dl~~~l~~l~~~~~--~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~ 227 (262)
.....+|..++|+|+..+ | +.+|.++|.|++|...+..|++.+.. +++++..++..|+..
T Consensus 79 ~~~e~~D~~d~I~W~~~Q-pws~G~VGm~G~SY~G~~q~~~A~~~~p~--LkAi~p~~~~~d~~~ 140 (272)
T PF02129_consen 79 SPNEAQDGYDTIEWIAAQ-PWSNGKVGMYGISYGGFTQWAAAARRPPH--LKAIVPQSGWSDLYR 140 (272)
T ss_dssp SHHHHHHHHHHHHHHHHC-TTEEEEEEEEEETHHHHHHHHHHTTT-TT--EEEEEEESE-SBTCC
T ss_pred ChhHHHHHHHHHHHHHhC-CCCCCeEEeeccCHHHHHHHHHHhcCCCC--ceEEEecccCCcccc
Confidence 466788999999999886 4 34899999999999999999977777 999999999888644
No 66
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.31 E-value=1.6e-11 Score=128.41 Aligned_cols=102 Identities=19% Similarity=0.338 Sum_probs=77.3
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCc--------CCCCcCcHHHHHHHHHHHHhhC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTP--------QFYSASFLGDMQEVVAHVGSKY 183 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~--------~~~~~~~~~Dl~~~l~~l~~~~ 183 (262)
.+++||++||++++.. .| ..+...+. .+|+|+++|+||||.|+.... ......+++|+.++++.+.
T Consensus 1370 ~~~~vVllHG~~~s~~-~w-~~~~~~L~-~~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~l~--- 1443 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTGE-DW-IPIMKAIS-GSARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEHIT--- 1443 (1655)
T ss_pred CCCeEEEECCCCCCHH-HH-HHHHHHHh-CCCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHhC---
Confidence 4688999999988775 34 56666664 579999999999999875321 1112344555666665543
Q ss_pred CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCC
Q 024826 184 PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNP 222 (262)
Q Consensus 184 ~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p 222 (262)
..+++++||||||.+++.++.++|++ |+++|++++.
T Consensus 1444 -~~~v~LvGhSmGG~iAl~~A~~~P~~--V~~lVlis~~ 1479 (1655)
T PLN02980 1444 -PGKVTLVGYSMGARIALYMALRFSDK--IEGAVIISGS 1479 (1655)
T ss_pred -CCCEEEEEECHHHHHHHHHHHhChHh--hCEEEEECCC
Confidence 34899999999999999999999998 9999998763
No 67
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.27 E-value=5.3e-11 Score=111.17 Aligned_cols=123 Identities=11% Similarity=0.127 Sum_probs=89.0
Q ss_pred EEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHH---HHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHH-HH
Q 024826 97 VALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYV---RHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLG-DM 172 (262)
Q Consensus 97 i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~---~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~-Dl 172 (262)
+.+..+.|.. ....+++||++||+.....-..+ +.++.++.++||+|+++|+||+|.+.... ...+++. ++
T Consensus 174 ~eLi~Y~P~t--~~~~~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~---~~ddY~~~~i 248 (532)
T TIGR01838 174 FQLIQYEPTT--ETVHKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADK---TFDDYIRDGV 248 (532)
T ss_pred EEEEEeCCCC--CcCCCCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccC---ChhhhHHHHH
Confidence 4444455442 12246779999998654332111 36889999999999999999999775332 1235554 58
Q ss_pred HHHHHHHHhhCCCCcEEEEEEcHHHHHHH----HHHhhc-CCCCCCceEEEEcCCcChH
Q 024826 173 QEVVAHVGSKYPKAHLYAVGWSLGANILI----RYLGHE-SHSCPLSGAVSLCNPFNLV 226 (262)
Q Consensus 173 ~~~l~~l~~~~~~~~i~lvG~SlGg~ia~----~~a~~~-~~~~~i~~~v~l~~p~~~~ 226 (262)
.++++.+.+..+..+++++|||+||.+++ .+++.. +++ |++++.++++.|+.
T Consensus 249 ~~al~~v~~~~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~r--v~slvll~t~~Df~ 305 (532)
T TIGR01838 249 IAALEVVEAITGEKQVNCVGYCIGGTLLSTALAYLAARGDDKR--IKSATFFTTLLDFS 305 (532)
T ss_pred HHHHHHHHHhcCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCc--cceEEEEecCcCCC
Confidence 88899988877888999999999999863 345554 555 99999999998864
No 68
>PLN00021 chlorophyllase
Probab=99.27 E-value=9.1e-11 Score=103.28 Aligned_cols=116 Identities=17% Similarity=0.128 Sum_probs=82.9
Q ss_pred eEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHH
Q 024826 96 SVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEV 175 (262)
Q Consensus 96 ~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~ 175 (262)
.+.++.+.|.+ ....|+||++||+.++.. .| ..+...++++||.|+++|++|++... .....+|..++
T Consensus 38 ~~p~~v~~P~~---~g~~PvVv~lHG~~~~~~-~y-~~l~~~Las~G~~VvapD~~g~~~~~-------~~~~i~d~~~~ 105 (313)
T PLN00021 38 PKPLLVATPSE---AGTYPVLLFLHGYLLYNS-FY-SQLLQHIASHGFIVVAPQLYTLAGPD-------GTDEIKDAAAV 105 (313)
T ss_pred CceEEEEeCCC---CCCCCEEEEECCCCCCcc-cH-HHHHHHHHhCCCEEEEecCCCcCCCC-------chhhHHHHHHH
Confidence 36666666542 236799999999976543 44 67788899999999999999864321 12234566666
Q ss_pred HHHHHhh----------CCCCcEEEEEEcHHHHHHHHHHhhcCCC---CCCceEEEEcCCc
Q 024826 176 VAHVGSK----------YPKAHLYAVGWSLGANILIRYLGHESHS---CPLSGAVSLCNPF 223 (262)
Q Consensus 176 l~~l~~~----------~~~~~i~lvG~SlGg~ia~~~a~~~~~~---~~i~~~v~l~~p~ 223 (262)
++++... ...++++++|||+||.+++.++.++++. .++.+++.+++..
T Consensus 106 ~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~ 166 (313)
T PLN00021 106 INWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVD 166 (313)
T ss_pred HHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccc
Confidence 7776642 1224799999999999999999988753 2478888777643
No 69
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=99.26 E-value=6.9e-11 Score=113.28 Aligned_cols=147 Identities=12% Similarity=0.064 Sum_probs=108.0
Q ss_pred cCCCCCCcceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCC
Q 024826 77 RSLPDVKLKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDS 156 (262)
Q Consensus 77 ~~~~~~~~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s 156 (262)
........+...+...||.++..+...|.+....++-|+||++||................++.+||.|+.+|+||.++.
T Consensus 358 ~~~~~~~~e~~~~~~~dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~Gy 437 (620)
T COG1506 358 KKVKLAEPEPVTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGY 437 (620)
T ss_pred cccccCCceEEEEEcCCCCEEEEEEecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCcc
Confidence 34455667788888899999999888886533333359999999986444432234566788899999999999998765
Q ss_pred CCCC----cCCCCcCcHHHHHHHHHHHHhhC--CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChH
Q 024826 157 PVTT----PQFYSASFLGDMQEVVAHVGSKY--PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLV 226 (262)
Q Consensus 157 ~~~~----~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~ 226 (262)
.... ...+.....+|+.++++++.+.- ...++.++|+|+||.+++..+...+ . ++++++..+..+..
T Consensus 438 G~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~--f~a~~~~~~~~~~~ 510 (620)
T COG1506 438 GREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-R--FKAAVAVAGGVDWL 510 (620)
T ss_pred HHHHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-h--hheEEeccCcchhh
Confidence 3221 11233566889999999765432 2348999999999999999999888 4 88888888876643
No 70
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.26 E-value=3.6e-11 Score=107.71 Aligned_cols=141 Identities=18% Similarity=0.198 Sum_probs=90.2
Q ss_pred CCcceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCc
Q 024826 82 VKLKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTP 161 (262)
Q Consensus 82 ~~~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~ 161 (262)
...++..|+.++ +.+..+...|+. ..+.|+||++-|+.+-.. .+...+..++..+|+.++++|.||.|.|....-
T Consensus 163 ~~i~~v~iP~eg-~~I~g~LhlP~~---~~p~P~VIv~gGlDs~qe-D~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l 237 (411)
T PF06500_consen 163 YPIEEVEIPFEG-KTIPGYLHLPSG---EKPYPTVIVCGGLDSLQE-DLYRLFRDYLAPRGIAMLTVDMPGQGESPKWPL 237 (411)
T ss_dssp SEEEEEEEEETT-CEEEEEEEESSS---SS-EEEEEEE--TTS-GG-GGHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S
T ss_pred CCcEEEEEeeCC-cEEEEEEEcCCC---CCCCCEEEEeCCcchhHH-HHHHHHHHHHHhCCCEEEEEccCCCcccccCCC
Confidence 345677777765 778887766653 346788999888865544 443445566889999999999999999853221
Q ss_pred CCCCcCcHHHHHHHHHHHHhhC--CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHHHHHHH
Q 024826 162 QFYSASFLGDMQEVVAHVGSKY--PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVIADQDF 232 (262)
Q Consensus 162 ~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~~~~~ 232 (262)
. .+...-..++++++...- +..+|.++|.|+||+++.+.|..++++ |+++|+++++.+-..+....
T Consensus 238 ~---~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~R--lkavV~~Ga~vh~~ft~~~~ 305 (411)
T PF06500_consen 238 T---QDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPR--LKAVVALGAPVHHFFTDPEW 305 (411)
T ss_dssp ----S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT---SEEEEES---SCGGH-HHH
T ss_pred C---cCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccc--eeeEeeeCchHhhhhccHHH
Confidence 1 122223456778877642 345899999999999999999888887 99999999986654444333
No 71
>PRK10115 protease 2; Provisional
Probab=99.26 E-value=6.8e-11 Score=114.32 Aligned_cols=144 Identities=15% Similarity=0.189 Sum_probs=108.8
Q ss_pred CcceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcC
Q 024826 83 KLKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQ 162 (262)
Q Consensus 83 ~~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~ 162 (262)
..++..++..||..|.+.++..++.....+.|+||++||..+.+....+......++++||.|+..|.||.|+-....-.
T Consensus 415 ~~e~v~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~ 494 (686)
T PRK10115 415 RSEHLWITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYE 494 (686)
T ss_pred EEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHH
Confidence 44566677899999998665433212233569999999988877654444555678889999999999999866532111
Q ss_pred ----CCCcCcHHHHHHHHHHHHhhC--CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHHH
Q 024826 163 ----FYSASFLGDMQEVVAHVGSKY--PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVIA 228 (262)
Q Consensus 163 ----~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~ 228 (262)
..-....+|+.++++++.++. ...++.+.|.|.||.++...+.++|+. ++|+|+..+..|+...
T Consensus 495 ~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdl--f~A~v~~vp~~D~~~~ 564 (686)
T PRK10115 495 DGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPEL--FHGVIAQVPFVDVVTT 564 (686)
T ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhh--eeEEEecCCchhHhhh
Confidence 111345789999999998763 245899999999999999999999998 9999999999987654
No 72
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=99.24 E-value=2e-10 Score=97.40 Aligned_cols=124 Identities=19% Similarity=0.237 Sum_probs=93.0
Q ss_pred EcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCC-cCc
Q 024826 90 RTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYS-ASF 168 (262)
Q Consensus 90 ~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~-~~~ 168 (262)
...+|..+.++-.-.+....++..++||-+||-.|+..+ ++.+...|.+.|.+++.+|+||+|.++......++ .+.
T Consensus 12 ~~~~~~~~~~~a~y~D~~~~gs~~gTVv~~hGsPGSH~D--FkYi~~~l~~~~iR~I~iN~PGf~~t~~~~~~~~~n~er 89 (297)
T PF06342_consen 12 QAENGKIVTVQAVYEDSLPSGSPLGTVVAFHGSPGSHND--FKYIRPPLDEAGIRFIGINYPGFGFTPGYPDQQYTNEER 89 (297)
T ss_pred ccccCceEEEEEEEEecCCCCCCceeEEEecCCCCCccc--hhhhhhHHHHcCeEEEEeCCCCCCCCCCCcccccChHHH
Confidence 345677776664333322233456799999999998776 57888889999999999999999999876554443 455
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCC
Q 024826 169 LGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNP 222 (262)
Q Consensus 169 ~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p 222 (262)
..-+.++++.+..+ .++.++|||.|+-.++..+..+| ..++++++++
T Consensus 90 ~~~~~~ll~~l~i~---~~~i~~gHSrGcenal~la~~~~----~~g~~lin~~ 136 (297)
T PF06342_consen 90 QNFVNALLDELGIK---GKLIFLGHSRGCENALQLAVTHP----LHGLVLINPP 136 (297)
T ss_pred HHHHHHHHHHcCCC---CceEEEEeccchHHHHHHHhcCc----cceEEEecCC
Confidence 55666777776654 48999999999999999999885 4577777763
No 73
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.23 E-value=5e-10 Score=96.94 Aligned_cols=129 Identities=17% Similarity=0.192 Sum_probs=78.1
Q ss_pred CCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHH-HHHHhCCceEEEEcC--CCCCCCCCCC-------cCC
Q 024826 94 DGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHML-LRARSKGWRVVVFNS--RGCGDSPVTT-------PQF 163 (262)
Q Consensus 94 g~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~-~~l~~~G~~vv~~d~--rG~G~s~~~~-------~~~ 163 (262)
+....+..+.|++. ...+.|+|+++||++++.......... ..+.+.|+.|+++|. ||+|.+.... ...
T Consensus 24 ~~~~~~~v~~P~~~-~~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~~ 102 (275)
T TIGR02821 24 GVPMTFGVFLPPQA-AAGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKGAGF 102 (275)
T ss_pred CCceEEEEEcCCCc-cCCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCCccc
Confidence 33445555555421 123579999999997665533212222 333457999999998 6655332100 000
Q ss_pred C----------CcCcHHHH-HHHHHHHHhhC--CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcCh
Q 024826 164 Y----------SASFLGDM-QEVVAHVGSKY--PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNL 225 (262)
Q Consensus 164 ~----------~~~~~~Dl-~~~l~~l~~~~--~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~ 225 (262)
+ ...+.+.+ .++...+...+ ...+++++|+||||.+++.++.++|+. +++++++++..+.
T Consensus 103 ~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~--~~~~~~~~~~~~~ 175 (275)
T TIGR02821 103 YVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDR--FKSVSAFAPIVAP 175 (275)
T ss_pred cccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCccc--ceEEEEECCccCc
Confidence 0 01122232 23333344433 334899999999999999999999998 9999988887654
No 74
>PLN02442 S-formylglutathione hydrolase
Probab=99.20 E-value=4.5e-10 Score=97.70 Aligned_cols=128 Identities=14% Similarity=0.159 Sum_probs=82.1
Q ss_pred CCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHH--HHHHHHHhCCceEEEEcCCCCCC-----CCC---C-CcC
Q 024826 94 DGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVR--HMLLRARSKGWRVVVFNSRGCGD-----SPV---T-TPQ 162 (262)
Q Consensus 94 g~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~--~~~~~l~~~G~~vv~~d~rG~G~-----s~~---~-~~~ 162 (262)
|..+.+..+.|+. ....+.|+|+++||+.++.. .+.. .+...+...|+.|+++|..++|. +.. . ...
T Consensus 29 ~~~~~~~vy~P~~-~~~~~~Pvv~~lHG~~~~~~-~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~~~ 106 (283)
T PLN02442 29 GCSMTFSVYFPPA-SDSGKVPVLYWLSGLTCTDE-NFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVGAG 106 (283)
T ss_pred CCceEEEEEcCCc-ccCCCCCEEEEecCCCcChH-HHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCCcc
Confidence 4456666555542 22346899999999877654 3322 23345567799999999876651 100 0 000
Q ss_pred CC-------------CcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcCh
Q 024826 163 FY-------------SASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNL 225 (262)
Q Consensus 163 ~~-------------~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~ 225 (262)
.+ .....+++...++......+..+++++|+||||..++.++.++|+. +++++++++..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~--~~~~~~~~~~~~~ 180 (283)
T PLN02442 107 FYLNATQEKWKNWRMYDYVVKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDK--YKSVSAFAPIANP 180 (283)
T ss_pred eeeccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchh--EEEEEEECCccCc
Confidence 00 0112344444444433333456899999999999999999999998 9999999988764
No 75
>PRK10162 acetyl esterase; Provisional
Probab=99.19 E-value=6.1e-10 Score=98.44 Aligned_cols=130 Identities=12% Similarity=0.099 Sum_probs=90.3
Q ss_pred CcceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCC---CCCCcHHHHHHHHHHHh-CCceEEEEcCCCCCCCCC
Q 024826 83 KLKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLT---GGSEDSYVRHMLLRARS-KGWRVVVFNSRGCGDSPV 158 (262)
Q Consensus 83 ~~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~---g~~~~~y~~~~~~~l~~-~G~~vv~~d~rG~G~s~~ 158 (262)
..+...+...+| .+.+.++.++. ...|+||++||.+ |+.. .+ ..++..+++ .|+.|+.+|||.....+
T Consensus 56 ~~~~~~i~~~~g-~i~~~~y~P~~----~~~p~vv~~HGGg~~~g~~~-~~-~~~~~~la~~~g~~Vv~vdYrlape~~- 127 (318)
T PRK10162 56 ATRAYMVPTPYG-QVETRLYYPQP----DSQATLFYLHGGGFILGNLD-TH-DRIMRLLASYSGCTVIGIDYTLSPEAR- 127 (318)
T ss_pred eEEEEEEecCCC-ceEEEEECCCC----CCCCEEEEEeCCcccCCCch-hh-hHHHHHHHHHcCCEEEEecCCCCCCCC-
Confidence 334455555555 58888887753 2468999999965 3322 33 445666665 59999999999764322
Q ss_pred CCcCCCCcCcHHHHHHHHHHHHh---hC--CCCcEEEEEEcHHHHHHHHHHhhcCCC----CCCceEEEEcCCcChH
Q 024826 159 TTPQFYSASFLGDMQEVVAHVGS---KY--PKAHLYAVGWSLGANILIRYLGHESHS----CPLSGAVSLCNPFNLV 226 (262)
Q Consensus 159 ~~~~~~~~~~~~Dl~~~l~~l~~---~~--~~~~i~lvG~SlGg~ia~~~a~~~~~~----~~i~~~v~l~~p~~~~ 226 (262)
.....+|+.++++|+.+ ++ ...+|+++|+|+||++++..+....+. ..+.+++++++.+++.
T Consensus 128 ------~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~ 198 (318)
T PRK10162 128 ------FPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLR 198 (318)
T ss_pred ------CCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCC
Confidence 23356888888888864 23 345899999999999999988654221 2488999999887753
No 76
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.18 E-value=7.4e-11 Score=97.73 Aligned_cols=78 Identities=18% Similarity=0.291 Sum_probs=62.6
Q ss_pred ceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCC
Q 024826 143 WRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNP 222 (262)
Q Consensus 143 ~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p 222 (262)
|+|+++|.||+|.|+.........-..+|+.+.++.+.+..+..+++++||||||.+++.|++++|++ |+++|+++++
T Consensus 1 f~vi~~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~a~~~p~~--v~~lvl~~~~ 78 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALGIKKINLVGHSMGGMLALEYAAQYPER--VKKLVLISPP 78 (230)
T ss_dssp EEEEEEECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTTSSEEEEEETHHHHHHHHHHHHSGGG--EEEEEEESES
T ss_pred CEEEEEeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhCCCCeEEEEECCChHHHHHHHHHCchh--hcCcEEEeee
Confidence 78999999999999831011122333567777777777777777899999999999999999999998 9999988887
No 77
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.18 E-value=3.9e-10 Score=91.66 Aligned_cols=114 Identities=12% Similarity=0.208 Sum_probs=93.6
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAV 191 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lv 191 (262)
...++|+|||+-.+.+..++..++..+.+.|+.++.+|++|.|.|.....-......++|+..+++++.... ..--+++
T Consensus 32 s~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~n-r~v~vi~ 110 (269)
T KOG4667|consen 32 STEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNSN-RVVPVIL 110 (269)
T ss_pred CceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccccCcccchHHHHHHHHHHhccCc-eEEEEEE
Confidence 567899999999988888888889999999999999999999999875433333455699999999998631 1123589
Q ss_pred EEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHHHH
Q 024826 192 GWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVIAD 229 (262)
Q Consensus 192 G~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~~ 229 (262)
|||-||.+++.|+..+.+ +.-+|-++.-+|+....
T Consensus 111 gHSkGg~Vvl~ya~K~~d---~~~viNcsGRydl~~~I 145 (269)
T KOG4667|consen 111 GHSKGGDVVLLYASKYHD---IRNVINCSGRYDLKNGI 145 (269)
T ss_pred eecCccHHHHHHHHhhcC---chheEEcccccchhcch
Confidence 999999999999999988 78888888888876544
No 78
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=99.17 E-value=1.7e-10 Score=111.29 Aligned_cols=94 Identities=16% Similarity=0.221 Sum_probs=71.5
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCC---------CcC--CC------------CcCc
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVT---------TPQ--FY------------SASF 168 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~---------~~~--~~------------~~~~ 168 (262)
+.|+||++||++++.. . +..++..+.++||+|+++|+||||.+... ... .| ....
T Consensus 448 g~P~VVllHG~~g~~~-~-~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~ 525 (792)
T TIGR03502 448 GWPVVIYQHGITGAKE-N-ALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQS 525 (792)
T ss_pred CCcEEEEeCCCCCCHH-H-HHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHH
Confidence 4579999999988765 3 36778888889999999999999998432 111 01 1334
Q ss_pred HHHHHHHHHHHH------hh------CCCCcEEEEEEcHHHHHHHHHHhhc
Q 024826 169 LGDMQEVVAHVG------SK------YPKAHLYAVGWSLGANILIRYLGHE 207 (262)
Q Consensus 169 ~~Dl~~~l~~l~------~~------~~~~~i~lvG~SlGg~ia~~~a~~~ 207 (262)
+.|+..+...+. .. ++..+++++||||||.+...|+...
T Consensus 526 v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 526 ILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred HHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 568887777777 22 5667999999999999999999763
No 79
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.15 E-value=1.9e-10 Score=99.43 Aligned_cols=106 Identities=19% Similarity=0.262 Sum_probs=84.8
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHHHHHHHh-CCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEE
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHMLLRARS-KGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLY 189 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~-~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~ 189 (262)
...|+++++||+.|+.. .| +.+...+.+ .+..++.+|.|-||.|+..+... ...+++|+..+++.....+...++.
T Consensus 50 ~~~Pp~i~lHGl~GS~~-Nw-~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~~h~-~~~ma~dv~~Fi~~v~~~~~~~~~~ 126 (315)
T KOG2382|consen 50 ERAPPAIILHGLLGSKE-NW-RSVAKNLSRKLGRDVYAVDVRNHGSSPKITVHN-YEAMAEDVKLFIDGVGGSTRLDPVV 126 (315)
T ss_pred CCCCceEEecccccCCC-CH-HHHHHHhcccccCceEEEecccCCCCccccccC-HHHHHHHHHHHHHHcccccccCCce
Confidence 36899999999999875 43 677777754 47899999999999998765443 4678899999999997655566999
Q ss_pred EEEEcHHH-HHHHHHHhhcCCCCCCceEEEEcC
Q 024826 190 AVGWSLGA-NILIRYLGHESHSCPLSGAVSLCN 221 (262)
Q Consensus 190 lvG~SlGg-~ia~~~a~~~~~~~~i~~~v~l~~ 221 (262)
++|||||| .+++.+....|+. +..+|++..
T Consensus 127 l~GHsmGG~~~~m~~t~~~p~~--~~rliv~D~ 157 (315)
T KOG2382|consen 127 LLGHSMGGVKVAMAETLKKPDL--IERLIVEDI 157 (315)
T ss_pred ecccCcchHHHHHHHHHhcCcc--cceeEEEec
Confidence 99999999 7777778888887 666666554
No 80
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=99.13 E-value=2.1e-10 Score=80.30 Aligned_cols=64 Identities=17% Similarity=0.363 Sum_probs=49.8
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCC-CCcCcHHHHHHHHH
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQF-YSASFLGDMQEVVA 177 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~-~~~~~~~Dl~~~l~ 177 (262)
.+.+|+++||++.++. . ...++..|.++||.|+++|+||||.|+...... ....+++|+.++++
T Consensus 15 ~k~~v~i~HG~~eh~~-r-y~~~a~~L~~~G~~V~~~D~rGhG~S~g~rg~~~~~~~~v~D~~~~~~ 79 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSG-R-YAHLAEFLAEQGYAVFAYDHRGHGRSEGKRGHIDSFDDYVDDLHQFIQ 79 (79)
T ss_pred CCEEEEEeCCcHHHHH-H-HHHHHHHHHhCCCEEEEECCCcCCCCCCcccccCCHHHHHHHHHHHhC
Confidence 5899999999977665 4 488999999999999999999999998543332 22556777776653
No 81
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.08 E-value=3.3e-09 Score=89.76 Aligned_cols=128 Identities=17% Similarity=0.265 Sum_probs=93.3
Q ss_pred EEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCC-CCCCC-C-Cc-C
Q 024826 87 ECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGC-GDSPV-T-TP-Q 162 (262)
Q Consensus 87 ~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~-G~s~~-~-~~-~ 162 (262)
..+..+| ..+...+..|.. ....|.||++|++.|-. .+++..++.+++.||.|+++|+-+. |.+.. . .+ .
T Consensus 5 v~~~~~~-~~~~~~~a~P~~---~~~~P~VIv~hei~Gl~--~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~ 78 (236)
T COG0412 5 VTIPAPD-GELPAYLARPAG---AGGFPGVIVLHEIFGLN--PHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAE 78 (236)
T ss_pred eEeeCCC-ceEeEEEecCCc---CCCCCEEEEEecccCCc--hHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHH
Confidence 3455566 677777777764 12339999999998754 3579999999999999999998664 22211 1 11 0
Q ss_pred --------CCCcCcHHHHHHHHHHHHhhC--CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 163 --------FYSASFLGDMQEVVAHVGSKY--PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 163 --------~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
........|+.++++++..+. ...+|.++|+|+||.+++.++...|+ ++++++.-+..
T Consensus 79 ~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~~---v~a~v~fyg~~ 146 (236)
T COG0412 79 LETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAPE---VKAAVAFYGGL 146 (236)
T ss_pred HhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccCC---ccEEEEecCCC
Confidence 111455779999999998753 24579999999999999999998874 88888776633
No 82
>PRK11460 putative hydrolase; Provisional
Probab=99.05 E-value=2.9e-09 Score=89.95 Aligned_cols=109 Identities=13% Similarity=0.105 Sum_probs=70.1
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCc-------CCCCcCc-------HHHHHHHH
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTP-------QFYSASF-------LGDMQEVV 176 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~-------~~~~~~~-------~~Dl~~~l 176 (262)
+.+|+||++||++++... +..+...+.+.++.+.+++.+|...+..... ....... ..++.+++
T Consensus 14 ~~~~~vIlLHG~G~~~~~--~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~~~~~~~~~~~~~~~~~~l~~~i 91 (232)
T PRK11460 14 PAQQLLLLFHGVGDNPVA--MGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQGITEDNRQARVAAIMPTFIETV 91 (232)
T ss_pred CCCcEEEEEeCCCCChHH--HHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCCCCCccchHHHHHHHHHHHHHHH
Confidence 357899999999776653 4677888887777777777776532211000 0001111 12233445
Q ss_pred HHHHhhC--CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 177 AHVGSKY--PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 177 ~~l~~~~--~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
+++..++ +..+|+++|||+||.+++.++..+++. +.+++++++.+
T Consensus 92 ~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~--~~~vv~~sg~~ 138 (232)
T PRK11460 92 RYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGL--AGRVIAFSGRY 138 (232)
T ss_pred HHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCc--ceEEEEecccc
Confidence 5555444 235899999999999999999888875 66677776643
No 83
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.05 E-value=9.4e-10 Score=91.01 Aligned_cols=102 Identities=20% Similarity=0.332 Sum_probs=72.0
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhC--CceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEE
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSK--GWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYA 190 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~--G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~l 190 (262)
.|+++++||+.++..... . ....+... .|+++++|.||+|.|. .. ......+++|+..+++.+.. .++.+
T Consensus 21 ~~~i~~~hg~~~~~~~~~-~-~~~~~~~~~~~~~~~~~d~~g~g~s~-~~-~~~~~~~~~~~~~~~~~~~~----~~~~l 92 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWR-P-VFKVLPALAARYRVIAPDLRGHGRSD-PA-GYSLSAYADDLAALLDALGL----EKVVL 92 (282)
T ss_pred CCeEEEeCCCCCchhhhH-H-HHHHhhccccceEEEEecccCCCCCC-cc-cccHHHHHHHHHHHHHHhCC----CceEE
Confidence 458999999987766432 2 11122221 1999999999999997 11 11112225666666664443 36999
Q ss_pred EEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 191 VGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 191 vG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
+|||+||.++..++.++|+. ++++++++++..
T Consensus 93 ~G~S~Gg~~~~~~~~~~p~~--~~~~v~~~~~~~ 124 (282)
T COG0596 93 VGHSMGGAVALALALRHPDR--VRGLVLIGPAPP 124 (282)
T ss_pred EEecccHHHHHHHHHhcchh--hheeeEecCCCC
Confidence 99999999999999999997 999999997653
No 84
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.05 E-value=7.6e-10 Score=100.26 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=72.1
Q ss_pred CCcEEEEECCCCCCCCc-----------HHHHHHHH---HHHhCCceEEEEcCCCCCCCC-------C-----C------
Q 024826 112 DSPVLILMPGLTGGSED-----------SYVRHMLL---RARSKGWRVVVFNSRGCGDSP-------V-----T------ 159 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~-----------~y~~~~~~---~l~~~G~~vv~~d~rG~G~s~-------~-----~------ 159 (262)
..++||++|+++|+++. .|+..++- .+-...|-|+++|..|-|.|. + +
T Consensus 55 ~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~~ 134 (389)
T PRK06765 55 KSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKPY 134 (389)
T ss_pred CCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCcc
Confidence 56899999999996632 33344432 233457999999999887531 1 0
Q ss_pred ---CcCCCCcCcHHHHHHHHHHHHhhCCCCcEE-EEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCC
Q 024826 160 ---TPQFYSASFLGDMQEVVAHVGSKYPKAHLY-AVGWSLGANILIRYLGHESHSCPLSGAVSLCNP 222 (262)
Q Consensus 160 ---~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~-lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p 222 (262)
.|.....++++|+.++++. .+-.++. ++||||||++++.++.++|+. ++++|++++.
T Consensus 135 ~~~fP~~t~~d~~~~~~~ll~~----lgi~~~~~vvG~SmGG~ial~~a~~~P~~--v~~lv~ia~~ 195 (389)
T PRK06765 135 GMDFPVVTILDFVRVQKELIKS----LGIARLHAVMGPSMGGMQAQEWAVHYPHM--VERMIGVIGN 195 (389)
T ss_pred CCCCCcCcHHHHHHHHHHHHHH----cCCCCceEEEEECHHHHHHHHHHHHChHh--hheEEEEecC
Confidence 1111223444455555544 3444776 999999999999999999999 9999999764
No 85
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=99.03 E-value=2.8e-09 Score=92.26 Aligned_cols=133 Identities=17% Similarity=0.251 Sum_probs=98.9
Q ss_pred CCCcceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCC
Q 024826 81 DVKLKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTT 160 (262)
Q Consensus 81 ~~~~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~ 160 (262)
.-..+|-.+.+.||+.+..-|........+.++..||++-|.+| .|........++.||.|+.+|+||+++|.+..
T Consensus 211 ~~NG~R~kiks~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAG----FYEvG~m~tP~~lgYsvLGwNhPGFagSTG~P 286 (517)
T KOG1553|consen 211 NKNGQRLKIKSSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAG----FYEVGVMNTPAQLGYSVLGWNHPGFAGSTGLP 286 (517)
T ss_pred cCCCeEEEEeecCCcchhheeecCCCCCCCCCceEEEEecCCcc----ceEeeeecChHHhCceeeccCCCCccccCCCC
Confidence 44568999999999999888876543334556788889999876 33344455667899999999999999997642
Q ss_pred cCCCCcCcHHHHHHHHHHHHhh--CCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 161 PQFYSASFLGDMQEVVAHVGSK--YPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 161 ~~~~~~~~~~Dl~~~l~~l~~~--~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
-. ......+.+++++.... |+...|++.|+|.||.-+++.|..+|+ +++ +++.+.||
T Consensus 287 ~p---~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd---Vka-vvLDAtFD 345 (517)
T KOG1553|consen 287 YP---VNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD---VKA-VVLDATFD 345 (517)
T ss_pred Cc---ccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC---ceE-EEeecchh
Confidence 11 12233445566666554 556689999999999999999999998 666 66777776
No 86
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.01 E-value=2.4e-09 Score=107.92 Aligned_cols=122 Identities=12% Similarity=0.151 Sum_probs=80.1
Q ss_pred eEEEEeecCCCCCC--CCCCcEEEEECCCCCCCCcHHH----HHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcH
Q 024826 96 SVALDWISGDHQLL--PPDSPVLILMPGLTGGSEDSYV----RHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFL 169 (262)
Q Consensus 96 ~i~l~~~~~~~~~~--~~~~p~vv~lHG~~g~~~~~y~----~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~ 169 (262)
.+.+..+.+..... +..+++||++||+..+... |- +.++..|.++||+|+++|+ |.++..... ....+.
T Consensus 48 ~~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~~~-~d~~~~~s~v~~L~~~g~~v~~~d~---G~~~~~~~~-~~~~l~ 122 (994)
T PRK07868 48 MYRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSADM-WDVTRDDGAVGILHRAGLDPWVIDF---GSPDKVEGG-MERNLA 122 (994)
T ss_pred cEEEEEeCCCCccccccCCCCcEEEECCCCCCccc-eecCCcccHHHHHHHCCCEEEEEcC---CCCChhHcC-ccCCHH
Confidence 35666565543211 2356889999999765542 21 1247888899999999995 444432111 123444
Q ss_pred HHH---HHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcC-CCCCCceEEEEcCCcCh
Q 024826 170 GDM---QEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHES-HSCPLSGAVSLCNPFNL 225 (262)
Q Consensus 170 ~Dl---~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~-~~~~i~~~v~l~~p~~~ 225 (262)
+++ .++++.++... ..+++++||||||.+++.|++.++ ++ |+++|++++|+|+
T Consensus 123 ~~i~~l~~~l~~v~~~~-~~~v~lvG~s~GG~~a~~~aa~~~~~~--v~~lvl~~~~~d~ 179 (994)
T PRK07868 123 DHVVALSEAIDTVKDVT-GRDVHLVGYSQGGMFCYQAAAYRRSKD--IASIVTFGSPVDT 179 (994)
T ss_pred HHHHHHHHHHHHHHHhh-CCceEEEEEChhHHHHHHHHHhcCCCc--cceEEEEeccccc
Confidence 444 44444444333 348999999999999999998654 45 9999999999775
No 87
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.01 E-value=1.9e-09 Score=88.59 Aligned_cols=114 Identities=24% Similarity=0.360 Sum_probs=83.8
Q ss_pred EEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcC---CC
Q 024826 88 CIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQ---FY 164 (262)
Q Consensus 88 ~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~---~~ 164 (262)
.+..+||..+..+.++.++ +.+--+++.|.+|-.. .+.+.++..+.++||+|+.+|+||.|.|...... ..
T Consensus 9 ~l~~~DG~~l~~~~~pA~~-----~~~g~~~va~a~Gv~~-~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~ 82 (281)
T COG4757 9 HLPAPDGYSLPGQRFPADG-----KASGRLVVAGATGVGQ-YFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWR 82 (281)
T ss_pred ccccCCCccCccccccCCC-----CCCCcEEecccCCcch-hHhHHHHHHhhccCceEEEEecccccCCCccccccCccc
Confidence 4667899888888776653 2332455555555444 5568899999999999999999999999754333 22
Q ss_pred CcCc-HHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcC
Q 024826 165 SASF-LGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHES 208 (262)
Q Consensus 165 ~~~~-~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~ 208 (262)
..+| ..|+.++++++++..+..+.+.+|||+||.+.. ++++++
T Consensus 83 ~~DwA~~D~~aal~~~~~~~~~~P~y~vgHS~GGqa~g-L~~~~~ 126 (281)
T COG4757 83 YLDWARLDFPAALAALKKALPGHPLYFVGHSFGGQALG-LLGQHP 126 (281)
T ss_pred hhhhhhcchHHHHHHHHhhCCCCceEEeeccccceeec-ccccCc
Confidence 2344 349999999999988888999999999998764 344454
No 88
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=98.99 E-value=7.4e-10 Score=91.99 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=70.1
Q ss_pred HHHHHHHhCCceEEEEcCCCCCCCCCCC----cCCCCcCcHHHHHHHHHHHHhhC--CCCcEEEEEEcHHHHHHHHHHhh
Q 024826 133 HMLLRARSKGWRVVVFNSRGCGDSPVTT----PQFYSASFLGDMQEVVAHVGSKY--PKAHLYAVGWSLGANILIRYLGH 206 (262)
Q Consensus 133 ~~~~~l~~~G~~vv~~d~rG~G~s~~~~----~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvG~SlGg~ia~~~a~~ 206 (262)
.....++++||.|+.+|+||.++..... .........+|+.++++++.+++ ...+|.++|+|+||.+++..+..
T Consensus 5 ~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~ 84 (213)
T PF00326_consen 5 WNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQ 84 (213)
T ss_dssp HHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhcc
Confidence 3455788999999999999998643211 11111345789999999998875 34589999999999999999998
Q ss_pred cCCCCCCceEEEEcCCcChHH
Q 024826 207 ESHSCPLSGAVSLCNPFNLVI 227 (262)
Q Consensus 207 ~~~~~~i~~~v~l~~p~~~~~ 227 (262)
+|+. +++++..++.+|+..
T Consensus 85 ~~~~--f~a~v~~~g~~d~~~ 103 (213)
T PF00326_consen 85 HPDR--FKAAVAGAGVSDLFS 103 (213)
T ss_dssp TCCG--SSEEEEESE-SSTTC
T ss_pred ccee--eeeeeccceecchhc
Confidence 9998 999999999888544
No 89
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=98.98 E-value=6.1e-09 Score=87.53 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=73.8
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHH--------hCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRAR--------SKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKY 183 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~--------~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~ 183 (262)
++.+|||+||..|+... ++.+...+. ...++++.+|+.... +... .....+..+-+.++++.+.+.+
T Consensus 3 ~g~pVlFIhG~~Gs~~q--~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~-s~~~--g~~l~~q~~~~~~~i~~i~~~~ 77 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYKQ--VRSLASELQRKALLNDNSSHFDFFTVDFNEEL-SAFH--GRTLQRQAEFLAEAIKYILELY 77 (225)
T ss_pred CCCEEEEECcCCCCHhH--HHHHHHHHhhhhhhccCccceeEEEeccCccc-cccc--cccHHHHHHHHHHHHHHHHHhh
Confidence 46779999998876553 345554442 235788899886542 1111 1112344556667777776666
Q ss_pred -----CCCcEEEEEEcHHHHHHHHHHhhcCCC-CCCceEEEEcCCcChH
Q 024826 184 -----PKAHLYAVGWSLGANILIRYLGHESHS-CPLSGAVSLCNPFNLV 226 (262)
Q Consensus 184 -----~~~~i~lvG~SlGg~ia~~~a~~~~~~-~~i~~~v~l~~p~~~~ 226 (262)
+.++|+++||||||.++-.++...... ..|+.+|.+++|....
T Consensus 78 ~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh~g~ 126 (225)
T PF07819_consen 78 KSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPHRGS 126 (225)
T ss_pred hhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCCCCc
Confidence 667999999999999888877654422 3599999999988643
No 90
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=98.97 E-value=1.5e-09 Score=89.86 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=73.8
Q ss_pred EEEECCCC---CCCCcHHHHHHHHHHH-hCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhh-----CCCC
Q 024826 116 LILMPGLT---GGSEDSYVRHMLLRAR-SKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSK-----YPKA 186 (262)
Q Consensus 116 vv~lHG~~---g~~~~~y~~~~~~~l~-~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~-----~~~~ 186 (262)
||++||.+ |+.. .. ..++..++ +.|+.|+++|||=. |+.......+|+.++++|+.++ ++.+
T Consensus 1 v~~~HGGg~~~g~~~-~~-~~~~~~la~~~g~~v~~~~Yrl~-------p~~~~p~~~~D~~~a~~~l~~~~~~~~~d~~ 71 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKE-SH-WPFAARLAAERGFVVVSIDYRLA-------PEAPFPAALEDVKAAYRWLLKNADKLGIDPE 71 (211)
T ss_dssp EEEE--STTTSCGTT-TH-HHHHHHHHHHHTSEEEEEE---T-------TTSSTTHHHHHHHHHHHHHHHTHHHHTEEEE
T ss_pred CEEECCcccccCChH-HH-HHHHHHHHhhccEEEEEeecccc-------ccccccccccccccceeeecccccccccccc
Confidence 68999865 3333 33 45555555 48999999999954 3334467789999999999887 5667
Q ss_pred cEEEEEEcHHHHHHHHHHhhcCCC--CCCceEEEEcCCcCh
Q 024826 187 HLYAVGWSLGANILIRYLGHESHS--CPLSGAVSLCNPFNL 225 (262)
Q Consensus 187 ~i~lvG~SlGg~ia~~~a~~~~~~--~~i~~~v~l~~p~~~ 225 (262)
+|+++|+|.||++++.++....+. ..++++++++|..|+
T Consensus 72 ~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~ 112 (211)
T PF07859_consen 72 RIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDL 112 (211)
T ss_dssp EEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSST
T ss_pred ceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccc
Confidence 999999999999999999765443 358999999998877
No 91
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=98.97 E-value=4.2e-09 Score=87.83 Aligned_cols=106 Identities=16% Similarity=0.285 Sum_probs=75.5
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCC-CCCCCcC---CC-------CcCcHHHHHHHHHHH
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGD-SPVTTPQ---FY-------SASFLGDMQEVVAHV 179 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~-s~~~~~~---~~-------~~~~~~Dl~~~l~~l 179 (262)
.+.|.||++|++.|-. .+++.+++.++++||.|+++|+-+-.. ....... .. ......|+.++++++
T Consensus 12 ~~~~~Vvv~~d~~G~~--~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l 89 (218)
T PF01738_consen 12 GPRPAVVVIHDIFGLN--PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRPEQVAADLQAAVDYL 89 (218)
T ss_dssp SSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCc--hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3579999999998754 557889999999999999999765443 1111111 00 113456888899999
Q ss_pred HhhC--CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcC
Q 024826 180 GSKY--PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCN 221 (262)
Q Consensus 180 ~~~~--~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~ 221 (262)
+.+. ...+|.++|+|+||.+++.++.+. .. ++++|+.-+
T Consensus 90 ~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~--~~a~v~~yg 130 (218)
T PF01738_consen 90 RAQPEVDPGKIGVVGFCWGGKLALLLAARD-PR--VDAAVSFYG 130 (218)
T ss_dssp HCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TT--SSEEEEES-
T ss_pred HhccccCCCcEEEEEEecchHHhhhhhhhc-cc--cceEEEEcC
Confidence 8764 345999999999999999998877 44 899988887
No 92
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.97 E-value=3e-09 Score=95.91 Aligned_cols=139 Identities=19% Similarity=0.247 Sum_probs=106.5
Q ss_pred CCcceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHH----HHHHHHHHhCCceEEEEcCCCCCCCC
Q 024826 82 VKLKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYV----RHMLLRARSKGWRVVVFNSRGCGDSP 157 (262)
Q Consensus 82 ~~~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~----~~~~~~l~~~G~~vv~~d~rG~G~s~ 157 (262)
...++..+++.||-.+.++-.+... ..+|+|++.||+.++|..+.. +.+.-.|+++||+|..-|.||.-.|.
T Consensus 46 y~~E~h~V~T~DgYiL~lhRIp~~~----~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RGn~ySr 121 (403)
T KOG2624|consen 46 YPVEEHEVTTEDGYILTLHRIPRGK----KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRGNTYSR 121 (403)
T ss_pred CceEEEEEEccCCeEEEEeeecCCC----CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcCcccch
Confidence 4568888999999877777655442 578999999999988874332 24566789999999999999976664
Q ss_pred CC---Cc--C--CCC---cC-cHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCC-CCCceEEEEcCCcC
Q 024826 158 VT---TP--Q--FYS---AS-FLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHS-CPLSGAVSLCNPFN 224 (262)
Q Consensus 158 ~~---~~--~--~~~---~~-~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~-~~i~~~v~l~~p~~ 224 (262)
.. .+ . +.. .+ -.-|+-+.|+++...-+..+++.+|||.|+.+....+.+.|+- .+|+.+++++|..-
T Consensus 122 ~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~ 200 (403)
T KOG2624|consen 122 KHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEKTGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAF 200 (403)
T ss_pred hhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHhccccceEEEEEEccchhheehhcccchhhhhhheeeeecchhh
Confidence 21 11 1 111 22 2459999999999988888999999999999999999888764 35999999999773
No 93
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=98.95 E-value=1.7e-08 Score=88.81 Aligned_cols=130 Identities=15% Similarity=0.105 Sum_probs=92.4
Q ss_pred EcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCC--CCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcC
Q 024826 90 RTKDDGSVALDWISGDHQLLPPDSPVLILMPGLT--GGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSAS 167 (262)
Q Consensus 90 ~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~--g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~ 167 (262)
...++..+.++++.+. .......|+||++||.+ .++.+.........+...|+.|+++|||-. |+.....
T Consensus 57 ~~~~~~~~~~~~y~p~-~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrla-------Pe~~~p~ 128 (312)
T COG0657 57 AGPSGDGVPVRVYRPD-RKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLA-------PEHPFPA 128 (312)
T ss_pred cCCCCCceeEEEECCC-CCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCC-------CCCCCCc
Confidence 3455556778888772 12334589999999965 222223323344456778999999999955 3334456
Q ss_pred cHHHHHHHHHHHHhhC-----CCCcEEEEEEcHHHHHHHHHHhhcCCC--CCCceEEEEcCCcChHH
Q 024826 168 FLGDMQEVVAHVGSKY-----PKAHLYAVGWSLGANILIRYLGHESHS--CPLSGAVSLCNPFNLVI 227 (262)
Q Consensus 168 ~~~Dl~~~l~~l~~~~-----~~~~i~lvG~SlGg~ia~~~a~~~~~~--~~i~~~v~l~~p~~~~~ 227 (262)
..+|+.++++++.++- ..++|.++|+|.||++++.++..-.++ ....+.+.+++..|...
T Consensus 129 ~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~ 195 (312)
T COG0657 129 ALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS 195 (312)
T ss_pred hHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc
Confidence 6789999999998653 256899999999999999888765542 34788899999888765
No 94
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.94 E-value=8.4e-09 Score=96.02 Aligned_cols=121 Identities=11% Similarity=0.114 Sum_probs=93.4
Q ss_pred eEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHH------HHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcH
Q 024826 96 SVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYV------RHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFL 169 (262)
Q Consensus 96 ~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~------~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~ 169 (262)
.+.+..+.|.. ....+.+||++|.+.. ..|+ +.+++++.++||.|+++|++.-+... ......+++
T Consensus 200 l~eLiqY~P~t--e~v~~~PLLIVPp~IN---K~YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~~~~---r~~~ldDYv 271 (560)
T TIGR01839 200 VLELIQYKPIT--EQQHARPLLVVPPQIN---KFYIFDLSPEKSFVQYCLKNQLQVFIISWRNPDKAH---REWGLSTYV 271 (560)
T ss_pred ceEEEEeCCCC--CCcCCCcEEEechhhh---hhheeecCCcchHHHHHHHcCCeEEEEeCCCCChhh---cCCCHHHHH
Confidence 35555555542 1234667899998753 2343 46889999999999999999865443 223347778
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHH----HHhhcCC-CCCCceEEEEcCCcChH
Q 024826 170 GDMQEVVAHVGSKYPKAHLYAVGWSLGANILIR----YLGHESH-SCPLSGAVSLCNPFNLV 226 (262)
Q Consensus 170 ~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~----~a~~~~~-~~~i~~~v~l~~p~~~~ 226 (262)
+.+.++++.+++..+..++.++|+|+||.+++. |++.+++ + |+.++++.+++|+.
T Consensus 272 ~~i~~Ald~V~~~tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~--V~sltllatplDf~ 331 (560)
T TIGR01839 272 DALKEAVDAVRAITGSRDLNLLGACAGGLTCAALVGHLQALGQLRK--VNSLTYLVSLLDST 331 (560)
T ss_pred HHHHHHHHHHHHhcCCCCeeEEEECcchHHHHHHHHHHHhcCCCCc--eeeEEeeecccccC
Confidence 899999999999888889999999999999997 7887774 5 99999999999965
No 95
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=98.93 E-value=5.3e-09 Score=97.00 Aligned_cols=140 Identities=14% Similarity=0.049 Sum_probs=106.4
Q ss_pred CCcceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCC---cHHHHHHHH---HHHhCCceEEEEcCCCCCC
Q 024826 82 VKLKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSE---DSYVRHMLL---RARSKGWRVVVFNSRGCGD 155 (262)
Q Consensus 82 ~~~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~---~~y~~~~~~---~l~~~G~~vv~~d~rG~G~ 155 (262)
.....+.|++.||..+..|.+.|.+ ..+.|+++..+-+.-... ..-...+.. .++.+||.||..|.||+|.
T Consensus 17 ~~~~~v~V~MRDGvrL~~dIy~Pa~---~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~ 93 (563)
T COG2936 17 YIERDVMVPMRDGVRLAADIYRPAG---AGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGG 93 (563)
T ss_pred eeeeeeeEEecCCeEEEEEEEccCC---CCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEeccccccc
Confidence 3456788999999999999888764 246788888881111111 000112223 4678999999999999999
Q ss_pred CCCCCcCCCCcCcHHHHHHHHHHHHhh-CCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHH
Q 024826 156 SPVTTPQFYSASFLGDMQEVVAHVGSK-YPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVI 227 (262)
Q Consensus 156 s~~~~~~~~~~~~~~Dl~~~l~~l~~~-~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~ 227 (262)
|++....... ..++|-.++|+|+.++ ..+.++.++|.|++|...+..|++.|.. +++++..++.+|...
T Consensus 94 SeG~~~~~~~-~E~~Dg~D~I~Wia~QpWsNG~Vgm~G~SY~g~tq~~~Aa~~pPa--Lkai~p~~~~~D~y~ 163 (563)
T COG2936 94 SEGVFDPESS-REAEDGYDTIEWLAKQPWSNGNVGMLGLSYLGFTQLAAAALQPPA--LKAIAPTEGLVDRYR 163 (563)
T ss_pred CCcccceecc-ccccchhHHHHHHHhCCccCCeeeeecccHHHHHHHHHHhcCCch--heeeccccccccccc
Confidence 9987655554 5678889999999874 3567999999999999999999998887 999999999988543
No 96
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=98.90 E-value=2.2e-08 Score=83.55 Aligned_cols=107 Identities=14% Similarity=0.186 Sum_probs=73.0
Q ss_pred CCcEEEEECCCCCCCCcHHHH--HHHHHHHhCCceEEEEcCCCCCCCC--C---CCcCCCCcCcHHHHHHHHHHHHhhCC
Q 024826 112 DSPVLILMPGLTGGSEDSYVR--HMLLRARSKGWRVVVFNSRGCGDSP--V---TTPQFYSASFLGDMQEVVAHVGSKYP 184 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~--~~~~~l~~~G~~vv~~d~rG~G~s~--~---~~~~~~~~~~~~Dl~~~l~~l~~~~~ 184 (262)
+.|+||++||.+++.. .+.. .+.....++||.|+.++........ . ........+....+.++++++..+|+
T Consensus 15 ~~PLVv~LHG~~~~a~-~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~~~i~~lv~~v~~~~~ 93 (220)
T PF10503_consen 15 PVPLVVVLHGCGQSAE-DFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDVAFIAALVDYVAARYN 93 (220)
T ss_pred CCCEEEEeCCCCCCHH-HHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccchhhHHHHHHhHhhhcc
Confidence 5799999999977654 3322 1223345578999988853211111 0 11111113445667888999988875
Q ss_pred --CCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcC
Q 024826 185 --KAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCN 221 (262)
Q Consensus 185 --~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~ 221 (262)
.++|++.|+|.||+++..++..+|+. +.++.+.+.
T Consensus 94 iD~~RVyv~G~S~Gg~ma~~la~~~pd~--faa~a~~sG 130 (220)
T PF10503_consen 94 IDPSRVYVTGLSNGGMMANVLACAYPDL--FAAVAVVSG 130 (220)
T ss_pred cCCCceeeEEECHHHHHHHHHHHhCCcc--ceEEEeecc
Confidence 45899999999999999999999998 887766665
No 97
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.87 E-value=3.2e-08 Score=85.34 Aligned_cols=110 Identities=16% Similarity=0.329 Sum_probs=80.4
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHh---CCceEEEEcCCCCCCCCCC-----CcCCCC-cCcHHHHHHHHHHHHhhC
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARS---KGWRVVVFNSRGCGDSPVT-----TPQFYS-ASFLGDMQEVVAHVGSKY 183 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~---~G~~vv~~d~rG~G~s~~~-----~~~~~~-~~~~~Dl~~~l~~l~~~~ 183 (262)
+..+++++|..|-. .|...+...+.+ ..+.|+++.+.||..++.. ....++ .+.++-..++++.+...+
T Consensus 2 ~~li~~IPGNPGlv--~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~~~~~~~sL~~QI~hk~~~i~~~~~~~ 79 (266)
T PF10230_consen 2 RPLIVFIPGNPGLV--EFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFSPNGRLFSLQDQIEHKIDFIKELIPQK 79 (266)
T ss_pred cEEEEEECCCCChH--HHHHHHHHHHHHhCCCCCeeEEecCCCCcCCcccccccCCCCccCHHHHHHHHHHHHHHHhhhh
Confidence 57899999999865 445677777764 4899999999999776544 122222 444444455555555544
Q ss_pred --CCCcEEEEEEcHHHHHHHHHHhhcC-CCCCCceEEEEcCCcC
Q 024826 184 --PKAHLYAVGWSLGANILIRYLGHES-HSCPLSGAVSLCNPFN 224 (262)
Q Consensus 184 --~~~~i~lvG~SlGg~ia~~~a~~~~-~~~~i~~~v~l~~p~~ 224 (262)
++.+++++|||.|+.++++.+.+.+ ....|.+++.+.|...
T Consensus 80 ~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~ 123 (266)
T PF10230_consen 80 NKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIE 123 (266)
T ss_pred cCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccc
Confidence 5679999999999999999999999 2235999999998543
No 98
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=98.85 E-value=5.7e-08 Score=85.79 Aligned_cols=132 Identities=15% Similarity=0.103 Sum_probs=85.5
Q ss_pred cceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCC-CCC--
Q 024826 84 LKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSP-VTT-- 160 (262)
Q Consensus 84 ~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~-~~~-- 160 (262)
+....+...+|..+..++..|.+ ...+.|.||.+||.++.... + ...+ .++..||.|+.+|.||+|+.. ...
T Consensus 56 vy~v~f~s~~g~~V~g~l~~P~~--~~~~~Pavv~~hGyg~~~~~-~-~~~~-~~a~~G~~vl~~d~rGqg~~~~d~~~~ 130 (320)
T PF05448_consen 56 VYDVSFESFDGSRVYGWLYRPKN--AKGKLPAVVQFHGYGGRSGD-P-FDLL-PWAAAGYAVLAMDVRGQGGRSPDYRGS 130 (320)
T ss_dssp EEEEEEEEGGGEEEEEEEEEES---SSSSEEEEEEE--TT--GGG-H-HHHH-HHHHTT-EEEEE--TTTSSSS-B-SSB
T ss_pred EEEEEEEccCCCEEEEEEEecCC--CCCCcCEEEEecCCCCCCCC-c-cccc-ccccCCeEEEEecCCCCCCCCCCcccc
Confidence 34555566678888888887763 23467999999999877543 2 2222 456899999999999999322 110
Q ss_pred ----cCCC-------------CcCcHHHHHHHHHHHHhhC--CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcC
Q 024826 161 ----PQFY-------------SASFLGDMQEVVAHVGSKY--PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCN 221 (262)
Q Consensus 161 ----~~~~-------------~~~~~~Dl~~~l~~l~~~~--~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~ 221 (262)
...+ ......|+..+++++...- +.++|.+.|.|.||.+++..++..+. |++++...|
T Consensus 131 ~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~r---v~~~~~~vP 207 (320)
T PF05448_consen 131 SGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDPR---VKAAAADVP 207 (320)
T ss_dssp SSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSST----SEEEEESE
T ss_pred CCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCcc---ccEEEecCC
Confidence 0000 0123568888999998753 24589999999999999999998765 998888877
Q ss_pred Cc
Q 024826 222 PF 223 (262)
Q Consensus 222 p~ 223 (262)
.+
T Consensus 208 ~l 209 (320)
T PF05448_consen 208 FL 209 (320)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 99
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=98.84 E-value=2.3e-08 Score=88.61 Aligned_cols=128 Identities=14% Similarity=0.131 Sum_probs=73.3
Q ss_pred cCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCc----------------HHHHHHHHHHHhCCceEEEEcCCCCC
Q 024826 91 TKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSED----------------SYVRHMLLRARSKGWRVVVFNSRGCG 154 (262)
Q Consensus 91 ~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~----------------~y~~~~~~~l~~~G~~vv~~d~rG~G 154 (262)
+.++..+..+...|++ ...+.|.||++||-+++... .....+..+++++||.|+++|.+|+|
T Consensus 95 ~~p~~~vpaylLvPd~--~~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~g~G 172 (390)
T PF12715_consen 95 TTPGSRVPAYLLVPDG--AKGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDALGFG 172 (390)
T ss_dssp -STTB-EEEEEEEETT----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--TTSG
T ss_pred ccCCeeEEEEEEecCC--CCCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEcccccc
Confidence 3456667777666664 24467899999986543211 00123567899999999999999999
Q ss_pred CCCCCCcCC--CCcC------------------cHHHHHHHHHHHHhhC--CCCcEEEEEEcHHHHHHHHHHhhcCCCCC
Q 024826 155 DSPVTTPQF--YSAS------------------FLGDMQEVVAHVGSKY--PKAHLYAVGWSLGANILIRYLGHESHSCP 212 (262)
Q Consensus 155 ~s~~~~~~~--~~~~------------------~~~Dl~~~l~~l~~~~--~~~~i~lvG~SlGg~ia~~~a~~~~~~~~ 212 (262)
......... ...+ .+.|...+++++...- ..++|.++|+||||..+..+++..+.
T Consensus 173 ER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaALDdR--- 249 (390)
T PF12715_consen 173 ERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAALDDR--- 249 (390)
T ss_dssp GG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH-TT---
T ss_pred ccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHcchh---
Confidence 764322111 1111 1235556888887652 23489999999999999888887654
Q ss_pred CceEEEEcCCc
Q 024826 213 LSGAVSLCNPF 223 (262)
Q Consensus 213 i~~~v~l~~p~ 223 (262)
|+++|+.+-..
T Consensus 250 Ika~v~~~~l~ 260 (390)
T PF12715_consen 250 IKATVANGYLC 260 (390)
T ss_dssp --EEEEES-B-
T ss_pred hHhHhhhhhhh
Confidence 88877665544
No 100
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=98.84 E-value=7e-08 Score=80.20 Aligned_cols=138 Identities=15% Similarity=0.150 Sum_probs=85.8
Q ss_pred eEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCC-CCCCCCCcCCC
Q 024826 86 RECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGC-GDSPVTTPQFY 164 (262)
Q Consensus 86 r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~-G~s~~~~~~~~ 164 (262)
...+...||.+|.++-..|+. ..+...++||+.+|++.... . ...++.+++..||+|+-+|.-.| |.|++.-.++.
T Consensus 4 dhvi~~~~~~~I~vwet~P~~-~~~~~~~tiliA~Gf~rrmd-h-~agLA~YL~~NGFhViRyDsl~HvGlSsG~I~eft 80 (294)
T PF02273_consen 4 DHVIRLEDGRQIRVWETRPKN-NEPKRNNTILIAPGFARRMD-H-FAGLAEYLSANGFHVIRYDSLNHVGLSSGDINEFT 80 (294)
T ss_dssp EEEEEETTTEEEEEEEE---T-TS---S-EEEEE-TT-GGGG-G-GHHHHHHHHTTT--EEEE---B-------------
T ss_pred cceeEcCCCCEEEEeccCCCC-CCcccCCeEEEecchhHHHH-H-HHHHHHHHhhCCeEEEeccccccccCCCCChhhcc
Confidence 456788999999998877764 34556799999999966554 3 37889999999999999998766 88887766666
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHHHHHH
Q 024826 165 SASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVIADQD 231 (262)
Q Consensus 165 ~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~~~~ 231 (262)
.....+|+..+++|++. .+..++.++.-|+-|.+|...+++- + +.-+|...+..|+...-+.
T Consensus 81 ms~g~~sL~~V~dwl~~-~g~~~~GLIAaSLSaRIAy~Va~~i-~---lsfLitaVGVVnlr~TLe~ 142 (294)
T PF02273_consen 81 MSIGKASLLTVIDWLAT-RGIRRIGLIAASLSARIAYEVAADI-N---LSFLITAVGVVNLRDTLEK 142 (294)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---EEEEEETTHHHHHHHHTTTS------SEEEEES--S-HHHHHHH
T ss_pred hHHhHHHHHHHHHHHHh-cCCCcchhhhhhhhHHHHHHHhhcc-C---cceEEEEeeeeeHHHHHHH
Confidence 66778899999999995 4666899999999999999999854 3 6777877888888776544
No 101
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=98.84 E-value=2.9e-09 Score=94.31 Aligned_cols=115 Identities=16% Similarity=0.214 Sum_probs=69.5
Q ss_pred CCCCCcEEEEECCCCCCC-CcHHHHHHHHHHHhC---CceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhh--
Q 024826 109 LPPDSPVLILMPGLTGGS-EDSYVRHMLLRARSK---GWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSK-- 182 (262)
Q Consensus 109 ~~~~~p~vv~lHG~~g~~-~~~y~~~~~~~l~~~---G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~-- 182 (262)
....+|++|++||+.++. .+.++..+...+.++ +++|+++|+.......-.............+..+++.+...
T Consensus 67 fn~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~~Y~~a~~n~~~vg~~la~~l~~L~~~~g 146 (331)
T PF00151_consen 67 FNPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASNNYPQAVANTRLVGRQLAKFLSFLINNFG 146 (331)
T ss_dssp --TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cCCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccccccchhhhHHHHHHHHHHHHHHHHhhcC
Confidence 345799999999999988 677888888876554 89999999864422110000000011223455566666532
Q ss_pred CCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 183 YPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 183 ~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
.+.++|+++||||||+++...........+|..++.+.|.-
T Consensus 147 ~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAg 187 (331)
T PF00151_consen 147 VPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAG 187 (331)
T ss_dssp --GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-
T ss_pred CChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccc
Confidence 34568999999999999987777766623499999998843
No 102
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.82 E-value=1.4e-08 Score=85.38 Aligned_cols=131 Identities=17% Similarity=0.189 Sum_probs=93.7
Q ss_pred cceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCc--
Q 024826 84 LKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTP-- 161 (262)
Q Consensus 84 ~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~-- 161 (262)
.-+..++..+|..|..++..|.. .....|.||..||++|+..++ -.+.. ....||.|+++|.||.|.|...++
T Consensus 56 ~ydvTf~g~~g~rI~gwlvlP~~--~~~~~P~vV~fhGY~g~~g~~--~~~l~-wa~~Gyavf~MdvRGQg~~~~dt~~~ 130 (321)
T COG3458 56 VYDVTFTGYGGARIKGWLVLPRH--EKGKLPAVVQFHGYGGRGGEW--HDMLH-WAVAGYAVFVMDVRGQGSSSQDTADP 130 (321)
T ss_pred EEEEEEeccCCceEEEEEEeecc--cCCccceEEEEeeccCCCCCc--ccccc-ccccceeEEEEecccCCCccccCCCC
Confidence 33555566788899999888764 224689999999999877542 23332 346899999999999998732111
Q ss_pred -------------------CCCCcCcHHHHHHHHHHHHhhC--CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEc
Q 024826 162 -------------------QFYSASFLGDMQEVVAHVGSKY--PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLC 220 (262)
Q Consensus 162 -------------------~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~ 220 (262)
.++..+...|+..+++.+.... ...+|.+.|.|.||.+++..++-.|. |++++..-
T Consensus 131 p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~r---ik~~~~~~ 207 (321)
T COG3458 131 PGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDPR---IKAVVADY 207 (321)
T ss_pred CCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcChh---hhcccccc
Confidence 1122344568888888887643 34589999999999999999988775 77766666
Q ss_pred CC
Q 024826 221 NP 222 (262)
Q Consensus 221 ~p 222 (262)
|-
T Consensus 208 Pf 209 (321)
T COG3458 208 PF 209 (321)
T ss_pred cc
Confidence 53
No 103
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.81 E-value=9.7e-09 Score=87.57 Aligned_cols=114 Identities=22% Similarity=0.334 Sum_probs=74.0
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHH-hCCc--eEEE--EcCCCC----CCCCC--CCcC-------C---CCcCcHH
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRAR-SKGW--RVVV--FNSRGC----GDSPV--TTPQ-------F---YSASFLG 170 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~-~~G~--~vv~--~d~rG~----G~s~~--~~~~-------~---~~~~~~~ 170 (262)
...+.|++||+.|+..+ ...++..+. +.|. .++. ++--|. |.-+. ..|- . .....+.
T Consensus 10 ~~tPTifihG~~gt~~s--~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~ 87 (255)
T PF06028_consen 10 STTPTIFIHGYGGTANS--FNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAK 87 (255)
T ss_dssp S-EEEEEE--TTGGCCC--CHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHH
T ss_pred CCCcEEEECCCCCChhH--HHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHH
Confidence 34567999999988775 478888886 6664 3333 333333 11110 1110 0 1123466
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCC---CCCceEEEEcCCcChHH
Q 024826 171 DMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHS---CPLSGAVSLCNPFNLVI 227 (262)
Q Consensus 171 Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~---~~i~~~v~l~~p~~~~~ 227 (262)
.+..++.+++++|.-.++.+|||||||..++.|+..+... +++...|.|++|||-..
T Consensus 88 wl~~vl~~L~~~Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~ 147 (255)
T PF06028_consen 88 WLKKVLKYLKKKYHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGIL 147 (255)
T ss_dssp HHHHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTT
T ss_pred HHHHHHHHHHHhcCCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccc
Confidence 7889999999999999999999999999999999997654 35799999999999643
No 104
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=98.81 E-value=4e-09 Score=87.86 Aligned_cols=91 Identities=16% Similarity=0.238 Sum_probs=59.8
Q ss_pred EEEEECCCCCCCCcHHHHHHHHHHHhCCce---EEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEE
Q 024826 115 VLILMPGLTGGSEDSYVRHMLLRARSKGWR---VVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAV 191 (262)
Q Consensus 115 ~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~---vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lv 191 (262)
+||++||..++....| ..+...|.++||. ++++++-.....+.........+.+.+++++|+.+...-+. ++-+|
T Consensus 3 PVVlVHG~~~~~~~~w-~~~~~~l~~~GY~~~~vya~tyg~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~TGa-kVDIV 80 (219)
T PF01674_consen 3 PVVLVHGTGGNAYSNW-STLAPYLKAAGYCDSEVYALTYGSGNGSPSVQNAHMSCESAKQLRAFIDAVLAYTGA-KVDIV 80 (219)
T ss_dssp -EEEE--TTTTTCGGC-CHHHHHHHHTT--CCCEEEE--S-CCHHTHHHHHHB-HHHHHHHHHHHHHHHHHHT---EEEE
T ss_pred CEEEECCCCcchhhCH-HHHHHHHHHcCCCcceeEeccCCCCCCCCcccccccchhhHHHHHHHHHHHHHhhCC-EEEEE
Confidence 4899999988676665 6788899999998 79999854433221111111245567899999999987777 99999
Q ss_pred EEcHHHHHHHHHHhhc
Q 024826 192 GWSLGANILIRYLGHE 207 (262)
Q Consensus 192 G~SlGg~ia~~~a~~~ 207 (262)
|||+||.++-.|+.-.
T Consensus 81 gHS~G~~iaR~yi~~~ 96 (219)
T PF01674_consen 81 GHSMGGTIARYYIKGG 96 (219)
T ss_dssp EETCHHHHHHHHHHHC
T ss_pred EcCCcCHHHHHHHHHc
Confidence 9999999998888643
No 105
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.80 E-value=7.5e-08 Score=81.74 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=75.9
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhC--------
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKY-------- 183 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~-------- 183 (262)
.-|++||+||+. ...+.| ..+..++++.||-|+.+|+...+.. ......+++.++++|+.+..
T Consensus 16 ~yPVv~f~~G~~-~~~s~Y-s~ll~hvAShGyIVV~~d~~~~~~~-------~~~~~~~~~~~vi~Wl~~~L~~~l~~~v 86 (259)
T PF12740_consen 16 TYPVVLFLHGFL-LINSWY-SQLLEHVASHGYIVVAPDLYSIGGP-------DDTDEVASAAEVIDWLAKGLESKLPLGV 86 (259)
T ss_pred CcCEEEEeCCcC-CCHHHH-HHHHHHHHhCceEEEEecccccCCC-------CcchhHHHHHHHHHHHHhcchhhccccc
Confidence 689999999996 444455 8889999999999999997664321 12345677888888876521
Q ss_pred --CCCcEEEEEEcHHHHHHHHHHhhcCC---CCCCceEEEEcC
Q 024826 184 --PKAHLYAVGWSLGANILIRYLGHESH---SCPLSGAVSLCN 221 (262)
Q Consensus 184 --~~~~i~lvG~SlGg~ia~~~a~~~~~---~~~i~~~v~l~~ 221 (262)
+-+++.++|||-||-++...+..+.+ ...+++++.+.|
T Consensus 87 ~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDP 129 (259)
T PF12740_consen 87 KPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDP 129 (259)
T ss_pred cccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEecc
Confidence 22489999999999999998888732 123888887775
No 106
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=98.79 E-value=2.1e-08 Score=91.88 Aligned_cols=95 Identities=12% Similarity=0.154 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcC
Q 024826 129 SYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHES 208 (262)
Q Consensus 129 ~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~ 208 (262)
.|+..++..|.+.||.+ ..|++|+|.+...... ...+.+++.+.++.+.+.++..+++++||||||.++..++..++
T Consensus 108 ~~~~~li~~L~~~GY~~-~~dL~g~gYDwR~~~~--~~~~~~~Lk~lIe~~~~~~g~~kV~LVGHSMGGlva~~fl~~~p 184 (440)
T PLN02733 108 YYFHDMIEQLIKWGYKE-GKTLFGFGYDFRQSNR--LPETMDGLKKKLETVYKASGGKKVNIISHSMGGLLVKCFMSLHS 184 (440)
T ss_pred HHHHHHHHHHHHcCCcc-CCCcccCCCCcccccc--HHHHHHHHHHHHHHHHHHcCCCCEEEEEECHhHHHHHHHHHHCC
Confidence 56788999999999866 7899999987643211 24567889999999988888889999999999999999998887
Q ss_pred CC--CCCceEEEEcCCcChH
Q 024826 209 HS--CPLSGAVSLCNPFNLV 226 (262)
Q Consensus 209 ~~--~~i~~~v~l~~p~~~~ 226 (262)
+. ..|+..|.+++|++-.
T Consensus 185 ~~~~k~I~~~I~la~P~~Gs 204 (440)
T PLN02733 185 DVFEKYVNSWIAIAAPFQGA 204 (440)
T ss_pred HhHHhHhccEEEECCCCCCC
Confidence 64 3589999999999854
No 107
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.79 E-value=1e-08 Score=82.48 Aligned_cols=90 Identities=16% Similarity=0.289 Sum_probs=57.3
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcH
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSL 195 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~Sl 195 (262)
|+++||++|+..+.|...+...+... ++|-..|+ ..|.. ..|..-+.+.++.+ +.++++||||+
T Consensus 1 v~IvhG~~~s~~~HW~~wl~~~l~~~-~~V~~~~~--------~~P~~--~~W~~~l~~~i~~~-----~~~~ilVaHSL 64 (171)
T PF06821_consen 1 VLIVHGYGGSPPDHWQPWLERQLENS-VRVEQPDW--------DNPDL--DEWVQALDQAIDAI-----DEPTILVAHSL 64 (171)
T ss_dssp EEEE--TTSSTTTSTHHHHHHHHTTS-EEEEEC----------TS--H--HHHHHHHHHCCHC------TTTEEEEEETH
T ss_pred CEEeCCCCCCCccHHHHHHHHhCCCC-eEEecccc--------CCCCH--HHHHHHHHHHHhhc-----CCCeEEEEeCH
Confidence 68999999998888877777777666 77766655 11211 23333333333322 33799999999
Q ss_pred HHHHHHHHH-hhcCCCCCCceEEEEcCCc
Q 024826 196 GANILIRYL-GHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 196 Gg~ia~~~a-~~~~~~~~i~~~v~l~~p~ 223 (262)
|+..+++|+ .+...+ |.++++++++-
T Consensus 65 Gc~~~l~~l~~~~~~~--v~g~lLVAp~~ 91 (171)
T PF06821_consen 65 GCLTALRWLAEQSQKK--VAGALLVAPFD 91 (171)
T ss_dssp HHHHHHHHHHHTCCSS--EEEEEEES--S
T ss_pred HHHHHHHHHhhccccc--ccEEEEEcCCC
Confidence 999999999 555555 99988888764
No 108
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=98.78 E-value=8.6e-08 Score=82.92 Aligned_cols=120 Identities=20% Similarity=0.365 Sum_probs=78.7
Q ss_pred CCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCc-HHHHHHHHHHHhCCceEEEEcCC----CCCCCCCCCcCCCCcCc
Q 024826 94 DGSVALDWISGDHQLLPPDSPVLILMPGLTGGSED-SYVRHMLLRARSKGWRVVVFNSR----GCGDSPVTTPQFYSASF 168 (262)
Q Consensus 94 g~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~-~y~~~~~~~l~~~G~~vv~~d~r----G~G~s~~~~~~~~~~~~ 168 (262)
...+++.+..... ...-.||++-|++.+-.. .|+..++..+.+.||.++-+.++ |+|.++. ...
T Consensus 18 ~~~~afe~~~~~~----~~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL-------~~D 86 (303)
T PF08538_consen 18 PKLVAFEFTSSSS----SAPNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSL-------DRD 86 (303)
T ss_dssp CTTEEEEEEEE-T----TSSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--H-------HHH
T ss_pred CCCeEEEecCCCC----CCCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchh-------hhH
Confidence 3446666665432 145579999999876654 78899998998789999999875 4443321 456
Q ss_pred HHHHHHHHHHHHhhC----CCCcEEEEEEcHHHHHHHHHHhhcCC---CCCCceEEEEcCCcC
Q 024826 169 LGDMQEVVAHVGSKY----PKAHLYAVGWSLGANILIRYLGHESH---SCPLSGAVSLCNPFN 224 (262)
Q Consensus 169 ~~Dl~~~l~~l~~~~----~~~~i~lvG~SlGg~ia~~~a~~~~~---~~~i~~~v~l~~p~~ 224 (262)
++|+.++|++++... ...+|+++|||.|+.-+++|+..... +.+|+++|+-+|.-|
T Consensus 87 ~~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSD 149 (303)
T PF08538_consen 87 VEEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSD 149 (303)
T ss_dssp HHHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---
T ss_pred HHHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCC
Confidence 889999999999873 45699999999999999999987654 457999888888655
No 109
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=98.73 E-value=8.1e-08 Score=80.32 Aligned_cols=101 Identities=19% Similarity=0.276 Sum_probs=72.7
Q ss_pred EEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEc
Q 024826 115 VLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWS 194 (262)
Q Consensus 115 ~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~S 194 (262)
+|+++|+.+|+.. .| ..++..+....+.|+.++++|.+... +. .....+=+...++.++...+..++.++|||
T Consensus 2 ~lf~~p~~gG~~~-~y-~~la~~l~~~~~~v~~i~~~~~~~~~---~~--~~si~~la~~y~~~I~~~~~~gp~~L~G~S 74 (229)
T PF00975_consen 2 PLFCFPPAGGSAS-SY-RPLARALPDDVIGVYGIEYPGRGDDE---PP--PDSIEELASRYAEAIRARQPEGPYVLAGWS 74 (229)
T ss_dssp EEEEESSTTCSGG-GG-HHHHHHHTTTEEEEEEECSTTSCTTS---HE--ESSHHHHHHHHHHHHHHHTSSSSEEEEEET
T ss_pred eEEEEcCCccCHH-HH-HHHHHhCCCCeEEEEEEecCCCCCCC---CC--CCCHHHHHHHHHHHhhhhCCCCCeeehccC
Confidence 6899999988554 44 77887775446999999999997221 11 123333345567777777777799999999
Q ss_pred HHHHHHHHHHhhcCCC-CCCceEEEEcCC
Q 024826 195 LGANILIRYLGHESHS-CPLSGAVSLCNP 222 (262)
Q Consensus 195 lGg~ia~~~a~~~~~~-~~i~~~v~l~~p 222 (262)
+||.+|...|.+-.+. ..+..+++++++
T Consensus 75 ~Gg~lA~E~A~~Le~~G~~v~~l~liD~~ 103 (229)
T PF00975_consen 75 FGGILAFEMARQLEEAGEEVSRLILIDSP 103 (229)
T ss_dssp HHHHHHHHHHHHHHHTT-SESEEEEESCS
T ss_pred ccHHHHHHHHHHHHHhhhccCceEEecCC
Confidence 9999999999764332 238888999854
No 110
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.71 E-value=2.2e-07 Score=79.33 Aligned_cols=125 Identities=17% Similarity=0.248 Sum_probs=87.1
Q ss_pred CCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHH---HHHHHhCCceEEEEcC-------CCCCCCCCCCcC
Q 024826 93 DDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHM---LLRARSKGWRVVVFNS-------RGCGDSPVTTPQ 162 (262)
Q Consensus 93 dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~---~~~l~~~G~~vv~~d~-------rG~G~s~~~~~~ 162 (262)
+|....+.++.|.. .++++|+||++||-.++.. .+ .+. -....+.||-|+.+|- .+|+.+..+...
T Consensus 43 ~g~~r~y~l~vP~g--~~~~apLvv~LHG~~~sga-g~-~~~sg~d~lAd~~gFlV~yPdg~~~~wn~~~~~~~~~p~~~ 118 (312)
T COG3509 43 NGLKRSYRLYVPPG--LPSGAPLVVVLHGSGGSGA-GQ-LHGTGWDALADREGFLVAYPDGYDRAWNANGCGNWFGPADR 118 (312)
T ss_pred CCCccceEEEcCCC--CCCCCCEEEEEecCCCChH-Hh-hcccchhhhhcccCcEEECcCccccccCCCcccccCCcccc
Confidence 35556666666653 4456799999999876554 22 222 2334456999998842 234444333333
Q ss_pred CCCcCcHHHHHHHHHHHHhhCCCC--cEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 163 FYSASFLGDMQEVVAHVGSKYPKA--HLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 163 ~~~~~~~~Dl~~~l~~l~~~~~~~--~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
.-..+.+.+++++++.+..+|+-+ +|++.|.|-||.++..++.++|+. +.++..++...
T Consensus 119 ~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~--faa~A~VAg~~ 179 (312)
T COG3509 119 RRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDI--FAAIAPVAGLL 179 (312)
T ss_pred cCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCccc--ccceeeeeccc
Confidence 333566788999999999998654 899999999999999999999997 77776666654
No 111
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=98.67 E-value=2.6e-07 Score=77.08 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=58.0
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHHHH-HHHhCCceEEEEcCCC------CCC---CCCC--CcCCCCcCcHHH-------
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHMLL-RARSKGWRVVVFNSRG------CGD---SPVT--TPQFYSASFLGD------- 171 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~~~-~l~~~G~~vv~~d~rG------~G~---s~~~--~~~~~~~~~~~D------- 171 (262)
+.+++||++||++++. +.+ ..... ........++.++-+- .|. +-.. ..........++
T Consensus 12 ~~~~lvi~LHG~G~~~-~~~-~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~~ 89 (216)
T PF02230_consen 12 KAKPLVILLHGYGDSE-DLF-ALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAER 89 (216)
T ss_dssp T-SEEEEEE--TTS-H-HHH-HHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHHH
T ss_pred CCceEEEEECCCCCCc-chh-HHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHHH
Confidence 4789999999996544 222 23222 2233567777776642 122 1110 000000111222
Q ss_pred HHHHHHHHHhh-CCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 172 MQEVVAHVGSK-YPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 172 l~~~l~~l~~~-~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
+.++++...+. .+..+|++.|||.||++++.++..+|+. +.++|++|+.+.
T Consensus 90 l~~li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~~--~~gvv~lsG~~~ 141 (216)
T PF02230_consen 90 LDELIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPEP--LAGVVALSGYLP 141 (216)
T ss_dssp HHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSST--SSEEEEES---T
T ss_pred HHHHHHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCcC--cCEEEEeecccc
Confidence 33444433322 3556899999999999999999999997 999999998654
No 112
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=98.65 E-value=9.8e-07 Score=78.09 Aligned_cols=132 Identities=14% Similarity=0.106 Sum_probs=89.6
Q ss_pred EEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCC---CCCCcHHHHHHHHHH-HhCCceEEEEcCCCCCCCCCCCcCCC
Q 024826 89 IRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLT---GGSEDSYVRHMLLRA-RSKGWRVVVFNSRGCGDSPVTTPQFY 164 (262)
Q Consensus 89 i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~---g~~~~~y~~~~~~~l-~~~G~~vv~~d~rG~G~s~~~~~~~~ 164 (262)
+.....+.+.+..+.|.........|+||++||.+ |+........+...+ .+.+..|+.+|||=. |+..
T Consensus 66 v~~~~~~~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLA-------PEh~ 138 (336)
T KOG1515|consen 66 VTIDPFTNLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLA-------PEHP 138 (336)
T ss_pred eEecCCCCeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccC-------CCCC
Confidence 34444555777777766433325789999999976 433333334555555 667999999999954 2322
Q ss_pred CcCcHHHHHHHHHHHHhh------CCCCcEEEEEEcHHHHHHHHHHhhcC----CCCCCceEEEEcCCcChHH
Q 024826 165 SASFLGDMQEVVAHVGSK------YPKAHLYAVGWSLGANILIRYLGHES----HSCPLSGAVSLCNPFNLVI 227 (262)
Q Consensus 165 ~~~~~~Dl~~~l~~l~~~------~~~~~i~lvG~SlGg~ia~~~a~~~~----~~~~i~~~v~l~~p~~~~~ 227 (262)
.....+|..++++|+.+. -+.++++++|-|.||+++...+.+.. ...+|++.|++-|-+....
T Consensus 139 ~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~ 211 (336)
T KOG1515|consen 139 FPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTD 211 (336)
T ss_pred CCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCC
Confidence 333446777777776653 24458999999999999998886644 2357999999999776544
No 113
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.64 E-value=1.4e-06 Score=76.07 Aligned_cols=134 Identities=19% Similarity=0.169 Sum_probs=86.8
Q ss_pred CcceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHH-----HHHHHHHHhCCceEEEEcCCCCCCCC
Q 024826 83 KLKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYV-----RHMLLRARSKGWRVVVFNSRGCGDSP 157 (262)
Q Consensus 83 ~~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~-----~~~~~~l~~~G~~vv~~d~rG~G~s~ 157 (262)
..+|..+.. |+-.+..-...-.+ .++.--||++-|.++.-+..++ ..+...+.+.|-+|+++||||.|.|.
T Consensus 111 ~~kRv~Iq~-D~~~IDt~~I~~~~---a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S~ 186 (365)
T PF05677_consen 111 SVKRVPIQY-DGVKIDTMAIHQPE---AKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSST 186 (365)
T ss_pred ceeeEEEee-CCEEEEEEEeeCCC---CCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccCC
Confidence 456766666 66444333332111 2345568888887654443221 22334455679999999999999997
Q ss_pred CCCcCCCCcCcHHHHHHHHHHHHhhC---CCCcEEEEEEcHHHHHHHHHHhhcCCCC--CCceEEEEcCCc
Q 024826 158 VTTPQFYSASFLGDMQEVVAHVGSKY---PKAHLYAVGWSLGANILIRYLGHESHSC--PLSGAVSLCNPF 223 (262)
Q Consensus 158 ~~~~~~~~~~~~~Dl~~~l~~l~~~~---~~~~i~lvG~SlGg~ia~~~a~~~~~~~--~i~~~v~l~~p~ 223 (262)
+.. ...+++.|-.+++++++.+. ....|.+.|||+||.+++..+..+.... .++=.++-+-.+
T Consensus 187 G~~---s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~~~~~dgi~~~~ikDRsf 254 (365)
T PF05677_consen 187 GPP---SRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEVLKGSDGIRWFLIKDRSF 254 (365)
T ss_pred CCC---CHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcccccCCCeeEEEEecCCc
Confidence 653 23788999999999998642 2347999999999999998777664431 254444443333
No 114
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=98.63 E-value=5.8e-07 Score=81.38 Aligned_cols=108 Identities=8% Similarity=0.154 Sum_probs=82.1
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEE
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVG 192 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG 192 (262)
+|+||++.-+.|+.. .+.+.+++.+.+ |++|+++|+.--+..+.....+..+++++-+.++++++ +. +++++|
T Consensus 102 ~~pvLiV~Pl~g~~~-~L~RS~V~~Ll~-g~dVYl~DW~~p~~vp~~~~~f~ldDYi~~l~~~i~~~----G~-~v~l~G 174 (406)
T TIGR01849 102 GPAVLIVAPMSGHYA-TLLRSTVEALLP-DHDVYITDWVNARMVPLSAGKFDLEDYIDYLIEFIRFL----GP-DIHVIA 174 (406)
T ss_pred CCcEEEEcCCchHHH-HHHHHHHHHHhC-CCcEEEEeCCCCCCCchhcCCCCHHHHHHHHHHHHHHh----CC-CCcEEE
Confidence 378999999876554 456889999998 99999999987776654445555577776666666555 33 499999
Q ss_pred EcHHHHHHHHHHhhcCCC---CCCceEEEEcCCcChHH
Q 024826 193 WSLGANILIRYLGHESHS---CPLSGAVSLCNPFNLVI 227 (262)
Q Consensus 193 ~SlGg~ia~~~a~~~~~~---~~i~~~v~l~~p~~~~~ 227 (262)
+|+||..++.+++...++ ..++.++++++|.|...
T Consensus 175 vCqgG~~~laa~Al~a~~~~p~~~~sltlm~~PID~~~ 212 (406)
T TIGR01849 175 VCQPAVPVLAAVALMAENEPPAQPRSMTLMGGPIDARA 212 (406)
T ss_pred EchhhHHHHHHHHHHHhcCCCCCcceEEEEecCccCCC
Confidence 999999988777765332 24999999999999765
No 115
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.62 E-value=3.6e-07 Score=80.46 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=75.3
Q ss_pred CCcEEEEECCCCCCCCc---------HHHHHHHH---HHHhCCceEEEEcCCCCC-CCCCCC---cC--CCCc----CcH
Q 024826 112 DSPVLILMPGLTGGSED---------SYVRHMLL---RARSKGWRVVVFNSRGCG-DSPVTT---PQ--FYSA----SFL 169 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~---------~y~~~~~~---~l~~~G~~vv~~d~rG~G-~s~~~~---~~--~~~~----~~~ 169 (262)
....|++|||++|+++. .|+..++. .+-...|-|+++|.-|.+ +|..+. +. .+.. --+
T Consensus 50 ~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~ti 129 (368)
T COG2021 50 KDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVITI 129 (368)
T ss_pred CCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCcccH
Confidence 45679999999996652 14343321 223345899999988776 554332 11 1111 123
Q ss_pred HHHHHHHHHHHhhCCCCcEE-EEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 170 GDMQEVVAHVGSKYPKAHLY-AVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 170 ~Dl~~~l~~l~~~~~~~~i~-lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
+|...+-+.+....+-++++ ++|-||||+.++.++..+|+. ++.++.++...-
T Consensus 130 ~D~V~aq~~ll~~LGI~~l~avvGgSmGGMqaleWa~~yPd~--V~~~i~ia~~~r 183 (368)
T COG2021 130 RDMVRAQRLLLDALGIKKLAAVVGGSMGGMQALEWAIRYPDR--VRRAIPIATAAR 183 (368)
T ss_pred HHHHHHHHHHHHhcCcceEeeeeccChHHHHHHHHHHhChHH--Hhhhheeccccc
Confidence 45444446666666766877 999999999999999999999 999998888554
No 116
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=98.59 E-value=2.9e-07 Score=76.86 Aligned_cols=109 Identities=20% Similarity=0.223 Sum_probs=81.5
Q ss_pred cEEEEECCCCCCCCcHHHHHHHHHHHhCC-----ceEEEEcCCCCCCCCC------CCc---------CCCCcCcHHHHH
Q 024826 114 PVLILMPGLTGGSEDSYVRHMLLRARSKG-----WRVVVFNSRGCGDSPV------TTP---------QFYSASFLGDMQ 173 (262)
Q Consensus 114 p~vv~lHG~~g~~~~~y~~~~~~~l~~~G-----~~vv~~d~rG~G~s~~------~~~---------~~~~~~~~~Dl~ 173 (262)
-+.|++||.+|...+ +..++..+.+.+ --++.+|--|.=...+ ..| +.....+...+.
T Consensus 46 iPTIfIhGsgG~asS--~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~wlk 123 (288)
T COG4814 46 IPTIFIHGSGGTASS--LNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKWLK 123 (288)
T ss_pred cceEEEecCCCChhH--HHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHHHH
Confidence 346999999887764 578888886655 2345666665311111 011 112245567788
Q ss_pred HHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCC---CCCceEEEEcCCcC
Q 024826 174 EVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHS---CPLSGAVSLCNPFN 224 (262)
Q Consensus 174 ~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~---~~i~~~v~l~~p~~ 224 (262)
.++.+++++|.-.++.++||||||.-+..|+.+++.+ +++...|.++.||+
T Consensus 124 ~~msyL~~~Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 124 KAMSYLQKHYNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred HHHHHHHHhcCCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 9999999999999999999999999999999999876 58999999999998
No 117
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=98.59 E-value=1.2e-07 Score=85.59 Aligned_cols=108 Identities=18% Similarity=0.294 Sum_probs=62.1
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCC-C-C-CCc-----C-------------C--C-Cc
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDS-P-V-TTP-----Q-------------F--Y-SA 166 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s-~-~-~~~-----~-------------~--~-~~ 166 (262)
..-|+|||-||++|... .| ..++..|+.+||-|+++|+|..... . . ... . . . ..
T Consensus 98 ~~~PvvIFSHGlgg~R~-~y-S~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRT-SY-SAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPE 175 (379)
T ss_dssp S-EEEEEEE--TT--TT-TT-HHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GG
T ss_pred CCCCEEEEeCCCCcchh-hH-HHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccch
Confidence 36899999999987765 55 7888999999999999999964211 0 0 000 0 0 0 00
Q ss_pred -----------CcHHHHHHHHHHHHhh------------------C----CCCcEEEEEEcHHHHHHHHHHhhcCCCCCC
Q 024826 167 -----------SFLGDMQEVVAHVGSK------------------Y----PKAHLYAVGWSLGANILIRYLGHESHSCPL 213 (262)
Q Consensus 167 -----------~~~~Dl~~~l~~l~~~------------------~----~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i 213 (262)
-.++|+..+++.+.+. + .-.+|.++|||+||..++..+.+.. + +
T Consensus 176 ~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d~-r--~ 252 (379)
T PF03403_consen 176 EEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQDT-R--F 252 (379)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH-T-T---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhcc-C--c
Confidence 0134677777666531 0 0127999999999999999888773 3 9
Q ss_pred ceEEEEcCCc
Q 024826 214 SGAVSLCNPF 223 (262)
Q Consensus 214 ~~~v~l~~p~ 223 (262)
+++|++.+.+
T Consensus 253 ~~~I~LD~W~ 262 (379)
T PF03403_consen 253 KAGILLDPWM 262 (379)
T ss_dssp -EEEEES---
T ss_pred ceEEEeCCcc
Confidence 9999999854
No 118
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.57 E-value=1.5e-06 Score=67.91 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=81.2
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCC--CCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDS--PVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLY 189 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s--~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~ 189 (262)
...+||+-||.+++.++..+...+..++.+|+.|.-++++=.... ....|..........-+.++..++......+++
T Consensus 13 ~~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~~~t~~~~~~~~~aql~~~l~~gpLi 92 (213)
T COG3571 13 APVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRRKPPPGSGTLNPEYIVAIAQLRAGLAEGPLI 92 (213)
T ss_pred CCEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCCCCcCccccCCHHHHHHHHHHHhcccCCcee
Confidence 455788889999998888888889999999999999998643221 111122112222233344444555554555899
Q ss_pred EEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChH
Q 024826 190 AVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLV 226 (262)
Q Consensus 190 lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~ 226 (262)
+-|+||||.++...+.+-... |+++++++=||...
T Consensus 93 ~GGkSmGGR~aSmvade~~A~--i~~L~clgYPfhpp 127 (213)
T COG3571 93 IGGKSMGGRVASMVADELQAP--IDGLVCLGYPFHPP 127 (213)
T ss_pred eccccccchHHHHHHHhhcCC--cceEEEecCccCCC
Confidence 999999999999998887766 99999999988754
No 119
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=98.57 E-value=4.2e-07 Score=89.02 Aligned_cols=90 Identities=11% Similarity=0.034 Sum_probs=73.2
Q ss_pred HHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhC----------------CCCcEEEEEEcHH
Q 024826 133 HMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKY----------------PKAHLYAVGWSLG 196 (262)
Q Consensus 133 ~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~----------------~~~~i~lvG~SlG 196 (262)
.+..+++++||.|+++|.||+|+|++... .......+|..++|+|+..+. .+.+|.++|.|+|
T Consensus 270 ~~~~~~~~rGYaVV~~D~RGtg~SeG~~~-~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~ 348 (767)
T PRK05371 270 SLNDYFLPRGFAVVYVSGIGTRGSDGCPT-TGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSYL 348 (767)
T ss_pred hHHHHHHhCCeEEEEEcCCCCCCCCCcCc-cCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcHH
Confidence 34577889999999999999999987532 233556789999999998431 2469999999999
Q ss_pred HHHHHHHHhhcCCCCCCceEEEEcCCcCh
Q 024826 197 ANILIRYLGHESHSCPLSGAVSLCNPFNL 225 (262)
Q Consensus 197 g~ia~~~a~~~~~~~~i~~~v~l~~p~~~ 225 (262)
|.++...|+..+.. ++++|..++..+.
T Consensus 349 G~~~~~aAa~~pp~--LkAIVp~a~is~~ 375 (767)
T PRK05371 349 GTLPNAVATTGVEG--LETIIPEAAISSW 375 (767)
T ss_pred HHHHHHHHhhCCCc--ceEEEeeCCCCcH
Confidence 99999999888877 9999998877654
No 120
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=98.55 E-value=1.1e-06 Score=74.23 Aligned_cols=118 Identities=14% Similarity=0.154 Sum_probs=77.8
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCc--eEEEEcCCCCCCCCCC-CcCCCCcCcHHHHHHHHHHHHhhCCCCcE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGW--RVVVFNSRGCGDSPVT-TPQFYSASFLGDMQEVVAHVGSKYPKAHL 188 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~--~vv~~d~rG~G~s~~~-~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i 188 (262)
++.++|++||+.-+..+. +...+......++ .++++.+|..|....- ..+.....-..++.++++.+....+..+|
T Consensus 17 ~~~vlvfVHGyn~~f~~a-~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~~~~~~~I 95 (233)
T PF05990_consen 17 DKEVLVFVHGYNNSFEDA-LRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFYDRESARFSGPALARFLRDLARAPGIKRI 95 (233)
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHHHhCCCceEEEEEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhccCCceE
Confidence 678999999996654432 3444433344444 7899999988752211 11111122244677777887776677799
Q ss_pred EEEEEcHHHHHHHHHHhhcCCC-------CCCceEEEEcCCcChHHHHH
Q 024826 189 YAVGWSLGANILIRYLGHESHS-------CPLSGAVSLCNPFNLVIADQ 230 (262)
Q Consensus 189 ~lvG~SlGg~ia~~~a~~~~~~-------~~i~~~v~l~~p~~~~~~~~ 230 (262)
++++||||+.+++..+...... ..+..+++.+|-.|......
T Consensus 96 ~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~f~~ 144 (233)
T PF05990_consen 96 HILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDVFRS 144 (233)
T ss_pred EEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHHHHH
Confidence 9999999999999887653222 24788888988887654433
No 121
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=98.52 E-value=3.5e-07 Score=74.15 Aligned_cols=107 Identities=19% Similarity=0.251 Sum_probs=78.5
Q ss_pred CCcEEEEECCCC---CCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCC-CCcCcHHHHHHHHHHHHhhCCCC-
Q 024826 112 DSPVLILMPGLT---GGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQF-YSASFLGDMQEVVAHVGSKYPKA- 186 (262)
Q Consensus 112 ~~p~vv~lHG~~---g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~-~~~~~~~Dl~~~l~~l~~~~~~~- 186 (262)
..++.|++||.- |+.. . .-..+.-+.+.||+|.+++|-=| ++. .......|+...++++.+.+++.
T Consensus 66 ~~klfIfIHGGYW~~g~rk-~-clsiv~~a~~~gY~vasvgY~l~-------~q~htL~qt~~~~~~gv~filk~~~n~k 136 (270)
T KOG4627|consen 66 QAKLFIFIHGGYWQEGDRK-M-CLSIVGPAVRRGYRVASVGYNLC-------PQVHTLEQTMTQFTHGVNFILKYTENTK 136 (270)
T ss_pred CccEEEEEecchhhcCchh-c-ccchhhhhhhcCeEEEEeccCcC-------cccccHHHHHHHHHHHHHHHHHhcccce
Confidence 579999999842 3222 1 23456677889999999987433 221 22445678888999999998877
Q ss_pred cEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHHH
Q 024826 187 HLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVIA 228 (262)
Q Consensus 187 ~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~ 228 (262)
.+.+-|||.|+.++.....+..+ +.|.+++++|+.+++.+.
T Consensus 137 ~l~~gGHSaGAHLa~qav~R~r~-prI~gl~l~~GvY~l~EL 177 (270)
T KOG4627|consen 137 VLTFGGHSAGAHLAAQAVMRQRS-PRIWGLILLCGVYDLREL 177 (270)
T ss_pred eEEEcccchHHHHHHHHHHHhcC-chHHHHHHHhhHhhHHHH
Confidence 46788999999999998877432 349999999999987754
No 122
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.3e-06 Score=85.36 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=92.3
Q ss_pred CCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCC--cHHHHHHH-HHHHhCCceEEEEcCCCCCCCCCCCcC----CCC
Q 024826 93 DDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSE--DSYVRHML-LRARSKGWRVVVFNSRGCGDSPVTTPQ----FYS 165 (262)
Q Consensus 93 dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~--~~y~~~~~-~~l~~~G~~vv~~d~rG~G~s~~~~~~----~~~ 165 (262)
||....+....|++....++-|++|.+||..++.. +.+...+. ......|+.|+.+|.||.|+....... .--
T Consensus 506 ~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG 585 (755)
T KOG2100|consen 506 DGITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLG 585 (755)
T ss_pred ccEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcC
Confidence 67666666666655444556789999999886221 11111222 235678999999999999877543211 111
Q ss_pred cCcHHHHHHHHHHHHhhC--CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChH
Q 024826 166 ASFLGDMQEVVAHVGSKY--PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLV 226 (262)
Q Consensus 166 ~~~~~Dl~~~l~~l~~~~--~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~ 226 (262)
...++|...+++.+.+.. +..+|.++|+|.||.+++..++..+.. .++|+++++|..|+.
T Consensus 586 ~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~-~fkcgvavaPVtd~~ 647 (755)
T KOG2100|consen 586 DVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGD-VFKCGVAVAPVTDWL 647 (755)
T ss_pred CcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCc-eEEEEEEecceeeee
Confidence 234678888888877653 345899999999999999999998733 277779999988865
No 123
>COG4099 Predicted peptidase [General function prediction only]
Probab=98.51 E-value=2.6e-06 Score=72.83 Aligned_cols=130 Identities=12% Similarity=0.185 Sum_probs=78.1
Q ss_pred EEEcCCCCeEEEEeecCCCCCCCCCC-cEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCC-------CCCCC
Q 024826 88 CIRTKDDGSVALDWISGDHQLLPPDS-PVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCG-------DSPVT 159 (262)
Q Consensus 88 ~i~~~dg~~i~l~~~~~~~~~~~~~~-p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G-------~s~~~ 159 (262)
+.+...|+.+.+.++.|++-....+- |.||++||.+..+.+.+ ..+ ..|.-.++.+.+-.+ .++.-
T Consensus 165 f~d~~tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~dn~-~~l-----~sg~gaiawa~pedqcfVlAPQy~~if 238 (387)
T COG4099 165 FYDESTGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSDND-KVL-----SSGIGAIAWAGPEDQCFVLAPQYNPIF 238 (387)
T ss_pred eeccccCceeeEEEecccccCCCCccccEEEEEecCCCCCchhh-hhh-----hcCccceeeecccCceEEEcccccccc
Confidence 33445688888888888654334445 99999999875555433 111 122222222222211 01100
Q ss_pred CcC-CCCcCcHHHHHHHHH-HHHhhC--CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcCh
Q 024826 160 TPQ-FYSASFLGDMQEVVA-HVGSKY--PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNL 225 (262)
Q Consensus 160 ~~~-~~~~~~~~Dl~~~l~-~l~~~~--~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~ 225 (262)
... .....+......+++ .+..+| +.++|+++|.|+||..+..++.++|+. +++++.+|+..|-
T Consensus 239 ~d~e~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdf--FAaa~~iaG~~d~ 306 (387)
T COG4099 239 ADSEEKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDF--FAAAVPIAGGGDR 306 (387)
T ss_pred cccccccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchh--hheeeeecCCCch
Confidence 000 011222233333443 444444 355999999999999999999999998 9999999999983
No 124
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=98.48 E-value=4.3e-07 Score=77.10 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=73.0
Q ss_pred CeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCC----ceEEEEcCCCCCCC--CCCCc-----CC
Q 024826 95 GSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKG----WRVVVFNSRGCGDS--PVTTP-----QF 163 (262)
Q Consensus 95 ~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G----~~vv~~d~rG~G~s--~~~~~-----~~ 163 (262)
+...+..+.|++-.....-|+|+++||..+.....-.......+.+.| .-+++++.-+.+.. +...+ ..
T Consensus 6 ~~~~~~VylP~~y~~~~~~PvlylldG~~~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~~~~ 85 (251)
T PF00756_consen 6 RDRRVWVYLPPGYDPSKPYPVLYLLDGQSGWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSSRRA 85 (251)
T ss_dssp EEEEEEEEECTTGGTTTTEEEEEEESHTTHHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTTCBC
T ss_pred CeEEEEEEECCCCCCCCCCEEEEEccCCccccccchHHHHHHHHHHhCCCCceEEEEEeccccccccccccccccccccc
Confidence 344455444432123346799999999722111111122233333333 34556665544411 11101 00
Q ss_pred CC----cCcHHHH-HHHHHHHHhhCCCC--cEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 164 YS----ASFLGDM-QEVVAHVGSKYPKA--HLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 164 ~~----~~~~~Dl-~~~l~~l~~~~~~~--~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
.. ..+.+.+ .+++.++..+|+.. +..++|+||||..++.++.++|+. +.+++++|+.++
T Consensus 86 ~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~--F~~~~~~S~~~~ 151 (251)
T PF00756_consen 86 DDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDL--FGAVIAFSGALD 151 (251)
T ss_dssp TSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTT--ESEEEEESEESE
T ss_pred ccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccc--cccccccCcccc
Confidence 11 1222333 36778888887532 279999999999999999999998 999999997644
No 125
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=98.47 E-value=2.4e-07 Score=74.97 Aligned_cols=109 Identities=16% Similarity=0.254 Sum_probs=77.4
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEE
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVG 192 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG 192 (262)
.--|++++|.-|++...+-..+.......-+.++++|.||+|.|.-+.......-+.+|..++++-.+.. .-.++.++|
T Consensus 42 ~~~iLlipGalGs~~tDf~pql~~l~k~l~~TivawDPpGYG~SrPP~Rkf~~~ff~~Da~~avdLM~aL-k~~~fsvlG 120 (277)
T KOG2984|consen 42 PNYILLIPGALGSYKTDFPPQLLSLFKPLQVTIVAWDPPGYGTSRPPERKFEVQFFMKDAEYAVDLMEAL-KLEPFSVLG 120 (277)
T ss_pred CceeEecccccccccccCCHHHHhcCCCCceEEEEECCCCCCCCCCCcccchHHHHHHhHHHHHHHHHHh-CCCCeeEee
Confidence 3458999999998887663333333333349999999999998865433333333445555555544432 223899999
Q ss_pred EcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 193 WSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 193 ~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
+|=||..++..|+++++. |..+|++++..-
T Consensus 121 WSdGgiTalivAak~~e~--v~rmiiwga~ay 150 (277)
T KOG2984|consen 121 WSDGGITALIVAAKGKEK--VNRMIIWGAAAY 150 (277)
T ss_pred ecCCCeEEEEeeccChhh--hhhheeecccce
Confidence 999999999999999998 999999887443
No 126
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.45 E-value=9.4e-07 Score=74.33 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=75.5
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhC----C---
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKY----P--- 184 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~----~--- 184 (262)
.-|+|+++||+.-. + .|...+..+++.+||-|+++++-.... + ...+.+++..++++|+.+.. |
T Consensus 45 ~yPVilF~HG~~l~-n-s~Ys~lL~HIASHGfIVVAPQl~~~~~-----p--~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V 115 (307)
T PF07224_consen 45 TYPVILFLHGFNLY-N-SFYSQLLAHIASHGFIVVAPQLYTLFP-----P--DGQDEIKSAASVINWLPEGLQHVLPENV 115 (307)
T ss_pred CccEEEEeechhhh-h-HHHHHHHHHHhhcCeEEEechhhcccC-----C--CchHHHHHHHHHHHHHHhhhhhhCCCCc
Confidence 67999999998543 3 444778889999999999999764311 1 22455678888888887542 1
Q ss_pred ---CCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcC
Q 024826 185 ---KAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCN 221 (262)
Q Consensus 185 ---~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~ 221 (262)
-.++.++|||.||-++...|..+...-++.++|.+.|
T Consensus 116 ~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDP 155 (307)
T PF07224_consen 116 EANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDP 155 (307)
T ss_pred ccccceEEEeecCCccHHHHHHHhcccccCchhheecccc
Confidence 2389999999999999999988764445777776665
No 127
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=98.40 E-value=6.4e-06 Score=67.16 Aligned_cols=97 Identities=11% Similarity=0.078 Sum_probs=63.8
Q ss_pred EEEEECCCCCCCCcHHHHHHHHHHHhCCc--eEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEE
Q 024826 115 VLILMPGLTGGSEDSYVRHMLLRARSKGW--RVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVG 192 (262)
Q Consensus 115 ~vv~lHG~~g~~~~~y~~~~~~~l~~~G~--~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG 192 (262)
.++++||+.++..+.=...+...+.+.+. .+.++|++. ..+++.+.++.+........+.++|
T Consensus 1 ~ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~---------------~p~~a~~~l~~~i~~~~~~~~~liG 65 (187)
T PF05728_consen 1 MILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPP---------------FPEEAIAQLEQLIEELKPENVVLIG 65 (187)
T ss_pred CeEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCc---------------CHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 37999999887765433445556666654 444444431 1234444444444444444699999
Q ss_pred EcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHHHHHH
Q 024826 193 WSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVIADQD 231 (262)
Q Consensus 193 ~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~~~~ 231 (262)
.||||..+..++..++ +++ |+++|.++.....+.
T Consensus 66 SSlGG~~A~~La~~~~----~~a-vLiNPav~p~~~l~~ 99 (187)
T PF05728_consen 66 SSLGGFYATYLAERYG----LPA-VLINPAVRPYELLQD 99 (187)
T ss_pred EChHHHHHHHHHHHhC----CCE-EEEcCCCCHHHHHHH
Confidence 9999999999888875 444 999998886665443
No 128
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=98.39 E-value=3e-05 Score=66.36 Aligned_cols=127 Identities=18% Similarity=0.260 Sum_probs=88.1
Q ss_pred cceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHH-----HHHHHhCCceEEEEcCCCCCCCCC
Q 024826 84 LKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHM-----LLRARSKGWRVVVFNSRGCGDSPV 158 (262)
Q Consensus 84 ~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~-----~~~l~~~G~~vv~~d~rG~G~s~~ 158 (262)
.+++.|.+..| .+++..+...+ .++|.+|-.|.++-+..+-+ +.+ ...+.++ |-++-+|.||+-.-..
T Consensus 22 ~~e~~V~T~~G-~v~V~V~Gd~~----~~kpaiiTyhDlglN~~scF-q~ff~~p~m~ei~~~-fcv~HV~~PGqe~gAp 94 (326)
T KOG2931|consen 22 CQEHDVETAHG-VVHVTVYGDPK----GNKPAIITYHDLGLNHKSCF-QGFFNFPDMAEILEH-FCVYHVDAPGQEDGAP 94 (326)
T ss_pred ceeeeeccccc-cEEEEEecCCC----CCCceEEEecccccchHhHh-HHhhcCHhHHHHHhh-eEEEecCCCccccCCc
Confidence 56777877775 45555544321 26888999999866554323 333 2344555 8999999999954332
Q ss_pred CCcCCCC----cCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 159 TTPQFYS----ASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 159 ~~~~~~~----~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
..+..|. ++.++++..++++..-+ .+..+|.-.||+|++++|..+|++ |-++|++++--
T Consensus 95 ~~p~~y~yPsmd~LAd~l~~VL~~f~lk----~vIg~GvGAGAyIL~rFAl~hp~r--V~GLvLIn~~~ 157 (326)
T KOG2931|consen 95 SFPEGYPYPSMDDLADMLPEVLDHFGLK----SVIGMGVGAGAYILARFALNHPER--VLGLVLINCDP 157 (326)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhcCcc----eEEEecccccHHHHHHHHhcChhh--eeEEEEEecCC
Confidence 2233322 45566666666666654 899999999999999999999999 99999988744
No 129
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.8e-06 Score=78.28 Aligned_cols=131 Identities=18% Similarity=0.167 Sum_probs=88.4
Q ss_pred EEE--EcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCC-----CC--cHHHHHHHHHHHhCCceEEEEcCCCCCCCC
Q 024826 87 ECI--RTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGG-----SE--DSYVRHMLLRARSKGWRVVVFNSRGCGDSP 157 (262)
Q Consensus 87 ~~i--~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~-----~~--~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~ 157 (262)
+++ ..+.|-.+-...+.|.+-...++-|+|+.+.|..+- +. -.|++ ...|+..||-|+++|.||.....
T Consensus 614 eif~fqs~tg~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfkgi~ylR--~~~LaslGy~Vv~IDnRGS~hRG 691 (867)
T KOG2281|consen 614 EIFSFQSKTGLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFKGIQYLR--FCRLASLGYVVVFIDNRGSAHRG 691 (867)
T ss_pred hheeeecCCCcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeeccccceehhh--hhhhhhcceEEEEEcCCCccccc
Confidence 444 454454455556677655555678999999997742 11 11222 34678899999999999987655
Q ss_pred CCCcCCCC----cCcHHHHHHHHHHHHhhCC---CCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcC
Q 024826 158 VTTPQFYS----ASFLGDMQEVVAHVGSKYP---KAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCN 221 (262)
Q Consensus 158 ~~~~~~~~----~~~~~Dl~~~l~~l~~~~~---~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~ 221 (262)
........ .-.++|-.+.++++.++++ -+++.+-|+|+||.+++..+.++|+- ++++|+=+|
T Consensus 692 lkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~I--frvAIAGap 760 (867)
T KOG2281|consen 692 LKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNI--FRVAIAGAP 760 (867)
T ss_pred hhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcce--eeEEeccCc
Confidence 43221111 1225677778888888774 35899999999999999999999995 555444433
No 130
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=98.37 E-value=1.8e-06 Score=80.70 Aligned_cols=125 Identities=16% Similarity=0.063 Sum_probs=76.7
Q ss_pred eEEEEeecCCCCCCCCCCcEEEEECCCC---CCCCcHHHHHHHHHHHh-C-CceEEEEcCC-CCCCCC-CCCcCCCCcCc
Q 024826 96 SVALDWISGDHQLLPPDSPVLILMPGLT---GGSEDSYVRHMLLRARS-K-GWRVVVFNSR-GCGDSP-VTTPQFYSASF 168 (262)
Q Consensus 96 ~i~l~~~~~~~~~~~~~~p~vv~lHG~~---g~~~~~y~~~~~~~l~~-~-G~~vv~~d~r-G~G~s~-~~~~~~~~~~~ 168 (262)
.+.++.+.|......++.|+||++||.+ |+... + ....+.. . ++.|+.+||| |.-+-. ..........-
T Consensus 78 cl~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~-~---~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n~g 153 (493)
T cd00312 78 CLYLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSL-Y---PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGNYG 153 (493)
T ss_pred CCeEEEEeCCCCCCCCCCCEEEEEcCCccccCCCCC-C---ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcchh
Confidence 4666766665322234679999999953 33222 1 1123333 3 3999999999 442211 11111111122
Q ss_pred HHHHHHHHHHHHhh---C--CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 169 LGDMQEVVAHVGSK---Y--PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 169 ~~Dl~~~l~~l~~~---~--~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
..|..++++|+++. + ...+|.++|+|.||..+..++.....+..++++|+.|+...
T Consensus 154 ~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 154 LKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 57999999999864 3 23489999999999999888776433334788888877443
No 131
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.33 E-value=3.3e-06 Score=74.59 Aligned_cols=114 Identities=15% Similarity=0.125 Sum_probs=78.5
Q ss_pred CCeEEEEeecCCCCCC---CCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCC--CCCCCCCcC---C--
Q 024826 94 DGSVALDWISGDHQLL---PPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGC--GDSPVTTPQ---F-- 163 (262)
Q Consensus 94 g~~i~l~~~~~~~~~~---~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~--G~s~~~~~~---~-- 163 (262)
++.+.++.+.+..... ....|+|++-||.++... .+ ..+...+++.||-|..+|++|. |+.+..... +
T Consensus 49 ~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~~~-~f-~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p 126 (365)
T COG4188 49 DRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSYVT-GF-AWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAP 126 (365)
T ss_pred CCccccceeccCCCccccccCcCCeEEecCCCCCCcc-ch-hhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccch
Confidence 4556666554432111 125799999999976644 33 5778889999999999999985 333321111 1
Q ss_pred -CCcCcHHHHHHHHHHHHhh-----C----CCCcEEEEEEcHHHHHHHHHHhhcCC
Q 024826 164 -YSASFLGDMQEVVAHVGSK-----Y----PKAHLYAVGWSLGANILIRYLGHESH 209 (262)
Q Consensus 164 -~~~~~~~Dl~~~l~~l~~~-----~----~~~~i~lvG~SlGg~ia~~~a~~~~~ 209 (262)
...+...|+..+++++.+. . ...+|.++|||+||..++..++.+.+
T Consensus 127 ~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 127 AEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred hhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhcccccc
Confidence 1135567999999888766 1 23489999999999999998877654
No 132
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.33 E-value=1.5e-06 Score=70.18 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=81.2
Q ss_pred cEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEE
Q 024826 114 PVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGW 193 (262)
Q Consensus 114 p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~ 193 (262)
..+|++-|=+|.. ..-+.++..++++|+.|+.+|.+-+-.+..++ .+.+.|+..++++..++.+..++.++|+
T Consensus 3 t~~v~~SGDgGw~--~~d~~~a~~l~~~G~~VvGvdsl~Yfw~~rtP-----~~~a~Dl~~~i~~y~~~w~~~~vvLiGY 75 (192)
T PF06057_consen 3 TLAVFFSGDGGWR--DLDKQIAEALAKQGVPVVGVDSLRYFWSERTP-----EQTAADLARIIRHYRARWGRKRVVLIGY 75 (192)
T ss_pred EEEEEEeCCCCch--hhhHHHHHHHHHCCCeEEEechHHHHhhhCCH-----HHHHHHHHHHHHHHHHHhCCceEEEEee
Confidence 3577887765543 44568889999999999999987665554332 4558999999999999988889999999
Q ss_pred cHHHHHHHHHHhhcCCC--CCCceEEEEcCCc
Q 024826 194 SLGANILIRYLGHESHS--CPLSGAVSLCNPF 223 (262)
Q Consensus 194 SlGg~ia~~~a~~~~~~--~~i~~~v~l~~p~ 223 (262)
|+|+-++.....+-|.. .+|+.++++++.-
T Consensus 76 SFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~ 107 (192)
T PF06057_consen 76 SFGADVLPFIYNRLPAALRARVAQVVLLSPST 107 (192)
T ss_pred cCCchhHHHHHhhCCHHHHhheeEEEEeccCC
Confidence 99999888888777754 4688888888743
No 133
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.32 E-value=3.4e-06 Score=71.98 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=75.9
Q ss_pred cEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEE
Q 024826 114 PVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGW 193 (262)
Q Consensus 114 p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~ 193 (262)
|++.++|+..|... . +..+...+... ..|+.++.||.+.-... ....-+-+.+.++.+++..|..+++++|+
T Consensus 1 ~pLF~fhp~~G~~~-~-~~~L~~~l~~~-~~v~~l~a~g~~~~~~~-----~~~l~~~a~~yv~~Ir~~QP~GPy~L~G~ 72 (257)
T COG3319 1 PPLFCFHPAGGSVL-A-YAPLAAALGPL-LPVYGLQAPGYGAGEQP-----FASLDDMAAAYVAAIRRVQPEGPYVLLGW 72 (257)
T ss_pred CCEEEEcCCCCcHH-H-HHHHHHHhccC-ceeeccccCcccccccc-----cCCHHHHHHHHHHHHHHhCCCCCEEEEee
Confidence 56899999977654 2 46666666554 99999999999753211 13333445677788888888889999999
Q ss_pred cHHHHHHHHHHhhcCCC-CCCceEEEEcCCcC
Q 024826 194 SLGANILIRYLGHESHS-CPLSGAVSLCNPFN 224 (262)
Q Consensus 194 SlGg~ia~~~a~~~~~~-~~i~~~v~l~~p~~ 224 (262)
|+||+++...|.+--.. ..+..++++.++-.
T Consensus 73 S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 73 SLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred ccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 99999999998764322 14888888888766
No 134
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.30 E-value=8.6e-06 Score=71.65 Aligned_cols=116 Identities=14% Similarity=0.171 Sum_probs=82.8
Q ss_pred CCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhC---C------ceEEEEcCCCCCCCCCCCcCCC
Q 024826 94 DGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSK---G------WRVVVFNSRGCGDSPVTTPQFY 164 (262)
Q Consensus 94 g~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~---G------~~vv~~d~rG~G~s~~~~~~~~ 164 (262)
|-.|+.-.+.+......+.--+++++|||.|+..+.| .++..|.+. | |.|+++..+|+|.|+.++...+
T Consensus 133 GL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGsv~EFy--kfIPlLT~p~~hg~~~d~~FEVI~PSlPGygwSd~~sk~GF 210 (469)
T KOG2565|consen 133 GLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGSVREFY--KFIPLLTDPKRHGNESDYAFEVIAPSLPGYGWSDAPSKTGF 210 (469)
T ss_pred ceeEEEEEecCCccccCCcccceEEecCCCchHHHHH--hhhhhhcCccccCCccceeEEEeccCCCCcccCcCCccCCc
Confidence 5445444444432222333456899999999988765 666666443 3 7999999999999998766655
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceE
Q 024826 165 SASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGA 216 (262)
Q Consensus 165 ~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~ 216 (262)
+. ..+..++..+--+.+-.++++=|--+|+.|..+++..+|++ |.+.
T Consensus 211 n~---~a~ArvmrkLMlRLg~nkffiqGgDwGSiI~snlasLyPen--V~Gl 257 (469)
T KOG2565|consen 211 NA---AATARVMRKLMLRLGYNKFFIQGGDWGSIIGSNLASLYPEN--VLGL 257 (469)
T ss_pred cH---HHHHHHHHHHHHHhCcceeEeecCchHHHHHHHHHhhcchh--hhHh
Confidence 42 23344555555566666999999999999999999999998 7664
No 135
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.30 E-value=2.6e-06 Score=67.60 Aligned_cols=92 Identities=14% Similarity=0.274 Sum_probs=58.7
Q ss_pred cEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEE
Q 024826 114 PVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGW 193 (262)
Q Consensus 114 p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~ 193 (262)
+.+|++||+.|++...|.......+.. +-.++. .+...|. .++|++-+.+.++.+ ..++++|+|
T Consensus 3 ~~~lIVpG~~~Sg~~HWq~~we~~l~~----a~rveq-----~~w~~P~--~~dWi~~l~~~v~a~-----~~~~vlVAH 66 (181)
T COG3545 3 TDVLIVPGYGGSGPNHWQSRWESALPN----ARRVEQ-----DDWEAPV--LDDWIARLEKEVNAA-----EGPVVLVAH 66 (181)
T ss_pred ceEEEecCCCCCChhHHHHHHHhhCcc----chhccc-----CCCCCCC--HHHHHHHHHHHHhcc-----CCCeEEEEe
Confidence 458999999988876665544333321 222222 1111121 144444444444433 226999999
Q ss_pred cHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 194 SLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 194 SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
|+|+.++++|+.+.... |++++++++|.
T Consensus 67 SLGc~~v~h~~~~~~~~--V~GalLVAppd 94 (181)
T COG3545 67 SLGCATVAHWAEHIQRQ--VAGALLVAPPD 94 (181)
T ss_pred cccHHHHHHHHHhhhhc--cceEEEecCCC
Confidence 99999999999987775 99988888765
No 136
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.29 E-value=1.4e-05 Score=70.39 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=78.0
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHH-HHHHHhCCceEEEEcCCCCCCCCCCCcCCCC-----------cCcHHHHHHHHHH
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHM-LLRARSKGWRVVVFNSRGCGDSPVTTPQFYS-----------ASFLGDMQEVVAH 178 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~-~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~-----------~~~~~Dl~~~l~~ 178 (262)
+.+|++|.++|.+.+.- +.-+.+ +..+.+.|+..+++..|=+|.-.-....... ...+.+.+.+++|
T Consensus 90 ~~rp~~IhLagTGDh~f-~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~W 168 (348)
T PF09752_consen 90 PYRPVCIHLAGTGDHGF-WRRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMGRATILESRALLHW 168 (348)
T ss_pred CCCceEEEecCCCccch-hhhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchhHHHHHHhHHHHHHHHHHHH
Confidence 46899999999865433 222344 7788888999999999988754311111111 2234577888899
Q ss_pred HHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 179 VGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 179 l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
+..+ +..++.+.|.||||.+|...+...|.. +..+-++++..
T Consensus 169 l~~~-G~~~~g~~G~SmGG~~A~laa~~~p~p--v~~vp~ls~~s 210 (348)
T PF09752_consen 169 LERE-GYGPLGLTGISMGGHMAALAASNWPRP--VALVPCLSWSS 210 (348)
T ss_pred HHhc-CCCceEEEEechhHhhHHhhhhcCCCc--eeEEEeecccC
Confidence 9988 777999999999999999999988886 66655555543
No 137
>COG0400 Predicted esterase [General function prediction only]
Probab=98.29 E-value=5.4e-06 Score=68.57 Aligned_cols=106 Identities=20% Similarity=0.270 Sum_probs=64.0
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCC-------CcCCCC-cCc---HHHHHHHHHHH
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVT-------TPQFYS-ASF---LGDMQEVVAHV 179 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~-------~~~~~~-~~~---~~Dl~~~l~~l 179 (262)
+..|+||++||++|+.. .++ .+.... .-.+.++.++ |-=.-... ....+. .+. +..+.++++.+
T Consensus 16 p~~~~iilLHG~Ggde~-~~~-~~~~~~-~P~~~~is~r--G~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~ 90 (207)
T COG0400 16 PAAPLLILLHGLGGDEL-DLV-PLPELI-LPNATLVSPR--GPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEEL 90 (207)
T ss_pred CCCcEEEEEecCCCChh-hhh-hhhhhc-CCCCeEEcCC--CCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHH
Confidence 46789999999986554 332 222222 2344444443 32111000 000111 111 22345555555
Q ss_pred HhhCCC--CcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 180 GSKYPK--AHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 180 ~~~~~~--~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
.+.++- ++++++|||-||++++.....++.. +++++++++-.
T Consensus 91 ~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~--~~~ail~~g~~ 134 (207)
T COG0400 91 AEEYGIDSSRIILIGFSQGANIALSLGLTLPGL--FAGAILFSGML 134 (207)
T ss_pred HHHhCCChhheEEEecChHHHHHHHHHHhCchh--hccchhcCCcC
Confidence 566543 6999999999999999999999987 99999888843
No 138
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=98.23 E-value=2.5e-05 Score=71.43 Aligned_cols=123 Identities=18% Similarity=0.175 Sum_probs=75.8
Q ss_pred CCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCc----eEEEEcCCCCCCCCCCCcCC-CCcCc
Q 024826 94 DGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGW----RVVVFNSRGCGDSPVTTPQF-YSASF 168 (262)
Q Consensus 94 g~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~----~vv~~d~rG~G~s~~~~~~~-~~~~~ 168 (262)
|....+..+.|.+-. +...|+|+++||-.-. ....+......+.+.|. .++.+|..+.. ... ... ....+
T Consensus 191 g~~r~v~VY~P~~y~-~~~~PvlyllDG~~w~-~~~~~~~~ld~li~~g~i~P~ivV~id~~~~~--~R~-~el~~~~~f 265 (411)
T PRK10439 191 GNSRRVWIYTTGDAA-PEERPLAILLDGQFWA-ESMPVWPALDSLTHRGQLPPAVYLLIDAIDTT--HRS-QELPCNADF 265 (411)
T ss_pred CCceEEEEEECCCCC-CCCCCEEEEEECHHhh-hcCCHHHHHHHHHHcCCCCceEEEEECCCCcc--ccc-ccCCchHHH
Confidence 455666655554322 3467999999995311 11113344556666663 35677753211 111 111 12334
Q ss_pred HHHH-HHHHHHHHhhCC----CCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 169 LGDM-QEVVAHVGSKYP----KAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 169 ~~Dl-~~~l~~l~~~~~----~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
.+.+ .+++-++.++|+ .++.+++|+||||..++..+..+|+. +.+++++|+.+
T Consensus 266 ~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~--Fg~v~s~Sgs~ 323 (411)
T PRK10439 266 WLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPER--FGCVLSQSGSF 323 (411)
T ss_pred HHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCccc--ccEEEEeccce
Confidence 4443 356666776654 23689999999999999999999998 99999999865
No 139
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.22 E-value=3e-06 Score=70.81 Aligned_cols=100 Identities=16% Similarity=0.154 Sum_probs=64.3
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHh----hCCCC
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGS----KYPKA 186 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~----~~~~~ 186 (262)
..++.++++|-.+|++. . .+.+...+. ..+.++.+.+||.|.--.... ..|+.++.+.+.. .+.++
T Consensus 5 ~~~~~L~cfP~AGGsa~-~-fr~W~~~lp-~~iel~avqlPGR~~r~~ep~-------~~di~~Lad~la~el~~~~~d~ 74 (244)
T COG3208 5 GARLRLFCFPHAGGSAS-L-FRSWSRRLP-ADIELLAVQLPGRGDRFGEPL-------LTDIESLADELANELLPPLLDA 74 (244)
T ss_pred CCCceEEEecCCCCCHH-H-HHHHHhhCC-chhheeeecCCCcccccCCcc-------cccHHHHHHHHHHHhccccCCC
Confidence 35677888887655542 3 466665443 369999999999985533222 2344444443332 24566
Q ss_pred cEEEEEEcHHHHHHHHHHhhcCCC-CCCceEEEEc
Q 024826 187 HLYAVGWSLGANILIRYLGHESHS-CPLSGAVSLC 220 (262)
Q Consensus 187 ~i~lvG~SlGg~ia~~~a~~~~~~-~~i~~~v~l~ 220 (262)
++.++||||||+++.+.|...... ....+..+.+
T Consensus 75 P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg 109 (244)
T COG3208 75 PFALFGHSMGAMLAFEVARRLERAGLPPRALFISG 109 (244)
T ss_pred CeeecccchhHHHHHHHHHHHHHcCCCcceEEEec
Confidence 999999999999999999876544 2344544443
No 140
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=98.21 E-value=5.5e-05 Score=70.26 Aligned_cols=136 Identities=16% Similarity=0.100 Sum_probs=85.9
Q ss_pred eEEEEcCC---CCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHH-----------HH------HhCCceE
Q 024826 86 RECIRTKD---DGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLL-----------RA------RSKGWRV 145 (262)
Q Consensus 86 r~~i~~~d---g~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~-----------~l------~~~G~~v 145 (262)
.-++...+ +..+..+++.... .+.+.|+||.++|..|.+.. ...+.+ .+ -.+-.++
T Consensus 49 sGy~~v~~~~~~~~lFyw~~~s~~--~~~~~Pl~lwlnGGPG~ss~--~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~~~ 124 (462)
T PTZ00472 49 SGYFDIPGNQTDKHYFYWAFGPRN--GNPEAPVLLWMTGGPGCSSM--FALLAENGPCLMNETTGDIYNNTYSWNNEAYV 124 (462)
T ss_pred eEEEEeCCCCCCceEEEEEEEcCC--CCCCCCEEEEECCCCcHHHH--HhhhccCCCeEEeCCCCceeECCcccccccCe
Confidence 44555543 4556666665442 35578999999999987742 111110 01 1122578
Q ss_pred EEEcC-CCCCCCCCCCcCC--CCcCcHHHHHHHHHHHHhhCCC---CcEEEEEEcHHHHHHHHHHhhcC--------CCC
Q 024826 146 VVFNS-RGCGDSPVTTPQF--YSASFLGDMQEVVAHVGSKYPK---AHLYAVGWSLGANILIRYLGHES--------HSC 211 (262)
Q Consensus 146 v~~d~-rG~G~s~~~~~~~--~~~~~~~Dl~~~l~~l~~~~~~---~~i~lvG~SlGg~ia~~~a~~~~--------~~~ 211 (262)
+.+|. +|+|.|-...... .....++|+.++++...+++|. .+++++|+|+||..+..++..-- ...
T Consensus 125 l~iDqP~G~G~S~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~i 204 (462)
T PTZ00472 125 IYVDQPAGVGFSYADKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYI 204 (462)
T ss_pred EEEeCCCCcCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCcee
Confidence 88996 5888885433222 2255688999999887777764 79999999999999887776531 112
Q ss_pred CCceEEEEcCCcCh
Q 024826 212 PLSGAVSLCNPFNL 225 (262)
Q Consensus 212 ~i~~~v~l~~p~~~ 225 (262)
.++++++-.+..|.
T Consensus 205 nLkGi~IGNg~~dp 218 (462)
T PTZ00472 205 NLAGLAVGNGLTDP 218 (462)
T ss_pred eeEEEEEeccccCh
Confidence 47775555554443
No 141
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=98.19 E-value=4.6e-06 Score=69.72 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=53.0
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHh--CCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHH-HHHHHHhhCC-CCc
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARS--KGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQE-VVAHVGSKYP-KAH 187 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~--~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~-~l~~l~~~~~-~~~ 187 (262)
+.-+||++||+.|+..+ +..+...+.. ..+.-..+...+.......+ ........+.+.+ +.+.+...-. ..+
T Consensus 3 ~~hLvV~vHGL~G~~~d--~~~~~~~l~~~~~~~~~~~i~~~~~~~n~~~T-~~gI~~~g~rL~~eI~~~~~~~~~~~~~ 79 (217)
T PF05057_consen 3 PVHLVVFVHGLWGNPAD--MRYLKNHLEKIPEDLPNARIVVLGYSNNEFKT-FDGIDVCGERLAEEILEHIKDYESKIRK 79 (217)
T ss_pred CCEEEEEeCCCCCCHHH--HHHHHHHHHHhhhhcchhhhhhhccccccccc-chhhHHHHHHHHHHHHHhcccccccccc
Confidence 45689999999998654 2344333433 12221122222221111111 1111222333332 2222222211 248
Q ss_pred EEEEEEcHHHHHHHHHHhhcCCC----C------CCceEEEEcCCcC
Q 024826 188 LYAVGWSLGANILIRYLGHESHS----C------PLSGAVSLCNPFN 224 (262)
Q Consensus 188 i~lvG~SlGg~ia~~~a~~~~~~----~------~i~~~v~l~~p~~ 224 (262)
|.++||||||.++-.++....+. . .....+.+++|.-
T Consensus 80 IsfIgHSLGGli~r~al~~~~~~~~~~~~~~~~~~~~~fitlatPH~ 126 (217)
T PF05057_consen 80 ISFIGHSLGGLIARYALGLLHDKPQYFPGFFQKIKPHNFITLATPHL 126 (217)
T ss_pred ceEEEecccHHHHHHHHHHhhhccccccccccceeeeeEEEeCCCCC
Confidence 99999999999886655532221 0 2335566777764
No 142
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.18 E-value=6e-06 Score=77.58 Aligned_cols=123 Identities=20% Similarity=0.107 Sum_probs=74.7
Q ss_pred eEEEEeecCCCCCCCCCCcEEEEECCCC---CCCC-cHHHHHHHHHHHhCCceEEEEcCC----CCCCCCCCCcCCCCcC
Q 024826 96 SVALDWISGDHQLLPPDSPVLILMPGLT---GGSE-DSYVRHMLLRARSKGWRVVVFNSR----GCGDSPVTTPQFYSAS 167 (262)
Q Consensus 96 ~i~l~~~~~~~~~~~~~~p~vv~lHG~~---g~~~-~~y~~~~~~~l~~~G~~vv~~d~r----G~G~s~~~~~~~~~~~ 167 (262)
-+.++.+.|.........|++|++||.+ |++. ..| .-...+.+.+.-||.+||| |+-.++....... .-
T Consensus 108 CL~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~--~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~~g-N~ 184 (535)
T PF00135_consen 108 CLYLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPY--DGASLAASKDVIVVTINYRLGAFGFLSLGDLDAPSG-NY 184 (535)
T ss_dssp --EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGG--HTHHHHHHHTSEEEEE----HHHHH-BSSSTTSHBS-TH
T ss_pred HHHHhhhhccccccccccceEEEeecccccCCCcccccc--cccccccCCCEEEEEecccccccccccccccccCch-hh
Confidence 4777776665433333679999999955 3331 222 2234566789999999999 4432221111101 12
Q ss_pred cHHHHHHHHHHHHhh---CC--CCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcC
Q 024826 168 FLGDMQEVVAHVGSK---YP--KAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCN 221 (262)
Q Consensus 168 ~~~Dl~~~l~~l~~~---~~--~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~ 221 (262)
-..|.+.+++|+++. |+ ..+|.++|+|.||..+...+.....+.-++++|+.|+
T Consensus 185 Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG 243 (535)
T PF00135_consen 185 GLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSG 243 (535)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES-
T ss_pred hhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeecccccccccccccccc
Confidence 256889999999874 43 2389999999999988877776443456999999998
No 143
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=98.18 E-value=8.8e-05 Score=65.34 Aligned_cols=116 Identities=13% Similarity=0.194 Sum_probs=78.5
Q ss_pred CCCcEEEEECCCCCCCCc-HHHHHHHHHHHhCCceEEEEcCCCC--CCCCCC--------C---cCCCC-----------
Q 024826 111 PDSPVLILMPGLTGGSED-SYVRHMLLRARSKGWRVVVFNSRGC--GDSPVT--------T---PQFYS----------- 165 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~-~y~~~~~~~l~~~G~~vv~~d~rG~--G~s~~~--------~---~~~~~----------- 165 (262)
..++.||++||.+.+.+. ..+..+-..|.++||.++.+..+.- ...+.. . .....
T Consensus 85 ~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 164 (310)
T PF12048_consen 85 KPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQ 164 (310)
T ss_pred CCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCCCCCCcCCCCCCCcccccc
Confidence 467899999999877653 4556677788999999999998872 111100 0 00000
Q ss_pred ---------cCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHHH
Q 024826 166 ---------ASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVIA 228 (262)
Q Consensus 166 ---------~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~ 228 (262)
.....-+.++++++.. ++..+++++||..|+.+++.|+.+.+.. .++++|++++.+.....
T Consensus 165 ~~~~~~~~~~~~~ari~Aa~~~~~~-~~~~~ivlIg~G~gA~~~~~~la~~~~~-~~daLV~I~a~~p~~~~ 234 (310)
T PF12048_consen 165 EAEAREAYEERLFARIEAAIAFAQQ-QGGKNIVLIGHGTGAGWAARYLAEKPPP-MPDALVLINAYWPQPDR 234 (310)
T ss_pred HhHHhHHHHHHHHHHHHHHHHHHHh-cCCceEEEEEeChhHHHHHHHHhcCCCc-ccCeEEEEeCCCCcchh
Confidence 1112234555565554 3555699999999999999999998753 38899999986655444
No 144
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=98.17 E-value=8.9e-06 Score=76.31 Aligned_cols=143 Identities=16% Similarity=0.204 Sum_probs=105.2
Q ss_pred ceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCC---c
Q 024826 85 KRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTT---P 161 (262)
Q Consensus 85 ~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~---~ 161 (262)
+|.+++..||..|.+..+-.++......+|++|...|--|.+....+....--|.++|+--.+..-||-|.-.... .
T Consensus 420 ~riwa~a~dgv~VPVSLvyrkd~~~~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~G 499 (682)
T COG1770 420 RRIWATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDG 499 (682)
T ss_pred EEEEEEcCCCcEeeEEEEEecccCCCCCCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhh
Confidence 4566666899888887665444445667899999999888777665554445678999988888999987554321 1
Q ss_pred CC-CCcCcHHHHHHHHHHHHhh-CC-CCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHHHH
Q 024826 162 QF-YSASFLGDMQEVVAHVGSK-YP-KAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVIAD 229 (262)
Q Consensus 162 ~~-~~~~~~~Dl~~~l~~l~~~-~~-~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~~ 229 (262)
.. .-..-.+|..++.+++.+. +. ...|+++|-|.||+++...+.+.|+. ++++|+-.|-.|...++
T Consensus 500 K~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~l--f~~iiA~VPFVDvltTM 568 (682)
T COG1770 500 KLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDL--FAGIIAQVPFVDVLTTM 568 (682)
T ss_pred hhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhh--hhheeecCCccchhhhh
Confidence 11 1123357999999998865 33 33799999999999999999999998 99988888877765543
No 145
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.14 E-value=7e-06 Score=70.69 Aligned_cols=107 Identities=16% Similarity=0.174 Sum_probs=71.6
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCC------CCCcCCCC------------c------
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSP------VTTPQFYS------------A------ 166 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~------~~~~~~~~------------~------ 166 (262)
++-|+||+-||++|. ..-| ..++-.++.+||-|.++++|...-+- ........ +
T Consensus 116 ~k~PvvvFSHGLggs-Rt~Y-Sa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~ir 193 (399)
T KOG3847|consen 116 DKYPVVVFSHGLGGS-RTLY-SAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFHIR 193 (399)
T ss_pred CCccEEEEecccccc-hhhH-HHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEEee
Confidence 467999999999664 4455 77888999999999999999875321 00000000 0
Q ss_pred -----CcHHHHHHHHHHHHhh-----------------------CCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEE
Q 024826 167 -----SFLGDMQEVVAHVGSK-----------------------YPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVS 218 (262)
Q Consensus 167 -----~~~~Dl~~~l~~l~~~-----------------------~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~ 218 (262)
..++++..+++-+... ...+++.++|||+||..+...++.+.+ ++|+|+
T Consensus 194 Neqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t~---FrcaI~ 270 (399)
T KOG3847|consen 194 NEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHTD---FRCAIA 270 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccccc---eeeeee
Confidence 0123444444444321 112378999999999999888887655 899999
Q ss_pred EcCC
Q 024826 219 LCNP 222 (262)
Q Consensus 219 l~~p 222 (262)
+...
T Consensus 271 lD~W 274 (399)
T KOG3847|consen 271 LDAW 274 (399)
T ss_pred eeee
Confidence 9983
No 146
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.12 E-value=7.9e-06 Score=74.55 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=79.6
Q ss_pred EEEEeecCCCCCCCCCCcEEEEECCCC---CCCCcHHHHHHHHHHHhCC-ceEEEEcCC----CCC-CCCCCCcCCCC-c
Q 024826 97 VALDWISGDHQLLPPDSPVLILMPGLT---GGSEDSYVRHMLLRARSKG-WRVVVFNSR----GCG-DSPVTTPQFYS-A 166 (262)
Q Consensus 97 i~l~~~~~~~~~~~~~~p~vv~lHG~~---g~~~~~y~~~~~~~l~~~G-~~vv~~d~r----G~G-~s~~~~~~~~~-~ 166 (262)
+.+....|+ ....+.|+||++||.+ |+..+.+.. -..|+++| +-||.+||| |+- .+...+.+.+. .
T Consensus 80 L~LNIwaP~--~~a~~~PVmV~IHGG~y~~Gs~s~~~yd--gs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~~~~n 155 (491)
T COG2272 80 LYLNIWAPE--VPAEKLPVMVYIHGGGYIMGSGSEPLYD--GSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASN 155 (491)
T ss_pred eeEEeeccC--CCCCCCcEEEEEeccccccCCCcccccC--hHHHHhcCCEEEEEeCcccccceeeehhhcccccccccc
Confidence 566655444 2334679999999954 332222212 23567777 999999999 321 12222122221 2
Q ss_pred CcHHHHHHHHHHHHhh---CC--CCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 167 SFLGDMQEVVAHVGSK---YP--KAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 167 ~~~~Dl~~~l~~l~~~---~~--~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
--..|...+++|+++. |+ ...|.++|+|.||+.++.+++--..+.-++++|+.|++..
T Consensus 156 ~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 156 LGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 3467889999999864 43 3479999999999999988875332335778888888775
No 147
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=98.11 E-value=3.3e-05 Score=66.41 Aligned_cols=133 Identities=17% Similarity=0.213 Sum_probs=77.2
Q ss_pred EEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHH----HHHHhCCceEEEEcCCCCCCCCCCCcC
Q 024826 87 ECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHML----LRARSKGWRVVVFNSRGCGDSPVTTPQ 162 (262)
Q Consensus 87 ~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~----~~l~~~G~~vv~~d~rG~G~s~~~~~~ 162 (262)
+.++++-| .+.+...... ..++|++|-.|-++-+.. +.+..+. -....+.|-++=+|.||+..-....+.
T Consensus 2 h~v~t~~G-~v~V~v~G~~----~~~kp~ilT~HDvGlNh~-scF~~ff~~~~m~~i~~~f~i~Hi~aPGqe~ga~~~p~ 75 (283)
T PF03096_consen 2 HDVETPYG-SVHVTVQGDP----KGNKPAILTYHDVGLNHK-SCFQGFFNFEDMQEILQNFCIYHIDAPGQEEGAATLPE 75 (283)
T ss_dssp EEEEETTE-EEEEEEESS------TTS-EEEEE--TT--HH-HHCHHHHCSHHHHHHHTTSEEEEEE-TTTSTT-----T
T ss_pred ceeccCce-EEEEEEEecC----CCCCceEEEeccccccch-HHHHHHhcchhHHHHhhceEEEEEeCCCCCCCcccccc
Confidence 45666655 4555443322 126999999997753322 2222221 223457899999999999654333333
Q ss_pred CCC----cCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHHHHHH
Q 024826 163 FYS----ASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVIADQD 231 (262)
Q Consensus 163 ~~~----~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~~~~ 231 (262)
.+. .+.++++.+++++...+ .++.+|.-.||+|+++||..+|++ +.++|++++......-.++
T Consensus 76 ~y~yPsmd~LAe~l~~Vl~~f~lk----~vIg~GvGAGAnIL~rfAl~~p~~--V~GLiLvn~~~~~~gw~Ew 142 (283)
T PF03096_consen 76 GYQYPSMDQLAEMLPEVLDHFGLK----SVIGFGVGAGANILARFALKHPER--VLGLILVNPTCTAAGWMEW 142 (283)
T ss_dssp T-----HHHHHCTHHHHHHHHT-------EEEEEETHHHHHHHHHHHHSGGG--EEEEEEES---S---HHHH
T ss_pred cccccCHHHHHHHHHHHHHhCCcc----EEEEEeeccchhhhhhccccCccc--eeEEEEEecCCCCccHHHH
Confidence 322 55566777777777766 899999999999999999999999 9999999886554333333
No 148
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.11 E-value=4.8e-05 Score=66.99 Aligned_cols=122 Identities=14% Similarity=0.186 Sum_probs=82.7
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCc--eEEEEcCCCCCCCCCCC-cCCCCcCcHHHHHHHHHHHHhhCCCCc
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHMLLRARSKGW--RVVVFNSRGCGDSPVTT-PQFYSASFLGDMQEVVAHVGSKYPKAH 187 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~--~vv~~d~rG~G~s~~~~-~~~~~~~~~~Dl~~~l~~l~~~~~~~~ 187 (262)
.++-++|++||+..+-.+. +...++-....|+ .+++|-+|..|.--.-. .+..+..-..++..++.++.+..+..+
T Consensus 114 ~~k~vlvFvHGfNntf~da-v~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~~~~ 192 (377)
T COG4782 114 SAKTVLVFVHGFNNTFEDA-VYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYDRESTNYSRPALERLLRYLATDKPVKR 192 (377)
T ss_pred CCCeEEEEEcccCCchhHH-HHHHHHHHhhcCCCcceEEEEcCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCCCCce
Confidence 5788999999996554432 3455555556665 56788888776432211 111112224578889999998877889
Q ss_pred EEEEEEcHHHHHHHHHHhhcCCC------CCCceEEEEcCCcChHHHHHHHH
Q 024826 188 LYAVGWSLGANILIRYLGHESHS------CPLSGAVSLCNPFNLVIADQDFR 233 (262)
Q Consensus 188 i~lvG~SlGg~ia~~~a~~~~~~------~~i~~~v~l~~p~~~~~~~~~~~ 233 (262)
|++++||||..++++.+.+...+ .+|+-+|+-+|-.|.......+.
T Consensus 193 I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~DVF~~Q~~ 244 (377)
T COG4782 193 IYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDVDVFSSQIA 244 (377)
T ss_pred EEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCChhhHHHHHH
Confidence 99999999999999888764322 24777888888777665554443
No 149
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.00014 Score=60.93 Aligned_cols=111 Identities=19% Similarity=0.291 Sum_probs=80.0
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHHHHHHHhC-C--ceEEEEcCCCCCCCCCCCc---CCCC---cCcHHHHHHHHHHHHh
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHMLLRARSK-G--WRVVVFNSRGCGDSPVTTP---QFYS---ASFLGDMQEVVAHVGS 181 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~-G--~~vv~~d~rG~G~s~~~~~---~~~~---~~~~~Dl~~~l~~l~~ 181 (262)
.+++.+++++|..|.. .|...++..+.+. + ..++.+-.-||..-+.+.. ...+ -...+.++.-++++++
T Consensus 27 ~~~~li~~IpGNPG~~--gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKlaFik~ 104 (301)
T KOG3975|consen 27 EDKPLIVWIPGNPGLL--GFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKLAFIKE 104 (301)
T ss_pred CCceEEEEecCCCCch--hHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccccccchhhHHHHHHHHHHH
Confidence 4789999999999965 4457777777543 2 5588888888876552211 1111 2345667777788887
Q ss_pred hCCC-CcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 182 KYPK-AHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 182 ~~~~-~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
..|. .+++++|||-|+.+++..+........|.+++++-|..
T Consensus 105 ~~Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFPTI 147 (301)
T KOG3975|consen 105 YVPKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFPTI 147 (301)
T ss_pred hCCCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecchH
Confidence 6654 48999999999999999998766666788888887644
No 150
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=5e-06 Score=77.57 Aligned_cols=143 Identities=17% Similarity=0.178 Sum_probs=103.8
Q ss_pred CcceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCC--
Q 024826 83 KLKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTT-- 160 (262)
Q Consensus 83 ~~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~-- 160 (262)
...|..+...||..+.+..+..+..+....+|.+|..+|..|-+-..+++.--.-+.+.|+..+..|.||-|.-....
T Consensus 440 ~~~r~~~~SkDGt~VPM~Iv~kk~~k~dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk 519 (712)
T KOG2237|consen 440 VVERIEVSSKDGTKVPMFIVYKKDIKLDGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHK 519 (712)
T ss_pred EEEEEEEecCCCCccceEEEEechhhhcCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhh
Confidence 345777888899999888766544445557899999998777555443332222356799999999999998654322
Q ss_pred -cCCCC-cCcHHHHHHHHHHHHhhC--CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHH
Q 024826 161 -PQFYS-ASFLGDMQEVVAHVGSKY--PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVI 227 (262)
Q Consensus 161 -~~~~~-~~~~~Dl~~~l~~l~~~~--~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~ 227 (262)
..... ..-.+|..+..+++.+.. ...++.+.|.|.||.++.....+.|+. +.++|+-.+-+|+..
T Consensus 520 ~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdL--F~avia~VpfmDvL~ 588 (712)
T KOG2237|consen 520 DGRLAKKQNSFDDFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDL--FGAVIAKVPFMDVLN 588 (712)
T ss_pred ccchhhhcccHHHHHHHHHHHHHcCCCCccceeEecccCccchhHHHhccCchH--hhhhhhcCcceehhh
Confidence 11111 344689999999998752 234899999999999999999999998 888777777777543
No 151
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=98.07 E-value=4e-05 Score=70.67 Aligned_cols=111 Identities=22% Similarity=0.313 Sum_probs=70.9
Q ss_pred CCcEEEEECCCCCCCCcHHHH-HHHHHH-HhCCceEEEEcCCCCCCCCCCCc----C---CCCcCcHHHHHHHHHHHHhh
Q 024826 112 DSPVLILMPGLTGGSEDSYVR-HMLLRA-RSKGWRVVVFNSRGCGDSPVTTP----Q---FYSASFLGDMQEVVAHVGSK 182 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~-~~~~~l-~~~G~~vv~~d~rG~G~s~~~~~----~---~~~~~~~~Dl~~~l~~l~~~ 182 (262)
+.|++|++ |..+.....++. .+...+ .+.|-.++++.+|-+|.|.-... . ++......|+..++++++.+
T Consensus 28 ~gpifl~~-ggE~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~ 106 (434)
T PF05577_consen 28 GGPIFLYI-GGEGPIEPFWINNGFMWELAKEFGALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKK 106 (434)
T ss_dssp TSEEEEEE---SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEE-CCCCccchhhhcCChHHHHHHHcCCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHh
Confidence 46766666 544443322322 233334 45588999999999999852211 1 12244477999999999976
Q ss_pred C---CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcCh
Q 024826 183 Y---PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNL 225 (262)
Q Consensus 183 ~---~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~ 225 (262)
+ ++.|++++|-|+||++++++-.++|+. +.++++-|+|+..
T Consensus 107 ~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~--~~ga~ASSapv~a 150 (434)
T PF05577_consen 107 YNTAPNSPWIVFGGSYGGALAAWFRLKYPHL--FDGAWASSAPVQA 150 (434)
T ss_dssp TTTGCC--EEEEEETHHHHHHHHHHHH-TTT---SEEEEET--CCH
T ss_pred hcCCCCCCEEEECCcchhHHHHHHHhhCCCe--eEEEEeccceeee
Confidence 5 456999999999999999999999998 9999999998864
No 152
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.06 E-value=0.0001 Score=65.92 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=73.6
Q ss_pred CCCCcEEEEECCCCCCC--CcHHHHHHH--HHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCC
Q 024826 110 PPDSPVLILMPGLTGGS--EDSYVRHML--LRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPK 185 (262)
Q Consensus 110 ~~~~p~vv~lHG~~g~~--~~~y~~~~~--~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~ 185 (262)
++..|+||++||.+-.. ....+..+. ..+.+ ...++++||.-...-+ ..........++.+..+++.+..+.
T Consensus 119 pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~-~~SILvLDYsLt~~~~---~~~~yPtQL~qlv~~Y~~Lv~~~G~ 194 (374)
T PF10340_consen 119 PKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP-EVSILVLDYSLTSSDE---HGHKYPTQLRQLVATYDYLVESEGN 194 (374)
T ss_pred CCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC-CCeEEEEecccccccc---CCCcCchHHHHHHHHHHHHHhccCC
Confidence 34569999999975211 112222221 22233 5689999987553000 1112245567888888999866678
Q ss_pred CcEEEEEEcHHHHHHHHHHhhcCC---CCCCceEEEEcCCcChH
Q 024826 186 AHLYAVGWSLGANILIRYLGHESH---SCPLSGAVSLCNPFNLV 226 (262)
Q Consensus 186 ~~i~lvG~SlGg~ia~~~a~~~~~---~~~i~~~v~l~~p~~~~ 226 (262)
+.|.++|-|.||++++.++....+ ...-+++|++||..++.
T Consensus 195 ~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 195 KNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred CeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 899999999999999987754322 12357889999987765
No 153
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.06 E-value=1.9e-05 Score=81.97 Aligned_cols=99 Identities=11% Similarity=0.069 Sum_probs=69.3
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEE
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVG 192 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG 192 (262)
.+.++++||++|+.. .| ..++..+ ..++.|+.++.+|++.... .......+++|+.+.++.+ .+..+++++|
T Consensus 1068 ~~~l~~lh~~~g~~~-~~-~~l~~~l-~~~~~v~~~~~~g~~~~~~--~~~~l~~la~~~~~~i~~~---~~~~p~~l~G 1139 (1296)
T PRK10252 1068 GPTLFCFHPASGFAW-QF-SVLSRYL-DPQWSIYGIQSPRPDGPMQ--TATSLDEVCEAHLATLLEQ---QPHGPYHLLG 1139 (1296)
T ss_pred CCCeEEecCCCCchH-HH-HHHHHhc-CCCCcEEEEECCCCCCCCC--CCCCHHHHHHHHHHHHHhh---CCCCCEEEEE
Confidence 467999999987654 33 5666555 4679999999999985521 2222345555555555443 3445899999
Q ss_pred EcHHHHHHHHHHhhc---CCCCCCceEEEEcC
Q 024826 193 WSLGANILIRYLGHE---SHSCPLSGAVSLCN 221 (262)
Q Consensus 193 ~SlGg~ia~~~a~~~---~~~~~i~~~v~l~~ 221 (262)
||+||.++..++.+. +++ +..++++++
T Consensus 1140 ~S~Gg~vA~e~A~~l~~~~~~--v~~l~l~~~ 1169 (1296)
T PRK10252 1140 YSLGGTLAQGIAARLRARGEE--VAFLGLLDT 1169 (1296)
T ss_pred echhhHHHHHHHHHHHHcCCc--eeEEEEecC
Confidence 999999999999863 554 777776664
No 154
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=98.05 E-value=1.3e-05 Score=71.86 Aligned_cols=112 Identities=14% Similarity=0.179 Sum_probs=85.1
Q ss_pred CCcEEEEECCCCCCCCc---HHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcH-HHHHHHHHHHHhhCCCCc
Q 024826 112 DSPVLILMPGLTGGSED---SYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFL-GDMQEVVAHVGSKYPKAH 187 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~---~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~-~Dl~~~l~~l~~~~~~~~ 187 (262)
.+++++++|-+.....- .--+.++..+.++|..|+++++++=..+.. +...+++. +++.++++.+++..+..+
T Consensus 106 ~~~PlLiVpP~iNk~yi~Dl~~~~s~V~~l~~~g~~vfvIsw~nPd~~~~---~~~~edYi~e~l~~aid~v~~itg~~~ 182 (445)
T COG3243 106 LKRPLLIVPPWINKFYILDLSPEKSLVRWLLEQGLDVFVISWRNPDASLA---AKNLEDYILEGLSEAIDTVKDITGQKD 182 (445)
T ss_pred CCCceEeeccccCceeEEeCCCCccHHHHHHHcCCceEEEeccCchHhhh---hccHHHHHHHHHHHHHHHHHHHhCccc
Confidence 45668888876532110 001467888999999999999986554432 33335555 778889999988878789
Q ss_pred EEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHH
Q 024826 188 LYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVI 227 (262)
Q Consensus 188 i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~ 227 (262)
|.++|+|.||+++..+++.++.+ +|+.++.+.+++|+..
T Consensus 183 InliGyCvGGtl~~~ala~~~~k-~I~S~T~lts~~DF~~ 221 (445)
T COG3243 183 INLIGYCVGGTLLAAALALMAAK-RIKSLTLLTSPVDFSH 221 (445)
T ss_pred cceeeEecchHHHHHHHHhhhhc-ccccceeeecchhhcc
Confidence 99999999999999999988876 6999999999998654
No 155
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.01 E-value=2.2e-05 Score=70.02 Aligned_cols=110 Identities=22% Similarity=0.243 Sum_probs=77.6
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCce---EEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEE
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWR---VVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLY 189 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~---vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~ 189 (262)
.-+++++||+.++.. . +..+...+...|+. +..++.++. . ..........-+.+.++.+....+..++.
T Consensus 59 ~~pivlVhG~~~~~~-~-~~~~~~~~~~~g~~~~~~~~~~~~~~---~---~~~~~~~~~~ql~~~V~~~l~~~ga~~v~ 130 (336)
T COG1075 59 KEPIVLVHGLGGGYG-N-FLPLDYRLAILGWLTNGVYAFELSGG---D---GTYSLAVRGEQLFAYVDEVLAKTGAKKVN 130 (336)
T ss_pred CceEEEEccCcCCcc-h-hhhhhhhhcchHHHhccccccccccc---C---CCccccccHHHHHHHHHHHHhhcCCCceE
Confidence 446899999854443 2 35555567777877 777777655 1 11112344556667777777676777999
Q ss_pred EEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHHHHH
Q 024826 190 AVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVIADQ 230 (262)
Q Consensus 190 lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~~~ 230 (262)
++|||+||.++..|+...+....|+.++.+++|-......+
T Consensus 131 LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~~Gt~~~~ 171 (336)
T COG1075 131 LIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPHHGTELAD 171 (336)
T ss_pred EEeecccchhhHHHHhhcCccceEEEEEEeccCCCCchhhh
Confidence 99999999999999988884444999999999877555443
No 156
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=98.01 E-value=0.00012 Score=63.82 Aligned_cols=98 Identities=19% Similarity=0.195 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhC------CCCcEEEEEEcHHHHHHHHH
Q 024826 130 YVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKY------PKAHLYAVGWSLGANILIRY 203 (262)
Q Consensus 130 y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~------~~~~i~lvG~SlGg~ia~~~ 203 (262)
+-..++..+.++||.|++.||.|.|. +.. .......++.+.++..++.. .+.++.++|||-||.-+...
T Consensus 14 ~e~~~l~~~L~~GyaVv~pDY~Glg~-~y~----~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~A 88 (290)
T PF03583_consen 14 YEAPFLAAWLARGYAVVAPDYEGLGT-PYL----NGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWA 88 (290)
T ss_pred hHHHHHHHHHHCCCEEEecCCCCCCC-ccc----CcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHH
Confidence 34456677789999999999999986 211 11222333444444433221 24589999999999887655
Q ss_pred HhhcC---CCCC--CceEEEEcCCcChHHHHHHH
Q 024826 204 LGHES---HSCP--LSGAVSLCNPFNLVIADQDF 232 (262)
Q Consensus 204 a~~~~---~~~~--i~~~v~l~~p~~~~~~~~~~ 232 (262)
+...+ .+-. |.++++.++|.|+....+.+
T Consensus 89 A~l~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~ 122 (290)
T PF03583_consen 89 AELAPSYAPELNRDLVGAAAGGPPADLAALLRAL 122 (290)
T ss_pred HHHhHHhCcccccceeEEeccCCccCHHHHHhcc
Confidence 53322 2224 88989999999987765544
No 157
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=97.95 E-value=3.4e-05 Score=63.59 Aligned_cols=108 Identities=20% Similarity=0.274 Sum_probs=77.6
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcC-CCCCCCCCCCcC--------CCCcCcHHHHHHHHHHHHhh
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNS-RGCGDSPVTTPQ--------FYSASFLGDMQEVVAHVGSK 182 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~-rG~G~s~~~~~~--------~~~~~~~~Dl~~~l~~l~~~ 182 (262)
++..||++--+.|.+.. -.+..+..++..||.|+++|+ +|--.++..... ........|+..++++++.+
T Consensus 38 ~~~~li~i~DvfG~~~~-n~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~ 116 (242)
T KOG3043|consen 38 SKKVLIVIQDVFGFQFP-NTREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNH 116 (242)
T ss_pred CCeEEEEEEeeeccccH-HHHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHc
Confidence 34567777766676653 357888889999999999995 553223221110 11133457999999999988
Q ss_pred CCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 183 YPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 183 ~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
++..+|.++|+++||.++..+....++ +.++++.=+.+
T Consensus 117 g~~kkIGv~GfCwGak~vv~~~~~~~~---f~a~v~~hps~ 154 (242)
T KOG3043|consen 117 GDSKKIGVVGFCWGAKVVVTLSAKDPE---FDAGVSFHPSF 154 (242)
T ss_pred CCcceeeEEEEeecceEEEEeeccchh---heeeeEecCCc
Confidence 778899999999999999999988874 66666665533
No 158
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.0003 Score=57.66 Aligned_cols=140 Identities=17% Similarity=0.220 Sum_probs=86.3
Q ss_pred cceEEEEcCC--CCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHH--------------HHHHHHhCCceEEE
Q 024826 84 LKRECIRTKD--DGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRH--------------MLLRARSKGWRVVV 147 (262)
Q Consensus 84 ~~r~~i~~~d--g~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~--------------~~~~l~~~G~~vv~ 147 (262)
.+|..++.+. ......-|..++ .......++|++||-+--....|.+. ++....+.||.|++
T Consensus 72 Lkr~~ip~d~~e~E~~SFiF~s~~--~lt~~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv 149 (297)
T KOG3967|consen 72 LKRVSIPVDATESEPKSFIFMSED--ALTNPQKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIV 149 (297)
T ss_pred ceeEeecCCCCCCCCcceEEEChh--HhcCccceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEE
Confidence 4555555432 122333333333 23345678999999762222233332 35667788999999
Q ss_pred EcCCCCCC--CCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcCh
Q 024826 148 FNSRGCGD--SPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNL 225 (262)
Q Consensus 148 ~d~rG~G~--s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~ 225 (262)
.|...+-. .....+..+...-+.-+..+-..+...-....++++.||.||...+.++.++|+...|.++++-.+++..
T Consensus 150 ~N~N~~~kfye~k~np~kyirt~veh~~yvw~~~v~pa~~~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialTDs~~~~ 229 (297)
T KOG3967|consen 150 LNPNRERKFYEKKRNPQKYIRTPVEHAKYVWKNIVLPAKAESVFVVAHSYGGSLTLDLVERFPDDESVFAIALTDSAMGS 229 (297)
T ss_pred eCCchhhhhhhcccCcchhccchHHHHHHHHHHHhcccCcceEEEEEeccCChhHHHHHHhcCCccceEEEEeecccccC
Confidence 99764321 1223345555544555555555554433344799999999999999999999987778887777776543
No 159
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=97.76 E-value=3.5e-05 Score=70.11 Aligned_cols=87 Identities=13% Similarity=0.261 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhCCceE----E-E-EcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHH
Q 024826 130 YVRHMLLRARSKGWRV----V-V-FNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRY 203 (262)
Q Consensus 130 y~~~~~~~l~~~G~~v----v-~-~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~ 203 (262)
++..+++.|.+.||.. . + +|+|-. . . ...++...+.+.|+.+.+.. +.+++++||||||.++..+
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~---~----~-~~~~~~~~lk~~ie~~~~~~-~~kv~li~HSmGgl~~~~f 136 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLS---P----A-ERDEYFTKLKQLIEEAYKKN-GKKVVLIAHSMGGLVARYF 136 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhc---h----h-hHHHHHHHHHHHHHHHHHhc-CCcEEEEEeCCCchHHHHH
Confidence 5688899998888853 2 2 566622 1 1 22466778888888887766 7799999999999999999
Q ss_pred HhhcCCC----CCCceEEEEcCCcCh
Q 024826 204 LGHESHS----CPLSGAVSLCNPFNL 225 (262)
Q Consensus 204 a~~~~~~----~~i~~~v~l~~p~~~ 225 (262)
+...+.. ..|++.|.+++|+.-
T Consensus 137 l~~~~~~~W~~~~i~~~i~i~~p~~G 162 (389)
T PF02450_consen 137 LQWMPQEEWKDKYIKRFISIGTPFGG 162 (389)
T ss_pred HHhccchhhHHhhhhEEEEeCCCCCC
Confidence 9887543 369999999999973
No 160
>PRK04940 hypothetical protein; Provisional
Probab=97.75 E-value=0.00038 Score=56.14 Aligned_cols=38 Identities=13% Similarity=-0.129 Sum_probs=31.5
Q ss_pred CcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHHH
Q 024826 186 AHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVIA 228 (262)
Q Consensus 186 ~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~ 228 (262)
.++.++|.||||..|.+++.+++- + +|++.|.+.....
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~----~-aVLiNPAv~P~~~ 97 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGI----R-QVIFNPNLFPEEN 97 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCC----C-EEEECCCCChHHH
Confidence 379999999999999999998864 3 6999998876543
No 161
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.75 E-value=0.00017 Score=59.46 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=80.2
Q ss_pred CCcEEEEECCCCCCC-CcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEE
Q 024826 112 DSPVLILMPGLTGGS-EDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYA 190 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~-~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~l 190 (262)
.+-.||++-|++.+- ...|+..++.++.+.+|..+-+..+.+- +. .......+.++|+..+++++....-.+.|++
T Consensus 35 ~~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy-~G--~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL 111 (299)
T KOG4840|consen 35 ESVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSY-NG--YGTFSLKDDVEDLKCLLEHIQLCGFSTDVVL 111 (299)
T ss_pred eEEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccc-cc--cccccccccHHHHHHHHHHhhccCcccceEE
Confidence 356688888886433 4578888999999999999988876331 10 1112225678999999999886544458999
Q ss_pred EEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcCh
Q 024826 191 VGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNL 225 (262)
Q Consensus 191 vG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~ 225 (262)
+|||.|..-.+.|+...-....|.++|+.+|.-|-
T Consensus 112 ~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDr 146 (299)
T KOG4840|consen 112 VGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDR 146 (299)
T ss_pred EecCccchHHHHHHHhccchHHHHHHHHhCccchh
Confidence 99999999999999443222348888888777664
No 162
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.00023 Score=68.15 Aligned_cols=108 Identities=15% Similarity=0.194 Sum_probs=64.0
Q ss_pred CCCCcEEEEECCCCCCCCcHHHHHHHHHHHh----------------CCceEEEEcCCCCCCCCCCCc-CCCCcCcHHHH
Q 024826 110 PPDSPVLILMPGLTGGSEDSYVRHMLLRARS----------------KGWRVVVFNSRGCGDSPVTTP-QFYSASFLGDM 172 (262)
Q Consensus 110 ~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~----------------~G~~vv~~d~rG~G~s~~~~~-~~~~~~~~~Dl 172 (262)
..+.-+|++++|.+|+-.. ++.++..... ..|+.+++|+-+ +.+.- .....+.++-+
T Consensus 86 elsGIPVLFIPGNAGSyKQ--vRSiAS~a~n~y~~~~~e~t~~~d~~~~~DFFaVDFnE----e~tAm~G~~l~dQtEYV 159 (973)
T KOG3724|consen 86 ELSGIPVLFIPGNAGSYKQ--VRSIASVAQNAYQGGPFEKTEDRDNPFSFDFFAVDFNE----EFTAMHGHILLDQTEYV 159 (973)
T ss_pred cCCCceEEEecCCCCchHH--HHHHHHHHhhhhcCCchhhhhcccCccccceEEEcccc----hhhhhccHhHHHHHHHH
Confidence 3456679999999887654 5665544431 234556666532 11100 00113445556
Q ss_pred HHHHHHHHhhCC---------CCcEEEEEEcHHHHHHHHHHhhcCCC--CCCceEEEEcCCcC
Q 024826 173 QEVVAHVGSKYP---------KAHLYAVGWSLGANILIRYLGHESHS--CPLSGAVSLCNPFN 224 (262)
Q Consensus 173 ~~~l~~l~~~~~---------~~~i~lvG~SlGg~ia~~~a~~~~~~--~~i~~~v~l~~p~~ 224 (262)
.+++.++...|. ...++++||||||.+|...+- +++. ..|.-++.+++|..
T Consensus 160 ~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~t-lkn~~~~sVntIITlssPH~ 221 (973)
T KOG3724|consen 160 NDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLT-LKNEVQGSVNTIITLSSPHA 221 (973)
T ss_pred HHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHh-hhhhccchhhhhhhhcCccc
Confidence 677777765442 225999999999998876654 3322 23777778887664
No 163
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=97.66 E-value=0.00087 Score=54.29 Aligned_cols=84 Identities=15% Similarity=0.030 Sum_probs=53.8
Q ss_pred HHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCC-
Q 024826 132 RHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHS- 210 (262)
Q Consensus 132 ~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~- 210 (262)
..+...+ ...+.++.+|.+|++.+.... ......+....+.+....+..++.++|||+||.++...+....+.
T Consensus 16 ~~~~~~l-~~~~~v~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~l~g~s~Gg~~a~~~a~~l~~~~ 89 (212)
T smart00824 16 ARLAAAL-RGRRDVSALPLPGFGPGEPLP-----ASADALVEAQAEAVLRAAGGRPFVLVGHSSGGLLAHAVAARLEARG 89 (212)
T ss_pred HHHHHhc-CCCccEEEecCCCCCCCCCCC-----CCHHHHHHHHHHHHHHhcCCCCeEEEEECHHHHHHHHHHHHHHhCC
Confidence 4555555 357899999999997654221 122222333445555555666899999999999998888764321
Q ss_pred CCCceEEEEcC
Q 024826 211 CPLSGAVSLCN 221 (262)
Q Consensus 211 ~~i~~~v~l~~ 221 (262)
..+.+++++..
T Consensus 90 ~~~~~l~~~~~ 100 (212)
T smart00824 90 IPPAAVVLLDT 100 (212)
T ss_pred CCCcEEEEEcc
Confidence 12777766654
No 164
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.52 E-value=0.0003 Score=55.20 Aligned_cols=57 Identities=14% Similarity=0.037 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCC--CCCceEEEEcCCcCh
Q 024826 169 LGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHS--CPLSGAVSLCNPFNL 225 (262)
Q Consensus 169 ~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~--~~i~~~v~l~~p~~~ 225 (262)
..++...++....++|..+|+++||||||.++..++...... ..+..++.+++|-..
T Consensus 11 ~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p~~~ 69 (153)
T cd00741 11 ANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPRVG 69 (153)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCCccc
Confidence 345666666666667888999999999999999988877652 236667888887643
No 165
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=97.49 E-value=0.0018 Score=58.25 Aligned_cols=108 Identities=15% Similarity=0.208 Sum_probs=71.5
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHh-CCceEEEEcCCCCCCCCCCCcCCCC-------------------------
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARS-KGWRVVVFNSRGCGDSPVTTPQFYS------------------------- 165 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~-~G~~vv~~d~rG~G~s~~~~~~~~~------------------------- 165 (262)
.+.+|+++.|++|+.+..|...+...+++ .+..|+.+||=+.|..+...+..+.
T Consensus 34 ~kaIvfiI~GfG~dan~~~~d~~r~~iA~~fnvv~I~V~YHCf~~R~q~~A~~~~~~~D~~iLk~~L~~i~i~~~~i~~~ 113 (403)
T PF11144_consen 34 IKAIVFIIPGFGADANSNYLDFMREYIAKKFNVVVISVNYHCFCNRPQYGAKFYFDDIDKEILKKSLEKINIDSESINTY 113 (403)
T ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHhCCEEEEEeeeeheeeccccCchhcCCHHHHHHHHHHHHHcCccccccccc
Confidence 67889999999999998876666666553 2445556677666633221111000
Q ss_pred ---------------------------------------cC-------cHHHHHHHHHHHHhhCCC----CcEEEEEEcH
Q 024826 166 ---------------------------------------AS-------FLGDMQEVVAHVGSKYPK----AHLYAVGWSL 195 (262)
Q Consensus 166 ---------------------------------------~~-------~~~Dl~~~l~~l~~~~~~----~~i~lvG~Sl 195 (262)
.+ .+-|+..++.++.+.++. -|+.++|+|.
T Consensus 114 ~~~~~~~~~L~~~I~~lK~~~~L~~d~kl~ls~tl~P~n~EYQN~GIMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~ 193 (403)
T PF11144_consen 114 DNAEQIYELLNQNITELKEQGILPQDYKLNLSCTLIPPNGEYQNFGIMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSH 193 (403)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCcEEeEEEEecCCchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCc
Confidence 00 123677777777766542 3899999999
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEEcC
Q 024826 196 GANILIRYLGHESHSCPLSGAVSLCN 221 (262)
Q Consensus 196 Gg~ia~~~a~~~~~~~~i~~~v~l~~ 221 (262)
||.++...+.-.|.. +++++=-|+
T Consensus 194 G~yla~l~~k~aP~~--~~~~iDns~ 217 (403)
T PF11144_consen 194 GGYLAHLCAKIAPWL--FDGVIDNSS 217 (403)
T ss_pred HHHHHHHHHhhCccc--eeEEEecCc
Confidence 999999999989987 776554333
No 166
>PLN02606 palmitoyl-protein thioesterase
Probab=97.48 E-value=0.001 Score=57.77 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=64.8
Q ss_pred cEEEEECCCCCCCCcHHHHHHHHHHHh-CCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHh--hCCCCcEEE
Q 024826 114 PVLILMPGLTGGSEDSYVRHMLLRARS-KGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGS--KYPKAHLYA 190 (262)
Q Consensus 114 p~vv~lHG~~g~~~~~y~~~~~~~l~~-~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~--~~~~~~i~l 190 (262)
.+||+.||++.+....-+..+...+.+ .|+.+..+- -|-+. ...+.....+.+..+.+.++. +..+ -+++
T Consensus 27 ~PvViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~~~-----~~s~~~~~~~Qv~~vce~l~~~~~L~~-G~na 99 (306)
T PLN02606 27 VPFVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGNGV-----QDSLFMPLRQQASIACEKIKQMKELSE-GYNI 99 (306)
T ss_pred CCEEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECCCc-----ccccccCHHHHHHHHHHHHhcchhhcC-ceEE
Confidence 458999999733332234666666642 366554444 22111 111223344555555555554 1122 4999
Q ss_pred EEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 191 VGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 191 vG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
+|+|-||.++-.++.+.++..+|+..|.+++|..
T Consensus 100 IGfSQGglflRa~ierc~~~p~V~nlISlggph~ 133 (306)
T PLN02606 100 VAESQGNLVARGLIEFCDNAPPVINYVSLGGPHA 133 (306)
T ss_pred EEEcchhHHHHHHHHHCCCCCCcceEEEecCCcC
Confidence 9999999999999998877456999999998764
No 167
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=97.36 E-value=0.0077 Score=48.60 Aligned_cols=108 Identities=21% Similarity=0.236 Sum_probs=65.9
Q ss_pred CCcEEEEECCCCCCCCcH---HHH---HHHHHH------HhCCceEEEEcCCCCCCCC-CCCcCCCC----cCcHHHHHH
Q 024826 112 DSPVLILMPGLTGGSEDS---YVR---HMLLRA------RSKGWRVVVFNSRGCGDSP-VTTPQFYS----ASFLGDMQE 174 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~---y~~---~~~~~l------~~~G~~vv~~d~rG~G~s~-~~~~~~~~----~~~~~Dl~~ 174 (262)
..-+.++++|.+.+.... +.. .+...+ ...+-.+-++-+-|+ ..+ ........ ..-..++..
T Consensus 18 A~~Vav~VPG~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vAvV~WlgY-daP~~~~~~a~~~~~A~~ga~~L~~ 96 (177)
T PF06259_consen 18 ADHVAVLVPGTGTTLDSFLGGMDDEARALRAAAARAARAAGPGGSVAVVAWLGY-DAPAGGLPDAASPGYARAGAPRLAR 96 (177)
T ss_pred cCeeEEEcCCCCCCcccccchhHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcCC-CCCCCccccccCchHHHHHHHHHHH
Confidence 456788999987544321 111 111111 112335555555555 222 11111112 233557888
Q ss_pred HHHHHHhhC-CCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCC
Q 024826 175 VVAHVGSKY-PKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNP 222 (262)
Q Consensus 175 ~l~~l~~~~-~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p 222 (262)
+++-++... +..++.++|||+|+.++...+.+.+.. ++.+|.+++|
T Consensus 97 f~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~~~~~--vddvv~~GSP 143 (177)
T PF06259_consen 97 FLDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQGGLR--VDDVVLVGSP 143 (177)
T ss_pred HHHHhhhhcCCCCCEEEEEecchhHHHHHHhhhCCCC--cccEEEECCC
Confidence 888888776 677999999999999998888774554 8888888875
No 168
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=97.35 E-value=0.00023 Score=66.36 Aligned_cols=142 Identities=15% Similarity=0.059 Sum_probs=100.4
Q ss_pred CCcceEEEEcCCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCC-
Q 024826 82 VKLKRECIRTKDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTT- 160 (262)
Q Consensus 82 ~~~~r~~i~~~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~- 160 (262)
...+..+.++.||..|.+..+. ++.+.. +.|++|.-.|...-+...........-.++|...+.-|.||-|.-.-..
T Consensus 392 ~~veQ~~atSkDGT~IPYFiv~-K~~~~d-~~pTll~aYGGF~vsltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH 469 (648)
T COG1505 392 YEVEQFFATSKDGTRIPYFIVR-KGAKKD-ENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWH 469 (648)
T ss_pred ceEEEEEEEcCCCccccEEEEe-cCCcCC-CCceEEEeccccccccCCccchhhHHHHhcCCeEEEEecccCCccCHHHH
Confidence 3345555667899999988776 332233 6898888887665555433333335556889999999999998654211
Q ss_pred --c-CCCCcCcHHHHHHHHHHHHhhCC--CCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHH
Q 024826 161 --P-QFYSASFLGDMQEVVAHVGSKYP--KAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVI 227 (262)
Q Consensus 161 --~-~~~~~~~~~Dl~~~l~~l~~~~~--~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~ 227 (262)
. ...-....+|..++.+.+.++.= .+++.+.|-|-||.++...+.+.|+. +.++|+-.|-+|+..
T Consensus 470 ~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPel--fgA~v~evPllDMlR 539 (648)
T COG1505 470 QAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPEL--FGAAVCEVPLLDMLR 539 (648)
T ss_pred HHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhh--hCceeeccchhhhhh
Confidence 0 11113456899999999987632 23799999999999999999999998 888787777777643
No 169
>PLN02633 palmitoyl protein thioesterase family protein
Probab=97.34 E-value=0.0029 Score=55.10 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=66.1
Q ss_pred cEEEEECCCCCCCCcHHHHHHHHHHHh-CCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHh--hCCCCcEEE
Q 024826 114 PVLILMPGLTGGSEDSYVRHMLLRARS-KGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGS--KYPKAHLYA 190 (262)
Q Consensus 114 p~vv~lHG~~g~~~~~y~~~~~~~l~~-~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~--~~~~~~i~l 190 (262)
-++|+.||++.+....-+..+...+.+ .|..+.++.. |.+ ....+.....+.+..+.+.++. +..+ -+++
T Consensus 26 ~P~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~i---g~~---~~~s~~~~~~~Qve~vce~l~~~~~l~~-G~na 98 (314)
T PLN02633 26 VPFIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEI---GNG---VGDSWLMPLTQQAEIACEKVKQMKELSQ-GYNI 98 (314)
T ss_pred CCeEEecCCCcccCCchHHHHHHHHHhCCCCceEEEEE---CCC---ccccceeCHHHHHHHHHHHHhhchhhhC-cEEE
Confidence 458999999755443334555555533 3565555543 222 1122234444555555555554 1222 4999
Q ss_pred EEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 191 VGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 191 vG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
+|||-||.++-.++.+.++..+|+..|.+++|..
T Consensus 99 IGfSQGGlflRa~ierc~~~p~V~nlISlggph~ 132 (314)
T PLN02633 99 VGRSQGNLVARGLIEFCDGGPPVYNYISLAGPHA 132 (314)
T ss_pred EEEccchHHHHHHHHHCCCCCCcceEEEecCCCC
Confidence 9999999999999998887456999999998654
No 170
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=97.32 E-value=0.00079 Score=55.97 Aligned_cols=109 Identities=14% Similarity=0.169 Sum_probs=48.2
Q ss_pred CCcEEEEECCCCCCCCcHHH---HHHHHHHHhCCceEEEEcCCCCC-----CCCC----------CCcCC--C-------
Q 024826 112 DSPVLILMPGLTGGSEDSYV---RHMLLRARSKGWRVVVFNSRGCG-----DSPV----------TTPQF--Y------- 164 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~---~~~~~~l~~~G~~vv~~d~rG~G-----~s~~----------~~~~~--~------- 164 (262)
.++.||++||++.+.. .+- ..+...+.+.++..+.+|-+--- -.+. ..+.. +
T Consensus 3 ~k~riLcLHG~~~na~-if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 81 (212)
T PF03959_consen 3 RKPRILCLHGYGQNAE-IFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDDH 81 (212)
T ss_dssp ---EEEEE--TT--HH-HHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-SG
T ss_pred CCceEEEeCCCCcCHH-HHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCcc
Confidence 5788999999965443 221 12333444348999988876322 1100 00000 0
Q ss_pred -CcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcC------CCCCCceEEEEcCCc
Q 024826 165 -SASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHES------HSCPLSGAVSLCNPF 223 (262)
Q Consensus 165 -~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~------~~~~i~~~v~l~~p~ 223 (262)
..+..+-+..+.+.+.+..| -..++|||.||.+++.++.... ...+++.+|.+|+..
T Consensus 82 ~~~~~~~sl~~l~~~i~~~GP--fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~ 145 (212)
T PF03959_consen 82 EYEGLDESLDYLRDYIEENGP--FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFP 145 (212)
T ss_dssp GG---HHHHHHHHHHHHHH-----SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES---
T ss_pred cccCHHHHHHHHHHHHHhcCC--eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccC
Confidence 11122333344444555433 3569999999999998886432 123588888888744
No 171
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=97.28 E-value=0.00083 Score=51.58 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCC-----CCCceEEEEcCCc
Q 024826 168 FLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHS-----CPLSGAVSLCNPF 223 (262)
Q Consensus 168 ~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~-----~~i~~~v~l~~p~ 223 (262)
+.+.+.+.++.+..++++.+|.+.|||+||.+|..++....+. ..+. ++..++|-
T Consensus 46 ~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~-~~~fg~P~ 105 (140)
T PF01764_consen 46 LYDQILDALKELVEKYPDYSIVITGHSLGGALASLAAADLASHGPSSSSNVK-CYTFGAPR 105 (140)
T ss_dssp HHHHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEE-EEEES-S-
T ss_pred HHHHHHHHHHHHHhcccCccchhhccchHHHHHHHHHHhhhhccccccccee-eeecCCcc
Confidence 3446667777777788888999999999999998877653321 1244 45555543
No 172
>KOG3101 consensus Esterase D [General function prediction only]
Probab=97.26 E-value=0.00049 Score=56.43 Aligned_cols=133 Identities=19% Similarity=0.274 Sum_probs=74.3
Q ss_pred ecCCCCCCCCCCcEEEEECCCCCCCCcHHHH-HHHHHHHhCCceEEEEcC--CCCC---CCC-C---CCcCCCC----cC
Q 024826 102 ISGDHQLLPPDSPVLILMPGLTGGSEDSYVR-HMLLRARSKGWRVVVFNS--RGCG---DSP-V---TTPQFYS----AS 167 (262)
Q Consensus 102 ~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~-~~~~~l~~~G~~vv~~d~--rG~G---~s~-~---~~~~~~~----~~ 167 (262)
+.|+........|++.++-|++........+ .+.....++|..|+.+|- ||+- ..+ . ....+|. +-
T Consensus 33 ylPp~a~~~k~~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAGFYvnAt~ep 112 (283)
T KOG3101|consen 33 YLPPDAPRGKRCPVLFYLSGLTCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAGFYVNATQEP 112 (283)
T ss_pred ecCCCcccCCcCceEEEecCCcccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCceeEEecccch
Confidence 3344333444579999999998765432222 233456778999999994 5552 111 0 0011111 11
Q ss_pred cHH----------HHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCC-CCCceEEEEcCCcChHHHHHHHHh
Q 024826 168 FLG----------DMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHS-CPLSGAVSLCNPFNLVIADQDFRM 234 (262)
Q Consensus 168 ~~~----------Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~-~~i~~~v~l~~p~~~~~~~~~~~~ 234 (262)
|.+ ++.+.++.........++.+.||||||.=++..+.+++.+ ..+.+..-|++|.+..=.++.+..
T Consensus 113 w~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~cpWGqKAf~g 190 (283)
T KOG3101|consen 113 WAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPINCPWGQKAFTG 190 (283)
T ss_pred HhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcccCcchHHHhhc
Confidence 211 2222222111112234799999999999998877777766 235566667777765545554443
No 173
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=97.23 E-value=0.0049 Score=56.13 Aligned_cols=139 Identities=17% Similarity=0.200 Sum_probs=81.3
Q ss_pred eEEEEcC--CCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHH-----H--------------hCCce
Q 024826 86 RECIRTK--DDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRA-----R--------------SKGWR 144 (262)
Q Consensus 86 r~~i~~~--dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l-----~--------------~~G~~ 144 (262)
.-+++.. .+..+..+++..++ .+.++|+||.+.|..|.|.. .-.+. +. . ..-.+
T Consensus 13 sGyl~~~~~~~~~lfyw~~~s~~--~~~~~Pl~~wlnGGPG~SS~--~g~f~-e~GP~~~~~~~~~~l~~n~~sW~~~an 87 (415)
T PF00450_consen 13 SGYLPVNDNENAHLFYWFFESRN--DPEDDPLILWLNGGPGCSSM--WGLFG-ENGPFRINPDGPYTLEDNPYSWNKFAN 87 (415)
T ss_dssp EEEEEECTTTTEEEEEEEEE-SS--GGCSS-EEEEEE-TTTB-TH--HHHHC-TTSSEEEETTSTSEEEE-TT-GGGTSE
T ss_pred EEEEecCCCCCcEEEEEEEEeCC--CCCCccEEEEecCCceeccc--ccccc-ccCceEEeecccccccccccccccccc
Confidence 3344555 45566666666553 45678999999999998753 11211 10 0 12257
Q ss_pred EEEEcCC-CCCCCCCCCcCCC---CcCcHHHHHHHHHHHHhhCC---CCcEEEEEEcHHHHHHHHHHhh---cCC-----
Q 024826 145 VVVFNSR-GCGDSPVTTPQFY---SASFLGDMQEVVAHVGSKYP---KAHLYAVGWSLGANILIRYLGH---ESH----- 209 (262)
Q Consensus 145 vv~~d~r-G~G~s~~~~~~~~---~~~~~~Dl~~~l~~l~~~~~---~~~i~lvG~SlGg~ia~~~a~~---~~~----- 209 (262)
++-+|.| |.|.|-...+..+ ....++|+.++++..-.++| ..+++++|.|+||..+..++.. ...
T Consensus 88 ~l~iD~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~ 167 (415)
T PF00450_consen 88 LLFIDQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQP 167 (415)
T ss_dssp EEEE--STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--ST
T ss_pred eEEEeecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhcccccccc
Confidence 8889955 8998865544432 24456677777766666665 4499999999999876555532 221
Q ss_pred CCCCceEEEEcCCcChHHHH
Q 024826 210 SCPLSGAVSLCNPFNLVIAD 229 (262)
Q Consensus 210 ~~~i~~~v~l~~p~~~~~~~ 229 (262)
...++++++.++-.|.....
T Consensus 168 ~inLkGi~IGng~~dp~~~~ 187 (415)
T PF00450_consen 168 KINLKGIAIGNGWIDPRIQY 187 (415)
T ss_dssp TSEEEEEEEESE-SBHHHHH
T ss_pred ccccccceecCccccccccc
Confidence 23588877777777765443
No 174
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=97.21 E-value=0.0055 Score=56.66 Aligned_cols=105 Identities=17% Similarity=0.163 Sum_probs=74.6
Q ss_pred CCcEEEEE----C--CCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCC
Q 024826 112 DSPVLILM----P--GLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPK 185 (262)
Q Consensus 112 ~~p~vv~l----H--G~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~ 185 (262)
++|.||+= | |++|-..++ -+....+.|+.|+.+.+. +.+.+..+..+...-..++++.+...+|.
T Consensus 68 krP~vViDPRAGHGpGIGGFK~dS----evG~AL~~GHPvYFV~F~-----p~P~pgQTl~DV~~ae~~Fv~~V~~~hp~ 138 (581)
T PF11339_consen 68 KRPFVVIDPRAGHGPGIGGFKPDS----EVGVALRAGHPVYFVGFF-----PEPEPGQTLEDVMRAEAAFVEEVAERHPD 138 (581)
T ss_pred CCCeEEeCCCCCCCCCccCCCccc----HHHHHHHcCCCeEEEEec-----CCCCCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 45655554 3 454544432 233455679999887653 22334434444455566788888888887
Q ss_pred C-cEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHH
Q 024826 186 A-HLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVI 227 (262)
Q Consensus 186 ~-~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~ 227 (262)
. +.+++|-+.||..++.+++.+|+. +.-+|+-++|.+.+.
T Consensus 139 ~~kp~liGnCQgGWa~~mlAA~~Pd~--~gplvlaGaPlsywa 179 (581)
T PF11339_consen 139 APKPNLIGNCQGGWAAMMLAALRPDL--VGPLVLAGAPLSYWA 179 (581)
T ss_pred CCCceEEeccHHHHHHHHHHhcCcCc--cCceeecCCCccccc
Confidence 6 899999999999999999999998 888888888998776
No 175
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=97.18 E-value=0.00054 Score=64.34 Aligned_cols=92 Identities=10% Similarity=0.069 Sum_probs=64.8
Q ss_pred HHHHHHHHhCCceEEEEcCCCCCCCCCCCcCC--CCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcC-
Q 024826 132 RHMLLRARSKGWRVVVFNSRGCGDSPVTTPQF--YSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHES- 208 (262)
Q Consensus 132 ~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~--~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~- 208 (262)
..+++.|.+.||. -.|++|...--...+.. ...++...+...|+.+.+..++.|++++||||||.+++.++..-.
T Consensus 159 ~kLIe~L~~iGY~--~~nL~gAPYDWRls~~~le~rd~YF~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyFL~wv~~ 236 (642)
T PLN02517 159 AVLIANLARIGYE--EKNMYMAAYDWRLSFQNTEVRDQTLSRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHFMKWVEA 236 (642)
T ss_pred HHHHHHHHHcCCC--CCceeecccccccCccchhhhhHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHHHHhccc
Confidence 6788899999997 45555553221111111 125666788899998877766779999999999999999887321
Q ss_pred ---------C---CCCCceEEEEcCCcCh
Q 024826 209 ---------H---SCPLSGAVSLCNPFNL 225 (262)
Q Consensus 209 ---------~---~~~i~~~v~l~~p~~~ 225 (262)
. +..|++.|.+++||--
T Consensus 237 ~~~~gG~gG~~W~dKyI~s~I~Iagp~lG 265 (642)
T PLN02517 237 PAPMGGGGGPGWCAKHIKAVMNIGGPFLG 265 (642)
T ss_pred cccccCCcchHHHHHHHHHheecccccCC
Confidence 0 1258999999999863
No 176
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.05 E-value=0.0014 Score=54.96 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCC---CCCceEEEEcCCc
Q 024826 169 LGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHS---CPLSGAVSLCNPF 223 (262)
Q Consensus 169 ~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~---~~i~~~v~l~~p~ 223 (262)
..++...++.+.+++|+.++++.||||||.+|..++...... ..+. ++..++|-
T Consensus 111 ~~~~~~~~~~~~~~~p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~-~~tFg~P~ 167 (229)
T cd00519 111 YNQVLPELKSALKQYPDYKIIVTGHSLGGALASLLALDLRLRGPGSDVT-VYTFGQPR 167 (229)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEccCHHHHHHHHHHHHHHhhCCCCceE-EEEeCCCC
Confidence 345566666677778888999999999999998877764321 1255 45556544
No 177
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.008 Score=51.10 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=64.4
Q ss_pred cEEEEECCCCCCCCcHHHHHHHHHHHhC-CceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhh--CCCCcEEE
Q 024826 114 PVLILMPGLTGGSEDSYVRHMLLRARSK-GWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSK--YPKAHLYA 190 (262)
Q Consensus 114 p~vv~lHG~~g~~~~~y~~~~~~~l~~~-G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~--~~~~~i~l 190 (262)
-++|++||++....+.-+..+.+.+.+. |..|.+++.- -| . ...+..-..+.+..+.+.++.. .++ -+++
T Consensus 24 ~P~ii~HGigd~c~~~~~~~~~q~l~~~~g~~v~~leig-~g-~----~~s~l~pl~~Qv~~~ce~v~~m~~lsq-Gyni 96 (296)
T KOG2541|consen 24 VPVIVWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEIG-DG-I----KDSSLMPLWEQVDVACEKVKQMPELSQ-GYNI 96 (296)
T ss_pred CCEEEEeccCcccccchHHHHHHHHHhCCCCeeEEEEec-CC-c----chhhhccHHHHHHHHHHHHhcchhccC-ceEE
Confidence 4489999998665543345666666553 7788888752 22 0 1111123334444455555432 233 4999
Q ss_pred EEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 191 VGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 191 vG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
+|+|-||.++-.++...++ .+++..|.+++|.-
T Consensus 97 vg~SQGglv~Raliq~cd~-ppV~n~ISL~gPha 129 (296)
T KOG2541|consen 97 VGYSQGGLVARALIQFCDN-PPVKNFISLGGPHA 129 (296)
T ss_pred EEEccccHHHHHHHHhCCC-CCcceeEeccCCcC
Confidence 9999999888666655554 68999999998653
No 178
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=96.94 E-value=0.00063 Score=61.95 Aligned_cols=92 Identities=11% Similarity=0.153 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhCCce------EEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHH
Q 024826 129 SYVRHMLLRARSKGWR------VVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIR 202 (262)
Q Consensus 129 ~y~~~~~~~l~~~G~~------vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~ 202 (262)
.|+..+++.+..-||. -..+|+|- |...+.+ ...+...+...++...+..+..|+++++||||+.+.+.
T Consensus 124 ~~w~~~i~~lv~~GYe~~~~l~ga~YDwRl---s~~~~e~--rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~l~~ly 198 (473)
T KOG2369|consen 124 WYWHELIENLVGIGYERGKTLFGAPYDWRL---SYHNSEE--RDQYLSKLKKKIETMYKLNGGKKVVLISHSMGGLYVLY 198 (473)
T ss_pred HHHHHHHHHHHhhCcccCceeeccccchhh---ccCChhH--HHHHHHHHHHHHHHHHHHcCCCceEEEecCCccHHHHH
Confidence 5667788888888886 23566662 1111111 14556778888888888888889999999999999999
Q ss_pred HHhhcCCC------CCCceEEEEcCCcCh
Q 024826 203 YLGHESHS------CPLSGAVSLCNPFNL 225 (262)
Q Consensus 203 ~a~~~~~~------~~i~~~v~l~~p~~~ 225 (262)
++...++. ..|++.+.+++||-.
T Consensus 199 Fl~w~~~~~~~W~~k~I~sfvnig~p~lG 227 (473)
T KOG2369|consen 199 FLKWVEAEGPAWCDKYIKSFVNIGAPWLG 227 (473)
T ss_pred HHhcccccchhHHHHHHHHHHccCchhcC
Confidence 99988873 247777777777753
No 179
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=96.93 E-value=0.0016 Score=52.72 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=50.3
Q ss_pred ceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCC----CCCceEEE
Q 024826 143 WRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHS----CPLSGAVS 218 (262)
Q Consensus 143 ~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~----~~i~~~v~ 218 (262)
..+..++|+-..... .-......-+.++...++....+.|+++|+++|+|.||.++..++...+.. .+|.++++
T Consensus 40 ~~~~~V~YpA~~~~~--~y~~S~~~G~~~~~~~i~~~~~~CP~~kivl~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvl 117 (179)
T PF01083_consen 40 VAVQGVEYPASLGPN--SYGDSVAAGVANLVRLIEEYAARCPNTKIVLAGYSQGAMVVGDALSGDGLPPDVADRIAAVVL 117 (179)
T ss_dssp EEEEE--S---SCGG--SCHHHHHHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHTTSSHHHHHHEEEEEE
T ss_pred eEEEecCCCCCCCcc--cccccHHHHHHHHHHHHHHHHHhCCCCCEEEEecccccHHHHHHHHhccCChhhhhhEEEEEE
Confidence 455556777543221 000011233567777777777888999999999999999999999881111 24889999
Q ss_pred EcCCcC
Q 024826 219 LCNPFN 224 (262)
Q Consensus 219 l~~p~~ 224 (262)
++.|..
T Consensus 118 fGdP~~ 123 (179)
T PF01083_consen 118 FGDPRR 123 (179)
T ss_dssp ES-TTT
T ss_pred ecCCcc
Confidence 998876
No 180
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=96.87 E-value=0.0035 Score=59.45 Aligned_cols=123 Identities=16% Similarity=0.083 Sum_probs=68.9
Q ss_pred eEEEEeecCCCCCCCCCCcEEEEECCCC---CCCCcHHHHHHHHHHHhCCceEEEEcCC----CCCCCCCCCcCCCCcCc
Q 024826 96 SVALDWISGDHQLLPPDSPVLILMPGLT---GGSEDSYVRHMLLRARSKGWRVVVFNSR----GCGDSPVTTPQFYSASF 168 (262)
Q Consensus 96 ~i~l~~~~~~~~~~~~~~p~vv~lHG~~---g~~~~~y~~~~~~~l~~~G~~vv~~d~r----G~G~s~~~~~~~~~~~~ 168 (262)
.+.+..+.++...... .|++|++||.+ |+............+..+..-|+.+++| |+.... ......+.+
T Consensus 96 CLylNV~tp~~~~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~-d~~~~gN~g- 172 (545)
T KOG1516|consen 96 CLYLNVYTPQGCSESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTG-DSAAPGNLG- 172 (545)
T ss_pred CceEEEeccCCCccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecC-CCCCCCccc-
Confidence 3666667665422112 79999999965 2211111112223344557788899998 332221 111112222
Q ss_pred HHHHHHHHHHHHhh---CC--CCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcC
Q 024826 169 LGDMQEVVAHVGSK---YP--KAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCN 221 (262)
Q Consensus 169 ~~Dl~~~l~~l~~~---~~--~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~ 221 (262)
..|...+++|+++. ++ ..+|.++|||.||..+.........+.-...+|..++
T Consensus 173 l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG 230 (545)
T KOG1516|consen 173 LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSG 230 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcc
Confidence 34888899998864 33 3489999999999888655543222222444555554
No 181
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=96.78 E-value=0.0035 Score=52.61 Aligned_cols=52 Identities=21% Similarity=0.318 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCC--CCCceEEEEcCC
Q 024826 170 GDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHS--CPLSGAVSLCNP 222 (262)
Q Consensus 170 ~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~--~~i~~~v~l~~p 222 (262)
....+.++.+...++. ++++.|||+||++|...+....+. .+|.++....+|
T Consensus 69 ~~A~~yl~~~~~~~~~-~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgP 122 (224)
T PF11187_consen 69 KSALAYLKKIAKKYPG-KIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGP 122 (224)
T ss_pred HHHHHHHHHHHHhCCC-CEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCC
Confidence 4556667777777776 599999999999999888774432 248888777665
No 182
>COG3150 Predicted esterase [General function prediction only]
Probab=96.73 E-value=0.018 Score=45.72 Aligned_cols=51 Identities=12% Similarity=-0.019 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcCh
Q 024826 170 GDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNL 225 (262)
Q Consensus 170 ~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~ 225 (262)
+++.+-++.+....+.....++|-|+||..+.+.+..++ |++ |++.|..-.
T Consensus 43 ~~a~~ele~~i~~~~~~~p~ivGssLGGY~At~l~~~~G----ira-v~~NPav~P 93 (191)
T COG3150 43 QQALKELEKAVQELGDESPLIVGSSLGGYYATWLGFLCG----IRA-VVFNPAVRP 93 (191)
T ss_pred HHHHHHHHHHHHHcCCCCceEEeecchHHHHHHHHHHhC----Chh-hhcCCCcCc
Confidence 445555555555555557999999999999999988876 444 666665443
No 183
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.70 E-value=0.011 Score=53.17 Aligned_cols=107 Identities=20% Similarity=0.230 Sum_probs=74.4
Q ss_pred cEEEEECCCCCCCCcHHHH--HHHHH-HHhCCceEEEEcCCCCCCCCCCCcC----------CCCcCcHHHHHHHHHHHH
Q 024826 114 PVLILMPGLTGGSEDSYVR--HMLLR-ARSKGWRVVVFNSRGCGDSPVTTPQ----------FYSASFLGDMQEVVAHVG 180 (262)
Q Consensus 114 p~vv~lHG~~g~~~~~y~~--~~~~~-l~~~G~~vv~~d~rG~G~s~~~~~~----------~~~~~~~~Dl~~~l~~l~ 180 (262)
.+|++--|..|+-+ ++.. .+... ..+.+--+|..++|=+|+|---..+ ++++....|..+++.+++
T Consensus 81 gPIffYtGNEGdie-~Fa~ntGFm~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK 159 (492)
T KOG2183|consen 81 GPIFFYTGNEGDIE-WFANNTGFMWDLAPELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLK 159 (492)
T ss_pred CceEEEeCCcccHH-HHHhccchHHhhhHhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHh
Confidence 55777788877543 2222 12222 3345778889999999988421111 122334568889999998
Q ss_pred hhCC--CCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 181 SKYP--KAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 181 ~~~~--~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
.... ..+++++|-|+||++++++=.++|+- +.++++-|+|.
T Consensus 160 ~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHi--v~GAlAaSAPv 202 (492)
T KOG2183|consen 160 RDLSAEASPVIAFGGSYGGMLAAWFRLKYPHI--VLGALAASAPV 202 (492)
T ss_pred hccccccCcEEEecCchhhHHHHHHHhcChhh--hhhhhhccCce
Confidence 7643 45899999999999999999999997 77777777765
No 184
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0048 Score=53.34 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=67.4
Q ss_pred CCCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCC----ceEEEEcCCCCCCCCCCCcCCC-CcCcHHHHH-HHHHHHHhh
Q 024826 109 LPPDSPVLILMPGLTGGSEDSYVRHMLLRARSKG----WRVVVFNSRGCGDSPVTTPQFY-SASFLGDMQ-EVVAHVGSK 182 (262)
Q Consensus 109 ~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G----~~vv~~d~rG~G~s~~~~~~~~-~~~~~~Dl~-~~l~~l~~~ 182 (262)
...+.|++++.||-.-... .-+....+.+...| -.++.+|+-. .......++ +.++.+.+. +++=++.++
T Consensus 94 ~~~k~pvl~~~DG~~~~~~-g~i~~~~dsli~~g~i~pai~vgid~~d---~~~R~~~~~~n~~~~~~L~~eLlP~v~~~ 169 (299)
T COG2382 94 PLEKYPVLYLQDGQDWFRS-GRIPRILDSLIAAGEIPPAILVGIDYID---VKKRREELHCNEAYWRFLAQELLPYVEER 169 (299)
T ss_pred ccccccEEEEeccHHHHhc-CChHHHHHHHHHcCCCCCceEEecCCCC---HHHHHHHhcccHHHHHHHHHHhhhhhhcc
Confidence 3447899999998521110 11233445554444 3455555421 111111222 244444443 566777777
Q ss_pred CCCC----cEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 183 YPKA----HLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 183 ~~~~----~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
|+.. .-+++|.|+||.+++..+..+|+. +-+++..|+.++
T Consensus 170 yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~--FG~V~s~Sps~~ 213 (299)
T COG2382 170 YPTSADADGRVLAGDSLGGLVSLYAGLRHPER--FGHVLSQSGSFW 213 (299)
T ss_pred CcccccCCCcEEeccccccHHHHHHHhcCchh--hceeeccCCccc
Confidence 7643 467999999999999999999998 888888888655
No 185
>COG0627 Predicted esterase [General function prediction only]
Probab=96.63 E-value=0.0087 Score=52.80 Aligned_cols=114 Identities=25% Similarity=0.329 Sum_probs=67.2
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHHHH-HHHhCCceEEEEcCC--------------CCCCC---CCCCcC-CCC-cCcHH
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHMLL-RARSKGWRVVVFNSR--------------GCGDS---PVTTPQ-FYS-ASFLG 170 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~~~-~l~~~G~~vv~~d~r--------------G~G~s---~~~~~~-~~~-~~~~~ 170 (262)
.+-|+++++||.+++....|...-++ ...+.|+.++..|-. |-+.| +...+. ... ..|-+
T Consensus 52 ~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~~~q~~t 131 (316)
T COG0627 52 RDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASGPYQWET 131 (316)
T ss_pred CCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccCccchhH
Confidence 36788999999988764444443333 345568888776432 22111 111110 000 11111
Q ss_pred HH-HHHHHHHHhhCCC----CcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChH
Q 024826 171 DM-QEVVAHVGSKYPK----AHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLV 226 (262)
Q Consensus 171 Dl-~~~l~~l~~~~~~----~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~ 226 (262)
-+ .++-..+.+.++. +...++||||||.=++.+|..+|++ ++.+..+++.++..
T Consensus 132 fl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~--f~~~sS~Sg~~~~s 190 (316)
T COG0627 132 FLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDR--FKSASSFSGILSPS 190 (316)
T ss_pred HHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcch--hceecccccccccc
Confidence 11 1222233344441 2689999999999999999999987 88888888876644
No 186
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=96.60 E-value=0.0058 Score=50.88 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhCC--CCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 171 DMQEVVAHVGSKYP--KAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 171 Dl~~~l~~l~~~~~--~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
-+.++++|++.+-. ..+|.++|.|.||-+++.++..+++ |+++|+++++.-
T Consensus 5 yfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~~---i~avVa~~ps~~ 57 (213)
T PF08840_consen 5 YFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFPQ---ISAVVAISPSSV 57 (213)
T ss_dssp HHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSSS---EEEEEEES--SB
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCCC---ccEEEEeCCcee
Confidence 46778899987622 2489999999999999999999995 999999888554
No 187
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=96.58 E-value=0.022 Score=48.16 Aligned_cols=98 Identities=16% Similarity=0.222 Sum_probs=56.4
Q ss_pred CCcEEEEECCCC-CCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCc----HHHHHHHHHHHHhhCC--
Q 024826 112 DSPVLILMPGLT-GGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASF----LGDMQEVVAHVGSKYP-- 184 (262)
Q Consensus 112 ~~p~vv~lHG~~-g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~----~~Dl~~~l~~l~~~~~-- 184 (262)
++.+|=|+=|.. |..-.-..+.+.+.++++||.|++.-+.- .+.+... ....+.+++.+....+
T Consensus 16 P~gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~---------tfDH~~~A~~~~~~f~~~~~~L~~~~~~~ 86 (250)
T PF07082_consen 16 PKGVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVV---------TFDHQAIAREVWERFERCLRALQKRGGLD 86 (250)
T ss_pred CCEEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCC---------CCcHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344444444422 44434444888999999999999886631 1111122 2234445555554322
Q ss_pred --CCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEc
Q 024826 185 --KAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLC 220 (262)
Q Consensus 185 --~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~ 220 (262)
.-|++-+|||||+-+-+.....++.. -++-++++
T Consensus 87 ~~~lP~~~vGHSlGcklhlLi~s~~~~~--r~gniliS 122 (250)
T PF07082_consen 87 PAYLPVYGVGHSLGCKLHLLIGSLFDVE--RAGNILIS 122 (250)
T ss_pred cccCCeeeeecccchHHHHHHhhhccCc--ccceEEEe
Confidence 13899999999998887766555443 34434443
No 188
>PLN02454 triacylglycerol lipase
Probab=96.58 E-value=0.0059 Score=55.41 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=39.9
Q ss_pred CcHHHHHHHHHHHHhhCCCCc--EEEEEEcHHHHHHHHHHhhcCC------CCCCceEEEEcCCc
Q 024826 167 SFLGDMQEVVAHVGSKYPKAH--LYAVGWSLGANILIRYLGHESH------SCPLSGAVSLCNPF 223 (262)
Q Consensus 167 ~~~~Dl~~~l~~l~~~~~~~~--i~lvG~SlGg~ia~~~a~~~~~------~~~i~~~v~l~~p~ 223 (262)
...+++.+.++.+.++|+..+ |++.||||||.+|+..|.+... ..+|.. +.+++|-
T Consensus 207 S~r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~di~~~g~~~~~~~V~~-~TFGsPR 270 (414)
T PLN02454 207 SARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFDIVENGVSGADIPVTA-IVFGSPQ 270 (414)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHHHHHhcccccCCceEE-EEeCCCc
Confidence 345577778888888888765 9999999999999988865321 223444 6666654
No 189
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.51 E-value=0.016 Score=53.38 Aligned_cols=110 Identities=20% Similarity=0.288 Sum_probs=79.9
Q ss_pred CCcEEEEECCCCCCCCcHHH----HHHHHHHHhCCceEEEEcCCCCCCCCCCCcC-------CCCcCcHHHHHHHHHHHH
Q 024826 112 DSPVLILMPGLTGGSEDSYV----RHMLLRARSKGWRVVVFNSRGCGDSPVTTPQ-------FYSASFLGDMQEVVAHVG 180 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~----~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~-------~~~~~~~~Dl~~~l~~l~ 180 (262)
+.|+.|++=| .|...+.|+ ........+.|-.|+.+++|=+|.|.-.... ..+.....|+.++|+.+.
T Consensus 85 ~gPiFLmIGG-Egp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n 163 (514)
T KOG2182|consen 85 GGPIFLMIGG-EGPESDKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMN 163 (514)
T ss_pred CCceEEEEcC-CCCCCCCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHH
Confidence 5666666644 332222221 1345567788999999999999987422221 122445679999999999
Q ss_pred hhCCC---CcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 181 SKYPK---AHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 181 ~~~~~---~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
.+++. .|.+.+|-|+-|.+++++=..+|+. +.++|+-|+|+.
T Consensus 164 ~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel--~~GsvASSapv~ 208 (514)
T KOG2182|consen 164 AKFNFSDDSKWITFGGSYSGSLSAWFREKYPEL--TVGSVASSAPVL 208 (514)
T ss_pred hhcCCCCCCCeEEECCCchhHHHHHHHHhCchh--heeeccccccee
Confidence 88742 3899999999999999999999998 889998888865
No 190
>PLN00413 triacylglycerol lipase
Probab=96.45 E-value=0.009 Score=54.96 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhc----CCC--CCCceEEEEcCCcC
Q 024826 171 DMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHE----SHS--CPLSGAVSLCNPFN 224 (262)
Q Consensus 171 Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~----~~~--~~i~~~v~l~~p~~ 224 (262)
++...++.+.+++|+.++++.|||+||++|..++... +.. ..+.++...++|--
T Consensus 269 ~i~~~Lk~ll~~~p~~kliVTGHSLGGALAtLaA~~L~~~~~~~~~~ri~~VYTFG~PRV 328 (479)
T PLN00413 269 TILRHLKEIFDQNPTSKFILSGHSLGGALAILFTAVLIMHDEEEMLERLEGVYTFGQPRV 328 (479)
T ss_pred HHHHHHHHHHHHCCCCeEEEEecCHHHHHHHHHHHHHHhccchhhccccceEEEeCCCCC
Confidence 5667777777789999999999999999999877531 111 13556777777653
No 191
>PLN02162 triacylglycerol lipase
Probab=96.43 E-value=0.0091 Score=54.81 Aligned_cols=54 Identities=13% Similarity=0.203 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhh---cCCC---CCCceEEEEcCCcC
Q 024826 171 DMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGH---ESHS---CPLSGAVSLCNPFN 224 (262)
Q Consensus 171 Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~---~~~~---~~i~~~v~l~~p~~ 224 (262)
.+.+.++.+..++++.++++.|||+||.+|+.++.. ++.. ..+.+++..++|--
T Consensus 263 ~I~~~L~~lL~k~p~~kliVTGHSLGGALAtLaAa~L~~~~~~~l~~~~~~vYTFGqPRV 322 (475)
T PLN02162 263 TIRQMLRDKLARNKNLKYILTGHSLGGALAALFPAILAIHGEDELLDKLEGIYTFGQPRV 322 (475)
T ss_pred HHHHHHHHHHHhCCCceEEEEecChHHHHHHHHHHHHHHccccccccccceEEEeCCCCc
Confidence 456666666667888899999999999999887542 2211 12556788877653
No 192
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=96.42 E-value=0.014 Score=52.34 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=66.0
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEE
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVG 192 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG 192 (262)
.-+-||.-|=+|.. ..-+....++.++|+.|+.+|.--+-.++.+. ...++|+..++++...+.+..++.++|
T Consensus 260 d~~av~~SGDGGWr--~lDk~v~~~l~~~gvpVvGvdsLRYfW~~rtP-----e~~a~Dl~r~i~~y~~~w~~~~~~liG 332 (456)
T COG3946 260 DTVAVFYSGDGGWR--DLDKEVAEALQKQGVPVVGVDSLRYFWSERTP-----EQIAADLSRLIRFYARRWGAKRVLLIG 332 (456)
T ss_pred ceEEEEEecCCchh--hhhHHHHHHHHHCCCceeeeehhhhhhccCCH-----HHHHHHHHHHHHHHHHhhCcceEEEEe
Confidence 34556666655532 33467788999999999999965555555432 456899999999999988888999999
Q ss_pred EcHHHHHHHHHHhhcC
Q 024826 193 WSLGANILIRYLGHES 208 (262)
Q Consensus 193 ~SlGg~ia~~~a~~~~ 208 (262)
+|+|+-+.-..-..-|
T Consensus 333 ySfGADvlP~~~n~L~ 348 (456)
T COG3946 333 YSFGADVLPFAYNRLP 348 (456)
T ss_pred ecccchhhHHHHHhCC
Confidence 9999988765544444
No 193
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=96.37 E-value=0.2 Score=42.82 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=32.1
Q ss_pred CcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 186 AHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 186 ~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
.+..++|||+||.+++..+..+|+. +.+..++||.+
T Consensus 137 ~~~~i~GhSlGGLfvl~aLL~~p~~--F~~y~~~SPSl 172 (264)
T COG2819 137 ERTAIIGHSLGGLFVLFALLTYPDC--FGRYGLISPSL 172 (264)
T ss_pred ccceeeeecchhHHHHHHHhcCcch--hceeeeecchh
Confidence 3699999999999999999999988 88888888854
No 194
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=96.30 E-value=0.01 Score=39.40 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=27.1
Q ss_pred CCcceEEEEcCCCCeEEEEeecCCC--CCCCCCCcEEEEECCCCCCCCc
Q 024826 82 VKLKRECIRTKDDGSVALDWISGDH--QLLPPDSPVLILMPGLTGGSED 128 (262)
Q Consensus 82 ~~~~r~~i~~~dg~~i~l~~~~~~~--~~~~~~~p~vv~lHG~~g~~~~ 128 (262)
...++..+.++||-.+.+.-..... ......+|+|++.||+.+++..
T Consensus 10 Y~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~~ 58 (63)
T PF04083_consen 10 YPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSDD 58 (63)
T ss_dssp ---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GGG
T ss_pred CCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccChHH
Confidence 3467888999999888888766543 2234578999999999888764
No 195
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=96.29 E-value=0.0035 Score=54.00 Aligned_cols=108 Identities=14% Similarity=0.241 Sum_probs=49.0
Q ss_pred CCcEEEEECCCCCCCC---c-HHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhh--CCC
Q 024826 112 DSPVLILMPGLTGGSE---D-SYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSK--YPK 185 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~---~-~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~--~~~ 185 (262)
...+||+.||++.+.. . .-+..++... -.|--|..++.- -+.++.. ...+.....+.+..+.+.++.. ..+
T Consensus 4 ~~~PvViwHGmGD~~~~~~~m~~i~~~i~~~-~PG~yV~si~ig-~~~~~D~-~~s~f~~v~~Qv~~vc~~l~~~p~L~~ 80 (279)
T PF02089_consen 4 SPLPVVIWHGMGDSCCNPSSMGSIKELIEEQ-HPGTYVHSIEIG-NDPSEDV-ENSFFGNVNDQVEQVCEQLANDPELAN 80 (279)
T ss_dssp SS--EEEE--TT--S--TTTHHHHHHHHHHH-STT--EEE--SS-SSHHHHH-HHHHHSHHHHHHHHHHHHHHH-GGGTT
T ss_pred CCCcEEEEEcCccccCChhHHHHHHHHHHHh-CCCceEEEEEEC-CCcchhh-hhhHHHHHHHHHHHHHHHHhhChhhhc
Confidence 3445899999975421 1 1122233322 236667666641 1111000 0001112222333344444331 112
Q ss_pred CcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcC
Q 024826 186 AHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFN 224 (262)
Q Consensus 186 ~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~ 224 (262)
-++++|||-||.++-.++.+.+.. +|+..|.+++|..
T Consensus 81 -G~~~IGfSQGgl~lRa~vq~c~~~-~V~nlISlggph~ 117 (279)
T PF02089_consen 81 -GFNAIGFSQGGLFLRAYVQRCNDP-PVHNLISLGGPHM 117 (279)
T ss_dssp --EEEEEETCHHHHHHHHHHH-TSS--EEEEEEES--TT
T ss_pred -ceeeeeeccccHHHHHHHHHCCCC-CceeEEEecCccc
Confidence 599999999999999999888753 5999999998754
No 196
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=96.26 E-value=0.01 Score=50.89 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=45.7
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHHH
Q 024826 166 ASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVIA 228 (262)
Q Consensus 166 ~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~ 228 (262)
..+..+..+++..+++.||+.+|.+.|||+||.+|..+-..++-. +|...+|=|...+
T Consensus 256 dryySa~ldI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fglP-----~VaFesPGd~~aa 313 (425)
T KOG4540|consen 256 DRYYSAALDILGAVRRIYPDARIWLTGHSLGGAIASLLGIRFGLP-----VVAFESPGDAYAA 313 (425)
T ss_pred cchhHHHHHHHHHHHHhCCCceEEEeccccchHHHHHhccccCCc-----eEEecCchhhhhh
Confidence 345567788888899999999999999999999998877777643 4777777665443
No 197
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=96.26 E-value=0.01 Score=50.89 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=45.7
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHHH
Q 024826 166 ASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVIA 228 (262)
Q Consensus 166 ~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~ 228 (262)
..+..+..+++..+++.||+.+|.+.|||+||.+|..+-..++-. +|...+|=|...+
T Consensus 256 dryySa~ldI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fglP-----~VaFesPGd~~aa 313 (425)
T COG5153 256 DRYYSAALDILGAVRRIYPDARIWLTGHSLGGAIASLLGIRFGLP-----VVAFESPGDAYAA 313 (425)
T ss_pred cchhHHHHHHHHHHHHhCCCceEEEeccccchHHHHHhccccCCc-----eEEecCchhhhhh
Confidence 345567788888899999999999999999999998877777643 4777777665443
No 198
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=96.20 E-value=0.0039 Score=56.16 Aligned_cols=108 Identities=17% Similarity=0.173 Sum_probs=82.6
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCC---CcCCCCcCcHHHHHHHHHHHHhhCCCCcE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVT---TPQFYSASFLGDMQEVVAHVGSKYPKAHL 188 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~---~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i 188 (262)
++|+|+..-|+.......+ ...... .+-+-+.+.+|=++.|.-. ...+....-++|...+++.++..|+. +.
T Consensus 62 drPtV~~T~GY~~~~~p~r-~Ept~L---ld~NQl~vEhRfF~~SrP~p~DW~~Lti~QAA~D~Hri~~A~K~iY~~-kW 136 (448)
T PF05576_consen 62 DRPTVLYTEGYNVSTSPRR-SEPTQL---LDGNQLSVEHRFFGPSRPEPADWSYLTIWQAASDQHRIVQAFKPIYPG-KW 136 (448)
T ss_pred CCCeEEEecCcccccCccc-cchhHh---hccceEEEEEeeccCCCCCCCCcccccHhHhhHHHHHHHHHHHhhccC-Cc
Confidence 6899999999865433221 222222 2556788999999988422 12233355678999999999999987 79
Q ss_pred EEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChH
Q 024826 189 YAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLV 226 (262)
Q Consensus 189 ~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~ 226 (262)
+--|.|-||+.++.|=.-+|+. +++.|...+|.|..
T Consensus 137 ISTG~SKGGmTa~y~rrFyP~D--VD~tVaYVAP~~~~ 172 (448)
T PF05576_consen 137 ISTGGSKGGMTAVYYRRFYPDD--VDGTVAYVAPNDVV 172 (448)
T ss_pred eecCcCCCceeEEEEeeeCCCC--CCeeeeeecccccC
Confidence 9999999999999998899998 99999999998853
No 199
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=96.15 E-value=0.074 Score=49.14 Aligned_cols=119 Identities=21% Similarity=0.183 Sum_probs=68.8
Q ss_pred eEEEEcCC--CCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcH-HHHHHHH-------------HHH------hCCc
Q 024826 86 RECIRTKD--DGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDS-YVRHMLL-------------RAR------SKGW 143 (262)
Q Consensus 86 r~~i~~~d--g~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~-y~~~~~~-------------~l~------~~G~ 143 (262)
.-+++..+ +..+..+++... ..+...|+|+.+-|..|.|... .+..... .+. .+-.
T Consensus 39 sGy~~v~~~~~~~lfy~f~es~--~~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~a 116 (433)
T PLN03016 39 TGYIGIGEDENVQFFYYFIKSE--NNPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMA 116 (433)
T ss_pred EEEEEecCCCCeEEEEEEEecC--CCcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhcC
Confidence 34455543 344555555544 2455789999999998876421 1000000 010 1125
Q ss_pred eEEEEc-CCCCCCCCCCCcCCCCc--CcHHHHHHHHHHHHhhCC---CCcEEEEEEcHHHHHHHHHHhh
Q 024826 144 RVVVFN-SRGCGDSPVTTPQFYSA--SFLGDMQEVVAHVGSKYP---KAHLYAVGWSLGANILIRYLGH 206 (262)
Q Consensus 144 ~vv~~d-~rG~G~s~~~~~~~~~~--~~~~Dl~~~l~~l~~~~~---~~~i~lvG~SlGg~ia~~~a~~ 206 (262)
+++-+| .-|.|.|-...+..... ..++|+.+++...-+++| ..+++++|.|+||..+..+|.+
T Consensus 117 nllfiDqPvGtGfSy~~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~ 185 (433)
T PLN03016 117 NIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQE 185 (433)
T ss_pred cEEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHH
Confidence 678889 45888885433322222 233566666655555555 3589999999999877766654
No 200
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=96.10 E-value=0.024 Score=46.48 Aligned_cols=107 Identities=11% Similarity=0.145 Sum_probs=58.5
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCC---------CcCCCC--cCcHH-------HHH
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVT---------TPQFYS--ASFLG-------DMQ 173 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~---------~~~~~~--~~~~~-------Dl~ 173 (262)
...+||++||++.+.. .+ ..++..+.-.....+++..+=.-.+... ...... .+... -+.
T Consensus 2 h~atIi~LHglGDsg~-~~-~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~ 79 (206)
T KOG2112|consen 2 HTATIIFLHGLGDSGS-GW-AQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIA 79 (206)
T ss_pred ceEEEEEEecCCCCCc-cH-HHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHH
Confidence 3568999999966555 43 3444445445666666654421111000 000000 01111 222
Q ss_pred HHHHHHHhh-CCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCC
Q 024826 174 EVVAHVGSK-YPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNP 222 (262)
Q Consensus 174 ~~l~~l~~~-~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p 222 (262)
.+++..... -+..+|.+-|+|+||.+++..+-.++.. +.+.+..++-
T Consensus 80 ~Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~--l~G~~~~s~~ 127 (206)
T KOG2112|consen 80 NLIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKA--LGGIFALSGF 127 (206)
T ss_pred HHHHHHHHcCCCccceeEcccCchHHHHHHHHhccccc--cceeeccccc
Confidence 333322222 1345799999999999999999888765 6666655553
No 201
>PLN02209 serine carboxypeptidase
Probab=96.03 E-value=0.14 Score=47.32 Aligned_cols=135 Identities=21% Similarity=0.190 Sum_probs=77.4
Q ss_pred EEEEcCC--CCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHH----------------HHH------hCC
Q 024826 87 ECIRTKD--DGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLL----------------RAR------SKG 142 (262)
Q Consensus 87 ~~i~~~d--g~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~----------------~l~------~~G 142 (262)
.+++..+ +..+..+++... ..+...|+++.+-|..|.|.. ...+.+ .+. .+-
T Consensus 42 Gy~~v~~~~~~~lf~~f~es~--~~~~~~Pl~lWlnGGPG~SS~--~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~ 117 (437)
T PLN02209 42 GYIGIGEEENVQFFYYFIKSD--KNPQEDPLIIWLNGGPGCSCL--SGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKT 117 (437)
T ss_pred EEEEecCCCCeEEEEEEEecC--CCCCCCCEEEEECCCCcHHHh--hhHHHhcCCceeccCCCCCCcccceeCCCchhhc
Confidence 3444433 344555555544 245578999999999887742 111110 010 112
Q ss_pred ceEEEEc-CCCCCCCCCCCcCCCC--cCcHHHHHHHHHHHHhhCC---CCcEEEEEEcHHHHHHHHHHhhcCC-------
Q 024826 143 WRVVVFN-SRGCGDSPVTTPQFYS--ASFLGDMQEVVAHVGSKYP---KAHLYAVGWSLGANILIRYLGHESH------- 209 (262)
Q Consensus 143 ~~vv~~d-~rG~G~s~~~~~~~~~--~~~~~Dl~~~l~~l~~~~~---~~~i~lvG~SlGg~ia~~~a~~~~~------- 209 (262)
.+++-+| .-|.|.|-...+.... .+.++|+.++++..-+++| ..+++++|.|+||..+..++..--+
T Consensus 118 anllfiDqPvGtGfSy~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~ 197 (437)
T PLN02209 118 ANIIFLDQPVGSGFSYSKTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCN 197 (437)
T ss_pred CcEEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccC
Confidence 4678888 4588877433222221 2344666666665555665 3589999999999877666643211
Q ss_pred -CCCCceEEEEcCCcCh
Q 024826 210 -SCPLSGAVSLCNPFNL 225 (262)
Q Consensus 210 -~~~i~~~v~l~~p~~~ 225 (262)
.-.++++++.++..|.
T Consensus 198 ~~inl~Gi~igng~td~ 214 (437)
T PLN02209 198 PPINLQGYVLGNPITHI 214 (437)
T ss_pred CceeeeeEEecCcccCh
Confidence 1247776666665554
No 202
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=95.99 E-value=0.015 Score=47.96 Aligned_cols=85 Identities=18% Similarity=0.080 Sum_probs=54.3
Q ss_pred hCCceEEEEcCCCCCCCCCC-CcC----CCCcCcHHHHHHHHHHHHhhCC-CCcEEEEEEcHHHHHHHHHHhhcCCC---
Q 024826 140 SKGWRVVVFNSRGCGDSPVT-TPQ----FYSASFLGDMQEVVAHVGSKYP-KAHLYAVGWSLGANILIRYLGHESHS--- 210 (262)
Q Consensus 140 ~~G~~vv~~d~rG~G~s~~~-~~~----~~~~~~~~Dl~~~l~~l~~~~~-~~~i~lvG~SlGg~ia~~~a~~~~~~--- 210 (262)
..-.+|+++-||-....... ... ....--..|+.++.++..++++ .++|+|+|||.|+.++.+++.++-+.
T Consensus 43 ~~~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~~~~~pl 122 (207)
T PF11288_consen 43 NGVCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKEEIAGDPL 122 (207)
T ss_pred hcCCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHHHhcCchH
Confidence 34568889888865432221 111 1112224688888877776664 45999999999999999999986322
Q ss_pred -CCCceEEEEcCCcC
Q 024826 211 -CPLSGAVSLCNPFN 224 (262)
Q Consensus 211 -~~i~~~v~l~~p~~ 224 (262)
.++-++-+++-+..
T Consensus 123 ~~rLVAAYliG~~v~ 137 (207)
T PF11288_consen 123 RKRLVAAYLIGYPVT 137 (207)
T ss_pred HhhhheeeecCcccc
Confidence 24555555655543
No 203
>PLN02934 triacylglycerol lipase
Probab=95.95 E-value=0.02 Score=53.14 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhc---CCC---CCCceEEEEcCCcC
Q 024826 171 DMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHE---SHS---CPLSGAVSLCNPFN 224 (262)
Q Consensus 171 Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~---~~~---~~i~~~v~l~~p~~ 224 (262)
.+...++.+.+++|+.++++.|||+||.+|..++... .+. ..+..+...++|--
T Consensus 306 ~v~~~lk~ll~~~p~~kIvVTGHSLGGALAtLaA~~L~l~~~~~~l~~~~~vYTFGsPRV 365 (515)
T PLN02934 306 AVRSKLKSLLKEHKNAKFVVTGHSLGGALAILFPTVLVLQEETEVMKRLLGVYTFGQPRI 365 (515)
T ss_pred HHHHHHHHHHHHCCCCeEEEeccccHHHHHHHHHHHHHHhcccccccCceEEEEeCCCCc
Confidence 4677777888889999999999999999999886431 111 11345667777643
No 204
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=95.82 E-value=0.13 Score=47.61 Aligned_cols=117 Identities=14% Similarity=0.185 Sum_probs=72.1
Q ss_pred ceEEEEcC--CCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHHHHHHHH----Hh-C-------------Cce
Q 024826 85 KRECIRTK--DDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVRHMLLRA----RS-K-------------GWR 144 (262)
Q Consensus 85 ~r~~i~~~--dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l----~~-~-------------G~~ 144 (262)
..-++... ++..+.++++..+ ..+..+|+||.+-|..|.|.- ..+..++ .+ . --+
T Consensus 45 ysGYv~v~~~~~~~LFYwf~eS~--~~P~~dPlvLWLnGGPGCSSl---~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aN 119 (454)
T KOG1282|consen 45 YSGYVTVNESEGRQLFYWFFESE--NNPETDPLVLWLNGGPGCSSL---GGLFEENGPFRVKYNGKTLYLNPYSWNKEAN 119 (454)
T ss_pred ccceEECCCCCCceEEEEEEEcc--CCCCCCCEEEEeCCCCCccch---hhhhhhcCCeEEcCCCCcceeCCcccccccc
Confidence 34456665 4667777777665 345678999999999998752 2322221 01 1 124
Q ss_pred EEEEcCC-CCCCCCCCCcC-C--CCcCcHHHHHHHHHHHHhhCC---CCcEEEEEEcHHHHHHHHHHhh
Q 024826 145 VVVFNSR-GCGDSPVTTPQ-F--YSASFLGDMQEVVAHVGSKYP---KAHLYAVGWSLGANILIRYLGH 206 (262)
Q Consensus 145 vv~~d~r-G~G~s~~~~~~-~--~~~~~~~Dl~~~l~~l~~~~~---~~~i~lvG~SlGg~ia~~~a~~ 206 (262)
++-+|.| |.|.|=..++. . ...+.++|..+++...-+++| ..++++.|-|++|..+-.+|.+
T Consensus 120 iLfLd~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~ 188 (454)
T KOG1282|consen 120 ILFLDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQE 188 (454)
T ss_pred EEEEecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHH
Confidence 6667765 66766322221 1 224456788776655555665 4589999999999766665543
No 205
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=95.67 E-value=0.12 Score=42.86 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHh--hcC----CCCCCceEEEEcC
Q 024826 169 LGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLG--HES----HSCPLSGAVSLCN 221 (262)
Q Consensus 169 ~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~--~~~----~~~~i~~~v~l~~ 221 (262)
..-+..+.++++++.|.+ .++|+|-|+.++...++ +.+ ...+++-+|++++
T Consensus 89 eesl~yl~~~i~enGPFD--GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SG 145 (230)
T KOG2551|consen 89 EESLEYLEDYIKENGPFD--GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISG 145 (230)
T ss_pred HHHHHHHHHHHHHhCCCc--cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEec
Confidence 334777778888876643 58999999999999888 222 1235676666665
No 206
>PLN02408 phospholipase A1
Probab=95.67 E-value=0.024 Score=50.80 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhhCCCC--cEEEEEEcHHHHHHHHHHhhcCCC---CCCceEEEEcCCc
Q 024826 169 LGDMQEVVAHVGSKYPKA--HLYAVGWSLGANILIRYLGHESHS---CPLSGAVSLCNPF 223 (262)
Q Consensus 169 ~~Dl~~~l~~l~~~~~~~--~i~lvG~SlGg~ia~~~a~~~~~~---~~i~~~v~l~~p~ 223 (262)
.+++.+.++.+.++|++. +|.+.||||||.+|+..+...... .+.-.++..++|-
T Consensus 181 r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~dl~~~~~~~~~V~v~tFGsPR 240 (365)
T PLN02408 181 QEMVREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYDIKTTFKRAPMVTVISFGGPR 240 (365)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Confidence 455666777777778764 599999999999999887764322 1122356666654
No 207
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=95.64 E-value=0.016 Score=54.45 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=67.6
Q ss_pred CCcEEEEECCCC-CCCCcHHHHHHHHHHHhCC--ceEEEEcCCC-CCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCc
Q 024826 112 DSPVLILMPGLT-GGSEDSYVRHMLLRARSKG--WRVVVFNSRG-CGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAH 187 (262)
Q Consensus 112 ~~p~vv~lHG~~-g~~~~~y~~~~~~~l~~~G--~~vv~~d~rG-~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~ 187 (262)
..|++++.||.. ....+.+.+.+-..+...| ..+..||++- +|+-... .. ...++.-.+..+..+..+|+..+
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~igG~nI~-h~--ae~~vSf~r~kvlei~gefpha~ 251 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIGGANIK-HA--AEYSVSFDRYKVLEITGEFPHAP 251 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCCCcchH-HH--HHHHHHHhhhhhhhhhccCCCCc
Confidence 578999999976 2223333345555555445 3455677653 2321100 00 01112222333444555788889
Q ss_pred EEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHHH
Q 024826 188 LYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVIA 228 (262)
Q Consensus 188 i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~ 228 (262)
|+++|.|||+.++......+.+. .|+++|+++=|++-...
T Consensus 252 IiLvGrsmGAlVachVSpsnsdv-~V~~vVCigypl~~vdg 291 (784)
T KOG3253|consen 252 IILVGRSMGALVACHVSPSNSDV-EVDAVVCIGYPLDTVDG 291 (784)
T ss_pred eEEEecccCceeeEEeccccCCc-eEEEEEEecccccCCCc
Confidence 99999999988888877766543 38888888888875443
No 208
>PLN02571 triacylglycerol lipase
Probab=95.43 E-value=0.031 Score=50.89 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhCCCC--cEEEEEEcHHHHHHHHHHhh
Q 024826 169 LGDMQEVVAHVGSKYPKA--HLYAVGWSLGANILIRYLGH 206 (262)
Q Consensus 169 ~~Dl~~~l~~l~~~~~~~--~i~lvG~SlGg~ia~~~a~~ 206 (262)
.+++.+.++.+.++|++. +|++.||||||.+|+..|.+
T Consensus 207 r~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 207 RDQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 345666666666677654 79999999999999988865
No 209
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=95.21 E-value=0.063 Score=50.48 Aligned_cols=102 Identities=14% Similarity=0.121 Sum_probs=65.9
Q ss_pred CCCcEEEEECCCC-----CCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhC--
Q 024826 111 PDSPVLILMPGLT-----GGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKY-- 183 (262)
Q Consensus 111 ~~~p~vv~lHG~~-----g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~-- 183 (262)
..+-+|+.|||.+ .-+++.|++.+ ....|+.++.+||--. |+.-...-.+++..+..|+.+.-
T Consensus 394 ~S~sli~HcHGGGfVAqsSkSHE~YLr~W---a~aL~cPiiSVdYSLA-------PEaPFPRaleEv~fAYcW~inn~al 463 (880)
T KOG4388|consen 394 RSRSLIVHCHGGGFVAQSSKSHEPYLRSW---AQALGCPIISVDYSLA-------PEAPFPRALEEVFFAYCWAINNCAL 463 (880)
T ss_pred CCceEEEEecCCceeeeccccccHHHHHH---HHHhCCCeEEeeeccC-------CCCCCCcHHHHHHHHHHHHhcCHHH
Confidence 3566899999976 45567777654 4556999999998432 22223445677777777776531
Q ss_pred ---CCCcEEEEEEcHHHHHHHHHHhh---cCCCCCCceEEEEcCCc
Q 024826 184 ---PKAHLYAVGWSLGANILIRYLGH---ESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 184 ---~~~~i~lvG~SlGg~ia~~~a~~---~~~~~~i~~~v~l~~p~ 223 (262)
-..+|+++|-|.||++....+.+ ++-+ .-+++++.-+|+
T Consensus 464 lG~TgEriv~aGDSAGgNL~~~VaLr~i~~gvR-vPDGl~laY~pt 508 (880)
T KOG4388|consen 464 LGSTGERIVLAGDSAGGNLCFTVALRAIAYGVR-VPDGLMLAYPPT 508 (880)
T ss_pred hCcccceEEEeccCCCcceeehhHHHHHHhCCC-CCCceEEecChh
Confidence 13489999999999976544432 3332 245666555554
No 210
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=95.20 E-value=0.052 Score=48.43 Aligned_cols=68 Identities=19% Similarity=0.295 Sum_probs=49.6
Q ss_pred CCCCcEEEEEEcHHHHHHHHHHhhcCCC---CCCceEEEEcCCcChHHHH-HHH--------HhccchhhHHHHHHHHHH
Q 024826 183 YPKAHLYAVGWSLGANILIRYLGHESHS---CPLSGAVSLCNPFNLVIAD-QDF--------RMLFSLKTWVVNLIFRWQ 250 (262)
Q Consensus 183 ~~~~~i~lvG~SlGg~ia~~~a~~~~~~---~~i~~~v~l~~p~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~ 250 (262)
.+++|+.++|||+|+.+....+.+-.++ .-|+.+++++.|....... ..+ -+.++.-.|++.++++..
T Consensus 217 ~G~RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv~~~~~~W~~~r~vVsGr~vN~YS~~D~vL~~lyr~~ 296 (345)
T PF05277_consen 217 QGERPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPVPSDPEEWRKIRSVVSGRLVNVYSENDWVLGFLYRAS 296 (345)
T ss_pred CCCCceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEecCCCCCCHHHHHHHHHHccCeEEEEecCcHHHHHHHHHhc
Confidence 4777999999999999999888776554 3478999999988754322 122 235556688888888754
No 211
>PLN02324 triacylglycerol lipase
Probab=94.87 E-value=0.058 Score=49.09 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHhhCCCC--cEEEEEEcHHHHHHHHHHhh
Q 024826 168 FLGDMQEVVAHVGSKYPKA--HLYAVGWSLGANILIRYLGH 206 (262)
Q Consensus 168 ~~~Dl~~~l~~l~~~~~~~--~i~lvG~SlGg~ia~~~a~~ 206 (262)
..+.+.+.|+.+..+|++. +|.+.||||||.+|+..|.+
T Consensus 195 areqVl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~d 235 (415)
T PLN02324 195 AQEQVQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAAD 235 (415)
T ss_pred HHHHHHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHHH
Confidence 3445666677777778763 69999999999999988764
No 212
>PLN02310 triacylglycerol lipase
Probab=94.84 E-value=0.071 Score=48.45 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhCC----CCcEEEEEEcHHHHHHHHHHhhcCC---CCCCceEEEEcCCcC
Q 024826 170 GDMQEVVAHVGSKYP----KAHLYAVGWSLGANILIRYLGHESH---SCPLSGAVSLCNPFN 224 (262)
Q Consensus 170 ~Dl~~~l~~l~~~~~----~~~i~lvG~SlGg~ia~~~a~~~~~---~~~i~~~v~l~~p~~ 224 (262)
+.+.+.++.+...|+ ..+|.+.||||||.+|+..+.+... ..++ .++..++|--
T Consensus 189 ~qVl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~dl~~~~~~~~v-~vyTFGsPRV 249 (405)
T PLN02310 189 EQVMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAYEAATTIPDLFV-SVISFGAPRV 249 (405)
T ss_pred HHHHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHHHHHHhCcCcce-eEEEecCCCc
Confidence 345555555555443 3489999999999999987754321 1123 3677777653
No 213
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=94.75 E-value=0.053 Score=48.80 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=45.2
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcC-CCC--cCcHHHHHHHHHHHHhhCCCCcE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQ-FYS--ASFLGDMQEVVAHVGSKYPKAHL 188 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~-~~~--~~~~~Dl~~~l~~l~~~~~~~~i 188 (262)
+.-.||+.||+.| ....|+...+....+.--.. ++..+|+-+.-..+.. ... ....+++.+.+.+.. -.+|
T Consensus 79 ~~HLvVlthGi~~-~~~~~~~~~~~~~~kk~p~~-~iv~~g~~~~~~~T~~Gv~~lG~Rla~~~~e~~~~~s----i~kI 152 (405)
T KOG4372|consen 79 PKHLVVLTHGLHG-ADMEYWKEKIEQMTKKMPDK-LIVVRGKMNNMCQTFDGVDVLGERLAEEVKETLYDYS----IEKI 152 (405)
T ss_pred CceEEEecccccc-ccHHHHHHHHHhhhcCCCcc-eEeeeccccchhhccccceeeecccHHHHhhhhhccc----ccee
Confidence 4568899999988 33355555555554432222 3344444333222221 111 233344333333332 2389
Q ss_pred EEEEEcHHHHHHHH
Q 024826 189 YAVGWSLGANILIR 202 (262)
Q Consensus 189 ~lvG~SlGg~ia~~ 202 (262)
-.+|||+||.++..
T Consensus 153 SfvghSLGGLvar~ 166 (405)
T KOG4372|consen 153 SFVGHSLGGLVARY 166 (405)
T ss_pred eeeeeecCCeeeeE
Confidence 99999999977653
No 214
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=94.72 E-value=0.055 Score=48.28 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=43.5
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCC----CCCceEEEEcCCc
Q 024826 164 YSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHS----CPLSGAVSLCNPF 223 (262)
Q Consensus 164 ~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~----~~i~~~v~l~~p~ 223 (262)
+...|...+.+.++.+...+|+-+|++.||||||.+|...+..--.. +...+++..+.|=
T Consensus 149 ~~~~~~~~~~~~~~~L~~~~~~~~i~vTGHSLGgAlA~laa~~i~~~~~~~~~~v~v~tFG~PR 212 (336)
T KOG4569|consen 149 YTSLWNSGLDAELRRLIELYPNYSIWVTGHSLGGALASLAALDLVKNGLKTSSPVKVYTFGQPR 212 (336)
T ss_pred hccccHHHHHHHHHHHHHhcCCcEEEEecCChHHHHHHHHHHHHHHcCCCCCCceEEEEecCCC
Confidence 33445577888888888889988999999999999998777542211 1234667777774
No 215
>PLN02719 triacylglycerol lipase
Probab=94.69 E-value=0.067 Score=49.80 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHHhhCCC-----CcEEEEEEcHHHHHHHHHHhh
Q 024826 168 FLGDMQEVVAHVGSKYPK-----AHLYAVGWSLGANILIRYLGH 206 (262)
Q Consensus 168 ~~~Dl~~~l~~l~~~~~~-----~~i~lvG~SlGg~ia~~~a~~ 206 (262)
..+++.+.++.+.++|++ .+|.+.||||||.+|+..|.+
T Consensus 275 aReQVl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~D 318 (518)
T PLN02719 275 AREQVLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAYD 318 (518)
T ss_pred HHHHHHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHHH
Confidence 345667777777777764 389999999999999987754
No 216
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=94.19 E-value=0.44 Score=40.10 Aligned_cols=102 Identities=12% Similarity=0.122 Sum_probs=62.3
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCC--CcEEEEEE
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPK--AHLYAVGW 193 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~--~~i~lvG~ 193 (262)
+|++=||.|... ..+...+....+.|++++++-.+-..... +. .....-+..+++.+...... .++.+-.+
T Consensus 2 lvvl~gW~gA~~-~hl~KY~~~Y~~~g~~il~~~~~~~~~~~---~~---~~~~~~~~~l~~~l~~~~~~~~~~il~H~F 74 (240)
T PF05705_consen 2 LVVLLGWMGAKP-KHLAKYSDLYQDPGFDILLVTSPPADFFW---PS---KRLAPAADKLLELLSDSQSASPPPILFHSF 74 (240)
T ss_pred EEEEEeCCCCCH-HHHHHHHHHHHhcCCeEEEEeCCHHHHee---ec---cchHHHHHHHHHHhhhhccCCCCCEEEEEE
Confidence 567779986554 55667777777899999998654221110 11 22333334455555543222 28999999
Q ss_pred cHHHHHHHHHHhh---c----CCC-CCCceEEEEcCCcC
Q 024826 194 SLGANILIRYLGH---E----SHS-CPLSGAVSLCNPFN 224 (262)
Q Consensus 194 SlGg~ia~~~a~~---~----~~~-~~i~~~v~l~~p~~ 224 (262)
|.||...+..+.+ . ... ..+++.|.-|+|-.
T Consensus 75 SnGG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~ 113 (240)
T PF05705_consen 75 SNGGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGI 113 (240)
T ss_pred ECchHHHHHHHHHHHHhcccccccccccceeEEeCCCCc
Confidence 9988887766552 1 111 23888888888744
No 217
>PLN02802 triacylglycerol lipase
Probab=94.19 E-value=0.079 Score=49.26 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhCCCC--cEEEEEEcHHHHHHHHHHhhcCCC----CCCceEEEEcCCc
Q 024826 170 GDMQEVVAHVGSKYPKA--HLYAVGWSLGANILIRYLGHESHS----CPLSGAVSLCNPF 223 (262)
Q Consensus 170 ~Dl~~~l~~l~~~~~~~--~i~lvG~SlGg~ia~~~a~~~~~~----~~i~~~v~l~~p~ 223 (262)
+++.+-++.+.++|++. +|++.||||||.+++..+.+.... .+|. ++..++|-
T Consensus 312 eqVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~dL~~~~~~~~pV~-vyTFGsPR 370 (509)
T PLN02802 312 ESVVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADELATCVPAAPPVA-VFSFGGPR 370 (509)
T ss_pred HHHHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHHHHHhCCCCCceE-EEEcCCCC
Confidence 45566666666677653 799999999999999877654322 1233 56666653
No 218
>PLN02847 triacylglycerol lipase
Probab=94.10 E-value=0.13 Score=48.84 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhh
Q 024826 172 MQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGH 206 (262)
Q Consensus 172 l~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~ 206 (262)
+...+..+...+|+-++.++||||||.+|..++..
T Consensus 237 i~~~L~kal~~~PdYkLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 237 STPCLLKALDEYPDFKIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred HHHHHHHHHHHCCCCeEEEeccChHHHHHHHHHHH
Confidence 33444555567888899999999999999876654
No 219
>PLN02761 lipase class 3 family protein
Probab=94.07 E-value=0.11 Score=48.43 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHhhCC------CCcEEEEEEcHHHHHHHHHHhh
Q 024826 168 FLGDMQEVVAHVGSKYP------KAHLYAVGWSLGANILIRYLGH 206 (262)
Q Consensus 168 ~~~Dl~~~l~~l~~~~~------~~~i~lvG~SlGg~ia~~~a~~ 206 (262)
..+++.+.|+.+...|+ ..+|.+.||||||.+|+..|.+
T Consensus 270 aR~qVl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAtLaA~D 314 (527)
T PLN02761 270 AREQVLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLALVSAYD 314 (527)
T ss_pred HHHHHHHHHHHHHHhcccccCCCCceEEEeccchHHHHHHHHHHH
Confidence 34566667777777773 3479999999999999977753
No 220
>PLN03037 lipase class 3 family protein; Provisional
Probab=94.04 E-value=0.07 Score=49.76 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhCC----CCcEEEEEEcHHHHHHHHHHhhc----CCCCCCceEEEEcCCc
Q 024826 171 DMQEVVAHVGSKYP----KAHLYAVGWSLGANILIRYLGHE----SHSCPLSGAVSLCNPF 223 (262)
Q Consensus 171 Dl~~~l~~l~~~~~----~~~i~lvG~SlGg~ia~~~a~~~----~~~~~i~~~v~l~~p~ 223 (262)
.+.+.|..+...|+ +.+|.+.||||||.+|+..|.+. +...++. ++..++|-
T Consensus 299 QVl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~DIa~~~p~~~~Vt-vyTFGsPR 358 (525)
T PLN03037 299 QVMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYEAARSVPALSNIS-VISFGAPR 358 (525)
T ss_pred HHHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHHHHHhCCCCCCee-EEEecCCC
Confidence 34444444544443 34799999999999999877543 2211243 45666553
No 221
>PLN02753 triacylglycerol lipase
Probab=93.92 E-value=0.095 Score=48.95 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhhCC-----CCcEEEEEEcHHHHHHHHHHhh
Q 024826 169 LGDMQEVVAHVGSKYP-----KAHLYAVGWSLGANILIRYLGH 206 (262)
Q Consensus 169 ~~Dl~~~l~~l~~~~~-----~~~i~lvG~SlGg~ia~~~a~~ 206 (262)
.+++.+.|+.+..+|+ +.+|.+.||||||.+|+..|..
T Consensus 290 reQVl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~D 332 (531)
T PLN02753 290 REQILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAYD 332 (531)
T ss_pred HHHHHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHHH
Confidence 4556666777776664 3589999999999999988753
No 222
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=93.74 E-value=0.29 Score=45.43 Aligned_cols=98 Identities=18% Similarity=0.179 Sum_probs=63.6
Q ss_pred CCCCCcEEEEECCCCCCCCcHHHHHHHHHH----HhCC---------------ceEEEEc-CCCCCCCCC--CCcCCCCc
Q 024826 109 LPPDSPVLILMPGLTGGSEDSYVRHMLLRA----RSKG---------------WRVVVFN-SRGCGDSPV--TTPQFYSA 166 (262)
Q Consensus 109 ~~~~~p~vv~lHG~~g~~~~~y~~~~~~~l----~~~G---------------~~vv~~d-~rG~G~s~~--~~~~~~~~ 166 (262)
.+.++|+++.+-|..|.+.. + .+.-++ ...+ -+.+-+| .-|.|.|-. ........
T Consensus 97 dp~~rPvi~wlNGGPGcSS~-~--g~l~elGP~rI~~~~~P~~~~NP~SW~~~adLvFiDqPvGTGfS~a~~~e~~~d~~ 173 (498)
T COG2939 97 DPANRPVIFWLNGGPGCSSV-T--GLLGELGPKRIQSGTSPSYPDNPGSWLDFADLVFIDQPVGTGFSRALGDEKKKDFE 173 (498)
T ss_pred CCCCCceEEEecCCCChHhh-h--hhhhhcCCeeeeCCCCCCCCCCccccccCCceEEEecCcccCcccccccccccchh
Confidence 34578999999999997752 1 211111 0111 2467778 557777753 22222335
Q ss_pred CcHHHHHHHHHHHHhhCC-----CCcEEEEEEcHHHHHHHHHHhhcCC
Q 024826 167 SFLGDMQEVVAHVGSKYP-----KAHLYAVGWSLGANILIRYLGHESH 209 (262)
Q Consensus 167 ~~~~Dl~~~l~~l~~~~~-----~~~i~lvG~SlGg~ia~~~a~~~~~ 209 (262)
+..+|+..+.+.+...++ .++.+++|-|+||.-+..+|.+--+
T Consensus 174 ~~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L~~ 221 (498)
T COG2939 174 GAGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHELLE 221 (498)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHHHH
Confidence 667788888888776554 2489999999999998888875433
No 223
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=92.95 E-value=0.39 Score=42.51 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=44.1
Q ss_pred eEEEEcCC-CCCCCCCCCcCCCC--cCcHHHHHHHHHHHHhhCC---CCcEEEEEEcHHHHHHHHHHhh
Q 024826 144 RVVVFNSR-GCGDSPVTTPQFYS--ASFLGDMQEVVAHVGSKYP---KAHLYAVGWSLGANILIRYLGH 206 (262)
Q Consensus 144 ~vv~~d~r-G~G~s~~~~~~~~~--~~~~~Dl~~~l~~l~~~~~---~~~i~lvG~SlGg~ia~~~a~~ 206 (262)
+++-+|.| |.|.|-...+..+. ...++|+..+++..-+++| ..++++.|-|.||..+-.++.+
T Consensus 3 NvLfiDqPvGvGfSy~~~~~~~~~d~~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~ 71 (319)
T PLN02213 3 NIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQE 71 (319)
T ss_pred cEEEecCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHH
Confidence 67889988 88888543332222 2345777777776666665 4689999999999877766654
No 224
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=92.57 E-value=1.1 Score=39.52 Aligned_cols=97 Identities=16% Similarity=0.274 Sum_probs=63.5
Q ss_pred CCCcEEEEECCCCC---CCCcHHHHHHHHHHHh-CCceEEEEcCCCCCCCCCC----------C--c-CCCCcCcHHHHH
Q 024826 111 PDSPVLILMPGLTG---GSEDSYVRHMLLRARS-KGWRVVVFNSRGCGDSPVT----------T--P-QFYSASFLGDMQ 173 (262)
Q Consensus 111 ~~~p~vv~lHG~~g---~~~~~y~~~~~~~l~~-~G~~vv~~d~rG~G~s~~~----------~--~-~~~~~~~~~Dl~ 173 (262)
+.+-+|+++-|... ..--..+..+...+.+ .+-++++.--.|.|.-... . . ..+--+..+.+.
T Consensus 29 s~k~lV~CfDGT~nrfg~qp~TNVv~Ly~sl~r~d~~~qv~yYd~GVGt~Gfdavvdvrrrl~~~~~gsmFg~gL~~nI~ 108 (423)
T COG3673 29 SMKRLVFCFDGTWNRFGAQPPTNVVLLYASLQRADGVTQVIYYDEGVGTGGFDAVVDVRRRLEKLSGGSMFGQGLVQNIR 108 (423)
T ss_pred CcceEEEEecCchhhcCCCCcchHHHHHHHHhcCCCceEEEEecCCcccccchhhHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 35677888888542 2221223444444544 5778888877888743211 0 0 122245577899
Q ss_pred HHHHHHHhhC-CCCcEEEEEEcHHHHHHHHHHhhc
Q 024826 174 EVVAHVGSKY-PKAHLYAVGWSLGANILIRYLGHE 207 (262)
Q Consensus 174 ~~l~~l~~~~-~~~~i~lvG~SlGg~ia~~~a~~~ 207 (262)
.+..++.+.| |.+.|+++|||-|+.++-.+|+.-
T Consensus 109 ~AYrFL~~~yepGD~Iy~FGFSRGAf~aRVlagmi 143 (423)
T COG3673 109 EAYRFLIFNYEPGDEIYAFGFSRGAFSARVLAGMI 143 (423)
T ss_pred HHHHHHHHhcCCCCeEEEeeccchhHHHHHHHHHH
Confidence 9999999887 566899999999999998887753
No 225
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=92.35 E-value=1.3 Score=37.21 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=45.6
Q ss_pred CceEEEEcCCCCCCC-CCCCcCCCCcCcHHHHHHHHHHHHhhC-CCCcEEEEEEcHHHHHHHHHHhhcCCC----CCCce
Q 024826 142 GWRVVVFNSRGCGDS-PVTTPQFYSASFLGDMQEVVAHVGSKY-PKAHLYAVGWSLGANILIRYLGHESHS----CPLSG 215 (262)
Q Consensus 142 G~~vv~~d~rG~G~s-~~~~~~~~~~~~~~Dl~~~l~~l~~~~-~~~~i~lvG~SlGg~ia~~~a~~~~~~----~~i~~ 215 (262)
|+.+..++++..-.- .......+.....+-+..+.+.+.... ...+++++|+|.|+.++...+.+..+. ...-.
T Consensus 2 ~~~~~~V~YPa~f~P~~g~~~~t~~~Sv~~G~~~L~~ai~~~~~~~~~vvV~GySQGA~Va~~~~~~l~~~~~~~~~~l~ 81 (225)
T PF08237_consen 2 GYNVVAVDYPASFWPVTGIGSPTYDESVAEGVANLDAAIRAAIAAGGPVVVFGYSQGAVVASNVLRRLAADGDPPPDDLS 81 (225)
T ss_pred CcceEEecCCchhcCcCCCCCCccchHHHHHHHHHHHHHHhhccCCCCEEEEEECHHHHHHHHHHHHHHhcCCCCcCceE
Confidence 678888888863111 000011111222222222222333211 455899999999999999888775432 12335
Q ss_pred EEEEcCCcC
Q 024826 216 AVSLCNPFN 224 (262)
Q Consensus 216 ~v~l~~p~~ 224 (262)
.|+++.|..
T Consensus 82 fVl~gnP~r 90 (225)
T PF08237_consen 82 FVLIGNPRR 90 (225)
T ss_pred EEEecCCCC
Confidence 788888754
No 226
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.09 E-value=0.18 Score=43.12 Aligned_cols=108 Identities=11% Similarity=0.150 Sum_probs=63.6
Q ss_pred CeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCcHHHH--HHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHH
Q 024826 95 GSVALDWISGDHQLLPPDSPVLILMPGLTGGSEDSYVR--HMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDM 172 (262)
Q Consensus 95 ~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~~y~~--~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl 172 (262)
++-.+.|+.|+. ..++-+.+-|-+.++ |.+ .+...+.++|...+++..+-+|...-...-...-+++.|+
T Consensus 100 ~~A~~~~liPQK-----~~~KOG~~a~tgdh~---y~rr~~L~~p~~k~~i~tmvle~pfYgqr~p~~q~~~~Le~vtDl 171 (371)
T KOG1551|consen 100 RTARVAWLIPQK-----MADLCLSWALTGDHV---YTRRLVLSKPINKREIATMVLEKPFYGQRVPEEQIIHMLEYVTDL 171 (371)
T ss_pred cceeeeeecccC-----cCCeeEEEeecCCce---eEeeeeecCchhhhcchheeeecccccccCCHHHHHHHHHHHHHH
Confidence 345556666653 445555555544333 223 2456678899999999999888654211111112334443
Q ss_pred ----HHHHHHHHhhC------CCCcEEEEEEcHHHHHHHHHHhhcCCC
Q 024826 173 ----QEVVAHVGSKY------PKAHLYAVGWSLGANILIRYLGHESHS 210 (262)
Q Consensus 173 ----~~~l~~l~~~~------~~~~i~lvG~SlGg~ia~~~a~~~~~~ 210 (262)
++.|+...+.+ +-.++.++|.||||.++......++..
T Consensus 172 f~mG~A~I~E~~~lf~Ws~~~g~g~~~~~g~Smgg~~a~~vgS~~q~P 219 (371)
T KOG1551|consen 172 FKMGRATIQEFVKLFTWSSADGLGNLNLVGRSMGGDIANQVGSLHQKP 219 (371)
T ss_pred HHhhHHHHHHHHHhcccccccCcccceeeeeecccHHHHhhcccCCCC
Confidence 23344443333 345899999999999997776655543
No 227
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=92.01 E-value=1.4 Score=38.19 Aligned_cols=94 Identities=15% Similarity=0.297 Sum_probs=57.4
Q ss_pred cEEEEECCCCCCCCc----HHHHHHHHHH-HhCCceEEEEcCCCCCCC--------CCC----CcCCCCcCcHHHHHHHH
Q 024826 114 PVLILMPGLTGGSED----SYVRHMLLRA-RSKGWRVVVFNSRGCGDS--------PVT----TPQFYSASFLGDMQEVV 176 (262)
Q Consensus 114 p~vv~lHG~~g~~~~----~y~~~~~~~l-~~~G~~vv~~d~rG~G~s--------~~~----~~~~~~~~~~~Dl~~~l 176 (262)
.+||++=|...+... +-+..+...+ ...+-..+++-.+|.|.. ... .....-.+..+.+..+.
T Consensus 2 ~iv~~fDGT~n~~~~~~~~TNV~rL~~~~~~~~~~~q~~~Y~~GvGt~~~~~~~~~~~~~~~~~~~a~g~g~~~~I~~ay 81 (277)
T PF09994_consen 2 RIVVFFDGTGNNPDNDPPPTNVARLYDAYKDRDGERQIVYYIPGVGTEFGSEFGESGRALDRLLGGAFGWGIEARIRDAY 81 (277)
T ss_pred cEEEEecCCCCCCCCCccccHHHHHHHHhhccCCCceeEEEecccccccccccccccchhhhccCchhhcchHHHHHHHH
Confidence 456777776543332 2234444444 222345566777788761 110 01111134566788888
Q ss_pred HHHHhhC-CCCcEEEEEEcHHHHHHHHHHhhc
Q 024826 177 AHVGSKY-PKAHLYAVGWSLGANILIRYLGHE 207 (262)
Q Consensus 177 ~~l~~~~-~~~~i~lvG~SlGg~ia~~~a~~~ 207 (262)
.++.+.| +...|+++|+|-||.++-.++..-
T Consensus 82 ~~l~~~~~~gd~I~lfGFSRGA~~AR~~a~~i 113 (277)
T PF09994_consen 82 RFLSKNYEPGDRIYLFGFSRGAYTARAFANMI 113 (277)
T ss_pred HHHHhccCCcceEEEEecCccHHHHHHHHHHH
Confidence 8886665 556899999999999998888764
No 228
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.81 E-value=0.43 Score=38.22 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=41.1
Q ss_pred HHHHHHHHhh-CCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChHH
Q 024826 173 QEVVAHVGSK-YPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLVI 227 (262)
Q Consensus 173 ~~~l~~l~~~-~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~ 227 (262)
++.-.++.++ .|. +..+-|-||||..++++.-++|+. ..++|+++..+|...
T Consensus 88 ~AyerYv~eEalpg-s~~~sgcsmGayhA~nfvfrhP~l--ftkvialSGvYdard 140 (227)
T COG4947 88 RAYERYVIEEALPG-STIVSGCSMGAYHAANFVFRHPHL--FTKVIALSGVYDARD 140 (227)
T ss_pred HHHHHHHHHhhcCC-CccccccchhhhhhhhhheeChhH--hhhheeecceeeHHH
Confidence 3444555543 344 466889999999999999999998 899999999998764
No 229
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=90.17 E-value=2.4 Score=34.27 Aligned_cols=39 Identities=18% Similarity=0.409 Sum_probs=33.6
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNS 150 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~ 150 (262)
.+|.+|.+-|+.|+..+..-..+...|.+.|++++++|-
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDG 59 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDG 59 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 578899999999888776666777888999999999995
No 230
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.79 E-value=0.61 Score=43.42 Aligned_cols=69 Identities=19% Similarity=0.272 Sum_probs=47.9
Q ss_pred CCCCcEEEEEEcHHHHHHHHHHhhcCCC---CCCceEEEEcCCcChHHHHH----H-----HHhccchhhHHHHHHHHHH
Q 024826 183 YPKAHLYAVGWSLGANILIRYLGHESHS---CPLSGAVSLCNPFNLVIADQ----D-----FRMLFSLKTWVVNLIFRWQ 250 (262)
Q Consensus 183 ~~~~~i~lvG~SlGg~ia~~~a~~~~~~---~~i~~~v~l~~p~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~ 250 (262)
.+++||.++|||+|+.+...++.+-.++ .-|..++++++|.......- . +-+++.-..|++...++-.
T Consensus 444 qG~RPVTLVGFSLGARvIf~CL~~Lakkke~~iIEnViL~GaPv~~k~~~w~k~r~vVsGRFVNgYs~nDW~L~~lfRa~ 523 (633)
T KOG2385|consen 444 QGNRPVTLVGFSLGARVIFECLLELAKKKEVGIIENVILFGAPVPTKAKLWLKARSVVSGRFVNGYSTNDWTLGYLFRAS 523 (633)
T ss_pred cCCCceeEeeeccchHHHHHHHHHHhhcccccceeeeeeccCCccCCHHHHHHHHhheecceeeeeecchHHHHHHHHHh
Confidence 4678999999999999998777643322 34888999999887554321 1 2235555578888877754
Q ss_pred h
Q 024826 251 L 251 (262)
Q Consensus 251 ~ 251 (262)
.
T Consensus 524 s 524 (633)
T KOG2385|consen 524 S 524 (633)
T ss_pred h
Confidence 3
No 231
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=87.66 E-value=4.4 Score=35.16 Aligned_cols=97 Identities=20% Similarity=0.366 Sum_probs=61.6
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCC-CCCCCCCC--------------------cC--C-CC-
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRG-CGDSPVTT--------------------PQ--F-YS- 165 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG-~G~s~~~~--------------------~~--~-~~- 165 (262)
..+|+++++-|++|+....+++.+..++.+.+...+++|+-- +-..+.+. |. . ++
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 367889999999999999999999999998888888877631 11111000 00 0 00
Q ss_pred cCcHHHHHHHHHHHHhhCC---------CCcEEEEEEcHHHHHHHHHHhhc
Q 024826 166 ASFLGDMQEVVAHVGSKYP---------KAHLYAVGWSLGANILIRYLGHE 207 (262)
Q Consensus 166 ~~~~~Dl~~~l~~l~~~~~---------~~~i~lvG~SlGg~ia~~~a~~~ 207 (262)
.-++.-+.++++.+.++.+ ..+|-++-+|.-|.|....++.-
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass 146 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASS 146 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhc
Confidence 1122334455555544322 23688899999999888777654
No 232
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=85.87 E-value=11 Score=35.29 Aligned_cols=99 Identities=15% Similarity=0.228 Sum_probs=58.6
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEE-cCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhh--CCCCcE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVF-NSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSK--YPKAHL 188 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~-d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~--~~~~~i 188 (262)
+.|+.|.+-|+-. .+.+ .-..-+.+.|...+.+ |.|=-|++= -..++++-+-+.++|+...+. +..+.+
T Consensus 288 KPPL~VYFSGyR~--aEGF--Egy~MMk~Lg~PfLL~~DpRleGGaF----YlGs~eyE~~I~~~I~~~L~~LgF~~~qL 359 (511)
T TIGR03712 288 KPPLNVYFSGYRP--AEGF--EGYFMMKRLGAPFLLIGDPRLEGGAF----YLGSDEYEQGIINVIQEKLDYLGFDHDQL 359 (511)
T ss_pred CCCeEEeeccCcc--cCcc--hhHHHHHhcCCCeEEeecccccccee----eeCcHHHHHHHHHHHHHHHHHhCCCHHHe
Confidence 5688899999754 2222 1112345667766544 566555431 111234445555555544443 234579
Q ss_pred EEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 189 YAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 189 ~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
++-|.|||..=|+.|++..... +|+++=|+
T Consensus 360 ILSGlSMGTfgAlYYga~l~P~-----AIiVgKPL 389 (511)
T TIGR03712 360 ILSGLSMGTFGALYYGAKLSPH-----AIIVGKPL 389 (511)
T ss_pred eeccccccchhhhhhcccCCCc-----eEEEcCcc
Confidence 9999999999999999886442 45555443
No 233
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=85.53 E-value=6.1 Score=34.26 Aligned_cols=107 Identities=18% Similarity=0.088 Sum_probs=58.2
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCC--cCc-HHHHHHHHHHHHh---hCCC-
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYS--ASF-LGDMQEVVAHVGS---KYPK- 185 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~--~~~-~~Dl~~~l~~l~~---~~~~- 185 (262)
+-+||..+-.+|-.+..- ..-.+++..-...++++.| |..++...+. .+. .+-.+++++.+.. ..|.
T Consensus 33 ~~lvV~~pTGtGWVdp~a-~~a~E~l~~GD~A~va~QY-----SylPSw~sfl~dr~~a~~a~~aL~~aV~~~~~~lP~~ 106 (289)
T PF10081_consen 33 KVLVVATPTGTGWVDPWA-VDALEYLYGGDVAIVAMQY-----SYLPSWLSFLVDRDAAREAARALFEAVYARWSTLPED 106 (289)
T ss_pred ceEEEEcCCCCCccCHHH-HhHHHHHhCCCeEEEEecc-----ccccchHHHhcccchHHHHHHHHHHHHHHHHHhCCcc
Confidence 445555555556655433 3344566655677777775 3333332221 122 2222333444332 2332
Q ss_pred --CcEEEEEEcHHHHHHHHHHhhcCCC-CCCceEEEEcCCcCh
Q 024826 186 --AHLYAVGWSLGANILIRYLGHESHS-CPLSGAVSLCNPFNL 225 (262)
Q Consensus 186 --~~i~lvG~SlGg~ia~~~a~~~~~~-~~i~~~v~l~~p~~~ 225 (262)
-++++.|.|||+.-+........+. ..+++++..++|..-
T Consensus 107 ~RPkL~l~GeSLGa~g~~~af~~~~~~~~~vdGalw~GpP~~s 149 (289)
T PF10081_consen 107 RRPKLYLYGESLGAYGGEAAFDGLDDLRDRVDGALWVGPPFFS 149 (289)
T ss_pred cCCeEEEeccCccccchhhhhccHHHhhhhcceEEEeCCCCCC
Confidence 2799999999987665443322211 349999999998764
No 234
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=83.97 E-value=4.5 Score=41.91 Aligned_cols=96 Identities=10% Similarity=0.160 Sum_probs=58.3
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHH-HHHHHHHHhhCCCCcEE
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDM-QEVVAHVGSKYPKAHLY 189 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl-~~~l~~l~~~~~~~~i~ 189 (262)
+..|++.++|-+.|.... +..++ .+..+..+.+. +...-|. +-..++ ...++.+++..|..|..
T Consensus 2121 se~~~~Ffv~pIEG~tt~--l~~la---~rle~PaYglQ------~T~~vP~----dSies~A~~yirqirkvQP~GPYr 2185 (2376)
T KOG1202|consen 2121 SEEPPLFFVHPIEGFTTA--LESLA---SRLEIPAYGLQ------CTEAVPL----DSIESLAAYYIRQIRKVQPEGPYR 2185 (2376)
T ss_pred ccCCceEEEeccccchHH--HHHHH---hhcCCcchhhh------ccccCCc----chHHHHHHHHHHHHHhcCCCCCee
Confidence 357889999998764321 23332 22233332221 1111122 223343 34677888878888999
Q ss_pred EEEEcHHHHHHHHHHhhcCCCCCCceEEEEcC
Q 024826 190 AVGWSLGANILIRYLGHESHSCPLSGAVSLCN 221 (262)
Q Consensus 190 lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~ 221 (262)
++|+|+|+.++..++..-.+....+.++.+..
T Consensus 2186 l~GYSyG~~l~f~ma~~Lqe~~~~~~lillDG 2217 (2376)
T KOG1202|consen 2186 LAGYSYGACLAFEMASQLQEQQSPAPLILLDG 2217 (2376)
T ss_pred eeccchhHHHHHHHHHHHHhhcCCCcEEEecC
Confidence 99999999999998876554433555676665
No 235
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=83.26 E-value=4 Score=38.29 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=57.9
Q ss_pred HHHhCCceEEEEcCCCCCCCCCC--CcCCCCcCc--------HHHHHHHHHHHHhhC---CCCcEEEEEEcHHHHHHHHH
Q 024826 137 RARSKGWRVVVFNSRGCGDSPVT--TPQFYSASF--------LGDMQEVVAHVGSKY---PKAHLYAVGWSLGANILIRY 203 (262)
Q Consensus 137 ~l~~~G~~vv~~d~rG~G~s~~~--~~~~~~~~~--------~~Dl~~~l~~l~~~~---~~~~i~lvG~SlGg~ia~~~ 203 (262)
....+||.++.-|. ||..+... .....+.+. ..+...+-+.+.+.| +...-+..|-|.||..++..
T Consensus 54 ~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~ 132 (474)
T PF07519_consen 54 TALARGYATASTDS-GHQGSAGSDDASFGNNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMA 132 (474)
T ss_pred hhhhcCeEEEEecC-CCCCCcccccccccCCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHH
Confidence 45678999999996 44333221 111111111 112233333444332 33479999999999999999
Q ss_pred HhhcCCCCCCceEEEEcCCcChHHH
Q 024826 204 LGHESHSCPLSGAVSLCNPFNLVIA 228 (262)
Q Consensus 204 a~~~~~~~~i~~~v~l~~p~~~~~~ 228 (262)
|.++|+. .+++++-+|.++....
T Consensus 133 AQryP~d--fDGIlAgaPA~~~~~~ 155 (474)
T PF07519_consen 133 AQRYPED--FDGILAGAPAINWTHL 155 (474)
T ss_pred HHhChhh--cCeEEeCCchHHHHHH
Confidence 9999999 9999999998876443
No 236
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=81.12 E-value=2.9 Score=31.80 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=23.1
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHH-HHHHHhCCc
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHM-LLRARSKGW 143 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~-~~~l~~~G~ 143 (262)
+.+|+|+-+||++|... .|+..+ ++.+.+.|-
T Consensus 50 p~KpLVlSfHG~tGtGK-n~v~~liA~~ly~~G~ 82 (127)
T PF06309_consen 50 PRKPLVLSFHGWTGTGK-NFVSRLIAEHLYKSGM 82 (127)
T ss_pred CCCCEEEEeecCCCCcH-HHHHHHHHHHHHhccc
Confidence 47999999999998776 566555 445556664
No 237
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=80.40 E-value=2.8 Score=31.08 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=16.0
Q ss_pred CCCCeEEEEeecCCCCCCCCCCcEEEEECCCCCCCCc
Q 024826 92 KDDGSVALDWISGDHQLLPPDSPVLILMPGLTGGSED 128 (262)
Q Consensus 92 ~dg~~i~l~~~~~~~~~~~~~~p~vv~lHG~~g~~~~ 128 (262)
-||-.++.-..... .+++.++|++||+.|+..+
T Consensus 75 I~g~~iHFih~rs~----~~~aiPLll~HGWPgSf~E 107 (112)
T PF06441_consen 75 IDGLDIHFIHVRSK----RPNAIPLLLLHGWPGSFLE 107 (112)
T ss_dssp ETTEEEEEEEE--S-----TT-EEEEEE--SS--GGG
T ss_pred EeeEEEEEEEeeCC----CCCCeEEEEECCCCccHHh
Confidence 35745544444433 3467789999999997654
No 238
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=80.20 E-value=9.2 Score=31.80 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=38.3
Q ss_pred CCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCc-eEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhh
Q 024826 110 PPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGW-RVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSK 182 (262)
Q Consensus 110 ~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~-~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~ 182 (262)
..+..+|+++||...++...| .-+-..+.++|| .|++...-|+ | ++..+++++++.
T Consensus 135 ~k~e~~vlmgHGt~h~s~~~Y-acLd~~~~~~~f~~v~v~~ve~y-------P---------~~d~vi~~l~~~ 191 (265)
T COG4822 135 NKDEILVLMGHGTDHHSNAAY-ACLDHVLDEYGFDNVFVAAVEGY-------P---------LVDTVIEYLRKN 191 (265)
T ss_pred CcCeEEEEEecCCCccHHHHH-HHHHHHHHhcCCCceEEEEecCC-------C---------cHHHHHHHHHHc
Confidence 356788999999877777655 445556678899 7776665444 1 246677777764
No 239
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=79.85 E-value=19 Score=31.96 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=61.8
Q ss_pred CCCCcEEEEECCCCCCCCcHHHHHHHHHH-------Hh------CCceEEEEcCC-CCCCCCCCCcCCCC---cCcHHHH
Q 024826 110 PPDSPVLILMPGLTGGSEDSYVRHMLLRA-------RS------KGWRVVVFNSR-GCGDSPVTTPQFYS---ASFLGDM 172 (262)
Q Consensus 110 ~~~~p~vv~lHG~~g~~~~~y~~~~~~~l-------~~------~G~~vv~~d~r-G~G~s~~~~~~~~~---~~~~~Dl 172 (262)
...+|..+.+.|..|.|...+ -.+. ++ .. +--+++.+|.| |.|.|=......|. ...+.|+
T Consensus 28 ks~~pl~lwlqGgpGaSstG~-GNFe-E~GPl~~~~~~r~~TWlk~adllfvDnPVGaGfSyVdg~~~Y~~~~~qia~Dl 105 (414)
T KOG1283|consen 28 KSERPLALWLQGGPGASSTGF-GNFE-ELGPLDLDGSPRDWTWLKDADLLFVDNPVGAGFSYVDGSSAYTTNNKQIALDL 105 (414)
T ss_pred ccCCCeeEEecCCCCCCCcCc-cchh-hcCCcccCCCcCCchhhhhccEEEecCCCcCceeeecCcccccccHHHHHHHH
Confidence 357899999999988877554 2221 11 11 12356666655 77766332233443 3335577
Q ss_pred HHHHHHHHhhC---CCCcEEEEEEcHHHHHHHHHHhhcC
Q 024826 173 QEVVAHVGSKY---PKAHLYAVGWSLGANILIRYLGHES 208 (262)
Q Consensus 173 ~~~l~~l~~~~---~~~~i~lvG~SlGg~ia~~~a~~~~ 208 (262)
.++++..-..+ ...|++++-.|+||-++..++.+.-
T Consensus 106 ~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~ 144 (414)
T KOG1283|consen 106 VELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELD 144 (414)
T ss_pred HHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhHH
Confidence 77776665443 3569999999999999998887654
No 240
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=79.13 E-value=19 Score=26.12 Aligned_cols=81 Identities=11% Similarity=0.097 Sum_probs=53.1
Q ss_pred HHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHH--HHHHHHHhhcCC
Q 024826 132 RHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGA--NILIRYLGHESH 209 (262)
Q Consensus 132 ~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg--~ia~~~a~~~~~ 209 (262)
..+.+.+...|+..-.+.++..|.+... ....+..+--.+.++.+...+|+.+++++|-|--. -+-...+.++|+
T Consensus 14 ~~l~~Fl~~~~~P~G~~~Lr~~~~~~~~---~~~~~~~~~K~~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~~P~ 90 (100)
T PF09949_consen 14 PFLRDFLRRNGFPAGPLLLRDYGPSLSG---LFKSGAEEHKRDNIERILRDFPERKFILIGDSGQHDPEIYAEIARRFPG 90 (100)
T ss_pred HHHHHHHHhcCCCCCceEcccCCccccc---cccCCchhHHHHHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHHHCCC
Confidence 3445556667888777888877544321 11112123456788888889999999999988543 344456778998
Q ss_pred CCCCceEE
Q 024826 210 SCPLSGAV 217 (262)
Q Consensus 210 ~~~i~~~v 217 (262)
+ |.++.
T Consensus 91 ~--i~ai~ 96 (100)
T PF09949_consen 91 R--ILAIY 96 (100)
T ss_pred C--EEEEE
Confidence 8 87654
No 241
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=76.73 E-value=4.5 Score=31.90 Aligned_cols=38 Identities=21% Similarity=0.448 Sum_probs=31.1
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcC
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNS 150 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~ 150 (262)
+|.||++-|+.|+..+..-..+...|.+.|+.|+.+|-
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg 38 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG 38 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC
Confidence 47899999999888777767788888999999999985
No 242
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=73.99 E-value=43 Score=29.49 Aligned_cols=108 Identities=11% Similarity=0.147 Sum_probs=65.1
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAV 191 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lv 191 (262)
..|.|+++--+.|+-. ..++..++.+. .-..|++.|+-..-..+.....+...++.+-+.++++++. | .++++
T Consensus 102 pdPkvLivapmsGH~a-TLLR~TV~alL-p~~~vyitDW~dAr~Vp~~~G~FdldDYIdyvie~~~~~G---p--~~hv~ 174 (415)
T COG4553 102 PDPKVLIVAPMSGHYA-TLLRGTVEALL-PYHDVYITDWVDARMVPLEAGHFDLDDYIDYVIEMINFLG---P--DAHVM 174 (415)
T ss_pred CCCeEEEEecccccHH-HHHHHHHHHhc-cccceeEeeccccceeecccCCccHHHHHHHHHHHHHHhC---C--CCcEE
Confidence 3578888888877654 55677777775 4567888888655555544444444555555555555554 3 35666
Q ss_pred EEcHHHH-----HHHHHHhhcCCCCCCceEEEEcCCcChHHH
Q 024826 192 GWSLGAN-----ILIRYLGHESHSCPLSGAVSLCNPFNLVIA 228 (262)
Q Consensus 192 G~SlGg~-----ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~ 228 (262)
+.+.=+. +++.-+...|. .-...+++++|.|...+
T Consensus 175 aVCQP~vPvLAAisLM~~~~~p~--~PssMtlmGgPIDaR~n 214 (415)
T COG4553 175 AVCQPTVPVLAAISLMEEDGDPN--VPSSMTLMGGPIDARKN 214 (415)
T ss_pred EEecCCchHHHHHHHHHhcCCCC--CCceeeeecCccccccC
Confidence 6664433 22222222333 36678999999986654
No 243
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=71.41 E-value=5.7 Score=33.46 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=35.0
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSR 151 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~r 151 (262)
+.|+||++.|+.++....-++.+...+-.+|++|.++..+
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~p 68 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKP 68 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCC
Confidence 5699999999998888888889999999999999988654
No 244
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=70.47 E-value=6.3 Score=33.95 Aligned_cols=40 Identities=18% Similarity=0.475 Sum_probs=34.9
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSR 151 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~r 151 (262)
..|+||++.|+.++.....++.+...+-.+|++|..+.-+
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~P 93 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAP 93 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCC
Confidence 4699999999998888888899999999999999998654
No 245
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=70.29 E-value=9.5 Score=32.05 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=26.7
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNS 150 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~ 150 (262)
.-|.+++.||.++...... .....+...++.+...+.
T Consensus 48 ~~p~v~~~h~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 84 (299)
T COG1073 48 KLPAVVFLHGFGSSKEQSL--GYAVLLAEKGYRVLAGDA 84 (299)
T ss_pred cCceEEeccCccccccCcc--hHHHHhhhceeEEeeecc
Confidence 5788999999987665422 255667778888777664
No 246
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=69.17 E-value=14 Score=31.28 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=50.2
Q ss_pred CcEEEEECCCCC-CCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCc-CC-CCcCcHHHHHHHH------HHHHhhC
Q 024826 113 SPVLILMPGLTG-GSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTP-QF-YSASFLGDMQEVV------AHVGSKY 183 (262)
Q Consensus 113 ~p~vv~lHG~~g-~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~-~~-~~~~~~~Dl~~~l------~~l~~~~ 183 (262)
.|.|++++-... ...+.|+......+.+.|+.+..++...--....... .. ...+.+.-+.+.+ +.+++..
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~ 110 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAV 110 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHH
Confidence 466888887543 2345677777788888999988887652100000000 11 1123222222222 2222222
Q ss_pred CCCcEEEEEEcHHHHHHHHHHh
Q 024826 184 PKAHLYAVGWSLGANILIRYLG 205 (262)
Q Consensus 184 ~~~~i~lvG~SlGg~ia~~~a~ 205 (262)
.+ -..++|.|.|++++.....
T Consensus 111 ~~-G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 111 KN-GTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred HC-CCEEEEECHHHHhhhccce
Confidence 22 3779999999998766554
No 247
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=69.01 E-value=28 Score=27.14 Aligned_cols=76 Identities=16% Similarity=0.295 Sum_probs=50.0
Q ss_pred cEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEE
Q 024826 114 PVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGW 193 (262)
Q Consensus 114 p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~ 193 (262)
..-++..|..|.....+...+...+.....+++++.. |..+... ......+.+++.++++.+++..|..++++++.
T Consensus 23 ~~~v~n~g~~G~t~~~~~~~~~~~~~~~~pd~v~i~~---G~ND~~~-~~~~~~~~~~~~~l~~~~~~~~p~~~vi~~~~ 98 (174)
T cd01841 23 GKTVNNLGIAGISSRQYLEHIEPQLIQKNPSKVFLFL---GTNDIGK-EVSSNQFIKWYRDIIEQIREEFPNTKIYLLSV 98 (174)
T ss_pred CCeEEecccccccHHHHHHHHHHHHHhcCCCEEEEEe---ccccCCC-CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEee
Confidence 4457888888876655555554556666777776653 2222211 11235677889999999998888888888874
No 248
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=68.05 E-value=5.2 Score=37.39 Aligned_cols=106 Identities=20% Similarity=0.121 Sum_probs=54.3
Q ss_pred CCcEEEEECCCC---CCCC-cHHHHHHHHHHHhC-CceEEEEcCC----CCCCCCCCCcCCCCcCcHHHHHHHHHHHHhh
Q 024826 112 DSPVLILMPGLT---GGSE-DSYVRHMLLRARSK-GWRVVVFNSR----GCGDSPVTTPQFYSASFLGDMQEVVAHVGSK 182 (262)
Q Consensus 112 ~~p~vv~lHG~~---g~~~-~~y~~~~~~~l~~~-G~~vv~~d~r----G~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~ 182 (262)
+..++|.+-|.+ |++. +-| -.+.++.. .--|+.+||| |+-.-+...+...+.++.| -.-+++|+++.
T Consensus 134 n~tVlVWiyGGGF~sGt~SLdvY---dGk~la~~envIvVs~NYRvG~FGFL~l~~~~eaPGNmGl~D-QqLAl~WV~~N 209 (601)
T KOG4389|consen 134 NLTVLVWIYGGGFYSGTPSLDVY---DGKFLAAVENVIVVSMNYRVGAFGFLYLPGHPEAPGNMGLLD-QQLALQWVQEN 209 (601)
T ss_pred CceEEEEEEcCccccCCcceeee---ccceeeeeccEEEEEeeeeeccceEEecCCCCCCCCccchHH-HHHHHHHHHHh
Confidence 455788888754 3221 122 12334433 4566788888 2211111112222334433 34466777654
Q ss_pred ---CC--CCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcC
Q 024826 183 ---YP--KAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCN 221 (262)
Q Consensus 183 ---~~--~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~ 221 (262)
++ .++|.++|.|.|+.-+..-+..-+.+.-++.+|+-|+
T Consensus 210 i~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSG 253 (601)
T KOG4389|consen 210 IAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSG 253 (601)
T ss_pred HHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcC
Confidence 33 3489999999998755433333333333555554444
No 249
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=65.73 E-value=24 Score=27.46 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=45.9
Q ss_pred EEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEE
Q 024826 115 VLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGW 193 (262)
Q Consensus 115 ~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~ 193 (262)
.-++..|..|.........+..........++++.. |. .+.. .......+.+.+.++++.++...|+.++++++.
T Consensus 23 ~~v~N~Gi~G~~~~~~~~~~~~~~~~~~p~~vvi~~-G~--ND~~-~~~~~~~~~~~~~~lv~~i~~~~~~~~iil~~~ 97 (171)
T cd04502 23 LPVVNRGFGGSTLADCLHYFDRLVLPYQPRRVVLYA-GD--NDLA-SGRTPEEVLRDFRELVNRIRAKLPDTPIAIISI 97 (171)
T ss_pred CceeecCcccchHHHHHHHHHhhhccCCCCEEEEEE-ec--Cccc-CCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEe
Confidence 347888998876554444443444444556666532 11 1211 111235567788999999998888888999884
No 250
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=65.55 E-value=5.7 Score=34.45 Aligned_cols=105 Identities=17% Similarity=0.136 Sum_probs=55.7
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCc-------eEEEEcCCCCCCCCCCCcCCCCcCc--------HHHHHHHHHHHH
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGW-------RVVVFNSRGCGDSPVTTPQFYSASF--------LGDMQEVVAHVG 180 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~-------~vv~~d~rG~G~s~~~~~~~~~~~~--------~~Dl~~~l~~l~ 180 (262)
-|++.|.+ +..-.-.+.+...+.+.|. +++++|..|.=..+...-..+...+ ..++.++++.++
T Consensus 27 ~iv~~GAG-sAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ 105 (279)
T cd05312 27 RILFLGAG-SAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVK 105 (279)
T ss_pred EEEEECcC-HHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcC
Confidence 35556653 2222333344555555687 8999999987433221100000111 124445554443
Q ss_pred hhCCCCcEEEEEEcH-HHHHHHHHHhhcCCCCCCceEEEEcCCcChHH
Q 024826 181 SKYPKAHLYAVGWSL-GANILIRYLGHESHSCPLSGAVSLCNPFNLVI 227 (262)
Q Consensus 181 ~~~~~~~i~lvG~Sl-Gg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~ 227 (262)
+-+++|.|- ||.+.-.+.......++=.-+..+++|....+
T Consensus 106 ------ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E 147 (279)
T cd05312 106 ------PTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAE 147 (279)
T ss_pred ------CCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccc
Confidence 568999995 77776666665442211234677788876444
No 251
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=65.28 E-value=18 Score=28.58 Aligned_cols=45 Identities=16% Similarity=0.333 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEE
Q 024826 169 LGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAV 217 (262)
Q Consensus 169 ~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v 217 (262)
.+++.+.++.++.. ..+|+++|.|..|.+.+++++..++. |+.++
T Consensus 54 ~~~l~~~L~~~~~~--gk~I~~yGA~~kg~tlln~~g~~~~~--I~~vv 98 (160)
T PF08484_consen 54 KAELREFLEKLKAE--GKRIAGYGAGAKGNTLLNYFGLDNDL--IDYVV 98 (160)
T ss_dssp HHHHHHHHHHHHHT--T--EEEE---SHHHHHHHHHT--TTT--S--EE
T ss_pred HHHHHHHHHHHHHc--CCEEEEECcchHHHHHHHHhCCCcce--eEEEE
Confidence 34455555555554 34799999999999999999987765 66544
No 252
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=61.94 E-value=23 Score=28.26 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=41.5
Q ss_pred HHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHH
Q 024826 138 ARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLG 196 (262)
Q Consensus 138 l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlG 196 (262)
+.+.|++.+++|.-.+=-. .+......++.++++.+++.++..++.++.=|.|
T Consensus 36 Lk~~Gik~li~DkDNTL~~------~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaG 88 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTP------PYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAG 88 (168)
T ss_pred hhhcCceEEEEcCCCCCCC------CCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence 7789999999998655211 2234555788999999999988778999999986
No 253
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=61.87 E-value=15 Score=30.61 Aligned_cols=78 Identities=18% Similarity=0.322 Sum_probs=48.0
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceE-EEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRV-VVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYA 190 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~v-v~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~l 190 (262)
++-+||++-|++.+.. -+.++ ....++++ ++.|||..-. + .| + . ..+.|.+
T Consensus 10 ~~~LilfF~GWg~d~~--~f~hL---~~~~~~D~l~~yDYr~l~~-----------d--~~-------~-~--~y~~i~l 61 (213)
T PF04301_consen 10 GKELILFFAGWGMDPS--PFSHL---ILPENYDVLICYDYRDLDF-----------D--FD-------L-S--GYREIYL 61 (213)
T ss_pred CCeEEEEEecCCCChH--Hhhhc---cCCCCccEEEEecCccccc-----------c--cc-------c-c--cCceEEE
Confidence 4578899999965332 22332 12456766 4678874421 0 01 1 1 2237999
Q ss_pred EEEcHHHHHHHHHHhhcCCCCCCceEEEEcC
Q 024826 191 VGWSLGANILIRYLGHESHSCPLSGAVSLCN 221 (262)
Q Consensus 191 vG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~ 221 (262)
+++|||=.+|.+++...+ ++.++++++
T Consensus 62 vAWSmGVw~A~~~l~~~~----~~~aiAING 88 (213)
T PF04301_consen 62 VAWSMGVWAANRVLQGIP----FKRAIAING 88 (213)
T ss_pred EEEeHHHHHHHHHhccCC----cceeEEEEC
Confidence 999999999888876542 566666666
No 254
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.63 E-value=7.6 Score=37.12 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhh-CC-CCcEEEEEEcHHHHHHHHHHhhc-----CCC----CCCceEEEEcCCcC
Q 024826 170 GDMQEVVAHVGSK-YP-KAHLYAVGWSLGANILIRYLGHE-----SHS----CPLSGAVSLCNPFN 224 (262)
Q Consensus 170 ~Dl~~~l~~l~~~-~~-~~~i~lvG~SlGg~ia~~~a~~~-----~~~----~~i~~~v~l~~p~~ 224 (262)
.-.+++++.++.. .+ +++|..+||||||.++=..+.+. |+- ..-++++.++.|..
T Consensus 508 ~Rs~~lleql~~~~VG~~RPivwI~HSmGGLl~K~lLlda~~S~kP~ms~l~kNtrGiiFls~PHr 573 (697)
T KOG2029|consen 508 ARSNELLEQLQAAGVGDDRPIVWIGHSMGGLLAKKLLLDAYCSSKPDMSNLNKNTRGIIFLSVPHR 573 (697)
T ss_pred HHHHHHHHHHHHhccCCCCceEEEecccchHHHHHHHHHHhhcCCchhhhhhccCCceEEEecCCC
Confidence 3445666666653 23 67999999999998776665442 211 13567888888754
No 255
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=59.07 E-value=1e+02 Score=25.38 Aligned_cols=88 Identities=17% Similarity=0.259 Sum_probs=49.2
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhC-CceEEEEcCCCCCCCCC-----CCcCCCC-cCcHHHHHHHH------HH
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSK-GWRVVVFNSRGCGDSPV-----TTPQFYS-ASFLGDMQEVV------AH 178 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~-G~~vv~~d~rG~G~s~~-----~~~~~~~-~~~~~Dl~~~l------~~ 178 (262)
..+.|++++-..+ ..+.|.......+.+. |+.+..++... .... .....+. .+.+..+.+.+ +.
T Consensus 30 ~~~~i~~IptAs~-~~~~~~~~~~~a~~~l~G~~~~~~~~~~--~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~ 106 (212)
T cd03146 30 ARPKVLFVPTASG-DRDEYTARFYAAFESLRGVEVSHLHLFD--TEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAI 106 (212)
T ss_pred CCCeEEEECCCCC-CHHHHHHHHHHHHhhccCcEEEEEeccC--cccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHH
Confidence 4567888886654 3446777788888888 99998888643 1110 0000111 22222222111 11
Q ss_pred HHhhCCCCcEEEEEEcHHHHHHHHH
Q 024826 179 VGSKYPKAHLYAVGWSLGANILIRY 203 (262)
Q Consensus 179 l~~~~~~~~i~lvG~SlGg~ia~~~ 203 (262)
+++.+ .+...++|.|.|++++...
T Consensus 107 l~~~~-~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 107 LKAAL-ERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred HHHHH-HCCCEEEEECHhHHhhCCC
Confidence 22211 1247899999999998763
No 256
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=57.67 E-value=4.3 Score=34.15 Aligned_cols=40 Identities=25% Similarity=0.494 Sum_probs=31.6
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSR 151 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~r 151 (262)
+.|+||++.|+.|+....-++.+...+-.+|++|.++..|
T Consensus 29 ~~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~p 68 (228)
T PF03976_consen 29 GIPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKP 68 (228)
T ss_dssp HHEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS-
T ss_pred CCcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCC
Confidence 4689999999988887777788888888899999999765
No 257
>PRK07933 thymidylate kinase; Validated
Probab=56.85 E-value=26 Score=28.98 Aligned_cols=41 Identities=20% Similarity=0.341 Sum_probs=35.3
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDS 156 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s 156 (262)
+|.+=|.-|+..+.....+..++...|+.|+....|++|.+
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~ 42 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRS 42 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 67888998888888888999999999999999999976654
No 258
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=56.13 E-value=20 Score=27.55 Aligned_cols=44 Identities=16% Similarity=0.430 Sum_probs=30.5
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVT 159 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~ 159 (262)
+|.+-|.-++........++.++.++||+|.++=.-++|+....
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~d 45 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFEID 45 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTTCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcccC
Confidence 56666776666778888999999999999986666666655443
No 259
>PRK03846 adenylylsulfate kinase; Provisional
Probab=55.46 E-value=75 Score=25.61 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=29.9
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNS 150 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~ 150 (262)
.+|.+|.+.|..|+..+...+.+...+...|+.++.+|.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~ 60 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDG 60 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 567899999998877766666666677777888888864
No 260
>PRK00889 adenylylsulfate kinase; Provisional
Probab=55.28 E-value=26 Score=27.58 Aligned_cols=38 Identities=24% Similarity=0.476 Sum_probs=30.8
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcC
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNS 150 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~ 150 (262)
++.++++.|..|+..+...+.++..+...|..+..+|.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 45588899999988877777778888788888888875
No 261
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=54.94 E-value=19 Score=31.68 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=25.7
Q ss_pred EEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCC
Q 024826 117 ILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSP 157 (262)
Q Consensus 117 v~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~ 157 (262)
|++-|..|-.. .+.+..|.+.||.|+++|.--.|...
T Consensus 3 iLVtGGAGYIG----SHtv~~Ll~~G~~vvV~DNL~~g~~~ 39 (329)
T COG1087 3 VLVTGGAGYIG----SHTVRQLLKTGHEVVVLDNLSNGHKI 39 (329)
T ss_pred EEEecCcchhH----HHHHHHHHHCCCeEEEEecCCCCCHH
Confidence 45555544332 46678889999999999987666443
No 262
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=54.63 E-value=46 Score=29.31 Aligned_cols=60 Identities=10% Similarity=0.172 Sum_probs=43.3
Q ss_pred HhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhc
Q 024826 139 RSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHE 207 (262)
Q Consensus 139 ~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~ 207 (262)
...+|+-+++- +|+.....+....|.+++.+++++++.. .+-++|.++|+.+++.++.-.
T Consensus 96 ~~~~~DG~IIT-----GAp~e~~~fedv~YW~El~~i~~w~~~~----~~s~LgICwGaQa~a~algGi 155 (302)
T PRK05368 96 KDEKFDGLIIT-----GAPVEQLPFEDVDYWDELKEILDWAKTH----VTSTLFICWAAQAALYHLYGI 155 (302)
T ss_pred ccCCCCEEEEc-----CCCCCCccCCCCchHHHHHHHHHHHHHc----CCCEEEEcHHHHHHHHHcCCC
Confidence 35677777774 4554333333456677899999999976 567899999999999888653
No 263
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.34 E-value=57 Score=29.33 Aligned_cols=86 Identities=13% Similarity=0.077 Sum_probs=52.2
Q ss_pred EEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhC--CCCcEEEEE
Q 024826 115 VLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKY--PKAHLYAVG 192 (262)
Q Consensus 115 ~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvG 192 (262)
.||++=||+|..+ .++........+.||.++-+-.+-.-.....+.. .-...+....+..+...+ ...++..--
T Consensus 40 ~Iv~~~gWag~~~-r~l~ky~~~Yq~~g~~~~~~tap~~~~~~~~s~~---~~sl~~~~~~l~~L~~~~~~~~~pi~fh~ 115 (350)
T KOG2521|consen 40 PIVVLLGWAGAID-RNLMKYSKIYQDKGYIVVRITAPCPSVFLSASRR---ILSLSLASTRLSELLSDYNSDPCPIIFHV 115 (350)
T ss_pred cEEEEeeeccccc-hhHHHHHHHHhcCCceEEEecCcccccccccccc---cchhhHHHHHHHHHhhhccCCcCceEEEE
Confidence 4566667767655 4777788888899999988776654322211111 111233334444444443 355888889
Q ss_pred EcHHHHHHHHHH
Q 024826 193 WSLGANILIRYL 204 (262)
Q Consensus 193 ~SlGg~ia~~~a 204 (262)
+|+||...+...
T Consensus 116 FS~ng~~~~~si 127 (350)
T KOG2521|consen 116 FSGNGVRLMYSI 127 (350)
T ss_pred ecCCceeehHHH
Confidence 999998766544
No 264
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=54.13 E-value=81 Score=22.81 Aligned_cols=64 Identities=11% Similarity=0.175 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCceEEE--EcCCCCCCCCCC--CcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEc
Q 024826 131 VRHMLLRARSKGWRVVV--FNSRGCGDSPVT--TPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWS 194 (262)
Q Consensus 131 ~~~~~~~l~~~G~~vv~--~d~rG~G~s~~~--~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~S 194 (262)
+...+.++.++||.+.+ -|-|..-.+... +...+.......+.+.++...+.+|+.-|=++|+.
T Consensus 16 i~~Qv~~ll~qG~~i~iE~ad~r~~r~~~W~mW~~p~~~~~~~~~Vl~el~~c~~~~p~~yVRlig~D 83 (99)
T PF00101_consen 16 IAKQVRYLLSQGWIIGIEHADPRRFRTSYWQMWKLPMFGCTDPAQVLAELEACLAEHPGEYVRLIGFD 83 (99)
T ss_dssp HHHHHHHHHHTT-EEEEEEESCGGSTSSS-EEESSEBTTBSSHHHHHHHHHHHHHHSTTSEEEEEEEE
T ss_pred HHHHHHhhhhcCceeeEEecCCCCCCCCEeecCCCCCcCCCCHHHHHHHHHHHHHhCCCceEEEEEEc
Confidence 56678889999998843 333322222222 22223345567788888999999999999999974
No 265
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=54.11 E-value=56 Score=27.83 Aligned_cols=91 Identities=9% Similarity=0.181 Sum_probs=47.8
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCce-EEEEcCCCCC--CCCC-----CC-c-CCCCcCcHHHHHH------H
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWR-VVVFNSRGCG--DSPV-----TT-P-QFYSASFLGDMQE------V 175 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~-vv~~d~rG~G--~s~~-----~~-~-~~~~~~~~~Dl~~------~ 175 (262)
..|.|++++-..+ ..+.|...+...+.+.|+. |-.++.+... .++. .. . -+...+.+..+.+ +
T Consensus 27 ~~~rI~~iptAS~-~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l 105 (250)
T TIGR02069 27 EDAIIVIITSASE-EPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPL 105 (250)
T ss_pred CCceEEEEeCCCC-ChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcH
Confidence 4567888885543 3345666777788888984 5556653221 1110 00 0 0111233222221 1
Q ss_pred HHHHHhhCCCCcEEEEEEcHHHHHHHHHH
Q 024826 176 VAHVGSKYPKAHLYAVGWSLGANILIRYL 204 (262)
Q Consensus 176 l~~l~~~~~~~~i~lvG~SlGg~ia~~~a 204 (262)
.+.+++.+.. -..++|.|.|++++....
T Consensus 106 ~~~l~~~~~~-G~vi~G~SAGA~i~~~~~ 133 (250)
T TIGR02069 106 LDRLRKRVHE-GIILGGTSAGAAVMSDTM 133 (250)
T ss_pred HHHHHHHHHc-CCeEEEccHHHHhcccce
Confidence 1223333322 378999999999886555
No 266
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=53.22 E-value=1.3e+02 Score=26.94 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=55.0
Q ss_pred HHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCC--cEEEEEEcHHHHHHHHHHhhcCC
Q 024826 132 RHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKA--HLYAVGWSLGANILIRYLGHESH 209 (262)
Q Consensus 132 ~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~--~i~lvG~SlGg~ia~~~a~~~~~ 209 (262)
..-+.+...+||+++.+|--|.-... ....+.+..+.+-+.+..+.. .++++--+.-|+-++.=|..+.+
T Consensus 211 fDAi~~Akar~~DvvliDTAGRLhnk--------~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~e 282 (340)
T COG0552 211 FDAIQAAKARGIDVVLIDTAGRLHNK--------KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNE 282 (340)
T ss_pred HHHHHHHHHcCCCEEEEeCcccccCc--------hhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHH
Confidence 35566777899999999966543222 345566666666666554433 37788788989999888888877
Q ss_pred CCCCceEEE
Q 024826 210 SCPLSGAVS 218 (262)
Q Consensus 210 ~~~i~~~v~ 218 (262)
...++++|+
T Consensus 283 av~l~GiIl 291 (340)
T COG0552 283 AVGLDGIIL 291 (340)
T ss_pred hcCCceEEE
Confidence 666777654
No 267
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=52.24 E-value=1.2e+02 Score=24.03 Aligned_cols=39 Identities=28% Similarity=0.535 Sum_probs=30.8
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNS 150 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~ 150 (262)
.++.++++.|..|+..+...+.+...+...|+.++.+|.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~ 54 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDG 54 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 567899999998888777767777777778888888764
No 268
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=51.55 E-value=0.82 Score=38.71 Aligned_cols=93 Identities=14% Similarity=-0.079 Sum_probs=53.1
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEE
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVG 192 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG 192 (262)
...++..||...+..... ..........++.++..|+++++.+...........-..+...++.+........++.++|
T Consensus 88 ~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g 166 (299)
T COG1073 88 GESGGDPRGLADSEGYAE-DFSAAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWG 166 (299)
T ss_pred cccccccccccCcccccc-ccchhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhccccee
Confidence 455788888744332111 1222344567899999999999988633222111111122233333332111334799999
Q ss_pred EcHHHHHHHHHHhh
Q 024826 193 WSLGANILIRYLGH 206 (262)
Q Consensus 193 ~SlGg~ia~~~a~~ 206 (262)
.|+||..++...+.
T Consensus 167 ~s~g~~~~~~~~~~ 180 (299)
T COG1073 167 ESLGGALALLLLGA 180 (299)
T ss_pred eccCceeecccccc
Confidence 99999999886654
No 269
>PLN02924 thymidylate kinase
Probab=51.46 E-value=35 Score=28.40 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=36.9
Q ss_pred CCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCC
Q 024826 110 PPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGC 153 (262)
Q Consensus 110 ~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~ 153 (262)
+..++.+|.+=|..|+..+.....+...+..+|+.|..+..++.
T Consensus 12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~ 55 (220)
T PLN02924 12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDR 55 (220)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCC
Confidence 34567899999999988888888888999999999988877763
No 270
>PRK13529 malate dehydrogenase; Provisional
Probab=50.06 E-value=14 Score=35.24 Aligned_cols=106 Identities=15% Similarity=0.149 Sum_probs=55.7
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCc-------eEEEEcCCCCCCCCCCCcCCCCcCcH---------------HHHH
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGW-------RVVVFNSRGCGDSPVTTPQFYSASFL---------------GDMQ 173 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~-------~vv~~d~rG~G~s~~~~~~~~~~~~~---------------~Dl~ 173 (262)
-+++.|.+. ..-.-.+.+...+.+.|. +++++|..|.=..+...-..+...++ .++.
T Consensus 297 riv~~GAGs-AgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~ 375 (563)
T PRK13529 297 RIVFLGAGS-AGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLL 375 (563)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHH
Confidence 455566532 222223344445556787 89999999863332211000001111 2445
Q ss_pred HHHHHHHhhCCCCcEEEEEEcH-HHHHHHHHHhhcCCCCCCceEEEEcCCcChHHH
Q 024826 174 EVVAHVGSKYPKAHLYAVGWSL-GANILIRYLGHESHSCPLSGAVSLCNPFNLVIA 228 (262)
Q Consensus 174 ~~l~~l~~~~~~~~i~lvG~Sl-Gg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~ 228 (262)
++++.++ |-+++|.|- ||...-.........+.=.-+..+|+|....++
T Consensus 376 e~v~~~k------PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~ 425 (563)
T PRK13529 376 EVVRNVK------PTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEA 425 (563)
T ss_pred HHHhccC------CCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCccc
Confidence 5555444 678999998 776665555544332112346778888875443
No 271
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=49.95 E-value=26 Score=33.01 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=36.1
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRG 152 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG 152 (262)
+.|++|++.|+.|+....-++.+...+..+|++|..+..|.
T Consensus 38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~ 78 (493)
T TIGR03708 38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPS 78 (493)
T ss_pred CCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCC
Confidence 57899999999988888888999999999999999987763
No 272
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=49.03 E-value=88 Score=24.11 Aligned_cols=73 Identities=4% Similarity=0.118 Sum_probs=43.4
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEE
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGW 193 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~ 193 (262)
-++..|..|...+.....+...+ ....+++++..-+. +.. .......+.+++.++++.+++..++.++++++.
T Consensus 23 ~v~n~g~~G~~~~~~~~~l~~~~-~~~pd~vvl~~G~N---D~~-~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~ 95 (169)
T cd01828 23 KVANRGISGDTTRGLLARLDEDV-ALQPKAIFIMIGIN---DLA-QGTSDEDIVANYRTILEKLRKHFPNIKIVVQSI 95 (169)
T ss_pred ceEecCcccccHHHHHHHHHHHh-ccCCCEEEEEeecc---CCC-CCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 46677877766544434433333 44557777654322 111 111225667788888888888777778888765
No 273
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=47.14 E-value=79 Score=25.50 Aligned_cols=40 Identities=20% Similarity=0.455 Sum_probs=28.7
Q ss_pred EEECCCCCCCCcHHHHHHHHHHHh----CCceEEEEcCCCCCCC
Q 024826 117 ILMPGLTGGSEDSYVRHMLLRARS----KGWRVVVFNSRGCGDS 156 (262)
Q Consensus 117 v~lHG~~g~~~~~y~~~~~~~l~~----~G~~vv~~d~rG~G~s 156 (262)
+++-|..|+..+..+..++..+.. ...+++++|..|....
T Consensus 41 ~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~~~l~ 84 (205)
T PF01580_consen 41 LLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPKGSDLA 84 (205)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSCCG
T ss_pred EEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCCccccc
Confidence 667788887777788878777776 6899999999877443
No 274
>PF03283 PAE: Pectinacetylesterase
Probab=46.20 E-value=34 Score=30.88 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhh-CCC-CcEEEEEEcHHHHHHHHHH
Q 024826 169 LGDMQEVVAHVGSK-YPK-AHLYAVGWSLGANILIRYL 204 (262)
Q Consensus 169 ~~Dl~~~l~~l~~~-~~~-~~i~lvG~SlGg~ia~~~a 204 (262)
...++++++++..+ +++ +++++.|.|.||.-+...+
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~ 174 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHA 174 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHH
Confidence 35688999999887 543 4899999999998777544
No 275
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=46.05 E-value=1.9e+02 Score=24.77 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=26.3
Q ss_pred EEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCC
Q 024826 115 VLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRG 152 (262)
Q Consensus 115 ~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG 152 (262)
++++++|...+..+.....+++.+.+.|++|.++...+
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 45666765534445666788889988999998776543
No 276
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=44.36 E-value=87 Score=24.67 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=41.3
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEE
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGW 193 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~ 193 (262)
-+...|..|.....+...+ ..+.....+++++..-+. +.. .......+.+++.++++.++...++.+|++++.
T Consensus 42 ~~~n~g~~G~t~~~~~~~l-~~~~~~~pd~Vii~~G~N---D~~-~~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~ 114 (191)
T cd01836 42 RWRLFAKTGATSADLLRQL-APLPETRFDVAVISIGVN---DVT-HLTSIARWRKQLAELVDALRAKFPGARVVVTAV 114 (191)
T ss_pred EEEEEecCCcCHHHHHHHH-HhcccCCCCEEEEEeccc---CcC-CCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECC
Confidence 3455566555443332222 223345666666643221 111 111225677899999999998888888888763
No 277
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=43.97 E-value=39 Score=29.84 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=21.8
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHHH-HHHHhCC
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHML-LRARSKG 142 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~~-~~l~~~G 142 (262)
+.+|.++-+||++|... +|+..++ +.+.+.|
T Consensus 107 p~KPLvLSfHG~tGTGK-N~Va~iiA~n~~~~G 138 (344)
T KOG2170|consen 107 PRKPLVLSFHGWTGTGK-NYVAEIIAENLYRGG 138 (344)
T ss_pred CCCCeEEEecCCCCCch-hHHHHHHHHHHHhcc
Confidence 47999999999998765 6666543 3444444
No 278
>PRK13973 thymidylate kinase; Provisional
Probab=43.41 E-value=53 Score=26.95 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=34.6
Q ss_pred cEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCC
Q 024826 114 PVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGC 153 (262)
Q Consensus 114 p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~ 153 (262)
+.+|++=|..|+........+..++...|+.|+....||.
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~ 42 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGG 42 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4678889999988888888889999999999999988873
No 279
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=43.27 E-value=43 Score=22.59 Aligned_cols=32 Identities=16% Similarity=0.343 Sum_probs=23.5
Q ss_pred EECCCCCCCCcHHHHHHHHHHHhCCceEEEEc
Q 024826 118 LMPGLTGGSEDSYVRHMLLRARSKGWRVVVFN 149 (262)
Q Consensus 118 ~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d 149 (262)
++-|..|.........++..+++.|++|+++|
T Consensus 3 ~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 3 VVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 34455555555666778888888999999998
No 280
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=43.10 E-value=44 Score=30.98 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=32.7
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNS 150 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~ 150 (262)
.+|.+|++-|..|.....-...++.++.++|++|++++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 468899999999888777777888888888999988775
No 281
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=42.77 E-value=1.2e+02 Score=23.72 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=43.4
Q ss_pred EEEEECCCCCCCCcHHHHHHHHHHHhC---CceEEEEcCCCCCCCCCCCc----CCCCcCcHHHHHHHHHHHHhhCCCCc
Q 024826 115 VLILMPGLTGGSEDSYVRHMLLRARSK---GWRVVVFNSRGCGDSPVTTP----QFYSASFLGDMQEVVAHVGSKYPKAH 187 (262)
Q Consensus 115 ~vv~lHG~~g~~~~~y~~~~~~~l~~~---G~~vv~~d~rG~G~s~~~~~----~~~~~~~~~Dl~~~l~~l~~~~~~~~ 187 (262)
.-++..|..|.........+-..+.+. ..+++++..-+ .+.... ......+.+.+..+++.+++..++.+
T Consensus 33 ~~v~N~g~~G~t~~~~~~~~~~~~~~~~~~~pd~vii~~G~---ND~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 109 (199)
T cd01838 33 LDVINRGFSGYNTRWALKVLPKIFLEEKLAQPDLVTIFFGA---NDAALPGQPQHVPLDEYKENLRKIVSHLKSLSPKTK 109 (199)
T ss_pred hheeccCCCcccHHHHHHHHHHhcCccccCCceEEEEEecC---ccccCCCCCCcccHHHHHHHHHHHHHHHHhhCCCCe
Confidence 345667776654433333333333333 46666664321 111111 11235567788999999998777888
Q ss_pred EEEEEEc
Q 024826 188 LYAVGWS 194 (262)
Q Consensus 188 i~lvG~S 194 (262)
+++++..
T Consensus 110 ii~~t~~ 116 (199)
T cd01838 110 VILITPP 116 (199)
T ss_pred EEEeCCC
Confidence 9888753
No 282
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.74 E-value=36 Score=31.13 Aligned_cols=38 Identities=21% Similarity=0.483 Sum_probs=31.3
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEc
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFN 149 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d 149 (262)
.+|.||++-|+.|+....-...++.++.++||.|+.+-
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lvc 136 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVC 136 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEe
Confidence 68999999999887776556788889999999986553
No 283
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=42.71 E-value=82 Score=26.90 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=31.0
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGC 153 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~ 153 (262)
=++++|-.|...++.++.+...+.+.|.+++-++--+.
T Consensus 54 nvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 54 NVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred ceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 46779988888888899999999999999888765433
No 284
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=42.52 E-value=20 Score=34.29 Aligned_cols=106 Identities=15% Similarity=0.108 Sum_probs=55.4
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCc-------eEEEEcCCCCCCCCCCC---c-C-CCCc----Cc---HHHHHHHH
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGW-------RVVVFNSRGCGDSPVTT---P-Q-FYSA----SF---LGDMQEVV 176 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~-------~vv~~d~rG~G~s~~~~---~-~-~~~~----~~---~~Dl~~~l 176 (262)
-|++-|.+. ..-.-...+...+.+.|. +++++|..|-=..+... + + .+.. .. ..++.+++
T Consensus 299 riv~~GAGs-AgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v 377 (559)
T PTZ00317 299 RIVFFGAGS-AAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVV 377 (559)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHH
Confidence 345556532 222222344445556787 89999999863332211 0 0 0000 00 23455555
Q ss_pred HHHHhhCCCCcEEEEEEcH-HHHHHHHHHhhcCCCCCCceEEEEcCCcChHHH
Q 024826 177 AHVGSKYPKAHLYAVGWSL-GANILIRYLGHESHSCPLSGAVSLCNPFNLVIA 228 (262)
Q Consensus 177 ~~l~~~~~~~~i~lvG~Sl-Gg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~ 228 (262)
+.++ |-+++|.|- ||.+.-.......+.++=.-+..+|+|....++
T Consensus 378 ~~~K------PtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~ 424 (559)
T PTZ00317 378 RFVK------PTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAEC 424 (559)
T ss_pred hccC------CCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCc
Confidence 5544 678999996 776665555544332112346777888764443
No 285
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=42.30 E-value=35 Score=26.96 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=22.6
Q ss_pred EECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCC
Q 024826 118 LMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRG 152 (262)
Q Consensus 118 ~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG 152 (262)
+..+-+|...+.-...++..++++|++|+++|.-.
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~ 37 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDP 37 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEEST
T ss_pred EEcCCCCccHHHHHHHHHhccccccccccccccCc
Confidence 34444344444444567888889999999999843
No 286
>COG4425 Predicted membrane protein [Function unknown]
Probab=42.23 E-value=39 Score=31.45 Aligned_cols=39 Identities=31% Similarity=0.214 Sum_probs=24.0
Q ss_pred cEEEEEEcHHHHHHHH-HHhhcCCCCCCceEEEEcCCcCh
Q 024826 187 HLYAVGWSLGANILIR-YLGHESHSCPLSGAVSLCNPFNL 225 (262)
Q Consensus 187 ~i~lvG~SlGg~ia~~-~a~~~~~~~~i~~~v~l~~p~~~ 225 (262)
|+++.|-|+|++-... ..-.+.--...+++..-++|++.
T Consensus 398 KLylhG~SLGa~~s~~~s~dl~dvl~dfdGaLwSGppf~s 437 (588)
T COG4425 398 KLYLHGESLGAMGSEAPSMDLFDVLGDFDGALWSGPPFNS 437 (588)
T ss_pred ceEEeccccccccCccccccHHHHHhhcccceecCCCCCc
Confidence 8999999999865432 10001001237787777778763
No 287
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=40.82 E-value=36 Score=32.14 Aligned_cols=41 Identities=12% Similarity=0.304 Sum_probs=35.3
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCC
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSR 151 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~r 151 (262)
...|+||++-|+.++...+-++.+...+-.+||+|+.+--|
T Consensus 296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~P 336 (493)
T TIGR03708 296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAAP 336 (493)
T ss_pred CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCCc
Confidence 36799999999998888788899999999999999888554
No 288
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=40.50 E-value=80 Score=25.49 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=22.1
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcEEEEEE
Q 024826 166 ASFLGDMQEVVAHVGSKYPKAHLYAVGW 193 (262)
Q Consensus 166 ~~~~~Dl~~~l~~l~~~~~~~~i~lvG~ 193 (262)
..+..-+..+++.+++.+|..||.++-+
T Consensus 74 ~~~~~~~~~fv~~iR~~hP~tPIllv~~ 101 (178)
T PF14606_consen 74 EEFRERLDGFVKTIREAHPDTPILLVSP 101 (178)
T ss_dssp TTHHHHHHHHHHHHHTT-SSS-EEEEE-
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEec
Confidence 5667788999999999999999999863
No 289
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.09 E-value=93 Score=23.56 Aligned_cols=71 Identities=11% Similarity=0.093 Sum_probs=40.5
Q ss_pred ECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEE
Q 024826 119 MPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGW 193 (262)
Q Consensus 119 lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~ 193 (262)
..|..|.........+...+.....+++++.. |...... ......+.+.+.++++.++...|+.++++++.
T Consensus 17 n~g~~G~~~~~~~~~~~~~~~~~~pd~vvi~~-G~ND~~~---~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 87 (157)
T cd01833 17 HEGHSGYLIDQIAAAAADWVLAAKPDVVLLHL-GTNDLVL---NRDPDTAPDRLRALIDQMRAANPDVKIIVATL 87 (157)
T ss_pred CCCCCCccHHHHHHHhhhccccCCCCEEEEec-cCccccc---CCCHHHHHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 35665655443333333444555667777754 2211111 11224566788889999988888777777653
No 290
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=39.98 E-value=1.2e+02 Score=25.21 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=37.8
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCC--CcCcHHHHHHHHHHHHhhCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFY--SASFLGDMQEVVAHVGSKYP 184 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~--~~~~~~Dl~~~l~~l~~~~~ 184 (262)
++++-|..++- -..++..+.++|++|++.+...-..... ..... .-...+++.++++.+...++
T Consensus 11 ~vlItG~s~gI----G~~la~~l~~~G~~v~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 76 (266)
T PRK06171 11 IIIVTGGSSGI----GLAIVKELLANGANVVNADIHGGDGQHE-NYQFVPTDVSSAEEVNHTVAEIIEKFG 76 (266)
T ss_pred EEEEeCCCChH----HHHHHHHHHHCCCEEEEEeCCccccccC-ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46677765433 2466778899999999988653321110 00111 12234578888888877665
No 291
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=39.62 E-value=61 Score=27.71 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=30.0
Q ss_pred EEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCC
Q 024826 115 VLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDS 156 (262)
Q Consensus 115 ~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s 156 (262)
++.++ |=+|...+....+++..++++|++|+++|.--.|..
T Consensus 3 ~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~ 43 (279)
T PRK13230 3 KFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADC 43 (279)
T ss_pred EEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccc
Confidence 35555 755555555567888899999999999998666543
No 292
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=39.55 E-value=53 Score=25.51 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=24.0
Q ss_pred EEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCC
Q 024826 117 ILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRG 152 (262)
Q Consensus 117 v~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG 152 (262)
.+..+-+|...+....+++..++++|++|+++|.--
T Consensus 3 ~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~ 38 (179)
T cd02036 3 VVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADL 38 (179)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 344433344444555678888899999999997643
No 293
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=38.80 E-value=55 Score=30.34 Aligned_cols=107 Identities=14% Similarity=0.180 Sum_probs=64.8
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEE--cC-C-----------------CCCCCCCCCcC---------
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVF--NS-R-----------------GCGDSPVTTPQ--------- 162 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~--d~-r-----------------G~G~s~~~~~~--------- 162 (262)
..|.||++-|+-|+....-...++.++.++|+.|.++ |. | -++......|.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 5789999999999888777788999999999988654 32 2 11110000010
Q ss_pred ----C-------CC--cCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCceEEE
Q 024826 163 ----F-------YS--ASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVS 218 (262)
Q Consensus 163 ----~-------~~--~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~ 218 (262)
. +. ...-+++.+=+..++......-+.+|=-|+=|.-+.+.|..+.+.-.|.++|+
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIl 246 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVIL 246 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEE
Confidence 0 00 00011222222333332223357777788888999999998887766777654
No 294
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=38.41 E-value=36 Score=29.16 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=46.5
Q ss_pred eEEEEcCCCCCCCCCCC--c--CC---CC--cCcHHHHHHHHHHHHhhCCCCcEEEEEEcH-HHHHHHHHHhhcCCCCCC
Q 024826 144 RVVVFNSRGCGDSPVTT--P--QF---YS--ASFLGDMQEVVAHVGSKYPKAHLYAVGWSL-GANILIRYLGHESHSCPL 213 (262)
Q Consensus 144 ~vv~~d~rG~G~s~~~~--~--~~---~~--~~~~~Dl~~~l~~l~~~~~~~~i~lvG~Sl-Gg~ia~~~a~~~~~~~~i 213 (262)
+++.+|..|.=..+... + .. +. .....|+.++++.++ +-+++|.|- ||.+.-.........++=
T Consensus 61 ~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~k------ptvlIG~S~~~g~ft~evv~~Ma~~~~~ 134 (254)
T cd00762 61 RIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAK------PDFLIGVSRVGGAFTPEVIRAXAEINER 134 (254)
T ss_pred cEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhC------CCEEEEeCCCCCCCCHHHHHHHhhcCCC
Confidence 78999999863332211 1 00 11 112235666666655 568999999 887777766655422212
Q ss_pred ceEEEEcCCcChHHH
Q 024826 214 SGAVSLCNPFNLVIA 228 (262)
Q Consensus 214 ~~~v~l~~p~~~~~~ 228 (262)
.-+..+++|....++
T Consensus 135 PIIFaLSNPt~~aE~ 149 (254)
T cd00762 135 PVIFALSNPTSKAEC 149 (254)
T ss_pred CEEEECCCcCCcccc
Confidence 346788888875444
No 295
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=37.99 E-value=1.3e+02 Score=24.62 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=46.6
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCC-----CC-cC-CCCcCcHHHHHH------HHHHH
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPV-----TT-PQ-FYSASFLGDMQE------VVAHV 179 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~-----~~-~~-~~~~~~~~Dl~~------~l~~l 179 (262)
.+.|++++-..+. .+.+...+...+.+.|..+..+...-....+. .. .. ....+.+..+.. .++.+
T Consensus 29 ~~~i~~iptA~~~-~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i 107 (210)
T cd03129 29 GARVLFIPTASGD-RDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAI 107 (210)
T ss_pred CCeEEEEeCCCCC-hHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHH
Confidence 4556777654333 34566677777888898877555432111110 00 00 011222222221 22333
Q ss_pred HhhCCCCcEEEEEEcHHHHHHHHH
Q 024826 180 GSKYPKAHLYAVGWSLGANILIRY 203 (262)
Q Consensus 180 ~~~~~~~~i~lvG~SlGg~ia~~~ 203 (262)
.+.+- +-..++|.|.|++++...
T Consensus 108 ~~~~~-~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 108 LKRVA-RGVVIGGTSAGAAVMGET 130 (210)
T ss_pred HHHHH-cCCeEEEcCHHHHHhhhc
Confidence 33332 257899999999999886
No 296
>PRK13768 GTPase; Provisional
Probab=37.91 E-value=49 Score=28.08 Aligned_cols=36 Identities=14% Similarity=0.361 Sum_probs=29.0
Q ss_pred EEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcC
Q 024826 115 VLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNS 150 (262)
Q Consensus 115 ~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~ 150 (262)
.++++-|.+|...+.....+...+...|.+|+++|.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~ 38 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNL 38 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEEC
Confidence 366777887777777778888888889999999875
No 297
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=37.83 E-value=26 Score=29.15 Aligned_cols=88 Identities=18% Similarity=0.216 Sum_probs=51.5
Q ss_pred CcEEEEECCCCCCCC-cHHHHHHHHHHHhCCceEEEEcCCCCCCCCCC-----CcCCCC-cCcHHHHHHHHHH------H
Q 024826 113 SPVLILMPGLTGGSE-DSYVRHMLLRARSKGWRVVVFNSRGCGDSPVT-----TPQFYS-ASFLGDMQEVVAH------V 179 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~-~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~-----~~~~~~-~~~~~Dl~~~l~~------l 179 (262)
.+.|.+++-.++.+. ..|+......+.+.|+.+.-++.----..... ....|. .+.+-++...+.. +
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~LL~~lke~gld~iI 111 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQELKETGLDDII 111 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHHHHHHHHHhCcHHHH
Confidence 567899987665554 34888888889999999988775311100000 011111 4455555544322 2
Q ss_pred HhhCCCCcEEEEEEcHHHHHHH
Q 024826 180 GSKYPKAHLYAVGWSLGANILI 201 (262)
Q Consensus 180 ~~~~~~~~i~lvG~SlGg~ia~ 201 (262)
+++..+ =+..+|.|.|++++.
T Consensus 112 r~~vk~-G~~YiG~SAGA~ia~ 132 (224)
T COG3340 112 RERVKA-GTPYIGWSAGANIAG 132 (224)
T ss_pred HHHHHc-CCceEEeccCceeec
Confidence 222222 366899999999874
No 298
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=37.65 E-value=1.9e+02 Score=22.42 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=44.1
Q ss_pred cEEEEECCCCCCCCcHHHH----HHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEE
Q 024826 114 PVLILMPGLTGGSEDSYVR----HMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLY 189 (262)
Q Consensus 114 p~vv~lHG~~g~~~~~y~~----~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~ 189 (262)
.+.+.-.|..|.....+.+ .....+.+...+++++..-. .+..........+.+.+..+++.+++..+..+|+
T Consensus 24 ~~~v~N~g~~G~t~~~~~~~~~~~~~~~l~~~~pd~Vii~~G~---ND~~~~~~~~~~~~~~~~~li~~i~~~~~~~~iv 100 (189)
T cd01825 24 GVIYDNLGVNGASASLLLKWDAEFLQAQLAALPPDLVILSYGT---NEAFNKQLNASEYRQQLREFIKRLRQILPNASIL 100 (189)
T ss_pred ceEEecCccCchhhhhhhccCHHHHHHHHhhCCCCEEEEECCC---cccccCCCCHHHHHHHHHHHHHHHHHHCCCCeEE
Confidence 3455666666644322211 11113445567777776421 2211111123567788999999999888888999
Q ss_pred EEEE
Q 024826 190 AVGW 193 (262)
Q Consensus 190 lvG~ 193 (262)
++|.
T Consensus 101 ~~~~ 104 (189)
T cd01825 101 LVGP 104 (189)
T ss_pred EEcC
Confidence 9985
No 299
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=37.50 E-value=55 Score=25.51 Aligned_cols=39 Identities=10% Similarity=0.351 Sum_probs=29.2
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCG 154 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G 154 (262)
|+.+-|..|+........++..+.++|++|.++..-+++
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~ 39 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHHD 39 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 355568777777677788888888889999998765443
No 300
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=37.38 E-value=1.9e+02 Score=22.18 Aligned_cols=13 Identities=23% Similarity=0.440 Sum_probs=5.9
Q ss_pred HHHhCCceEEEEc
Q 024826 137 RARSKGWRVVVFN 149 (262)
Q Consensus 137 ~l~~~G~~vv~~d 149 (262)
.+.+.+-+++++.
T Consensus 96 ~~~~~~~~vil~~ 108 (177)
T cd01822 96 TAQARGAPVLLVG 108 (177)
T ss_pred HHHHCCCeEEEEe
Confidence 3333455555444
No 301
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=36.64 E-value=43 Score=28.03 Aligned_cols=36 Identities=22% Similarity=0.590 Sum_probs=31.2
Q ss_pred EEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcC
Q 024826 115 VLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNS 150 (262)
Q Consensus 115 ~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~ 150 (262)
++|++.|+.|+....+-+.++..|.+.+++|+...-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 378999999999888889999999999999987654
No 302
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=36.52 E-value=35 Score=27.42 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=44.6
Q ss_pred HhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcC
Q 024826 139 RSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHES 208 (262)
Q Consensus 139 ~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~ 208 (262)
...+|+-+++- +++.....+...++.+.+.++++|.+.. -.-.+|.++|++.++.++.-.+
T Consensus 59 ~~~~yDGlIIT-----GApve~~~fe~v~Yw~El~~i~dwa~~~----v~stl~iCWgaqaal~~~yGi~ 119 (175)
T cd03131 59 RDAKFDGLIVT-----GAPVEHLPFEQVDYWEELTEILDWAKTH----VTSTLFSCWAAMAALYYFYGIK 119 (175)
T ss_pred cccCCCEEEEe-----CCCcccCCccccchHHHHHHHHHHHHHh----CcchHHHHHHHHHHHHHHcCcc
Confidence 35677777764 4554434444467788899999999976 4678899999999999886553
No 303
>PRK05670 anthranilate synthase component II; Provisional
Probab=35.95 E-value=93 Score=24.93 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHHhCCceEEEEcCCCCCCCCC--CCcC--CCC--cCcHHH---HHHHHHHHHhhCCCCcEEEEEEcHHHH
Q 024826 128 DSYVRHMLLRARSKGWRVVVFNSRGCGDSPV--TTPQ--FYS--ASFLGD---MQEVVAHVGSKYPKAHLYAVGWSLGAN 198 (262)
Q Consensus 128 ~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~--~~~~--~~~--~~~~~D---l~~~l~~l~~~~~~~~i~lvG~SlGg~ 198 (262)
++|...+++.+.+.|+.+.++.+-.-+.... ..+. ..+ .+...| ...+++.+. .++=++|.++|..
T Consensus 9 d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~-----~~~PvLGIClG~Q 83 (189)
T PRK05670 9 DSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGISLELIREFA-----GKVPILGVCLGHQ 83 (189)
T ss_pred CchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHcchHHHHHHHhc-----CCCCEEEECHHHH
Confidence 4667788888888999887776532110000 0000 000 111223 233333322 1355899999999
Q ss_pred HHHHHHhh
Q 024826 199 ILIRYLGH 206 (262)
Q Consensus 199 ia~~~a~~ 206 (262)
++..+++-
T Consensus 84 lla~alGg 91 (189)
T PRK05670 84 AIGEAFGG 91 (189)
T ss_pred HHHHHhCC
Confidence 99988863
No 304
>CHL00175 minD septum-site determining protein; Validated
Probab=35.86 E-value=84 Score=26.82 Aligned_cols=38 Identities=13% Similarity=0.363 Sum_probs=26.7
Q ss_pred cEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCC
Q 024826 114 PVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSR 151 (262)
Q Consensus 114 p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~r 151 (262)
.+|.+.-|-+|...+....+++..+++.|++|+++|.-
T Consensus 16 ~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D 53 (281)
T CHL00175 16 RIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDAD 53 (281)
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 45555555555545455567788889999999999874
No 305
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=35.71 E-value=68 Score=28.66 Aligned_cols=37 Identities=19% Similarity=0.388 Sum_probs=32.4
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVF 148 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~ 148 (262)
++|.|+++=|..|.....-+..++.++.+.|++|+..
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vlla 173 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLA 173 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEE
Confidence 6799999999988777766789999999999999876
No 306
>PRK10824 glutaredoxin-4; Provisional
Probab=35.12 E-value=1.9e+02 Score=21.48 Aligned_cols=82 Identities=12% Similarity=0.153 Sum_probs=52.3
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAV 191 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lv 191 (262)
..++||+.-|......+.|.......|.+.|...-.+|.-. + .++++.+.......--..|++=
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~--------------d--~~~~~~l~~~sg~~TVPQIFI~ 77 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ--------------N--PDIRAELPKYANWPTFPQLWVD 77 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC--------------C--HHHHHHHHHHhCCCCCCeEEEC
Confidence 57899999987766677777777777777774433344310 0 2345555444322111279999
Q ss_pred EEcHHHHHHHHHHhhcCC
Q 024826 192 GWSLGANILIRYLGHESH 209 (262)
Q Consensus 192 G~SlGg~ia~~~a~~~~~ 209 (262)
|...||.--+.-+.+.++
T Consensus 78 G~~IGG~ddl~~l~~~G~ 95 (115)
T PRK10824 78 GELVGGCDIVIEMYQRGE 95 (115)
T ss_pred CEEEcChHHHHHHHHCCC
Confidence 999999977776666554
No 307
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.08 E-value=2.3e+02 Score=26.32 Aligned_cols=74 Identities=14% Similarity=0.117 Sum_probs=36.9
Q ss_pred HHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCc
Q 024826 135 LLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLS 214 (262)
Q Consensus 135 ~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~ 214 (262)
...+.+.+++++++|..|....+ ....+.+..+++......+...+.++--+.|..-+...+..+ ....++
T Consensus 292 ~~~l~~~~~D~VLIDTaGr~~rd--------~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f-~~~~~~ 362 (432)
T PRK12724 292 KETLARDGSELILIDTAGYSHRN--------LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY-ESLNYR 362 (432)
T ss_pred HHHHHhCCCCEEEEeCCCCCccC--------HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh-cCCCCC
Confidence 34444579999999987764221 122233333333322222233455555555554555555555 223355
Q ss_pred eEE
Q 024826 215 GAV 217 (262)
Q Consensus 215 ~~v 217 (262)
++|
T Consensus 363 glI 365 (432)
T PRK12724 363 RIL 365 (432)
T ss_pred EEE
Confidence 544
No 308
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=35.03 E-value=75 Score=24.77 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=24.8
Q ss_pred EEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCC
Q 024826 117 ILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCG 154 (262)
Q Consensus 117 v~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G 154 (262)
.+.-+-+|...+.....++..+++.|++|+++|.--.+
T Consensus 3 ~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~ 40 (169)
T cd02037 3 AVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYG 40 (169)
T ss_pred EEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 34444444444444567788888899999999865443
No 309
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=34.76 E-value=67 Score=26.57 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=27.4
Q ss_pred EEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCC
Q 024826 115 VLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCG 154 (262)
Q Consensus 115 ~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G 154 (262)
+|.+..+-+|...+....+++..++++|++|+++|.-..|
T Consensus 3 iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~ 42 (246)
T TIGR03371 3 VIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQN 42 (246)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 3445544444444455567788888999999999986554
No 310
>PRK09739 hypothetical protein; Provisional
Probab=34.66 E-value=2.1e+02 Score=23.08 Aligned_cols=69 Identities=14% Similarity=0.179 Sum_probs=36.4
Q ss_pred cEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCC----C--CcCcHHHHHHHHHHHHhh
Q 024826 114 PVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQF----Y--SASFLGDMQEVVAHVGSK 182 (262)
Q Consensus 114 p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~----~--~~~~~~Dl~~~l~~l~~~ 182 (262)
-++|..|-..++........++..+.+.|+.+..+|+......+...... . .....+|+.+.++.+...
T Consensus 6 iliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A 80 (199)
T PRK09739 6 IYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEH 80 (199)
T ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhC
Confidence 34444555443333334455666677789999999876543222211110 0 012346677777777653
No 311
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=34.52 E-value=3e+02 Score=23.70 Aligned_cols=75 Identities=12% Similarity=0.160 Sum_probs=44.6
Q ss_pred HHHHHHHHh-CCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCC
Q 024826 132 RHMLLRARS-KGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHS 210 (262)
Q Consensus 132 ~~~~~~l~~-~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~ 210 (262)
......+.+ .+++++++|..|....+ ...+.++.+.+...-|...+.++.-++++.-+...+..+..
T Consensus 143 ~~~l~~l~~~~~~D~ViIDt~Gr~~~~-----------~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~- 210 (270)
T PRK06731 143 TRALTYFKEEARVDYILIDTAGKNYRA-----------SETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD- 210 (270)
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCcCC-----------HHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCC-
Confidence 344444543 48999999998885322 12333344433333344345566677888888888877654
Q ss_pred CCCceEEE
Q 024826 211 CPLSGAVS 218 (262)
Q Consensus 211 ~~i~~~v~ 218 (262)
..++++|+
T Consensus 211 ~~~~~~I~ 218 (270)
T PRK06731 211 IHIDGIVF 218 (270)
T ss_pred CCCCEEEE
Confidence 35666553
No 312
>COG4451 RbcS Ribulose bisphosphate carboxylase small subunit [Energy production and conversion]
Probab=34.41 E-value=2e+02 Score=21.60 Aligned_cols=64 Identities=13% Similarity=0.208 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCceEE--EEcCCCCCCCCCCCcC--CCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEc
Q 024826 131 VRHMLLRARSKGWRVV--VFNSRGCGDSPVTTPQ--FYSASFLGDMQEVVAHVGSKYPKAHLYAVGWS 194 (262)
Q Consensus 131 ~~~~~~~l~~~G~~vv--~~d~rG~G~s~~~~~~--~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~S 194 (262)
....+++++.+||..- -.|-|-.-....+... ++...-+.|+.+-++..+..+++.-|-++|+-
T Consensus 24 i~~QVrylL~QGykigvE~~d~rrprtgsWt~wg~p~f~~~~~~evlaele~Cr~dhp~eYIRliGfD 91 (127)
T COG4451 24 IAEQVRYLLSQGYKIGVEYVDDRRPRTGSWTMWGTPMFGAKTAGEVLAELEACRADHPGEYIRLIGFD 91 (127)
T ss_pred HHHHHHHHHhCCcccceeecccCCcccceeeecCCccccccchHHHHHHHHHHHHhCCCCeEEEEEec
Confidence 4567888999999752 2333322111111111 13345577888899999999999999999974
No 313
>PRK06523 short chain dehydrogenase; Provisional
Probab=34.21 E-value=2.4e+02 Score=23.30 Aligned_cols=64 Identities=22% Similarity=0.151 Sum_probs=37.0
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCC--CcCcHHHHHHHHHHHHhhCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFY--SASFLGDMQEVVAHVGSKYP 184 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~--~~~~~~Dl~~~l~~l~~~~~ 184 (262)
.+++.|..++-. ..++..+.++|++|++.+......... .-... .-...+++.++++.+.+.++
T Consensus 11 ~vlItGas~gIG----~~ia~~l~~~G~~v~~~~r~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (260)
T PRK06523 11 RALVTGGTKGIG----AATVARLLEAGARVVTTARSRPDDLPE-GVEFVAADLTTAEGCAAVARAVLERLG 76 (260)
T ss_pred EEEEECCCCchh----HHHHHHHHHCCCEEEEEeCChhhhcCC-ceeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 567777665443 466778888999999987642211110 00011 12234567777777776655
No 314
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=33.88 E-value=83 Score=24.93 Aligned_cols=40 Identities=10% Similarity=0.349 Sum_probs=34.5
Q ss_pred EEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCC
Q 024826 115 VLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCG 154 (262)
Q Consensus 115 ~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G 154 (262)
.|+-+-|+-++.....+..++..+.++||+|.++-+-+|+
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~ 42 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHD 42 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence 4677778877777788889999999999999999999987
No 315
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=33.84 E-value=3.2e+02 Score=25.53 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCceEEEEcCCCCC
Q 024826 132 RHMLLRARSKGWRVVVFNSRGCG 154 (262)
Q Consensus 132 ~~~~~~l~~~G~~vv~~d~rG~G 154 (262)
+.-+..+...+|+|+.+|--|.-
T Consensus 172 k~al~~ak~~~~DvvIvDTAGRl 194 (451)
T COG0541 172 KAALEKAKEEGYDVVIVDTAGRL 194 (451)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcc
Confidence 45566778889999999987764
No 316
>PRK10867 signal recognition particle protein; Provisional
Probab=33.50 E-value=69 Score=29.72 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=31.5
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhC-CceEEEEcC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSK-GWRVVVFNS 150 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~-G~~vv~~d~ 150 (262)
..|.++++-|..|.........++.++.+. |++|.+++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~ 137 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA 137 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 457888888999888877778888888888 998877664
No 317
>PRK12467 peptide synthase; Provisional
Probab=33.20 E-value=2e+02 Score=34.67 Aligned_cols=86 Identities=16% Similarity=0.106 Sum_probs=52.5
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEE
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVG 192 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG 192 (262)
.+.++..|...+... .| ..+...+ ..+..++++..++.-.-... ...+..-.....+++++..+..+..+.|
T Consensus 3692 ~~~l~~~h~~~r~~~-~~-~~l~~~l-~~~~~~~~l~~~~~~~d~~~-----~~~~~~~~~~y~~~~~~~~~~~p~~l~g 3763 (3956)
T PRK12467 3692 FPALFCRHEGLGTVF-DY-EPLAVIL-EGDRHVLGLTCRHLLDDGWQ-----DTSLQAMAVQYADYILWQQAKGPYGLLG 3763 (3956)
T ss_pred ccceeeechhhcchh-hh-HHHHHHh-CCCCcEEEEeccccccccCC-----ccchHHHHHHHHHHHHHhccCCCeeeee
Confidence 355889998776554 22 3333333 44678888877665322211 1122222334556666665667899999
Q ss_pred EcHHHHHHHHHHhh
Q 024826 193 WSLGANILIRYLGH 206 (262)
Q Consensus 193 ~SlGg~ia~~~a~~ 206 (262)
+|+||.++..++..
T Consensus 3764 ~s~g~~~a~~~~~~ 3777 (3956)
T PRK12467 3764 WSLGGTLARLVAEL 3777 (3956)
T ss_pred eecchHHHHHHHHH
Confidence 99999998877654
No 318
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=33.10 E-value=2.2e+02 Score=22.06 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=37.2
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEE
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGW 193 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~ 193 (262)
-++--|.+|...................+++++.+ |.-... ........+.+++..+++.++. ++.++++++.
T Consensus 41 ~~~N~g~~G~~~~~~~~~~~~~~~~~~~d~vii~~-G~ND~~--~~~~~~~~~~~~~~~~i~~i~~--~~~~vil~~~ 113 (185)
T cd01832 41 EYANLAVRGRRTAQILAEQLPAALALRPDLVTLLA-GGNDIL--RPGTDPDTYRADLEEAVRRLRA--AGARVVVFTI 113 (185)
T ss_pred eEeeccCCcchHHHHHHHHHHHHHhcCCCEEEEec-cccccc--cCCCCHHHHHHHHHHHHHHHHh--CCCEEEEecC
Confidence 34455665554332222222333345667777754 221111 1122235566778888888873 4556777753
No 319
>PF04084 ORC2: Origin recognition complex subunit 2 ; InterPro: IPR007220 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. This entry represents subunit 2, which binds the origin of replication. It plays a role in chromosome replication and mating type transcriptional silencing.; GO: 0006260 DNA replication, 0000808 origin recognition complex, 0005634 nucleus
Probab=33.06 E-value=2.4e+02 Score=25.07 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=51.3
Q ss_pred EEECCCCCCCCcHHHHHHHHHHHhCC--ceEEEEcC--CCCCCCCC--------CCc-CCCCcCcHHHHHHHHHHHHhhC
Q 024826 117 ILMPGLTGGSEDSYVRHMLLRARSKG--WRVVVFNS--RGCGDSPV--------TTP-QFYSASFLGDMQEVVAHVGSKY 183 (262)
Q Consensus 117 v~lHG~~g~~~~~y~~~~~~~l~~~G--~~vv~~d~--rG~G~s~~--------~~~-~~~~~~~~~Dl~~~l~~l~~~~ 183 (262)
|+++|++ + ....+..++..+.... +.|+++|- |++.--+. ... ........+-+..+++.+....
T Consensus 57 lL~YG~G-S-Kr~lL~~Fa~~~l~~~~~~~~vvvnGy~p~~~~k~il~~I~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~ 134 (326)
T PF04084_consen 57 LLFYGYG-S-KRKLLNDFAEKYLSDWGDGPVVVVNGYFPSLSIKDILNTIEEALLPEPSKKPKSPSEQLDFIISYLESRP 134 (326)
T ss_pred EEEEecC-h-HHHHHHHHHHHHhhccCCCcEEEEEccCCCCcHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHhccC
Confidence 7778873 2 3355666666665553 67777773 22211000 000 1111222334445555555543
Q ss_pred CCCcEEEEEEcHHHHH--------HHHHHhhcCCCCCCceEEEEcC
Q 024826 184 PKAHLYAVGWSLGANI--------LIRYLGHESHSCPLSGAVSLCN 221 (262)
Q Consensus 184 ~~~~i~lvG~SlGg~i--------a~~~a~~~~~~~~i~~~v~l~~ 221 (262)
...+++++=|+.=|-. ++..++..|. |.-++.+..
T Consensus 135 ~~~~l~lvIHnIDg~~LR~~~~Q~~La~LA~~p~---I~lIASiDh 177 (326)
T PF04084_consen 135 SPPPLYLVIHNIDGPSLRNEKAQSLLAQLASIPN---IHLIASIDH 177 (326)
T ss_pred CCCceEEEEECCCChhhcChHHHHHHHHHHcCCC---eEEEEeccC
Confidence 3568999999887665 3344444554 554444443
No 320
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=32.90 E-value=56 Score=28.85 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=21.5
Q ss_pred HHHHHhhC-CCCcEEEEEEcHHHHHHHHHHh
Q 024826 176 VAHVGSKY-PKAHLYAVGWSLGANILIRYLG 205 (262)
Q Consensus 176 l~~l~~~~-~~~~i~lvG~SlGg~ia~~~a~ 205 (262)
.+.+.++. +..+.++.|||+|=+.++..++
T Consensus 74 ~~~l~~~~~~~~p~~~aGHSlGEysAl~~ag 104 (310)
T COG0331 74 YRVLAEQGLGVKPDFVAGHSLGEYSALAAAG 104 (310)
T ss_pred HHHHHHhcCCCCCceeecccHhHHHHHHHcc
Confidence 34444444 5668899999999888876665
No 321
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=32.88 E-value=80 Score=29.36 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=32.6
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSR 151 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~r 151 (262)
..|.++++-|..|.....-...++..+.+.|++|.+++.-
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 3577888889998888777778888888899999888753
No 322
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.76 E-value=97 Score=24.10 Aligned_cols=27 Identities=11% Similarity=0.289 Sum_probs=19.8
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcEEEEE
Q 024826 166 ASFLGDMQEVVAHVGSKYPKAHLYAVG 192 (262)
Q Consensus 166 ~~~~~Dl~~~l~~l~~~~~~~~i~lvG 192 (262)
..+.+.+.++++.+++..+..+|++++
T Consensus 85 ~~~~~~l~~~v~~~~~~~~~~~ii~~~ 111 (191)
T cd01834 85 EKFKTNLRRLIDRLKNKESAPRIVLVS 111 (191)
T ss_pred HHHHHHHHHHHHHHHcccCCCcEEEEC
Confidence 456678888888887656666777764
No 323
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=32.47 E-value=63 Score=27.39 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=25.7
Q ss_pred CCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCC
Q 024826 121 GLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGD 155 (262)
Q Consensus 121 G~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~ 155 (262)
|=+|...+....+++..++++|++|+++|.--.|.
T Consensus 7 gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~ 41 (267)
T cd02032 7 GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHD 41 (267)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 75454445556678888999999999999865443
No 324
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=32.43 E-value=83 Score=21.67 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=33.0
Q ss_pred cCcHHHHHHHHHHHHhhC---CCCcEEEEEEcHHHHHHHHHHhhcCCC
Q 024826 166 ASFLGDMQEVVAHVGSKY---PKAHLYAVGWSLGANILIRYLGHESHS 210 (262)
Q Consensus 166 ~~~~~Dl~~~l~~l~~~~---~~~~i~lvG~SlGg~ia~~~a~~~~~~ 210 (262)
.+....+.+.+++++.+. +..++.++|-|-|=.++.+.++.+...
T Consensus 17 ~GC~~~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~g 64 (78)
T PF12242_consen 17 VGCARNVENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAG 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCC
Confidence 345678888888888742 234799999999999999988887543
No 325
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=32.31 E-value=80 Score=24.79 Aligned_cols=34 Identities=15% Similarity=0.012 Sum_probs=23.8
Q ss_pred HHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCC
Q 024826 175 VVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESH 209 (262)
Q Consensus 175 ~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~ 209 (262)
+++.+.++ +-..-.+.|.|.|+.++..|+...+.
T Consensus 16 vl~aL~e~-gi~~d~v~GtSaGAi~aa~~a~g~~~ 49 (172)
T cd07198 16 VAKALRER-GPLIDIIAGTSAGAIVAALLASGRDL 49 (172)
T ss_pred HHHHHHHc-CCCCCEEEEECHHHHHHHHHHcCCCH
Confidence 44444443 22266799999999999999986543
No 326
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=32.11 E-value=99 Score=27.56 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=27.1
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCC
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSR 151 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~r 151 (262)
+..+|.+.|-+|...+.....++..++++|++|+++|.-
T Consensus 30 ~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D 68 (329)
T cd02033 30 KTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCD 68 (329)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEee
Confidence 344555557655555555567778889999999988763
No 327
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=32.09 E-value=2.7e+02 Score=22.41 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=37.6
Q ss_pred EEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhC
Q 024826 117 ILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKY 183 (262)
Q Consensus 117 v~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~ 183 (262)
|++.|.-|.-. ...++.+...+|-|..+|.--.-..+..--......|++.-..+++.+.+..
T Consensus 6 VivYGGkGALG----Sacv~~FkannywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL 68 (236)
T KOG4022|consen 6 VIVYGGKGALG----SACVEFFKANNYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSL 68 (236)
T ss_pred EEEEcCcchHh----HHHHHHHHhcCeEEEEEeecccccccceEEecCCcchhHHHHHHHHHHHHhh
Confidence 44555444322 3456678889999999998544333222122334677777777777776543
No 328
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=32.05 E-value=96 Score=24.84 Aligned_cols=42 Identities=10% Similarity=0.206 Sum_probs=32.2
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCC
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCG 154 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G 154 (262)
.+.|+.+=|..|+.....+..++..+..+|++|-++-+-+++
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~~ 46 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 455777779888777778888888888889988777665554
No 329
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=31.99 E-value=1.4e+02 Score=22.89 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=27.0
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNS 150 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~ 150 (262)
||++-|..|+..+.+.+.+...+...|+.++.+|.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~ 35 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG 35 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 46677988888877777777777778888888763
No 330
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=31.94 E-value=61 Score=27.67 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=18.0
Q ss_pred CCcEEEEEEcHHHHHHHHHHhh
Q 024826 185 KAHLYAVGWSLGANILIRYLGH 206 (262)
Q Consensus 185 ~~~i~lvG~SlGg~ia~~~a~~ 206 (262)
-.+-.++|||+|=..++..++.
T Consensus 82 i~p~~v~GhS~GE~aAa~~aG~ 103 (290)
T TIGR00128 82 LKPDFAAGHSLGEYSALVAAGA 103 (290)
T ss_pred CCCCEEeecCHHHHHHHHHhCC
Confidence 5688999999999888776653
No 331
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=31.90 E-value=97 Score=26.07 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=28.8
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDS 156 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s 156 (262)
|.++ |=+|...+....+++..++++|++|+++|.--.|.+
T Consensus 4 iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~ 43 (270)
T cd02040 4 IAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADS 43 (270)
T ss_pred EEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCc
Confidence 4455 654544555667888899999999999998666543
No 332
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.87 E-value=44 Score=27.11 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=27.8
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVT 159 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~ 159 (262)
-|=+||++-.....-+..++..+.+.|.+|+.+-. |.|.|.+.
T Consensus 98 ~LDLHG~tq~eAr~~L~~Fi~~a~~~~~rcv~Vih-GkG~s~g~ 140 (184)
T COG2840 98 RLDLHGLTQEEARQELGAFIARARAEGLRCVLVIH-GKGRSKGS 140 (184)
T ss_pred eeeccCCCHHHHHHHHHHHHHHHHHhCCcEEEEEe-CCCcCCCC
Confidence 46689998655445566777777778887765543 55545543
No 333
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=31.87 E-value=26 Score=27.18 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhCCceEEEEcCCC
Q 024826 130 YVRHMLLRARSKGWRVVVFNSRG 152 (262)
Q Consensus 130 y~~~~~~~l~~~G~~vv~~d~rG 152 (262)
|+..+...+.+.|+.+..++...
T Consensus 1 y~~~~~~~f~~~g~~v~~l~~~~ 23 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEVDQLDLSD 23 (154)
T ss_dssp HHHHHHHHHHHCT-EEEECCCTS
T ss_pred CHHHHHHHHHHCCCEEEEEeccC
Confidence 45667778888999988888754
No 334
>PRK06490 glutamine amidotransferase; Provisional
Probab=31.86 E-value=3.1e+02 Score=23.03 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=45.3
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCC-CCCCCC--CC-------CcCC---C-CcCcHHHHHHHHH
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSR-GCGDSP--VT-------TPQF---Y-SASFLGDMQEVVA 177 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~r-G~G~s~--~~-------~~~~---~-~~~~~~Dl~~~l~ 177 (262)
...++|+.|--.+.. ..+...+.+.|+.+-+++.. |- ..+ .. ++.. + ...|..++.++++
T Consensus 7 ~~~vlvi~h~~~~~~-----g~l~~~l~~~g~~~~v~~~~~~~-~~p~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~ 80 (239)
T PRK06490 7 KRPVLIVLHQERSTP-----GRVGQLLQERGYPLDIRRPRLGD-PLPDTLEDHAGAVIFGGPMSANDPDDFIRREIDWIS 80 (239)
T ss_pred CceEEEEecCCCCCC-----hHHHHHHHHCCCceEEEeccCCC-CCCCcccccCEEEEECCCCCCCCCchHHHHHHHHHH
Confidence 455667778543322 34556677888877766532 11 010 00 0000 1 1234444445554
Q ss_pred HHHhhCCCCcEEEEEEcHHHHHHHHHHh
Q 024826 178 HVGSKYPKAHLYAVGWSLGANILIRYLG 205 (262)
Q Consensus 178 ~l~~~~~~~~i~lvG~SlGg~ia~~~a~ 205 (262)
..... .+=++|.++|..++..+++
T Consensus 81 ~~~~~----~~PvLGIC~G~Qlla~alG 104 (239)
T PRK06490 81 VPLKE----NKPFLGICLGAQMLARHLG 104 (239)
T ss_pred HHHHC----CCCEEEECHhHHHHHHHcC
Confidence 43332 4569999999999998875
No 335
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=31.68 E-value=3.1e+02 Score=22.90 Aligned_cols=87 Identities=14% Similarity=0.162 Sum_probs=43.5
Q ss_pred CCcEEEEECCCC-CCCCcH-HHHHHHHHHHhCCceEEEEcCCCCCCCCC---CCcC-------------------CCCcC
Q 024826 112 DSPVLILMPGLT-GGSEDS-YVRHMLLRARSKGWRVVVFNSRGCGDSPV---TTPQ-------------------FYSAS 167 (262)
Q Consensus 112 ~~p~vv~lHG~~-g~~~~~-y~~~~~~~l~~~G~~vv~~d~rG~G~s~~---~~~~-------------------~~~~~ 167 (262)
..+.|+++-|-. .+|... ........+...|..+-.+|++..-.-+. ..+. .|+..
T Consensus 25 ~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEYn~s 104 (219)
T TIGR02690 25 HIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPERHGA 104 (219)
T ss_pred CCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCccccC
Confidence 456677777743 222222 22222333344689998888753211110 0000 12222
Q ss_pred cHHHHHHHHHHHHhh------CCCCcEEEEEEcHHHHH
Q 024826 168 FLGDMQEVVAHVGSK------YPKAHLYAVGWSLGANI 199 (262)
Q Consensus 168 ~~~Dl~~~l~~l~~~------~~~~~i~lvG~SlGg~i 199 (262)
...-+..+++|+... +...++.++|.| ||..
T Consensus 105 ipg~LKNaiDwls~~~~~~~~~~~KpvaivgaS-gg~~ 141 (219)
T TIGR02690 105 ITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVS-GGSQ 141 (219)
T ss_pred cCHHHHHHHHhcccCcccccccCCCcEEEEEeC-CcHh
Confidence 333456677777653 234579999998 5433
No 336
>PRK06696 uridine kinase; Validated
Probab=31.56 E-value=1.1e+02 Score=25.20 Aligned_cols=38 Identities=13% Similarity=0.379 Sum_probs=30.2
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEc
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFN 149 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d 149 (262)
+.|.+|.+-|..|+..+.....++..+.+.|..++.+.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~ 57 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRAS 57 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 57899999999888887776777777777788887744
No 337
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=31.38 E-value=1.7e+02 Score=24.75 Aligned_cols=57 Identities=25% Similarity=0.274 Sum_probs=34.2
Q ss_pred cCCCCeEEEEeecCCCCCC----------CCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCC
Q 024826 91 TKDDGSVALDWISGDHQLL----------PPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGC 153 (262)
Q Consensus 91 ~~dg~~i~l~~~~~~~~~~----------~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~ 153 (262)
..-|+.+.+.+.+-..... -.++|.++++ | ..+. ...++..+...||+|.++|.|.-
T Consensus 68 l~CGG~v~v~iep~~~~~~~~~~~~~~~~~~p~~~L~If-G---aG~v--a~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 68 QCCGGAVTLLFEPLDAADLAELEWLTETEAPPAPHVVLF-G---AGHV--GRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCCCEEEEEEEECCchhHHHHHHHhhhccCCCCEEEEE-C---CcHH--HHHHHHHHhcCCCEEEEEeCCcc
Confidence 3457777777654321000 0245666666 2 2222 35677777888999999998844
No 338
>PRK05541 adenylylsulfate kinase; Provisional
Probab=31.37 E-value=77 Score=24.85 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=29.7
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEc
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFN 149 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d 149 (262)
.+|.+|++-|..|+..+...+.+...+...+..++.+|
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 46779999999988887776777777777777777775
No 339
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=31.14 E-value=71 Score=29.74 Aligned_cols=101 Identities=19% Similarity=0.236 Sum_probs=64.7
Q ss_pred CcEEEEECCCCCC--CCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCC-CcCcHHHHHHHHHHHHhhCCCCcEE
Q 024826 113 SPVLILMPGLTGG--SEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFY-SASFLGDMQEVVAHVGSKYPKAHLY 189 (262)
Q Consensus 113 ~p~vv~lHG~~g~--~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~-~~~~~~Dl~~~l~~l~~~~~~~~i~ 189 (262)
..-||+++|++-. ..+.-++.+++.|.++|.+|-.-=+|=-|+-++.-...- -.+.--|...-+|.+..++++..+.
T Consensus 306 A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPVAGRMPGHMNVLLAEA~VPYd~v~eMdeIN~~F~~tDva 385 (462)
T PRK09444 306 SHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFADTDTV 385 (462)
T ss_pred CCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceeEEeecCCCHHHHHhHHhhccccccCCEE
Confidence 3458999998621 222346778888888999986555555554443211111 1233356666778888889888888
Q ss_pred EEEEcHHHHHHHHHHhhcCCCCCCceE
Q 024826 190 AVGWSLGANILIRYLGHESHSCPLSGA 216 (262)
Q Consensus 190 lvG~SlGg~ia~~~a~~~~~~~~i~~~ 216 (262)
++ .|++=..+=+++..+.++|.+.
T Consensus 386 lV---IGANDvVNPaA~~dp~SpIyGM 409 (462)
T PRK09444 386 LV---IGANDTVNPAAQEDPNSPIAGM 409 (462)
T ss_pred EE---ecCccCCCcccccCCCCCcCCC
Confidence 87 7888888877776444556553
No 340
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=31.11 E-value=1.6e+02 Score=26.37 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCceEE-EEcCCCCCCC
Q 024826 130 YVRHMLLRARSKGWRVV-VFNSRGCGDS 156 (262)
Q Consensus 130 y~~~~~~~l~~~G~~vv-~~d~rG~G~s 156 (262)
-++.++.++.++|..|+ -+|.|||..+
T Consensus 71 di~eiv~yA~~rgI~vIPEID~PGH~~a 98 (348)
T cd06562 71 DVKEIVEYARLRGIRVIPEIDTPGHTGS 98 (348)
T ss_pred HHHHHHHHHHHcCCEEEEeccCchhhHH
Confidence 36888999999999987 7999999754
No 341
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=31.04 E-value=32 Score=33.08 Aligned_cols=106 Identities=17% Similarity=0.141 Sum_probs=53.3
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHh-CCc-------eEEEEcCCCCCCCCCCC-cCCCCcC------cHHHHHHHHHHHH
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARS-KGW-------RVVVFNSRGCGDSPVTT-PQFYSAS------FLGDMQEVVAHVG 180 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~-~G~-------~vv~~d~rG~G~s~~~~-~~~~~~~------~~~Dl~~~l~~l~ 180 (262)
-|++.|.+. ..-.-.+.+...+.+ .|. +++++|..|-=..+... -..+... ...++.++++.++
T Consensus 323 riv~~GAGs-Agigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 401 (581)
T PLN03129 323 RILFAGAGE-AGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIK 401 (581)
T ss_pred eEEEECCCH-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccC
Confidence 455566532 221222333344443 376 89999999863332211 0000011 1234555555544
Q ss_pred hhCCCCcEEEEEEcH-HHHHHHHHHhhcCCCCCCceEEEEcCCcChHHH
Q 024826 181 SKYPKAHLYAVGWSL-GANILIRYLGHESHSCPLSGAVSLCNPFNLVIA 228 (262)
Q Consensus 181 ~~~~~~~i~lvG~Sl-Gg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~~~ 228 (262)
+-+++|.|- ||.+.-.........++=.-+..+|+|....++
T Consensus 402 ------ptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~ 444 (581)
T PLN03129 402 ------PTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNPTSKAEC 444 (581)
T ss_pred ------CCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCc
Confidence 568999995 676655555544211112346778888765443
No 342
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=30.77 E-value=1.9e+02 Score=24.91 Aligned_cols=89 Identities=8% Similarity=-0.098 Sum_probs=44.2
Q ss_pred CCCcHHHHHHHHHHHhC-CceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHH-HHHHHH
Q 024826 125 GSEDSYVRHMLLRARSK-GWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLG-ANILIR 202 (262)
Q Consensus 125 ~~~~~y~~~~~~~l~~~-G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlG-g~ia~~ 202 (262)
.-+..-++.+++++.+. |.+-+++. +|.+....++..+..+-++.+++... .+--.++|.+-. -.-+..
T Consensus 17 ~iD~~~~~~~i~~l~~~~Gv~gi~~~-----GstGE~~~Lt~~Er~~~~~~~~~~~~----~~~~viagv~~~~~~~ai~ 87 (288)
T cd00954 17 EINEDVLRAIVDYLIEKQGVDGLYVN-----GSTGEGFLLSVEERKQIAEIVAEAAK----GKVTLIAHVGSLNLKESQE 87 (288)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEEC-----cCCcCcccCCHHHHHHHHHHHHHHhC----CCCeEEeccCCCCHHHHHH
Confidence 34445567888888888 99888775 23333233332333333334444433 222345566533 223333
Q ss_pred HHhhcCCCCCCceEEEEcCCc
Q 024826 203 YLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 203 ~a~~~~~~~~i~~~v~l~~p~ 223 (262)
++... .+..+++++++.|.+
T Consensus 88 ~a~~a-~~~Gad~v~~~~P~y 107 (288)
T cd00954 88 LAKHA-EELGYDAISAITPFY 107 (288)
T ss_pred HHHHH-HHcCCCEEEEeCCCC
Confidence 33322 222367766555544
No 343
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=30.41 E-value=1.1e+02 Score=21.22 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=19.0
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceE
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRV 145 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~v 145 (262)
.++++||+|++. . . + ...+..|.+.||.+
T Consensus 60 ~~~~ivv~C~~G--~-r-s--~~aa~~L~~~G~~~ 88 (100)
T cd01523 60 DDQEVTVICAKE--G-S-S--QFVAELLAERGYDV 88 (100)
T ss_pred CCCeEEEEcCCC--C-c-H--HHHHHHHHHcCcee
Confidence 367888888743 1 1 1 24456788899983
No 344
>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.25 E-value=2e+02 Score=23.40 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=45.2
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCc--C--CCC---cCcHHHHHHHHHHHHhhCC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTP--Q--FYS---ASFLGDMQEVVAHVGSKYP 184 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~--~--~~~---~~~~~Dl~~~l~~l~~~~~ 184 (262)
.+..|-++.|...+- -+..++.++++|-.|+..|+|..++.+.... . .+. -.-.+|+++++...+.+|+
T Consensus 7 ~kglvalvtggasgl----g~ataerlakqgasv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfg 82 (260)
T KOG1199|consen 7 TKGLVALVTGGASGL----GKATAERLAKQGASVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFG 82 (260)
T ss_pred hcCeeEEeecCcccc----cHHHHHHHHhcCceEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhcc
Confidence 456677777754332 2456788999999999999998765532110 0 111 1224688998888877765
No 345
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=30.14 E-value=81 Score=27.72 Aligned_cols=33 Identities=21% Similarity=0.117 Sum_probs=23.1
Q ss_pred HHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcC
Q 024826 175 VVAHVGSKYPKAHLYAVGWSLGANILIRYLGHES 208 (262)
Q Consensus 175 ~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~ 208 (262)
+++.+.+. +-..=.++|.|+|+.++..|+...+
T Consensus 33 vL~aLee~-gi~~d~v~GtSaGAi~ga~ya~g~~ 65 (306)
T cd07225 33 VIKALEEA-GIPVDMVGGTSIGAFIGALYAEERN 65 (306)
T ss_pred HHHHHHHc-CCCCCEEEEECHHHHHHHHHHcCCC
Confidence 44444443 2225579999999999999998643
No 346
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=30.05 E-value=1e+02 Score=26.16 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=27.1
Q ss_pred CCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCC
Q 024826 120 PGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDS 156 (262)
Q Consensus 120 HG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s 156 (262)
-|=+|...+....+++..++++|++|+++|.-..|..
T Consensus 6 ~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~ 42 (275)
T TIGR01287 6 YGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADS 42 (275)
T ss_pred eCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence 3755555555567888889999999999998655543
No 347
>PLN02335 anthranilate synthase
Probab=30.04 E-value=1.9e+02 Score=24.06 Aligned_cols=86 Identities=14% Similarity=0.128 Sum_probs=44.7
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCC--CCcCC--CC--cCcHHHHHHHHHHHHhhCCCC
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPV--TTPQF--YS--ASFLGDMQEVVAHVGSKYPKA 186 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~--~~~~~--~~--~~~~~Dl~~~l~~l~~~~~~~ 186 (262)
.+.|+++... ++|...+++++.+.|+.+.++..--..-.+. ..+.. -+ .....|.....+.++.. + .
T Consensus 18 ~~~ilviD~~-----dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~-~-~ 90 (222)
T PLN02335 18 NGPIIVIDNY-----DSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLEL-G-P 90 (222)
T ss_pred cCcEEEEECC-----CCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhccchHHHHHHh-C-C
Confidence 4557777643 2445577888989999887775421000000 00000 00 11122322233434332 1 2
Q ss_pred cEEEEEEcHHHHHHHHHHh
Q 024826 187 HLYAVGWSLGANILIRYLG 205 (262)
Q Consensus 187 ~i~lvG~SlGg~ia~~~a~ 205 (262)
.+=++|.++|..+...+++
T Consensus 91 ~~PiLGIClG~QlLa~alG 109 (222)
T PLN02335 91 LVPLFGVCMGLQCIGEAFG 109 (222)
T ss_pred CCCEEEecHHHHHHHHHhC
Confidence 4568999999998887765
No 348
>PF09757 Arb2: Arb2 domain; InterPro: IPR019154 The fission yeast Argonaute siRNA chaperone (ARC) complex contains the Argonaute protein Ago1 and two previously uncharacterised proteins, Arb1 and Arb2, both of which are required for histone H3 Lys9 (H3-K9) methylation, heterochromatin assembly and siRNA generation []. This entry represents a region found in both Arb2 and the Hda1 protein. ; PDB: 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G.
Probab=30.01 E-value=17 Score=29.11 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred CCcEEEEECCCCC----------CCCcHHHHH-HHHHHHhCCceEEEEcCCCC
Q 024826 112 DSPVLILMPGLTG----------GSEDSYVRH-MLLRARSKGWRVVVFNSRGC 153 (262)
Q Consensus 112 ~~p~vv~lHG~~g----------~~~~~y~~~-~~~~l~~~G~~vv~~d~rG~ 153 (262)
.+.+||++||.+. +-+..-... +++++.+.||.|+++|..-.
T Consensus 98 ~~~llViih~~g~~wa~~~~~~~~l~~gs~~~~~i~~A~~~~~gVI~~N~~~~ 150 (178)
T PF09757_consen 98 AKKLLVIIHGSGVIWARRLIINGGLDSGSQIPQYIKWALKEGYGVIDLNPNQN 150 (178)
T ss_dssp -----------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5678888898542 000000112 56677888999999987543
No 349
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=29.79 E-value=86 Score=25.75 Aligned_cols=36 Identities=31% Similarity=0.537 Sum_probs=29.4
Q ss_pred EEECCCCCCCCcHHHHHHHHHHH-hCCceEEEEcCCC
Q 024826 117 ILMPGLTGGSEDSYVRHMLLRAR-SKGWRVVVFNSRG 152 (262)
Q Consensus 117 v~lHG~~g~~~~~y~~~~~~~l~-~~G~~vv~~d~rG 152 (262)
+.+=|.+|+..+..+..++..+. +.+..++++|.-|
T Consensus 26 ~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~G 62 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHG 62 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 45568888877777888888888 8999999999844
No 350
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=29.79 E-value=1.1e+02 Score=24.91 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=26.4
Q ss_pred CCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCC
Q 024826 121 GLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDS 156 (262)
Q Consensus 121 G~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s 156 (262)
|=+|...+....+++..+++.|++|+++|.--.|.+
T Consensus 7 gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~ 42 (212)
T cd02117 7 GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADS 42 (212)
T ss_pred CCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCc
Confidence 644444445567888899999999999997766543
No 351
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=29.44 E-value=2e+02 Score=24.96 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=18.9
Q ss_pred CCCCcHHHHHHHHHHHhCCceEEEEc
Q 024826 124 GGSEDSYVRHMLLRARSKGWRVVVFN 149 (262)
Q Consensus 124 g~~~~~y~~~~~~~l~~~G~~vv~~d 149 (262)
|.-+..-+..+++++.+.|.+-+++.
T Consensus 16 g~iD~~~l~~lv~~~~~~Gv~gi~v~ 41 (294)
T TIGR02313 16 GDIDEEALRELIEFQIEGGSHAISVG 41 (294)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEC
Confidence 33444556788888899999888775
No 352
>PRK14974 cell division protein FtsY; Provisional
Probab=29.39 E-value=4.1e+02 Score=23.71 Aligned_cols=72 Identities=18% Similarity=0.324 Sum_probs=37.6
Q ss_pred HHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCCCCc
Q 024826 135 LLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLS 214 (262)
Q Consensus 135 ~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~~i~ 214 (262)
+......|++++++|-.|....+ ....+.+..+.+.+ .|. .++++.-+.-|.-+..-+..+.....+.
T Consensus 215 i~~~~~~~~DvVLIDTaGr~~~~--------~~lm~eL~~i~~~~---~pd-~~iLVl~a~~g~d~~~~a~~f~~~~~~~ 282 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGRMHTD--------ANLMDELKKIVRVT---KPD-LVIFVGDALAGNDAVEQAREFNEAVGID 282 (336)
T ss_pred HHHHHhCCCCEEEEECCCccCCc--------HHHHHHHHHHHHhh---CCc-eEEEeeccccchhHHHHHHHHHhcCCCC
Confidence 33445678999999988775432 22233343333322 233 3445555555655555555443322355
Q ss_pred eEEE
Q 024826 215 GAVS 218 (262)
Q Consensus 215 ~~v~ 218 (262)
++|+
T Consensus 283 giIl 286 (336)
T PRK14974 283 GVIL 286 (336)
T ss_pred EEEE
Confidence 5543
No 353
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=29.39 E-value=1.3e+02 Score=23.93 Aligned_cols=39 Identities=15% Similarity=0.374 Sum_probs=31.9
Q ss_pred cEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCC
Q 024826 114 PVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRG 152 (262)
Q Consensus 114 p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG 152 (262)
+.+|++=|..|+..+...+.+...+...|+.|+....|+
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~ 41 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPG 41 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 467899999998887777888888888899998776664
No 354
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=29.23 E-value=1.8e+02 Score=25.77 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=26.0
Q ss_pred CCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCC
Q 024826 124 GGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPV 158 (262)
Q Consensus 124 g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~ 158 (262)
|......+..++..+.++|+++.++ .||+|+...
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~Il-SRGYg~~~~ 80 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAIL-SRGYGRKSK 80 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEEE-cCCCCCCCC
Confidence 4445677888899999999997665 679987643
No 355
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=29.17 E-value=1.2e+02 Score=25.06 Aligned_cols=41 Identities=20% Similarity=0.401 Sum_probs=36.1
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCC
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGC 153 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~ 153 (262)
++.+|.+-|+.|+..+.....+...+.++|+.|+..--||.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~ 42 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGG 42 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 45689999999988888888888999999999999998887
No 356
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=28.99 E-value=41 Score=14.28 Aligned_cols=9 Identities=33% Similarity=0.958 Sum_probs=5.8
Q ss_pred CCCCCCCCC
Q 024826 54 RPYSPFPVI 62 (262)
Q Consensus 54 ~~y~p~p~~ 62 (262)
+||.|+|..
T Consensus 2 kpfw~ppiy 10 (12)
T PF08248_consen 2 KPFWPPPIY 10 (12)
T ss_pred CccCCCCcc
Confidence 567776654
No 357
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=28.70 E-value=3.2e+02 Score=25.14 Aligned_cols=82 Identities=12% Similarity=0.171 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCC--------CcCc------------HH-HHHHHHHHHHhhCCC---Cc
Q 024826 132 RHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFY--------SASF------------LG-DMQEVVAHVGSKYPK---AH 187 (262)
Q Consensus 132 ~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~--------~~~~------------~~-Dl~~~l~~l~~~~~~---~~ 187 (262)
..+...+.+.|..|+.+|.--.+..... +... ..++ .+ -...+.+.+.+.+.. .-
T Consensus 18 ~yl~~~i~~~G~~v~~iDvg~~~~~~~~-~di~~~eVa~~~g~~~~~~~~~~dRg~ai~~M~~ga~~~v~~l~~~g~i~G 96 (403)
T PF06792_consen 18 LYLRDQIEAQGVEVLLIDVGTLGEPSFP-PDISREEVARAAGDSIEAVRSSGDRGEAIEAMARGAARFVSDLYDEGKIDG 96 (403)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCCCCCCC-CCcCHHHHHHhcCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhcCCccE
Confidence 4555667789999999997544433221 1100 0000 00 112233344444432 35
Q ss_pred EEEEEEcHHHHHHHHHHhhcCCCCCCceE
Q 024826 188 LYAVGWSLGANILIRYLGHESHSCPLSGA 216 (262)
Q Consensus 188 i~lvG~SlGg~ia~~~a~~~~~~~~i~~~ 216 (262)
|..+|-|.|..++.......|-- +.++
T Consensus 97 vi~~GGs~GT~lat~aMr~LPiG--~PKl 123 (403)
T PF06792_consen 97 VIGIGGSGGTALATAAMRALPIG--FPKL 123 (403)
T ss_pred EEEecCCccHHHHHHHHHhCCCC--CCeE
Confidence 78999999999999999988865 5553
No 358
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=28.50 E-value=1.5e+02 Score=23.77 Aligned_cols=36 Identities=8% Similarity=0.365 Sum_probs=23.7
Q ss_pred EEEECCCCCCC-CcHHHHHHHHHHHhCCceEEEEcCC
Q 024826 116 LILMPGLTGGS-EDSYVRHMLLRARSKGWRVVVFNSR 151 (262)
Q Consensus 116 vv~lHG~~g~~-~~~y~~~~~~~l~~~G~~vv~~d~r 151 (262)
+|.+-+..|+. .......++..+++.|++|+++|.-
T Consensus 19 vI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 19 VLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 44444433333 3344567778888999999999864
No 359
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.48 E-value=71 Score=25.57 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=45.7
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceE-EEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEE
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRV-VVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAV 191 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~v-v~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lv 191 (262)
.-.||++-|++..+ +-+.++ ....++++ ++.||+...- + -|.. +.+ .|.++
T Consensus 11 d~LIvyFaGwgtpp--s~v~HL---ilpeN~dl~lcYDY~dl~l-d------------fDfs-Ay~---------hirlv 62 (214)
T COG2830 11 DHLIVYFAGWGTPP--SAVNHL---ILPENHDLLLCYDYQDLNL-D------------FDFS-AYR---------HIRLV 62 (214)
T ss_pred CEEEEEEecCCCCH--HHHhhc---cCCCCCcEEEEeehhhcCc-c------------cchh-hhh---------hhhhh
Confidence 34788888885433 223433 35566665 5778764420 0 0111 111 47799
Q ss_pred EEcHHHHHHHHHHhhcCCCCCCceEEEEcC
Q 024826 192 GWSLGANILIRYLGHESHSCPLSGAVSLCN 221 (262)
Q Consensus 192 G~SlGg~ia~~~a~~~~~~~~i~~~v~l~~ 221 (262)
.+|||=.++-+.+...+ ++.++++.+
T Consensus 63 AwSMGVwvAeR~lqg~~----lksatAiNG 88 (214)
T COG2830 63 AWSMGVWVAERVLQGIR----LKSATAING 88 (214)
T ss_pred hhhHHHHHHHHHHhhcc----ccceeeecC
Confidence 99999999988887665 445555554
No 360
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=28.42 E-value=1.7e+02 Score=20.92 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=21.9
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEc
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFN 149 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d 149 (262)
+++++||+|.+... .. ....+..+.+.||+|..++
T Consensus 63 ~~~~vvvyc~~g~~--~~--s~~~a~~l~~~G~~v~~l~ 97 (110)
T cd01521 63 KEKLFVVYCDGPGC--NG--ATKAALKLAELGFPVKEMI 97 (110)
T ss_pred CCCeEEEEECCCCC--ch--HHHHHHHHHHcCCeEEEec
Confidence 36789999975321 11 2344567788899866553
No 361
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=28.38 E-value=3.1e+02 Score=21.87 Aligned_cols=40 Identities=13% Similarity=0.269 Sum_probs=31.8
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSR 151 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~r 151 (262)
.+..+|.+.|+.|+..+...=.+.+.+.++|--++.+|--
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGD 68 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGD 68 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCc
Confidence 5678999999988877655456677888999999998843
No 362
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=28.33 E-value=4.7e+02 Score=23.97 Aligned_cols=89 Identities=9% Similarity=0.029 Sum_probs=51.3
Q ss_pred CcEEEEECCCC-----CCCCcHHHHHHHHHHHhCCceEE-EEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCC
Q 024826 113 SPVLILMPGLT-----GGSEDSYVRHMLLRARSKGWRVV-VFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKA 186 (262)
Q Consensus 113 ~p~vv~lHG~~-----g~~~~~y~~~~~~~l~~~G~~vv-~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~ 186 (262)
+..||++||=. .+.....+..++....++|+-.+ =+-|.|+| .+..+|...+-..+...
T Consensus 171 ~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~-----------~GleeDa~~lR~~a~~~---- 235 (396)
T COG1448 171 EGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFA-----------DGLEEDAYALRLFAEVG---- 235 (396)
T ss_pred CCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhc-----------cchHHHHHHHHHHHHhC----
Confidence 34588888733 12223334677777777776542 24455664 23345555444444433
Q ss_pred cEEEEEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCc
Q 024826 187 HLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 187 ~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~ 223 (262)
+-+++..|+--+.. .|+++ +-+..+++.--
T Consensus 236 ~~~lva~S~SKnfg-----LYgER--VGa~~vva~~~ 265 (396)
T COG1448 236 PELLVASSFSKNFG-----LYGER--VGALSVVAEDA 265 (396)
T ss_pred CcEEEEehhhhhhh-----hhhhc--cceeEEEeCCH
Confidence 22677778776654 57777 77777776543
No 363
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=28.32 E-value=1.1e+02 Score=25.20 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHHHhCCceEEEEcCCC
Q 024826 127 EDSYVRHMLLRARSKGWRVVVFNSRG 152 (262)
Q Consensus 127 ~~~y~~~~~~~l~~~G~~vv~~d~rG 152 (262)
.+....+++..++++|++|+++|.--
T Consensus 14 KTt~a~~LA~~la~~g~~VlliD~D~ 39 (251)
T TIGR01969 14 KTTITANLGVALAKLGKKVLALDADI 39 (251)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 33445677888899999999999754
No 364
>PRK10279 hypothetical protein; Provisional
Probab=28.23 E-value=86 Score=27.52 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=23.1
Q ss_pred HHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhc
Q 024826 175 VVAHVGSKYPKAHLYAVGWSLGANILIRYLGHE 207 (262)
Q Consensus 175 ~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~ 207 (262)
+++.+.+. +-..=.++|.|+|+.++..|+...
T Consensus 23 VL~aL~E~-gi~~d~i~GtS~GAlvga~yA~g~ 54 (300)
T PRK10279 23 VINALKKV-GIEIDIVAGCSIGSLVGAAYACDR 54 (300)
T ss_pred HHHHHHHc-CCCcCEEEEEcHHHHHHHHHHcCC
Confidence 44455443 233677999999999999999754
No 365
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=28.20 E-value=3.1e+02 Score=21.88 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCceEEEEcCCCCCCCCCC-------CcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHH
Q 024826 129 SYVRHMLLRARSKGWRVVVFNSRGCGDSPVT-------TPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILI 201 (262)
Q Consensus 129 ~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~-------~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~ 201 (262)
+|...++..+.+.|+.+.+++.......... .+.........++.++++.+. ..+=++|.++|..+..
T Consensus 12 sf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~~~d~iIi~gGp~~~~~~~~~~~~i~~~~-----~~~PiLGIClG~Qlla 86 (190)
T PRK06895 12 SFTFNLVDLIRKLGVPMQVVNVEDLDLDEVENFSHILISPGPDVPRAYPQLFAMLERYH-----QHKSILGVCLGHQTLC 86 (190)
T ss_pred chHHHHHHHHHHcCCcEEEEECCccChhHhccCCEEEECCCCCChHHhhHHHHHHHHhc-----CCCCEEEEcHHHHHHH
Confidence 3445677888888987777664211000000 111111112233334443321 2455999999999998
Q ss_pred HHHh
Q 024826 202 RYLG 205 (262)
Q Consensus 202 ~~a~ 205 (262)
.+++
T Consensus 87 ~~~G 90 (190)
T PRK06895 87 EFFG 90 (190)
T ss_pred HHhC
Confidence 8875
No 366
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=28.18 E-value=2.2e+02 Score=24.86 Aligned_cols=64 Identities=16% Similarity=0.234 Sum_probs=34.9
Q ss_pred EECCCCCCCCcHHHHHHHHHHHhCCceEEEE------cCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHh--hCCCCcEE
Q 024826 118 LMPGLTGGSEDSYVRHMLLRARSKGWRVVVF------NSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGS--KYPKAHLY 189 (262)
Q Consensus 118 ~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~------d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~--~~~~~~i~ 189 (262)
++||..|++.. +..+...|++|+++ |++|+|...+. ..-.+++.++++.+.. ....=...
T Consensus 10 Vv~G~vGn~AA------~f~lq~~G~~V~~vpTV~fSnHtgyg~~~g~------v~~~e~l~~~l~~l~~~~~~~~~dav 77 (281)
T COG2240 10 VVYGSVGNSAA------IFPLQRLGLDVWAVPTVQFSNHTGYGKWTGI------VMPPEQLADLLNGLEAIDKLGECDAV 77 (281)
T ss_pred EeecccccHhH------HHHHHHcCCceeeeceEEecCCCCCCCCCCc------CCCHHHHHHHHHHHHhcccccccCEE
Confidence 46787776543 33567789987665 56777764322 1223444555555444 22222456
Q ss_pred EEEE
Q 024826 190 AVGW 193 (262)
Q Consensus 190 lvG~ 193 (262)
+-|+
T Consensus 78 ltGY 81 (281)
T COG2240 78 LTGY 81 (281)
T ss_pred EEcc
Confidence 6665
No 367
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=28.16 E-value=1e+02 Score=28.54 Aligned_cols=39 Identities=23% Similarity=0.469 Sum_probs=30.9
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHH-hCCceEEEEcC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRAR-SKGWRVVVFNS 150 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~-~~G~~vv~~d~ 150 (262)
.+|.++++-|..|.........++.++. +.|++|.++|.
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~ 136 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVAC 136 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4688999999998888777778887775 57998877764
No 368
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=27.97 E-value=4e+02 Score=23.53 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=15.6
Q ss_pred HHHHhCCceEEEEcCCCCCC
Q 024826 136 LRARSKGWRVVVFNSRGCGD 155 (262)
Q Consensus 136 ~~l~~~G~~vv~~d~rG~G~ 155 (262)
......+|+++++|.+|...
T Consensus 190 ~~~~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 190 QAAKARGIDVLIIDTAGRLH 209 (318)
T ss_pred HHHHhCCCCEEEEeCCCCCc
Confidence 34456899999999998854
No 369
>PRK06114 short chain dehydrogenase; Provisional
Probab=27.91 E-value=2.3e+02 Score=23.37 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=35.9
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCC---------CCCcCCC--CcCcHHHHHHHHHHHHhhCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSP---------VTTPQFY--SASFLGDMQEVVAHVGSKYP 184 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~---------~~~~~~~--~~~~~~Dl~~~l~~l~~~~~ 184 (262)
++++.|..++- -..++..+.+.|++|++.+.+...... ....... .-...+++.++++.+...++
T Consensus 10 ~~lVtG~s~gI----G~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 85 (254)
T PRK06114 10 VAFVTGAGSGI----GQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELG 85 (254)
T ss_pred EEEEECCCchH----HHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45555654432 256778889999999998865321100 0000011 12234567778887776654
No 370
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=27.82 E-value=1e+02 Score=24.51 Aligned_cols=34 Identities=15% Similarity=-0.088 Sum_probs=23.4
Q ss_pred HHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcC
Q 024826 174 EVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHES 208 (262)
Q Consensus 174 ~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~ 208 (262)
.+++.+.+. +...=.++|.|.||.+++.++....
T Consensus 16 Gvl~~L~e~-~~~~d~i~GtSaGai~aa~~a~g~~ 49 (194)
T cd07207 16 GALKALEEA-GILKKRVAGTSAGAITAALLALGYS 49 (194)
T ss_pred HHHHHHHHc-CCCcceEEEECHHHHHHHHHHcCCC
Confidence 344555443 2224679999999999999997543
No 371
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=27.75 E-value=2.2e+02 Score=24.57 Aligned_cols=89 Identities=11% Similarity=0.079 Sum_probs=44.1
Q ss_pred CCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHH
Q 024826 125 GSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYL 204 (262)
Q Consensus 125 ~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a 204 (262)
.-+..-+..+++++.+.|.+-+++. +|.+....+..++..+=++.+++.+.. .-++ ++|.+.+-.-+..++
T Consensus 17 ~iD~~~l~~l~~~l~~~Gv~gi~v~-----GstGE~~~Ls~eEr~~l~~~~~~~~~~---~~pv-i~gv~~~t~~~i~~a 87 (289)
T cd00951 17 SFDEDAYRAHVEWLLSYGAAALFAA-----GGTGEFFSLTPDEYAQVVRAAVEETAG---RVPV-LAGAGYGTATAIAYA 87 (289)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEC-----cCCcCcccCCHHHHHHHHHHHHHHhCC---CCCE-EEecCCCHHHHHHHH
Confidence 3344446778888999999888875 343322333223333333344444332 2233 344443444445544
Q ss_pred hhcCCCCCCceEEEEcCCc
Q 024826 205 GHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 205 ~~~~~~~~i~~~v~l~~p~ 223 (262)
... ++..+++++++.|.+
T Consensus 88 ~~a-~~~Gad~v~~~pP~y 105 (289)
T cd00951 88 QAA-EKAGADGILLLPPYL 105 (289)
T ss_pred HHH-HHhCCCEEEECCCCC
Confidence 433 222367755554444
No 372
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=27.67 E-value=72 Score=26.48 Aligned_cols=36 Identities=6% Similarity=0.297 Sum_probs=25.8
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEc
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFN 149 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d 149 (262)
.+-||++|...... ...+..++..+.++||+.+.++
T Consensus 186 ~g~IiLlHd~~~~t-~~aL~~ii~~lk~~Gy~fvtl~ 221 (224)
T TIGR02884 186 PGAILLLHAVSKDN-AEALDKIIKDLKEQGYTFKSLD 221 (224)
T ss_pred CCcEEEEECCCCCH-HHHHHHHHHHHHHCCCEEEEhH
Confidence 34689999743222 2356788899999999998764
No 373
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=27.65 E-value=4.5e+02 Score=24.37 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=16.7
Q ss_pred HHHHHHhCCceEEEEcCCCCCC
Q 024826 134 MLLRARSKGWRVVVFNSRGCGD 155 (262)
Q Consensus 134 ~~~~l~~~G~~vv~~d~rG~G~ 155 (262)
....+...+|+++++|..|...
T Consensus 174 al~~~~~~~~DvVIIDTaGr~~ 195 (428)
T TIGR00959 174 ALEYAKENGFDVVIVDTAGRLQ 195 (428)
T ss_pred HHHHHHhcCCCEEEEeCCCccc
Confidence 3445567899999999998753
No 374
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=27.56 E-value=2.6e+02 Score=20.69 Aligned_cols=79 Identities=14% Similarity=0.231 Sum_probs=44.6
Q ss_pred CcEEEEECCCCCCCCcHHHHHH--HHHHHhCCceEEEEcCCCCCCCCCCCc-CCCCcCcHHHHHHHHHHHHhhCCCCcEE
Q 024826 113 SPVLILMPGLTGGSEDSYVRHM--LLRARSKGWRVVVFNSRGCGDSPVTTP-QFYSASFLGDMQEVVAHVGSKYPKAHLY 189 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~--~~~l~~~G~~vv~~d~rG~G~s~~~~~-~~~~~~~~~Dl~~~l~~l~~~~~~~~i~ 189 (262)
....+...|.+|.......... .........+++++.. |..+.... ......+.+.+..+++.+++..+..+++
T Consensus 34 ~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~~~d~vil~~---G~ND~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vv 110 (187)
T cd00229 34 PGVEVINLGVSGATTADALRRLGLRLALLKDKPDLVIIEL---GTNDLGRGGDTSIDEFKANLEELLDALRERAPGAKVI 110 (187)
T ss_pred CCceEEeecccchhHHHHHhhcchhhhhccCCCCEEEEEe---cccccccccccCHHHHHHHHHHHHHHHHHHCCCCcEE
Confidence 3445555566555443332222 2334455677777765 22222111 1122456678888889888777777888
Q ss_pred EEEEc
Q 024826 190 AVGWS 194 (262)
Q Consensus 190 lvG~S 194 (262)
+++..
T Consensus 111 ~~~~~ 115 (187)
T cd00229 111 LITPP 115 (187)
T ss_pred EEeCC
Confidence 88765
No 375
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.43 E-value=2.9e+02 Score=21.45 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=22.2
Q ss_pred CcHHHHHHHHHHHHhhCCCCcEEEEE
Q 024826 167 SFLGDMQEVVAHVGSKYPKAHLYAVG 192 (262)
Q Consensus 167 ~~~~Dl~~~l~~l~~~~~~~~i~lvG 192 (262)
.+.+++..+++.+++.+|..+|++++
T Consensus 75 ~~~~~~~~~i~~i~~~~p~~~iil~~ 100 (177)
T cd01844 75 MVRERLGPLVKGLRETHPDTPILLVS 100 (177)
T ss_pred HHHHHHHHHHHHHHHHCcCCCEEEEe
Confidence 56788899999999888888888887
No 376
>PHA02518 ParA-like protein; Provisional
Probab=27.36 E-value=1.7e+02 Score=23.36 Aligned_cols=29 Identities=10% Similarity=0.233 Sum_probs=21.8
Q ss_pred CcHHHHHHHHHHHhCCceEEEEcCCCCCC
Q 024826 127 EDSYVRHMLLRARSKGWRVVVFNSRGCGD 155 (262)
Q Consensus 127 ~~~y~~~~~~~l~~~G~~vv~~d~rG~G~ 155 (262)
...-..+++..++++|++|+++|.--.+.
T Consensus 14 KTT~a~~la~~la~~g~~vlliD~D~q~~ 42 (211)
T PHA02518 14 KTTVATNLASWLHADGHKVLLVDLDPQGS 42 (211)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 33445677788899999999999865553
No 377
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=27.32 E-value=94 Score=25.01 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=28.9
Q ss_pred CCcEEEEECCCCCCCC-cHHHHHHHHHHHhCCceEEEEcCCCCCC
Q 024826 112 DSPVLILMPGLTGGSE-DSYVRHMLLRARSKGWRVVVFNSRGCGD 155 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~-~~y~~~~~~~l~~~G~~vv~~d~rG~G~ 155 (262)
.+++++++||.....- -.....+...|.+.|..+...-+++.|.
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH 187 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGH 187 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SS
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCC
Confidence 4678999999754322 1223466778888898777777666654
No 378
>PRK14974 cell division protein FtsY; Provisional
Probab=27.21 E-value=1.3e+02 Score=26.95 Aligned_cols=38 Identities=21% Similarity=0.499 Sum_probs=32.0
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEc
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFN 149 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d 149 (262)
.+|.++++-|..|.....-+..++..+.+.|++|++++
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~ 175 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA 175 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 46889999999888887777888888888999998776
No 379
>PRK07856 short chain dehydrogenase; Provisional
Probab=27.11 E-value=1.7e+02 Score=24.16 Aligned_cols=65 Identities=17% Similarity=0.120 Sum_probs=36.7
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCC--CcCcHHHHHHHHHHHHhhCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFY--SASFLGDMQEVVAHVGSKYP 184 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~--~~~~~~Dl~~~l~~l~~~~~ 184 (262)
.+++-|.+++- -..++..+.++|++|++.+.+.-........... .....+++.++++.+.+.++
T Consensus 8 ~~lItGas~gI----G~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 74 (252)
T PRK07856 8 VVLVTGGTRGI----GAGIARAFLAAGATVVVCGRRAPETVDGRPAEFHAADVRDPDQVAALVDAIVERHG 74 (252)
T ss_pred EEEEeCCCchH----HHHHHHHHHHCCCEEEEEeCChhhhhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45667765433 2467778889999999987653210000001111 12234567778888777655
No 380
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=26.94 E-value=1.1e+02 Score=26.35 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=18.0
Q ss_pred CCCcEEEEEEcHHHHHHHHHHh
Q 024826 184 PKAHLYAVGWSLGANILIRYLG 205 (262)
Q Consensus 184 ~~~~i~lvG~SlGg~ia~~~a~ 205 (262)
+..+-.++|||+|=..++..++
T Consensus 74 g~~P~~v~GhS~GE~aAa~~aG 95 (295)
T TIGR03131 74 LPRPSAVAGYSVGEYAAAVVAG 95 (295)
T ss_pred CCCCcEEeecCHHHHHHHHHhC
Confidence 4468899999999988877665
No 381
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=26.90 E-value=2.4e+02 Score=22.40 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=26.4
Q ss_pred CcHHHHHHHHHHHHhhCCCCcEEEEEEcHHH
Q 024826 167 SFLGDMQEVVAHVGSKYPKAHLYAVGWSLGA 197 (262)
Q Consensus 167 ~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg 197 (262)
-.+..+.+.++.+.++|++.-|.++=-|+|-
T Consensus 68 VHA~NL~e~l~~I~~~~~~~~IIAIDAcLG~ 98 (163)
T PF06866_consen 68 VHALNLEETLNEIKKKHPNPFIIAIDACLGR 98 (163)
T ss_pred cchhhHHHHHHHHHHHCCCCeEEEEECCCCC
Confidence 3457789999999999998889999989884
No 382
>PRK02399 hypothetical protein; Provisional
Probab=26.89 E-value=4.6e+02 Score=24.19 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=23.6
Q ss_pred CcEEEEEEcHHHHHHHHHHhhcCCCCCCceE
Q 024826 186 AHLYAVGWSLGANILIRYLGHESHSCPLSGA 216 (262)
Q Consensus 186 ~~i~lvG~SlGg~ia~~~a~~~~~~~~i~~~ 216 (262)
.-+..+|-|.|..+++.....-|-- +.++
T Consensus 97 ~gviglGGs~GT~lat~aMr~LPiG--~PKl 125 (406)
T PRK02399 97 AGVIGLGGSGGTALATPAMRALPIG--VPKL 125 (406)
T ss_pred cEEEEecCcchHHHHHHHHHhCCCC--CCeE
Confidence 3588999999999999999888865 5553
No 383
>PRK06179 short chain dehydrogenase; Provisional
Probab=26.81 E-value=2.6e+02 Score=23.24 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=36.7
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCC--cCcHHHHHHHHHHHHhhCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYS--ASFLGDMQEVVAHVGSKYP 184 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~--~~~~~Dl~~~l~~l~~~~~ 184 (262)
.+++-|.+|+- -..++..+.++|++|++.+...-.......-.... -...+++.++++.+.+.++
T Consensus 6 ~vlVtGasg~i----G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 72 (270)
T PRK06179 6 VALVTGASSGI----GRATAEKLARAGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEVIARAG 72 (270)
T ss_pred EEEEecCCCHH----HHHHHHHHHHCCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence 46666654432 35677888999999998886422111100001111 2234567788888776654
No 384
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=26.81 E-value=1.1e+02 Score=23.90 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=27.9
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSR 151 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~r 151 (262)
++++-|-.|.........++..+.+.|.+|+++|.-
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 456668888877777788888888889998877743
No 385
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=26.70 E-value=1.1e+02 Score=22.56 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=23.8
Q ss_pred EEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcC
Q 024826 117 ILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNS 150 (262)
Q Consensus 117 v~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~ 150 (262)
+++-|-+|...+.....+...+.++|.+|+++|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~ 35 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDA 35 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 4455665555555556667778888999999984
No 386
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=26.64 E-value=1.4e+02 Score=25.33 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=27.8
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDS 156 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s 156 (262)
|.+. |=+|...+.-..+++..++++|++|+++|.--.|..
T Consensus 5 Iav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~ 44 (270)
T PRK13185 5 LAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDS 44 (270)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcch
Confidence 3344 544444445567888899999999999998766544
No 387
>PRK06398 aldose dehydrogenase; Validated
Probab=26.45 E-value=2.9e+02 Score=22.89 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=36.3
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCC--CcCcHHHHHHHHHHHHhhCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFY--SASFLGDMQEVVAHVGSKYPK 185 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~--~~~~~~Dl~~~l~~l~~~~~~ 185 (262)
.+++-|..++- -..++..+.++|++|++.+...-... .-... .-...+++.++++.+.++++.
T Consensus 8 ~vlItGas~gI----G~~ia~~l~~~G~~Vi~~~r~~~~~~---~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 72 (258)
T PRK06398 8 VAIVTGGSQGI----GKAVVNRLKEEGSNVINFDIKEPSYN---DVDYFKVDVSNKEQVIKGIDYVISKYGR 72 (258)
T ss_pred EEEEECCCchH----HHHHHHHHHHCCCeEEEEeCCccccC---ceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46666654332 24677888999999998875422110 01111 122345777888888776553
No 388
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=26.43 E-value=1.2e+02 Score=26.97 Aligned_cols=39 Identities=15% Similarity=0.363 Sum_probs=31.6
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNS 150 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~ 150 (262)
+++.+|-+.|..|...+.++..++..+.+.|++|.+++.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~ 92 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAV 92 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 467899999999988888888888888888887765543
No 389
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=26.40 E-value=3e+02 Score=26.76 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=40.4
Q ss_pred CcEEEEECCCCCCCCc-HHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhC
Q 024826 113 SPVLILMPGLTGGSED-SYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKY 183 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~-~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~ 183 (262)
+.+++++||.....-. .--..+...|...|..|-.+-+++-|..-.. .....+-+.++++|+.+..
T Consensus 551 ~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~-----~~~~~~~~~~~~~~~~~~~ 617 (620)
T COG1506 551 KTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSR-----PENRVKVLKEILDWFKRHL 617 (620)
T ss_pred CCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCC-----chhHHHHHHHHHHHHHHHh
Confidence 5668999997643221 1123566777788988877777666544322 1334556677777777653
No 390
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=26.39 E-value=1.2e+02 Score=24.71 Aligned_cols=74 Identities=16% Similarity=0.292 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCCCC
Q 024826 132 RHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSC 211 (262)
Q Consensus 132 ~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~~~ 211 (262)
......+.+.+++++.+|-.|....+ .+..+++..+++.+ .+...+.++.-++|..... -+.++-+..
T Consensus 73 ~~~l~~~~~~~~D~vlIDT~Gr~~~d--------~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~-~~~~~~~~~ 140 (196)
T PF00448_consen 73 REALEKFRKKGYDLVLIDTAGRSPRD--------EELLEELKKLLEAL---NPDEVHLVLSATMGQEDLE-QALAFYEAF 140 (196)
T ss_dssp HHHHHHHHHTTSSEEEEEE-SSSSTH--------HHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHH-HHHHHHHHS
T ss_pred HHHHHHHhhcCCCEEEEecCCcchhh--------HHHHHHHHHHhhhc---CCccceEEEecccChHHHH-HHHHHhhcc
Confidence 34455667789999999998874221 22334444444444 3444455555555554433 333332222
Q ss_pred CCceEE
Q 024826 212 PLSGAV 217 (262)
Q Consensus 212 ~i~~~v 217 (262)
.+.++|
T Consensus 141 ~~~~lI 146 (196)
T PF00448_consen 141 GIDGLI 146 (196)
T ss_dssp STCEEE
T ss_pred cCceEE
Confidence 366655
No 391
>PRK09065 glutamine amidotransferase; Provisional
Probab=26.29 E-value=3.9e+02 Score=22.35 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=26.2
Q ss_pred CcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhh
Q 024826 167 SFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGH 206 (262)
Q Consensus 167 ~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~ 206 (262)
.|..++.++++.+... .+-++|.++|..++..+++-
T Consensus 72 ~w~~~~~~~i~~~~~~----~~PvlGIC~G~Qlla~alGg 107 (237)
T PRK09065 72 DWSERTADWLRQAAAA----GMPLLGICYGHQLLAHALGG 107 (237)
T ss_pred hhHHHHHHHHHHHHHC----CCCEEEEChhHHHHHHHcCC
Confidence 4555666666666543 46699999999999988763
No 392
>PTZ00062 glutaredoxin; Provisional
Probab=26.23 E-value=3.7e+02 Score=22.11 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=54.6
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAV 191 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lv 191 (262)
..|+||+.-|......+.|.+.....|.+.|.....+|.. .+ .++++.+.......--..|++=
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~--------------~d--~~~~~~l~~~sg~~TvPqVfI~ 175 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIF--------------ED--PDLREELKVYSNWPTYPQLYVN 175 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcC--------------CC--HHHHHHHHHHhCCCCCCeEEEC
Confidence 5789999999877777888788778888878766666642 01 2444444443322111258888
Q ss_pred EEcHHHHHHHHHHhhcCC
Q 024826 192 GWSLGANILIRYLGHESH 209 (262)
Q Consensus 192 G~SlGg~ia~~~a~~~~~ 209 (262)
|--.||.--+.-+.+.++
T Consensus 176 G~~IGG~d~l~~l~~~G~ 193 (204)
T PTZ00062 176 GELIGGHDIIKELYESNS 193 (204)
T ss_pred CEEEcChHHHHHHHHcCC
Confidence 888999888777766665
No 393
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=26.19 E-value=1.3e+02 Score=24.92 Aligned_cols=37 Identities=14% Similarity=0.212 Sum_probs=24.0
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRG 152 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG 152 (262)
|.+.-+-+|...+.....++..+++.|++|+++|.--
T Consensus 4 i~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~ 40 (261)
T TIGR01968 4 IVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADI 40 (261)
T ss_pred EEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 3333333343344445677778888999999999754
No 394
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=26.16 E-value=1.1e+02 Score=28.10 Aligned_cols=46 Identities=11% Similarity=0.301 Sum_probs=33.2
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPV 158 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~ 158 (262)
..+.++++=|--++..+.....++..+.++|++|..+|. .-|+++.
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDa-DvGQ~ei 116 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDA-DVGQSEI 116 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeC-CCCCccc
Confidence 456677777776666667777788888999999999997 2344443
No 395
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=26.16 E-value=1.6e+02 Score=21.24 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=36.0
Q ss_pred EEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhh
Q 024826 117 ILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSK 182 (262)
Q Consensus 117 v~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~ 182 (262)
|++||-.|......++.++.. .|+.++-+|..-.... +.....+.+..+++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~---l~~~~~~i~~~~~~~~-------~~~~~~~~i~~~~~~~~~~ 56 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY---LGFPFIEIDGSELISS-------YAGDSEQKIRDFFKKAKKS 56 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH---TTSEEEEEETTHHHTS-------STTHHHHHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhh---cccccccccccccccc-------ccccccccccccccccccc
Confidence 688998887776555544433 3788888886544311 2244456777777777655
No 396
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=26.13 E-value=2.1e+02 Score=25.26 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=26.4
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCG 154 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G 154 (262)
+-++-|++|... .| ++..|.++||.|..+..|..-
T Consensus 4 ~ALITGITGQDG-sY---La~lLLekGY~VhGi~Rrss~ 38 (345)
T COG1089 4 VALITGITGQDG-SY---LAELLLEKGYEVHGIKRRSSS 38 (345)
T ss_pred eEEEecccCCch-HH---HHHHHHhcCcEEEEEeecccc
Confidence 567889987543 44 566789999999999888543
No 397
>PRK07053 glutamine amidotransferase; Provisional
Probab=26.08 E-value=3.9e+02 Score=22.33 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=45.2
Q ss_pred cEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCC-C------C-----CCCcCCCC---cCcHHHHHHHHHH
Q 024826 114 PVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGD-S------P-----VTTPQFYS---ASFLGDMQEVVAH 178 (262)
Q Consensus 114 p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~-s------~-----~~~~~~~~---~~~~~Dl~~~l~~ 178 (262)
+++|+-|--..+. ..+...+.+.|+.+-+++...-.. . + +.....+. ..|..+..++++.
T Consensus 4 ~ilviqh~~~e~~-----g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~ 78 (234)
T PRK07053 4 TAVAIRHVAFEDL-----GSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQ 78 (234)
T ss_pred eEEEEECCCCCCC-----hHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHH
Confidence 4566667543322 235566778888776664321100 0 0 00001111 2345555555555
Q ss_pred HHhhCCCCcEEEEEEcHHHHHHHHHHh
Q 024826 179 VGSKYPKAHLYAVGWSLGANILIRYLG 205 (262)
Q Consensus 179 l~~~~~~~~i~lvG~SlGg~ia~~~a~ 205 (262)
+... .+-++|.++|..++...++
T Consensus 79 ~~~~----~~PvlGIC~G~Qlla~alG 101 (234)
T PRK07053 79 RLAA----GLPTLGICLGAQLIARALG 101 (234)
T ss_pred HHHC----CCCEEEECccHHHHHHHcC
Confidence 4433 4568999999999998885
No 398
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=26.07 E-value=1.4e+02 Score=20.77 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=19.4
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCce-EEEEc
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWR-VVVFN 149 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~-vv~~d 149 (262)
++++||+|.+. . . + ...+..+.+.||. |+.++
T Consensus 61 ~~~ivvyC~~G--~-r-s--~~a~~~L~~~G~~~v~~l~ 93 (101)
T cd01518 61 GKKVLMYCTGG--I-R-C--EKASAYLKERGFKNVYQLK 93 (101)
T ss_pred CCEEEEECCCc--h-h-H--HHHHHHHHHhCCcceeeec
Confidence 67888888752 1 1 1 1234567788995 65544
No 399
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=25.98 E-value=2.7e+02 Score=24.08 Aligned_cols=90 Identities=10% Similarity=-0.006 Sum_probs=43.5
Q ss_pred CCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHH
Q 024826 124 GGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRY 203 (262)
Q Consensus 124 g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~ 203 (262)
|.-+..-++.+++++.+.|.+-+++. +|.+.....+..+..+=+..+++.+.. +--+++|.+..-.-+.+.
T Consensus 21 g~iD~~~l~~li~~l~~~Gv~gi~v~-----GstGE~~~Lt~eEr~~v~~~~~~~~~g----~~pvi~gv~~~t~~ai~~ 91 (296)
T TIGR03249 21 GSFDEAAYRENIEWLLGYGLEALFAA-----GGTGEFFSLTPAEYEQVVEIAVSTAKG----KVPVYTGVGGNTSDAIEI 91 (296)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEEC-----CCCcCcccCCHHHHHHHHHHHHHHhCC----CCcEEEecCccHHHHHHH
Confidence 33444456788889999999988875 343332333323333333334444332 223455554222233333
Q ss_pred HhhcCCCCCCceEEEEcCCc
Q 024826 204 LGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 204 a~~~~~~~~i~~~v~l~~p~ 223 (262)
+.. -.+..+++++++.|.+
T Consensus 92 a~~-a~~~Gadav~~~pP~y 110 (296)
T TIGR03249 92 ARL-AEKAGADGYLLLPPYL 110 (296)
T ss_pred HHH-HHHhCCCEEEECCCCC
Confidence 322 2222367765555433
No 400
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=25.85 E-value=2.3e+02 Score=19.54 Aligned_cols=81 Identities=14% Similarity=0.235 Sum_probs=50.8
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAV 191 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lv 191 (262)
..|+||+..|..+.....|-......|.+.|...-.+|... + .++++.+.......--..|++=
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~--------------~--~~~~~~l~~~~g~~tvP~vfi~ 70 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE--------------D--EEVRQGLKEYSNWPTFPQLYVN 70 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC--------------C--HHHHHHHHHHhCCCCCCEEEEC
Confidence 57999999998887888887777778888887766666421 0 2333333333221111146677
Q ss_pred EEcHHHHHHHHHHhhcC
Q 024826 192 GWSLGANILIRYLGHES 208 (262)
Q Consensus 192 G~SlGg~ia~~~a~~~~ 208 (262)
|.-.||.--+.-+.+.+
T Consensus 71 g~~iGG~~~l~~l~~~g 87 (90)
T cd03028 71 GELVGGCDIVKEMHESG 87 (90)
T ss_pred CEEEeCHHHHHHHHHcC
Confidence 77788877666555443
No 401
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=25.83 E-value=1.3e+02 Score=25.00 Aligned_cols=32 Identities=16% Similarity=-0.090 Sum_probs=22.0
Q ss_pred HHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhc
Q 024826 175 VVAHVGSKYPKAHLYAVGWSLGANILIRYLGHE 207 (262)
Q Consensus 175 ~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~ 207 (262)
+++.+.+. +-..-.++|.|.|+.+++.++...
T Consensus 18 vL~aL~e~-gi~~~~i~GtSaGAi~aa~~a~g~ 49 (221)
T cd07210 18 FLAALLEM-GLEPSAISGTSAGALVGGLFASGI 49 (221)
T ss_pred HHHHHHHc-CCCceEEEEeCHHHHHHHHHHcCC
Confidence 34444433 223457999999999999998644
No 402
>PF15660 Imm49: Immunity protein 49
Probab=25.82 E-value=85 Score=20.65 Aligned_cols=16 Identities=13% Similarity=0.293 Sum_probs=13.9
Q ss_pred cCcHHHHHHHHHHHHh
Q 024826 166 ASFLGDMQEVVAHVGS 181 (262)
Q Consensus 166 ~~~~~Dl~~~l~~l~~ 181 (262)
.+|++|+.++++.++.
T Consensus 67 rdwtddladwvdrlrr 82 (84)
T PF15660_consen 67 RDWTDDLADWVDRLRR 82 (84)
T ss_pred hhhhhHHHHHHHHHhh
Confidence 7899999999998875
No 403
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=25.63 E-value=2.7e+02 Score=24.23 Aligned_cols=88 Identities=11% Similarity=0.103 Sum_probs=43.5
Q ss_pred CCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHH
Q 024826 125 GSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYL 204 (262)
Q Consensus 125 ~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a 204 (262)
.-+..-+..+++++.+.|.+-++++ +|.+....++..+..+=+..+++.+..+ .+ +++|.+.+-.-+..++
T Consensus 24 ~iD~~~l~~li~~l~~~Gv~Gi~~~-----GstGE~~~Lt~eEr~~~~~~~~~~~~~~---~p-vi~gv~~~t~~~i~~~ 94 (303)
T PRK03620 24 SFDEAAYREHLEWLAPYGAAALFAA-----GGTGEFFSLTPDEYSQVVRAAVETTAGR---VP-VIAGAGGGTAQAIEYA 94 (303)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEC-----cCCcCcccCCHHHHHHHHHHHHHHhCCC---Cc-EEEecCCCHHHHHHHH
Confidence 3344445778888999999888875 3433323332233333333344443322 23 3445553333444444
Q ss_pred hhcCCCCCCceEEEEcCCc
Q 024826 205 GHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 205 ~~~~~~~~i~~~v~l~~p~ 223 (262)
... ++..++++++ .+|+
T Consensus 95 ~~a-~~~Gadav~~-~pP~ 111 (303)
T PRK03620 95 QAA-ERAGADGILL-LPPY 111 (303)
T ss_pred HHH-HHhCCCEEEE-CCCC
Confidence 433 2223667555 4554
No 404
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=25.40 E-value=1.1e+02 Score=30.49 Aligned_cols=38 Identities=24% Similarity=0.414 Sum_probs=33.3
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGC 153 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~ 153 (262)
=++++|.+|+..+..+..++....++|-+++++|.-|-
T Consensus 187 H~li~GttGSGKS~~i~~LL~~ir~RGdrAIIyD~~Ge 224 (732)
T PRK13700 187 NFCLHGTVGAGKSEVIRRLANYARQRGDMVVIYDRSGE 224 (732)
T ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 47889999988888888999999999999999998764
No 405
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=25.36 E-value=1.2e+02 Score=26.45 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=26.3
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCG 154 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G 154 (262)
|.+. |=+|-..+.-...++..++++|++|+++|.--.+
T Consensus 3 Iav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~ 40 (296)
T TIGR02016 3 IAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKH 40 (296)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCC
Confidence 3344 6555444455567788899999999999975443
No 406
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=25.30 E-value=1.1e+02 Score=29.60 Aligned_cols=38 Identities=26% Similarity=0.490 Sum_probs=31.1
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGC 153 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~ 153 (262)
=++++|-+|+.....+..+.....++|.+++++|.-|-
T Consensus 178 h~li~G~tGsGKs~~i~~ll~~~~~~g~~~ii~D~~g~ 215 (566)
T TIGR02759 178 HILIHGTTGSGKSVAIRKLLRWIRQRGDRAIIYDKGCT 215 (566)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 47788888887777778888888889999999998653
No 407
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=25.29 E-value=2.4e+02 Score=22.37 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=26.1
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGC 153 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~ 153 (262)
||.+-|..|+..+.....+...+...|..+.++..-++
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 46677887877766666677777667777777654444
No 408
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=25.18 E-value=2.8e+02 Score=22.62 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=34.6
Q ss_pred EEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCC--CcCcHHHHHHHHHHHHhhCC
Q 024826 117 ILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFY--SASFLGDMQEVVAHVGSKYP 184 (262)
Q Consensus 117 v~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~--~~~~~~Dl~~~l~~l~~~~~ 184 (262)
+++.|..++- -..++..+.++|++|++.+......... ..... .....+++.++++.+...++
T Consensus 11 vlItGas~~i----G~~la~~l~~~G~~v~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 75 (252)
T PRK08220 11 VWVTGAAQGI----GYAVALAFVEAGAKVIGFDQAFLTQEDY-PFATFVLDVSDAAAVAQVCQRLLAETG 75 (252)
T ss_pred EEEeCCCchH----HHHHHHHHHHCCCEEEEEecchhhhcCC-ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5555654432 2466778889999999998654110000 00011 12224567777777776654
No 409
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=25.16 E-value=2.7e+02 Score=20.14 Aligned_cols=64 Identities=14% Similarity=0.262 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCceEEE-EcCCCC-CCCCCCC--cCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEc
Q 024826 131 VRHMLLRARSKGWRVVV-FNSRGC-GDSPVTT--PQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWS 194 (262)
Q Consensus 131 ~~~~~~~l~~~G~~vv~-~d~rG~-G~s~~~~--~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~S 194 (262)
+...+.++.++||.+.+ +.-.++ -.+.... .-.+......++.+-++..++.||+.-|=++|+.
T Consensus 17 i~~QI~yll~qG~~~~lE~ad~~~~~~~yW~mwklP~f~~~d~~~Vl~ei~~C~~~~p~~YVRliG~D 84 (99)
T cd03527 17 IAKQIDYIISNGWAPCLEFTEPEHYDNRYWTMWKLPMFGCTDPAQVLREIEACRKAYPDHYVRVVGFD 84 (99)
T ss_pred HHHHHHHHHhCCCEEEEEcccCCCCCCCEEeeccCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEe
Confidence 56778899999998753 221111 1111111 1112234466778888888889999989899975
No 410
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=24.96 E-value=1.2e+02 Score=25.96 Aligned_cols=25 Identities=24% Similarity=0.135 Sum_probs=19.2
Q ss_pred hCCCCcEEEEEEcHHHHHHHHHHhh
Q 024826 182 KYPKAHLYAVGWSLGANILIRYLGH 206 (262)
Q Consensus 182 ~~~~~~i~lvG~SlGg~ia~~~a~~ 206 (262)
..+-.+-.++|||+|-..++..++.
T Consensus 78 ~~Gi~p~~~~GhSlGE~aA~~~ag~ 102 (298)
T smart00827 78 SWGVRPDAVVGHSLGEIAAAYVAGV 102 (298)
T ss_pred HcCCcccEEEecCHHHHHHHHHhCC
Confidence 3455588999999999888776653
No 411
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=24.93 E-value=1.3e+02 Score=25.43 Aligned_cols=19 Identities=26% Similarity=0.053 Sum_probs=16.9
Q ss_pred EEEEcHHHHHHHHHHhhcC
Q 024826 190 AVGWSLGANILIRYLGHES 208 (262)
Q Consensus 190 lvG~SlGg~ia~~~a~~~~ 208 (262)
+.|.|.|+.++..|+...+
T Consensus 34 i~GtSAGAl~aa~~a~g~~ 52 (245)
T cd07218 34 ISGASAGALAACCLLCDLP 52 (245)
T ss_pred EEEEcHHHHHHHHHHhCCc
Confidence 9999999999999987654
No 412
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=24.92 E-value=1.5e+02 Score=24.95 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=25.4
Q ss_pred CCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCC
Q 024826 121 GLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGD 155 (262)
Q Consensus 121 G~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~ 155 (262)
|=+|-....-..+++..++++|++|+++|.--.|.
T Consensus 7 gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~ 41 (268)
T TIGR01281 7 GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHD 41 (268)
T ss_pred cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCcccc
Confidence 65444444445677888999999999999865553
No 413
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=24.85 E-value=2.5e+02 Score=19.75 Aligned_cols=82 Identities=13% Similarity=0.170 Sum_probs=51.6
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAV 191 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lv 191 (262)
..++||+..|...-+.+.|.......|.+.|.....+|.- . + .++.+.+..+.....-..|++=
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~-----~---------~--~~~~~~l~~~tg~~tvP~vfi~ 74 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVL-----E---------D--PEIRQGIKEYSNWPTIPQLYVK 74 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECC-----C---------C--HHHHHHHHHHhCCCCCCEEEEC
Confidence 5788999998766666777777777788888776666652 0 0 2233333333221111157777
Q ss_pred EEcHHHHHHHHHHhhcCC
Q 024826 192 GWSLGANILIRYLGHESH 209 (262)
Q Consensus 192 G~SlGg~ia~~~a~~~~~ 209 (262)
|...||.--+.-+.+.++
T Consensus 75 g~~iGG~ddl~~l~~~g~ 92 (97)
T TIGR00365 75 GEFVGGCDIIMEMYQSGE 92 (97)
T ss_pred CEEEeChHHHHHHHHCcC
Confidence 788999887776666554
No 414
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=24.76 E-value=1.2e+02 Score=26.64 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=16.5
Q ss_pred EEEEEcHHHHHHHHHHhhc
Q 024826 189 YAVGWSLGANILIRYLGHE 207 (262)
Q Consensus 189 ~lvG~SlGg~ia~~~a~~~ 207 (262)
.+.|.|+||.+++.++...
T Consensus 35 ~i~GTStGgiIA~~la~g~ 53 (312)
T cd07212 35 WIAGTSTGGILALALLHGK 53 (312)
T ss_pred EEEeeChHHHHHHHHHcCC
Confidence 5999999999999998643
No 415
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=24.55 E-value=1.3e+02 Score=25.19 Aligned_cols=34 Identities=15% Similarity=-0.106 Sum_probs=22.9
Q ss_pred HHHHHHhhC-CCCcEEEEEEcHHHHHHHHHHhhcC
Q 024826 175 VVAHVGSKY-PKAHLYAVGWSLGANILIRYLGHES 208 (262)
Q Consensus 175 ~l~~l~~~~-~~~~i~lvG~SlGg~ia~~~a~~~~ 208 (262)
+++.+.++. ....-.++|.|.|+.++..|+....
T Consensus 17 Vl~~L~e~gi~~~~~~i~G~SAGAl~aa~~asg~~ 51 (233)
T cd07224 17 VLSLLIEAGVINETTPLAGASAGSLAAACSASGLS 51 (233)
T ss_pred HHHHHHHcCCCCCCCEEEEEcHHHHHHHHHHcCCC
Confidence 445554431 1113479999999999999998654
No 416
>PRK10867 signal recognition particle protein; Provisional
Probab=24.33 E-value=5.8e+02 Score=23.71 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=16.5
Q ss_pred HHHHHHhCCceEEEEcCCCCCC
Q 024826 134 MLLRARSKGWRVVVFNSRGCGD 155 (262)
Q Consensus 134 ~~~~l~~~G~~vv~~d~rG~G~ 155 (262)
........+|+++++|-.|...
T Consensus 175 a~~~a~~~~~DvVIIDTaGrl~ 196 (433)
T PRK10867 175 ALEEAKENGYDVVIVDTAGRLH 196 (433)
T ss_pred HHHHHHhcCCCEEEEeCCCCcc
Confidence 3344556789999999998753
No 417
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.29 E-value=3.6e+02 Score=22.00 Aligned_cols=65 Identities=9% Similarity=0.113 Sum_probs=37.0
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCC---------CCCCcCCC--CcCcHHHHHHHHHHHHhhCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDS---------PVTTPQFY--SASFLGDMQEVVAHVGSKYP 184 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s---------~~~~~~~~--~~~~~~Dl~~~l~~l~~~~~ 184 (262)
++++-|..|.- -..++..+.++|++|++++.+..... ........ .-...+++..+++.+.+.++
T Consensus 4 ~vlItG~sg~i----G~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12745 4 VALVTGGRRGI----GLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWG 79 (256)
T ss_pred EEEEeCCCchH----HHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 45666654432 35677888899999999986632110 00000111 12235677788888877655
No 418
>PF10561 UPF0565: Uncharacterised protein family UPF0565; InterPro: IPR018881 This family of proteins has no known function.
Probab=24.19 E-value=58 Score=28.67 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.7
Q ss_pred CCcEEEEEEcHHHHHHHHHHhhcC
Q 024826 185 KAHLYAVGWSLGANILIRYLGHES 208 (262)
Q Consensus 185 ~~~i~lvG~SlGg~ia~~~a~~~~ 208 (262)
..++.++|||-|+.++-.++.|..
T Consensus 192 ~~~~~LiGFSKGcvVLNqll~El~ 215 (303)
T PF10561_consen 192 KPPLTLIGFSKGCVVLNQLLYELH 215 (303)
T ss_pred CCceEEEEecCcchHHHHHHHHHH
Confidence 348999999999999998887765
No 419
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=24.14 E-value=3.4e+02 Score=20.96 Aligned_cols=72 Identities=8% Similarity=0.120 Sum_probs=42.1
Q ss_pred EEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEE
Q 024826 115 VLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVG 192 (262)
Q Consensus 115 ~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG 192 (262)
.-|+-.|.+|.....++..+...+.....+++++.. |. .+... ......+.+.+.++++.+++. ..++++++
T Consensus 32 ~~v~n~g~~G~~~~~~l~~l~~~~~~~~~d~v~i~~-G~--ND~~~-~~~~~~~~~~~~~li~~~~~~--~~~~il~~ 103 (183)
T cd04501 32 KEVINRGINGDTTSQMLVRFYEDVIALKPAVVIIMG-GT--NDIIV-NTSLEMIKDNIRSMVELAEAN--GIKVILAS 103 (183)
T ss_pred CeEEecCcCCccHHHHHHHHHHHHHhcCCCEEEEEe-cc--Ccccc-CCCHHHHHHHHHHHHHHHHHC--CCcEEEEe
Confidence 346778888877666666655555556777777765 22 22111 112245667778888888653 23555554
No 420
>PRK13236 nitrogenase reductase; Reviewed
Probab=24.12 E-value=1.5e+02 Score=25.77 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=30.0
Q ss_pred EEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCC
Q 024826 115 VLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDS 156 (262)
Q Consensus 115 ~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s 156 (262)
.+|-+.|=+|-........++..+++.|++|+++|.--++.+
T Consensus 7 ~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~ 48 (296)
T PRK13236 7 RQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADS 48 (296)
T ss_pred eEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCc
Confidence 355557755555555556778889999999999998655544
No 421
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=23.95 E-value=1.3e+02 Score=26.01 Aligned_cols=32 Identities=13% Similarity=-0.003 Sum_probs=22.4
Q ss_pred HHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhc
Q 024826 175 VVAHVGSKYPKAHLYAVGWSLGANILIRYLGHE 207 (262)
Q Consensus 175 ~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~ 207 (262)
+++.+.+. +-..=.+.|.|+|+.++..|+...
T Consensus 28 VL~aLeE~-gi~~d~v~GtSaGAiiga~ya~g~ 59 (269)
T cd07227 28 ILQALEEA-GIPIDAIGGTSIGSFVGGLYAREA 59 (269)
T ss_pred HHHHHHHc-CCCccEEEEECHHHHHHHHHHcCC
Confidence 44444433 222457999999999999999764
No 422
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=23.86 E-value=2.9e+02 Score=20.53 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=20.5
Q ss_pred CcHHHHHHHHHHHhCCceEEEEcCCCCC
Q 024826 127 EDSYVRHMLLRARSKGWRVVVFNSRGCG 154 (262)
Q Consensus 127 ~~~y~~~~~~~l~~~G~~vv~~d~rG~G 154 (262)
.+.++..++..+.++|++|.++-...-+
T Consensus 14 ~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 14 AERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 4577889999999999999888554433
No 423
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=23.71 E-value=1.7e+02 Score=25.96 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=24.8
Q ss_pred CCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCC
Q 024826 124 GGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSP 157 (262)
Q Consensus 124 g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~ 157 (262)
|......+..++..+.++|++|.++ .||+|+..
T Consensus 61 GtGKTP~v~~L~~~l~~~g~~~~il-sRGYg~~~ 93 (325)
T PRK00652 61 GTGKTPVVIALAEQLQARGLKPGVV-SRGYGGKL 93 (325)
T ss_pred CCChHHHHHHHHHHHHHCCCeEEEE-CCCCCCCc
Confidence 4445577788888999999987655 68888654
No 424
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=23.56 E-value=1.3e+02 Score=25.54 Aligned_cols=35 Identities=20% Similarity=0.116 Sum_probs=23.2
Q ss_pred HHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCC
Q 024826 175 VVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESH 209 (262)
Q Consensus 175 ~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~ 209 (262)
+++.+.+..-...=.++|.|.|+.+++.|+.....
T Consensus 16 vl~al~e~~~~~fd~i~GtSaGAi~a~~~~~g~~~ 50 (266)
T cd07208 16 VLDAFLEAGIRPFDLVIGVSAGALNAASYLSGQRG 50 (266)
T ss_pred HHHHHHHcCCCCCCEEEEECHHHHhHHHHHhCCcc
Confidence 44444443211133799999999999999876554
No 425
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=23.54 E-value=2.8e+02 Score=23.97 Aligned_cols=89 Identities=3% Similarity=-0.114 Sum_probs=43.4
Q ss_pred CCCcHHHHHHHHHHHhCC-ceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEc-HHHHHHHH
Q 024826 125 GSEDSYVRHMLLRARSKG-WRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWS-LGANILIR 202 (262)
Q Consensus 125 ~~~~~y~~~~~~~l~~~G-~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~S-lGg~ia~~ 202 (262)
.-+..-++.+++++.+.| .+.+++. +|.+.....+..+..+=+..+++.... +--+++|.+ .+-.-+..
T Consensus 17 ~iD~~~~~~~i~~~i~~G~v~gi~~~-----GstGE~~~Lt~eEr~~~~~~~~~~~~~----~~pvi~gv~~~~t~~~i~ 87 (290)
T TIGR00683 17 TINEKGLRQIIRHNIDKMKVDGLYVG-----GSTGENFMLSTEEKKEIFRIAKDEAKD----QIALIAQVGSVNLKEAVE 87 (290)
T ss_pred CcCHHHHHHHHHHHHhCCCcCEEEEC-----CcccccccCCHHHHHHHHHHHHHHhCC----CCcEEEecCCCCHHHHHH
Confidence 334444577788888899 7777665 343333333333333333344444332 222345544 33334444
Q ss_pred HHhhcCCCCCCceEEEEcCCc
Q 024826 203 YLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 203 ~a~~~~~~~~i~~~v~l~~p~ 223 (262)
++.. -++..+++++++.|.+
T Consensus 88 la~~-a~~~Gad~v~v~~P~y 107 (290)
T TIGR00683 88 LGKY-ATELGYDCLSAVTPFY 107 (290)
T ss_pred HHHH-HHHhCCCEEEEeCCcC
Confidence 4433 2222367766655533
No 426
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=23.41 E-value=1.9e+02 Score=26.37 Aligned_cols=44 Identities=25% Similarity=0.334 Sum_probs=28.1
Q ss_pred CcEEEEECCCCCCC-CcHHHHHHHHHHHhCCceEEEEcC-CCCCCC
Q 024826 113 SPVLILMPGLTGGS-EDSYVRHMLLRARSKGWRVVVFNS-RGCGDS 156 (262)
Q Consensus 113 ~p~vv~lHG~~g~~-~~~y~~~~~~~l~~~G~~vv~~d~-rG~G~s 156 (262)
++.||.+...-|+. ...-..+++..++.+|++|+++|. -..|..
T Consensus 105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nl 150 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTA 150 (388)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCch
Confidence 34455454333333 333356778888999999999995 666543
No 427
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=23.35 E-value=1.7e+02 Score=26.51 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=25.9
Q ss_pred EEEEECC-CCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCC
Q 024826 115 VLILMPG-LTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCG 154 (262)
Q Consensus 115 ~vv~lHG-~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G 154 (262)
.||.+.. =+|........+++..++..|++|+++|.-..+
T Consensus 105 ~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~ 145 (387)
T TIGR03453 105 QVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQA 145 (387)
T ss_pred eEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 4444443 333333344457777888899999999986554
No 428
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=23.25 E-value=4.9e+02 Score=24.18 Aligned_cols=21 Identities=5% Similarity=0.311 Sum_probs=15.9
Q ss_pred HHHHHHhCCceEEEEcCCCCC
Q 024826 134 MLLRARSKGWRVVVFNSRGCG 154 (262)
Q Consensus 134 ~~~~l~~~G~~vv~~d~rG~G 154 (262)
-+..+.+.+|+++.+|-.|.-
T Consensus 174 ~l~~~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 174 GVEKFKKENFDIIIVDTSGRH 194 (429)
T ss_pred HHHHHHhCCCCEEEEECCCCC
Confidence 344555679999999998863
No 429
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=23.19 E-value=5.6e+02 Score=23.14 Aligned_cols=107 Identities=13% Similarity=0.091 Sum_probs=62.3
Q ss_pred CCcEEE-EECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEE
Q 024826 112 DSPVLI-LMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYA 190 (262)
Q Consensus 112 ~~p~vv-~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~l 190 (262)
++|++. +++--.|-+.+. ...++..+...|.+.+..|- +....+.....+...-+.++++...++.+..++++
T Consensus 129 ~rPli~Ti~kp~~gld~~~-la~~~~~l~~gGvD~Ikdde-----~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~ 202 (367)
T cd08205 129 DRPLLGTIIKPSIGLSPEE-LAELAYELALGGIDLIKDDE-----LLADQPYAPFEERVRACMEAVRRANEETGRKTLYA 202 (367)
T ss_pred CCCeeeeeeCCCCCCCHHH-HHHHHHHHHhcCCCeeeccc-----cccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEE
Confidence 566655 355443433433 46778888889988877662 22222233335556667788888887667778888
Q ss_pred EEEcHHHHHHHHHHhhcCCCCCCceEEEEcCCcChH
Q 024826 191 VGWSLGANILIRYLGHESHSCPLSGAVSLCNPFNLV 226 (262)
Q Consensus 191 vG~SlGg~ia~~~a~~~~~~~~i~~~v~l~~p~~~~ 226 (262)
.+.+-...-+.+.+...-+. -.++ +.+++++...
T Consensus 203 ~nit~~~~e~i~~a~~a~~~-Gad~-vmv~~~~~g~ 236 (367)
T cd08205 203 PNITGDPDELRRRADRAVEA-GANA-LLINPNLVGL 236 (367)
T ss_pred EEcCCCHHHHHHHHHHHHHc-CCCE-EEEecccccc
Confidence 88876555554444322111 1344 6666665543
No 430
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=23.16 E-value=4.3e+02 Score=21.73 Aligned_cols=90 Identities=13% Similarity=0.155 Sum_probs=44.3
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCce-EEEEcCCCCC--CCCC-----CC-cC-CCCcCcHHHHHH------HH
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWR-VVVFNSRGCG--DSPV-----TT-PQ-FYSASFLGDMQE------VV 176 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~-vv~~d~rG~G--~s~~-----~~-~~-~~~~~~~~Dl~~------~l 176 (262)
.+.|++++-..+. .+.+...+...+.+.|+. +..++..... .++. .. .. ....+.+.-+.+ +.
T Consensus 29 ~~~i~~iptA~~~-~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~ 107 (217)
T cd03145 29 GARIVVIPAASEE-PAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLL 107 (217)
T ss_pred CCcEEEEeCCCcC-hhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHH
Confidence 4556776654333 345556677777778874 4555543211 1110 00 00 011222222222 11
Q ss_pred HHHHhhCCCCcEEEEEEcHHHHHHHHHH
Q 024826 177 AHVGSKYPKAHLYAVGWSLGANILIRYL 204 (262)
Q Consensus 177 ~~l~~~~~~~~i~lvG~SlGg~ia~~~a 204 (262)
+.++..+. +-..++|.|.|+++...+.
T Consensus 108 ~~l~~~~~-~G~v~~G~SAGA~i~~~~~ 134 (217)
T cd03145 108 DALRKVYR-GGVVIGGTSAGAAVMSDTM 134 (217)
T ss_pred HHHHHHHH-cCCEEEEccHHHHhhhhcc
Confidence 22332222 2577999999999988763
No 431
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=23.08 E-value=93 Score=24.65 Aligned_cols=67 Identities=19% Similarity=0.426 Sum_probs=37.0
Q ss_pred EEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCC----------CCcCCCC----cCcHHHHHHHHHHHH
Q 024826 115 VLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPV----------TTPQFYS----ASFLGDMQEVVAHVG 180 (262)
Q Consensus 115 ~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~----------~~~~~~~----~~~~~Dl~~~l~~l~ 180 (262)
+|+++.|+.|+.....+++++. ....|.++.++-. -+|.... ....... -....|+...++.+.
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~n-e~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~ 78 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVN-EFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLL 78 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEEC-STTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHC
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEc-cccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHH
Confidence 3788999999888888888776 4456666654422 2222110 0000111 123457888888887
Q ss_pred hhC
Q 024826 181 SKY 183 (262)
Q Consensus 181 ~~~ 183 (262)
..+
T Consensus 79 ~~~ 81 (178)
T PF02492_consen 79 REY 81 (178)
T ss_dssp CCC
T ss_pred Hhc
Confidence 776
No 432
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=22.96 E-value=2.4e+02 Score=25.71 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=28.5
Q ss_pred CcEEEEECCCCCCCC-cHHHHHHHHHHHhCCceEEEEcC-CCCCCC
Q 024826 113 SPVLILMPGLTGGSE-DSYVRHMLLRARSKGWRVVVFNS-RGCGDS 156 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~-~~y~~~~~~~l~~~G~~vv~~d~-rG~G~s 156 (262)
++.||.+-..-|+.. ..-..+++..++.+|++|+++|. -..|..
T Consensus 105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nl 150 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTA 150 (387)
T ss_pred CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCc
Confidence 345555543333333 33456778888999999999995 666543
No 433
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=22.89 E-value=1.5e+02 Score=23.18 Aligned_cols=37 Identities=22% Similarity=0.544 Sum_probs=30.1
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRG 152 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG 152 (262)
+|++=|..|+..+...+.+...+.+.|+.|+....+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~ 38 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPG 38 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 5677798888887777888888888899998887665
No 434
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=22.87 E-value=2e+02 Score=25.69 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=28.0
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSP 157 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~ 157 (262)
||++|...- ..++.++..|.++|+.|.++-..+.+..+
T Consensus 2 il~~~~~~p----~~~~~la~~L~~~G~~v~~~~~~~~~~~~ 39 (396)
T cd03818 2 ILFVHQNFP----GQFRHLAPALAAQGHEVVFLTEPNAAPPP 39 (396)
T ss_pred EEEECCCCc----hhHHHHHHHHHHCCCEEEEEecCCCCCCC
Confidence 678886432 22578999999999999998777665443
No 435
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=22.80 E-value=3.1e+02 Score=23.96 Aligned_cols=90 Identities=11% Similarity=-0.063 Sum_probs=47.7
Q ss_pred CCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEc-HHHHHHHH
Q 024826 124 GGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWS-LGANILIR 202 (262)
Q Consensus 124 g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~S-lGg~ia~~ 202 (262)
|.-+..-+..+++++.+.|.+-++++ +|.+....++..+..+=+..+++... .+--+++|.+ .+-.-+.+
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~-----GstGE~~~Lt~eEr~~v~~~~~~~~~----grvpvi~Gv~~~~t~~ai~ 94 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTM-----GTFGECATLTWEEKQAFVATVVETVA----GRVPVFVGATTLNTRDTIA 94 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEC-----cccccchhCCHHHHHHHHHHHHHHhC----CCCCEEEEeccCCHHHHHH
Confidence 33444445778888989999888875 34433333333333333444444443 2233456665 45455555
Q ss_pred HHhhcCCCCCCceEEEEcCCc
Q 024826 203 YLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 203 ~a~~~~~~~~i~~~v~l~~p~ 223 (262)
.+....+ ...++++++.|.+
T Consensus 95 ~a~~A~~-~Gad~vlv~~P~y 114 (309)
T cd00952 95 RTRALLD-LGADGTMLGRPMW 114 (309)
T ss_pred HHHHHHH-hCCCEEEECCCcC
Confidence 5544322 2366755555533
No 436
>PF08250 Sperm_act_pep: Sperm-activating peptides; InterPro: IPR013254 The sperm-activating peptides (SAPs) are isolated in egg-conditioned media (egg jelly) of sea urchins. SAPs have several effects on sea urchin spermatozoa: stimulate sperm respiration and motility through intracellular alkalinization, transient elevation of cAMP, cGMP and Ca2+ levels in sperm cells [, ].
Probab=22.68 E-value=17 Score=14.82 Aligned_cols=6 Identities=67% Similarity=1.304 Sum_probs=3.0
Q ss_pred EEcHHH
Q 024826 192 GWSLGA 197 (262)
Q Consensus 192 G~SlGg 197 (262)
|++|||
T Consensus 1 gf~l~G 6 (10)
T PF08250_consen 1 GFSLGG 6 (10)
T ss_pred Cccccc
Confidence 455554
No 437
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=22.68 E-value=2.1e+02 Score=24.74 Aligned_cols=88 Identities=8% Similarity=0.007 Sum_probs=42.3
Q ss_pred CCCcHHHHHHHHHHHh-CCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcH-HHHHHHH
Q 024826 125 GSEDSYVRHMLLRARS-KGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSL-GANILIR 202 (262)
Q Consensus 125 ~~~~~y~~~~~~~l~~-~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~Sl-Gg~ia~~ 202 (262)
.-+..-++.+++++.+ .|.+-+++. ++.+....+...+. .++++.+.+..+.+--.++|.+- .-.-+..
T Consensus 20 ~iD~~~~~~li~~l~~~~Gv~gi~v~-----GstGE~~~Ls~eEr----~~~~~~~~~~~~~~~~viagvg~~~t~~ai~ 90 (293)
T PRK04147 20 QIDEQGLRRLVRFNIEKQGIDGLYVG-----GSTGEAFLLSTEEK----KQVLEIVAEEAKGKVKLIAQVGSVNTAEAQE 90 (293)
T ss_pred CcCHHHHHHHHHHHHhcCCCCEEEEC-----CCccccccCCHHHH----HHHHHHHHHHhCCCCCEEecCCCCCHHHHHH
Confidence 3344445778888988 999888775 23322222222222 33333333332322335666643 3333333
Q ss_pred HHhhcCCCCCCceEEEEcCCc
Q 024826 203 YLGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 203 ~a~~~~~~~~i~~~v~l~~p~ 223 (262)
++... ++..+++++++ +|+
T Consensus 91 ~a~~a-~~~Gad~v~v~-~P~ 109 (293)
T PRK04147 91 LAKYA-TELGYDAISAV-TPF 109 (293)
T ss_pred HHHHH-HHcCCCEEEEe-CCc
Confidence 33322 22236675555 444
No 438
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=22.57 E-value=83 Score=25.89 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=25.2
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhC--CceEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSK--GWRVV 146 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~--G~~vv 146 (262)
....++++||++|+..+.....+++.+.+. +..++
T Consensus 123 ~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~ 159 (216)
T PF00091_consen 123 SLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPII 159 (216)
T ss_dssp TESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEE
T ss_pred ccccceecccccceeccccccccchhhhcccccccee
Confidence 456699999999987777766777777665 44443
No 439
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=22.53 E-value=1.8e+02 Score=24.76 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=27.0
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGD 155 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~ 155 (262)
|-+. |=+|-....-..+++..+++.|++|+++|.--.|.
T Consensus 4 iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~ 42 (274)
T PRK13235 4 VAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKAD 42 (274)
T ss_pred EEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCccc
Confidence 4455 54444444556678888999999999998754444
No 440
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=22.51 E-value=2.2e+02 Score=22.90 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCceEEEEcCC-CCCCC-CCCCc-------CCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHH
Q 024826 129 SYVRHMLLRARSKGWRVVVFNSR-GCGDS-PVTTP-------QFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANI 199 (262)
Q Consensus 129 ~y~~~~~~~l~~~G~~vv~~d~r-G~G~s-~~~~~-------~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~i 199 (262)
+|...++..+.+.|+.+.++..- +--.. ....+ ...+........+.++.+. ..+=++|.++|..+
T Consensus 10 sft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~-----~~~PiLGIClG~Ql 84 (193)
T PRK08857 10 SFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGISLQAIEHFA-----GKLPILGVCLGHQA 84 (193)
T ss_pred CcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHCcchHHHHHHhc-----CCCCEEEEcHHHHH
Confidence 45557788888889888766543 21000 00000 1111000011233444332 24669999999999
Q ss_pred HHHHHh
Q 024826 200 LIRYLG 205 (262)
Q Consensus 200 a~~~a~ 205 (262)
...+++
T Consensus 85 ia~a~G 90 (193)
T PRK08857 85 IAQVFG 90 (193)
T ss_pred HHHHhC
Confidence 888775
No 441
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=22.44 E-value=1.7e+02 Score=20.36 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhCCceEEEEcCC
Q 024826 129 SYVRHMLLRARSKGWRVVVFNSR 151 (262)
Q Consensus 129 ~y~~~~~~~l~~~G~~vv~~d~r 151 (262)
.-...++..++++|.+|+++|.-
T Consensus 15 t~~~~la~~~~~~~~~vl~~d~d 37 (104)
T cd02042 15 TTAVNLAAALARRGKRVLLIDLD 37 (104)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCC
Confidence 33456677778899999998853
No 442
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=22.42 E-value=1e+02 Score=26.81 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=21.8
Q ss_pred EEECCCCCCCCcHHHHHHHHHHHhCCceEEEEc
Q 024826 117 ILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFN 149 (262)
Q Consensus 117 v~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d 149 (262)
|++++.+.+.+......++..+.++||.|.++-
T Consensus 2 ~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~ 34 (350)
T cd03785 2 ILIAGGGTGGHIFPALALAEELRERGAEVLFLG 34 (350)
T ss_pred EEEEecCchhhhhHHHHHHHHHHhCCCEEEEEE
Confidence 344444333444455688889999999998773
No 443
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=22.40 E-value=1.6e+02 Score=24.69 Aligned_cols=75 Identities=21% Similarity=0.357 Sum_probs=44.0
Q ss_pred EEECCCCCCCCcHHHHHHHHHHHhCCce---EEEEcCCCCCCCCCCCcC-----CCCcCcHHHHHHHHHHHHhhCCCCcE
Q 024826 117 ILMPGLTGGSEDSYVRHMLLRARSKGWR---VVVFNSRGCGDSPVTTPQ-----FYSASFLGDMQEVVAHVGSKYPKAHL 188 (262)
Q Consensus 117 v~lHG~~g~~~~~y~~~~~~~l~~~G~~---vv~~d~rG~G~s~~~~~~-----~~~~~~~~Dl~~~l~~l~~~~~~~~i 188 (262)
|++-|+.|-.. .|....+.+....+-. +.+.-+-|...+..+.+. .-..++.+.++.++++++...|..+|
T Consensus 40 v~~RGysGynS-RwALkvL~~ifp~~~s~~p~lvtVffGaNDs~l~~~~~~~~hvPl~Ey~dNlr~iv~~lks~~~~~ri 118 (245)
T KOG3035|consen 40 VLLRGYSGYNS-RWALKVLPEIFPKGSSIQPVLVTVFFGANDSCLPEPSSLGQHVPLEEYKDNLRKIVSHLKSLSPETRI 118 (245)
T ss_pred hhhcccccchh-HHHHHHhhhhccccccCCceEEEEEecCccccCCCCCCCCCccCHHHHHHHHHHHHHHhhccCCcceE
Confidence 56677755432 3444444444444422 445555555554332222 12278899999999999987777777
Q ss_pred EEEE
Q 024826 189 YAVG 192 (262)
Q Consensus 189 ~lvG 192 (262)
++++
T Consensus 119 Ilit 122 (245)
T KOG3035|consen 119 ILIT 122 (245)
T ss_pred EEec
Confidence 7764
No 444
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=22.33 E-value=2e+02 Score=23.21 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=22.7
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcEEEEEE
Q 024826 166 ASFLGDMQEVVAHVGSKYPKAHLYAVGW 193 (262)
Q Consensus 166 ~~~~~Dl~~~l~~l~~~~~~~~i~lvG~ 193 (262)
..+.+++..+++.++..+|..+|++++.
T Consensus 109 ~~~~~~l~~ii~~l~~~~P~~~Iil~~~ 136 (214)
T cd01820 109 EEIAEGILAIVEEIREKLPNAKILLLGL 136 (214)
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 4567788889999998888888888873
No 445
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=22.28 E-value=2.4e+02 Score=25.81 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=26.6
Q ss_pred EEEEECC-CCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCC
Q 024826 115 VLILMPG-LTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGD 155 (262)
Q Consensus 115 ~vv~lHG-~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~ 155 (262)
.||.+-. =+|.....-..+++..++..|++|+++|.--.|.
T Consensus 122 ~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~ 163 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQAS 163 (405)
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCC
Confidence 4444443 3333333445677888999999999999865553
No 446
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=22.27 E-value=79 Score=25.27 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=23.5
Q ss_pred cEEEEECCCCCCCC-cHHHHHHHHHHHhCCceEEEEc
Q 024826 114 PVLILMPGLTGGSE-DSYVRHMLLRARSKGWRVVVFN 149 (262)
Q Consensus 114 p~vv~lHG~~g~~~-~~y~~~~~~~l~~~G~~vv~~d 149 (262)
.-||++|-...... ...+..++..+.++||+.+.++
T Consensus 152 g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~vtl~ 188 (191)
T TIGR02764 152 GDIILLHASDSAKQTVKALPTIIKKLKEKGYEFVTIS 188 (191)
T ss_pred CCEEEEeCCCCcHhHHHHHHHHHHHHHHCCCEEEEHH
Confidence 34899994211111 1345677888999999998764
No 447
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=22.26 E-value=1.7e+02 Score=25.14 Aligned_cols=37 Identities=19% Similarity=0.394 Sum_probs=27.4
Q ss_pred cEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcC
Q 024826 114 PVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNS 150 (262)
Q Consensus 114 p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~ 150 (262)
+.++.+=|-+|.....-...++..+.+.|++|.++|.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4344444888877766677888888889999988874
No 448
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=22.18 E-value=2.5e+02 Score=22.71 Aligned_cols=40 Identities=8% Similarity=0.159 Sum_probs=24.2
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHh-CCceEEEEcCCC
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARS-KGWRVVVFNSRG 152 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~-~G~~vv~~d~rG 152 (262)
..+|.++-+-+|...+.....++..+++ .|++|+++|.-=
T Consensus 35 ~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~ 75 (207)
T TIGR03018 35 NNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADL 75 (207)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 3445555433333343444567777775 699999998653
No 449
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=22.17 E-value=1.4e+02 Score=29.14 Aligned_cols=38 Identities=16% Similarity=0.372 Sum_probs=30.7
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEc
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFN 149 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d 149 (262)
.+|.+|++.|+.|+..+...+.+...+...|..++.+|
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~ 495 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLD 495 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEc
Confidence 45889999999998887777777777777788888776
No 450
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=22.04 E-value=1.1e+02 Score=29.19 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=22.5
Q ss_pred hhCCCCcEEEEEEcHHHHHHHHHHhhcC
Q 024826 181 SKYPKAHLYAVGWSLGANILIRYLGHES 208 (262)
Q Consensus 181 ~~~~~~~i~lvG~SlGg~ia~~~a~~~~ 208 (262)
+.++-.|-+++|||+|=..++..++-..
T Consensus 260 ~~~GI~Pdav~GHSlGE~aAa~aAGvls 287 (538)
T TIGR02816 260 DEFAIKPDFALGYSKGEASMWASLGVWK 287 (538)
T ss_pred HhcCCCCCEEeecCHHHHHHHHHhCCCC
Confidence 4566678899999999988888887653
No 451
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.02 E-value=3.1e+02 Score=19.76 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=12.7
Q ss_pred HHHHHHHHHhCCceEEEEc
Q 024826 131 VRHMLLRARSKGWRVVVFN 149 (262)
Q Consensus 131 ~~~~~~~l~~~G~~vv~~d 149 (262)
..-+...+...||+|+...
T Consensus 16 ~~~~~~~l~~~G~~V~~lg 34 (119)
T cd02067 16 KNIVARALRDAGFEVIDLG 34 (119)
T ss_pred HHHHHHHHHHCCCEEEECC
Confidence 3445566778899996554
No 452
>PRK07667 uridine kinase; Provisional
Probab=21.88 E-value=2e+02 Score=23.07 Aligned_cols=42 Identities=12% Similarity=0.334 Sum_probs=32.2
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGC 153 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~ 153 (262)
....||.+-|..|+..+.....+...+.+.|..+.+++...+
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 345788888998888777667777777778888888777664
No 453
>PRK08105 flavodoxin; Provisional
Probab=21.87 E-value=3.7e+02 Score=20.60 Aligned_cols=75 Identities=9% Similarity=0.059 Sum_probs=43.3
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCc----------CCCCcCcHHHHHHHHHHHHhh---
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTP----------QFYSASFLGDMQEVVAHVGSK--- 182 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~----------~~~~~~~~~Dl~~~l~~l~~~--- 182 (262)
|.++-|-..+..+.+...+...+.+.|+.|.+.+.... .+.... .....+..++...+.+.+++.
T Consensus 4 i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~--~~~~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~~~~ 81 (149)
T PRK08105 4 VGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPEL--SDWQPYQDELVLVVTSTTGQGDLPDSIVPLFQALKDTAGY 81 (149)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhC--CchhcccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCcc
Confidence 56666655554556666777778888999988886432 111111 011234556777777777754
Q ss_pred CCCCcEEEEE
Q 024826 183 YPKAHLYAVG 192 (262)
Q Consensus 183 ~~~~~i~lvG 192 (262)
..+.++.++|
T Consensus 82 l~~~~~avfG 91 (149)
T PRK08105 82 QPNLRYGVIA 91 (149)
T ss_pred cCCCEEEEEe
Confidence 2233555655
No 454
>TIGR02841 spore_YyaC putative sporulation protein YyaC. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, also called YyaC, is a member of that panel and is otherwise uncharacterized. The second round of PSI-BLAST shows many similarities to the germination protease GPR, which is found in exactly the same set of organisms and has a known role in the sporulation/germination process.
Probab=21.73 E-value=3.5e+02 Score=20.90 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHhhCCCCcEEEEEEcHHH
Q 024826 168 FLGDMQEVVAHVGSKYPKAHLYAVGWSLGA 197 (262)
Q Consensus 168 ~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg 197 (262)
.+..+.+.++.+.++|++.-|.++=.|+|-
T Consensus 45 HA~NL~e~l~~I~~~~~~~~iIAIDAcLG~ 74 (140)
T TIGR02841 45 HAKNLEEKLKIIKKKHPNPFIIAIDACLGR 74 (140)
T ss_pred ccccHHHHHHHHHHhCCCCeEEEEECccCC
Confidence 356788999999999999889999989984
No 455
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=21.72 E-value=1.8e+02 Score=22.89 Aligned_cols=34 Identities=18% Similarity=0.093 Sum_probs=23.3
Q ss_pred HHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcCC
Q 024826 175 VVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESH 209 (262)
Q Consensus 175 ~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~~ 209 (262)
+++.+.+. +...=.++|.|.|+.++..++.....
T Consensus 18 vl~~L~e~-g~~~d~i~GtSaGAi~aa~~a~g~~~ 51 (175)
T cd07228 18 VLRALEEE-GIEIDIIAGSSIGALVGALYAAGHLD 51 (175)
T ss_pred HHHHHHHC-CCCeeEEEEeCHHHHHHHHHHcCCCH
Confidence 34444433 22356799999999999999876543
No 456
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=21.65 E-value=78 Score=27.67 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=18.8
Q ss_pred hCCCCcEEEEEEcHHHHHHHHHHhh
Q 024826 182 KYPKAHLYAVGWSLGANILIRYLGH 206 (262)
Q Consensus 182 ~~~~~~i~lvG~SlGg~ia~~~a~~ 206 (262)
..+-.|-+++|||+|=..++..++.
T Consensus 80 ~~Gi~P~~v~GhSlGE~aA~~aaG~ 104 (318)
T PF00698_consen 80 SWGIKPDAVIGHSLGEYAALVAAGA 104 (318)
T ss_dssp HTTHCESEEEESTTHHHHHHHHTTS
T ss_pred ccccccceeeccchhhHHHHHHCCc
Confidence 3455688999999998877765543
No 457
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=21.65 E-value=87 Score=25.21 Aligned_cols=38 Identities=26% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEEECCCCCCCCcHHHHHH-HHHHHhCCceEEEEcCCCCC
Q 024826 116 LILMPGLTGGSEDSYVRHM-LLRARSKGWRVVVFNSRGCG 154 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~-~~~l~~~G~~vv~~d~rG~G 154 (262)
|.++.|..|+..+.+.... +....+.|..|+. |.+|.-
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~ 40 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLN 40 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcc
Confidence 6788899888775444444 4455677888877 988764
No 458
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=21.60 E-value=4.9e+02 Score=22.53 Aligned_cols=68 Identities=15% Similarity=0.007 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHH
Q 024826 131 VRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANIL 200 (262)
Q Consensus 131 ~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia 200 (262)
.+.+++..++.|+.-+++|--=.+.............-..|+.+++++.+++ +-.|.++.||-++.-.
T Consensus 34 ~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~K--gVgi~lw~~~~~~~~~ 101 (273)
T PF10566_consen 34 QKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEK--GVGIWLWYHSETGGNV 101 (273)
T ss_dssp HHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHT--T-EEEEEEECCHTTBH
T ss_pred HHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHc--CCCEEEEEeCCcchhh
Confidence 4778899999999999997421110000111111122237899999999987 3369999999984333
No 459
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=21.59 E-value=1.4e+02 Score=20.90 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=22.1
Q ss_pred CCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCC
Q 024826 111 PDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSR 151 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~r 151 (262)
.+++++|+|....- + ...+..+.++||..+ .++.
T Consensus 60 ~~~~ivv~C~~G~r----S--~~aa~~L~~~G~~~~-~~l~ 93 (110)
T COG0607 60 DDDPIVVYCASGVR----S--AAAAAALKLAGFTNV-YNLD 93 (110)
T ss_pred CCCeEEEEeCCCCC----h--HHHHHHHHHcCCccc-cccC
Confidence 47888998875421 1 234567888999887 4443
No 460
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.59 E-value=1.7e+02 Score=25.94 Aligned_cols=44 Identities=32% Similarity=0.524 Sum_probs=29.1
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHh-CCceEEEEcCCCCCC
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARS-KGWRVVVFNSRGCGD 155 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~-~G~~vv~~d~rG~G~ 155 (262)
.+|+=++++.-.|+..+..-+.+...+.+ .|-.+++-|.+|-|+
T Consensus 27 ~~~it~Ivp~~~GGg~D~~aR~~~~~l~k~lg~~v~V~N~pGagG 71 (319)
T COG3181 27 ERPITIIVPAAAGGGTDQTARALAESLSKELGQPVVVDNKPGAGG 71 (319)
T ss_pred CCCeEEEEecCCCChHHHHHHHHHHHHHHHhCCCEEEEecCCCcc
Confidence 56677777777777666655555555533 477788888877764
No 461
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.39 E-value=1.5e+02 Score=26.07 Aligned_cols=66 Identities=17% Similarity=0.281 Sum_probs=42.9
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCC----C---CcCCCC--cCcHHHHHHHHHHHHhhCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPV----T---TPQFYS--ASFLGDMQEVVAHVGSKYPK 185 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~----~---~~~~~~--~~~~~Dl~~~l~~l~~~~~~ 185 (262)
+|++-|.+++- -+.++.+++++|..++++|--..|..+. . ....|. -...+|+.+..+.++++.++
T Consensus 40 ~vLITGgg~Gl----Gr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~ 114 (300)
T KOG1201|consen 40 IVLITGGGSGL----GRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGD 114 (300)
T ss_pred EEEEeCCCchH----HHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 67777754332 3677889999999999999876653221 0 011111 23457888899999988774
No 462
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=21.35 E-value=1.8e+02 Score=22.68 Aligned_cols=32 Identities=19% Similarity=0.030 Sum_probs=22.2
Q ss_pred HHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhc
Q 024826 175 VVAHVGSKYPKAHLYAVGWSLGANILIRYLGHE 207 (262)
Q Consensus 175 ~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~ 207 (262)
+++.+.+. +...=.++|.|.|+.++..++...
T Consensus 18 vl~~L~~~-~~~~d~i~GtSaGal~a~~~a~g~ 49 (175)
T cd07205 18 VLKALEEA-GIPIDIVSGTSAGAIVGALYAAGY 49 (175)
T ss_pred HHHHHHHc-CCCeeEEEEECHHHHHHHHHHcCC
Confidence 44455443 222457999999999999998654
No 463
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=21.33 E-value=1.5e+02 Score=24.34 Aligned_cols=33 Identities=18% Similarity=0.032 Sum_probs=23.4
Q ss_pred HHHHHHhhCCCCcEEEEEEcHHHHHHHHHHhhcC
Q 024826 175 VVAHVGSKYPKAHLYAVGWSLGANILIRYLGHES 208 (262)
Q Consensus 175 ~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~~~~ 208 (262)
+++.+.+.. ...=.+.|.|.|+.+++.++...+
T Consensus 16 vl~aL~e~g-~~~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 16 VLKALAEAG-IEPDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHHHcC-CCCCEEEEECHHHHHHHHHHcCCc
Confidence 444444432 235579999999999999998664
No 464
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.33 E-value=3.1e+02 Score=24.19 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCceEE-EEcCCCCCCC
Q 024826 129 SYVRHMLLRARSKGWRVV-VFNSRGCGDS 156 (262)
Q Consensus 129 ~y~~~~~~~l~~~G~~vv-~~d~rG~G~s 156 (262)
.-++.++.+++++|.+|+ -+|.|||..+
T Consensus 68 ~di~elv~yA~~rgI~vIPEId~PGH~~a 96 (311)
T cd06570 68 EQIREVVAYARDRGIRVVPEIDVPGHASA 96 (311)
T ss_pred HHHHHHHHHHHHcCCEEEEeecCccchHH
Confidence 346888999999999997 7999999643
No 465
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=21.32 E-value=3.6e+02 Score=23.10 Aligned_cols=89 Identities=10% Similarity=0.055 Sum_probs=42.4
Q ss_pred CCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcH-HHHHHHHH
Q 024826 125 GSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSL-GANILIRY 203 (262)
Q Consensus 125 ~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~Sl-Gg~ia~~~ 203 (262)
.-+..-++.++.++.+.|.+-+++. +|.+....+...+..+=+..+++.+.. +--+++|.+- .-.-+...
T Consensus 15 ~iD~~~~~~~i~~l~~~Gv~Gi~~~-----GstGE~~~Ls~~Er~~~~~~~~~~~~~----~~~vi~gv~~~s~~~~i~~ 85 (285)
T TIGR00674 15 SVDFAALEKLIDFQIENGTDAIVVV-----GTTGESPTLSHEEHKKVIEFVVDLVNG----RVPVIAGTGSNATEEAISL 85 (285)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEC-----ccCcccccCCHHHHHHHHHHHHHHhCC----CCeEEEeCCCccHHHHHHH
Confidence 3344445778888889999888764 233222222223333333344444332 2234556542 22233333
Q ss_pred HhhcCCCCCCceEEEEcCCc
Q 024826 204 LGHESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 204 a~~~~~~~~i~~~v~l~~p~ 223 (262)
+... ++..+++++++.|.+
T Consensus 86 a~~a-~~~Gad~v~v~pP~y 104 (285)
T TIGR00674 86 TKFA-EDVGADGFLVVTPYY 104 (285)
T ss_pred HHHH-HHcCCCEEEEcCCcC
Confidence 3322 222367755555543
No 466
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=21.24 E-value=3e+02 Score=20.03 Aligned_cols=66 Identities=14% Similarity=0.054 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCceEEEEcCCCCCCCC---CCCcCCCCcCcH----HHHHHHHHHHHhhCCCCcEEEEEEcH
Q 024826 130 YVRHMLLRARSKGWRVVVFNSRGCGDSP---VTTPQFYSASFL----GDMQEVVAHVGSKYPKAHLYAVGWSL 195 (262)
Q Consensus 130 y~~~~~~~l~~~G~~vv~~d~rG~G~s~---~~~~~~~~~~~~----~Dl~~~l~~l~~~~~~~~i~lvG~Sl 195 (262)
....+...+.+.|+.|+..+...-+..- .+.-....-+|. ++..++++.++.+...-||++++-..
T Consensus 5 ~~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 5 ASRELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWDGEEEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp HHHHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECHHHHHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcccccchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 4567777887789999888754311000 111111112333 56778888888887777999998755
No 467
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=21.16 E-value=2.3e+02 Score=23.95 Aligned_cols=38 Identities=8% Similarity=0.172 Sum_probs=25.4
Q ss_pred cEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCC
Q 024826 114 PVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSR 151 (262)
Q Consensus 114 p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~r 151 (262)
.+|.+.-+-+|...+.-...++..+++.|.+|+++|.-
T Consensus 104 ~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 104 KALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 44445444444444444567778888899999999973
No 468
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=21.07 E-value=2.2e+02 Score=19.28 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=19.2
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCce-EEEE
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWR-VVVF 148 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~-vv~~ 148 (262)
++++||+|.+. . . ....+..+.+.||. |..+
T Consensus 56 ~~~ivv~c~~g--~-~---s~~a~~~l~~~G~~~v~~l 87 (96)
T cd01444 56 DRPVVVYCYHG--N-S---SAQLAQALREAGFTDVRSL 87 (96)
T ss_pred CCCEEEEeCCC--C-h---HHHHHHHHHHcCCceEEEc
Confidence 67889998832 1 1 12345567788985 5443
No 469
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=21.06 E-value=2.1e+02 Score=25.55 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=24.9
Q ss_pred CCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCC
Q 024826 124 GGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSP 157 (262)
Q Consensus 124 g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~ 157 (262)
|......+..+++.+.++|+++.++ .||+|+..
T Consensus 68 GTGKTP~v~~La~~l~~~G~~~~Il-SRGYg~~~ 100 (338)
T PRK01906 68 GTGKTPTVIALVDALRAAGFTPGVV-SRGYGAKI 100 (338)
T ss_pred CCChHHHHHHHHHHHHHcCCceEEE-ecCCCCCC
Confidence 4445567778888899999998555 68998753
No 470
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=21.04 E-value=1.1e+02 Score=25.55 Aligned_cols=34 Identities=21% Similarity=0.520 Sum_probs=27.0
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEc
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFN 149 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d 149 (262)
+|++-|..|+..+...+.+...+...|+.++.++
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~ 34 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILG 34 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEc
Confidence 4778899888887777777878877788888775
No 471
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=20.97 E-value=1e+02 Score=23.44 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=25.0
Q ss_pred EEEEECCCCCCCCcHHHHHHHHHHHhC-CceEEEEcC
Q 024826 115 VLILMPGLTGGSEDSYVRHMLLRARSK-GWRVVVFNS 150 (262)
Q Consensus 115 ~vv~lHG~~g~~~~~y~~~~~~~l~~~-G~~vv~~d~ 150 (262)
.|++++-.....+..++..++..|.+. |++|+ +|.
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~-lD~ 37 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVI-LDQ 37 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCcee-ecH
Confidence 466676665555556788888889888 99886 443
No 472
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=20.86 E-value=2.4e+02 Score=21.15 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=25.4
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCG 154 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G 154 (262)
|.+..+-+|......-..++..++++|.+|+++|.-..+
T Consensus 2 i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~ 40 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGL 40 (139)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 344555444444344456677888899999999977544
No 473
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=20.81 E-value=3.6e+02 Score=22.91 Aligned_cols=87 Identities=13% Similarity=0.104 Sum_probs=41.8
Q ss_pred CcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHH-HHHHHh
Q 024826 127 EDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANI-LIRYLG 205 (262)
Q Consensus 127 ~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~i-a~~~a~ 205 (262)
+..-+..+++++.+.|.+.++++ ++.+....+.. ++-.++++.+.+..+.+--.++|.+-...- +..++.
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~-----GstGE~~~ls~----~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~ 86 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVL-----GTTGEAPTLTD----EERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELAR 86 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC-----CCCcccccCCH----HHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHH
Confidence 33445677888888999888775 23322222222 233344444443322222344665543332 444443
Q ss_pred hcCCCCCCceEEEEcCCc
Q 024826 206 HESHSCPLSGAVSLCNPF 223 (262)
Q Consensus 206 ~~~~~~~i~~~v~l~~p~ 223 (262)
... ...+++++++.|.+
T Consensus 87 ~a~-~~Gad~v~v~pP~y 103 (281)
T cd00408 87 HAE-EAGADGVLVVPPYY 103 (281)
T ss_pred HHH-HcCCCEEEECCCcC
Confidence 322 22366755555544
No 474
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=20.81 E-value=1.9e+02 Score=25.10 Aligned_cols=38 Identities=16% Similarity=0.340 Sum_probs=29.2
Q ss_pred CcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcC
Q 024826 113 SPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNS 150 (262)
Q Consensus 113 ~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~ 150 (262)
.+.+|.+-|..|...+..+..+...+.+.|++|.+++.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~ 70 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAV 70 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 34456666988888888888888888888998876553
No 475
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=20.69 E-value=93 Score=28.28 Aligned_cols=36 Identities=33% Similarity=0.719 Sum_probs=27.4
Q ss_pred EEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCC
Q 024826 117 ILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRG 152 (262)
Q Consensus 117 v~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG 152 (262)
+++.|.+|+.....+..++..+.++|.+++++|.-|
T Consensus 18 ~li~G~~GsGKT~~i~~ll~~~~~~g~~~iI~D~kg 53 (386)
T PF10412_consen 18 ILIIGATGSGKTQAIRHLLDQIRARGDRAIIYDPKG 53 (386)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHHHHTT-EEEEEEETT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCEEEEEECCc
Confidence 667788887777777888888888999999999643
No 476
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=20.69 E-value=3.2e+02 Score=24.04 Aligned_cols=58 Identities=10% Similarity=0.213 Sum_probs=41.9
Q ss_pred HhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHh
Q 024826 139 RSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLG 205 (262)
Q Consensus 139 ~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~ 205 (262)
..+.|+-+++- +.+...-.+..-++.+++.++++|.+.. ...-+..++||+.++.+.-
T Consensus 95 ~~~~~DglIIT-----GAPvE~l~Fe~V~YW~El~~i~dwa~~~----v~stl~iCWgAqAaLy~~y 152 (298)
T PF04204_consen 95 KDRKFDGLIIT-----GAPVEQLPFEEVDYWDELTEIFDWAKTH----VTSTLFICWGAQAALYHFY 152 (298)
T ss_dssp TTS-EEEEEE--------TTTTS-GGGSTTHHHHHHHHHHHHHH----EEEEEEETHHHHHHHHHHH
T ss_pred hhCCCCEEEEe-----CCCcCCCCcccCCcHHHHHHHHHHHHHc----CCcchhhhHHHHHHHHHHc
Confidence 45678877774 3444434444478899999999999998 7888899999999888764
No 477
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=20.64 E-value=2e+02 Score=23.96 Aligned_cols=39 Identities=18% Similarity=0.375 Sum_probs=26.9
Q ss_pred EEEEECCCC-CCCCcHHHHHHHHHHHhCCceEEEEcCCCC
Q 024826 115 VLILMPGLT-GGSEDSYVRHMLLRARSKGWRVVVFNSRGC 153 (262)
Q Consensus 115 ~vv~lHG~~-g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~ 153 (262)
+++++++.. .+..+.....++..+.+.|+.|.++.....
T Consensus 2 I~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (348)
T cd03820 2 ILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKG 41 (348)
T ss_pred eEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 456667665 333445567788888889999988876544
No 478
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=20.50 E-value=2e+02 Score=23.11 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=21.7
Q ss_pred cEEEEECCCCCCCCcHHHHHHHHHHHhCCc
Q 024826 114 PVLILMPGLTGGSEDSYVRHMLLRARSKGW 143 (262)
Q Consensus 114 p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~ 143 (262)
-.++++||++|+..+.....+++.+.+.+.
T Consensus 84 d~~~i~~slgGGTGsG~~~~i~~~~~~~~~ 113 (192)
T smart00864 84 DGVFITAGMGGGTGTGAAPVIAEIAKEYGI 113 (192)
T ss_pred CEEEEeccCCCCccccHHHHHHHHHHHcCC
Confidence 668999999988777666666666665553
No 479
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=20.38 E-value=2.3e+02 Score=25.24 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=28.7
Q ss_pred CcEEEEE-CCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCC
Q 024826 113 SPVLILM-PGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGC 153 (262)
Q Consensus 113 ~p~vv~l-HG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~ 153 (262)
.+.++++ |...+.....- ++++..++++|++|+-+|..|.
T Consensus 4 ~~~~~~~~~~~w~~~~~~~-qhl~~~~a~~~~~vl~v~~~~~ 44 (373)
T cd04950 4 RPDILVFSADDWDFLWQRP-QHLAARLAERGNRVLYVEPPGL 44 (373)
T ss_pred CCeEEEecccCcCCCCCCH-HHHHHHHHhCCCeEEEEeCCCc
Confidence 4445555 65555444333 7888899889999999999886
No 480
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=20.32 E-value=4.3e+02 Score=20.76 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=25.4
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHHHHHHHHHh
Q 024826 166 ASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLG 205 (262)
Q Consensus 166 ~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg~ia~~~a~ 205 (262)
..|...+.+++++.... .+-++|.++|..++...++
T Consensus 64 ~~~~~~~~~~i~~~~~~----~~pilgiC~G~q~l~~~lG 99 (188)
T cd01741 64 YPWLKKLKELIRQALAA----GKPVLGICLGHQLLARALG 99 (188)
T ss_pred ChHHHHHHHHHHHHHHC----CCCEEEECccHHHHHHHhC
Confidence 34455666666666544 4679999999998887764
No 481
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=20.26 E-value=4.6e+02 Score=21.02 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=46.1
Q ss_pred CCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEE-EEcCC-C-----CCCCCCCCcCCCC---------cCcHHHHHHH
Q 024826 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVV-VFNSR-G-----CGDSPVTTPQFYS---------ASFLGDMQEV 175 (262)
Q Consensus 112 ~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv-~~d~r-G-----~G~s~~~~~~~~~---------~~~~~Dl~~~ 175 (262)
.--++=+++-++. .-+...++++.++||..+ =++-. | +..+++.....|. ....+.+..=
T Consensus 66 kfETfSYLPpLtd----eqI~kQVeYli~~GW~pclEf~~~~~~~~r~~~~s~~yyD~rYWtMWKLPMFg~tD~~~Vl~E 141 (176)
T PLN02289 66 KFETLSYLPDLTD----EELAKEVDYLLRNKWVPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDSAQVLKE 141 (176)
T ss_pred ceeeeecCCCCCH----HHHHHHHHHHHhCCCeeeeeeccCCceeEecCCCCCCcccCceeEEeccccCCCCCHHHHHHH
Confidence 4567788888743 335677899999998664 33322 2 3333322111111 1223344444
Q ss_pred HHHHHhhCCCCcEEEEEEc
Q 024826 176 VAHVGSKYPKAHLYAVGWS 194 (262)
Q Consensus 176 l~~l~~~~~~~~i~lvG~S 194 (262)
++..++.||+.-|-++|+.
T Consensus 142 i~eC~kayP~~yIRiigFD 160 (176)
T PLN02289 142 LEEAKKAYPNAFIRIIGFD 160 (176)
T ss_pred HHHHHHHCCcceEEEEEEE
Confidence 5556778999889899874
No 482
>COG0400 Predicted esterase [General function prediction only]
Probab=20.25 E-value=4.9e+02 Score=21.39 Aligned_cols=41 Identities=12% Similarity=-0.009 Sum_probs=28.9
Q ss_pred CCCcEEEEECCCCCCCC-cHHHHHHHHHHHhCCceEEEEcCC
Q 024826 111 PDSPVLILMPGLTGGSE-DSYVRHMLLRARSKGWRVVVFNSR 151 (262)
Q Consensus 111 ~~~p~vv~lHG~~g~~~-~~y~~~~~~~l~~~G~~vv~~d~r 151 (262)
.....|++.||-..-.- ......+...+.+.|.+|-.-.+.
T Consensus 144 ~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~ 185 (207)
T COG0400 144 LAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE 185 (207)
T ss_pred cCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 35677999999865431 223356677888899999887775
No 483
>KOG4153 consensus Fructose 1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=20.23 E-value=1.9e+02 Score=24.99 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=22.9
Q ss_pred CCCCcEEEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEc
Q 024826 110 PPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFN 149 (262)
Q Consensus 110 ~~~~p~vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d 149 (262)
.+++|+.+++||..|++.. ......+.|..=+-+|
T Consensus 254 ~~~KpvFlVfHGgSGssvn-----efktgIenGVvKvNvd 288 (358)
T KOG4153|consen 254 KSKKPVFLVFHGGSGSSVN-----EFKTGIENGVVKVNVD 288 (358)
T ss_pred cccCceEEEEeCCCCccHH-----HHHHHHhcCeEEEeec
Confidence 3578999999998776642 2334556665555444
No 484
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=20.05 E-value=3.6e+02 Score=23.97 Aligned_cols=68 Identities=19% Similarity=0.395 Sum_probs=41.0
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEE--cCCCC----CCCCCCCcCCCC----cCcHHHHHHHHHHHHhhCCC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVF--NSRGC----GDSPVTTPQFYS----ASFLGDMQEVVAHVGSKYPK 185 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~--d~rG~----G~s~~~~~~~~~----~~~~~Dl~~~l~~l~~~~~~ 185 (262)
.|++-|- ++.+-+.++..+.++||+|++= +-.|. |... +++... -.-.+.+.++.+++++..++
T Consensus 31 ~VlITGC----DSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~--s~rl~t~~LDVT~~esi~~a~~~V~~~l~~ 104 (322)
T KOG1610|consen 31 AVLITGC----DSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK--SPRLRTLQLDVTKPESVKEAAQWVKKHLGE 104 (322)
T ss_pred EEEEecC----CcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc--CCcceeEeeccCCHHHHHHHHHHHHHhccc
Confidence 5777764 3355578899999999999853 33331 1110 222211 12245788888999887766
Q ss_pred CcEE
Q 024826 186 AHLY 189 (262)
Q Consensus 186 ~~i~ 189 (262)
..+.
T Consensus 105 ~gLw 108 (322)
T KOG1610|consen 105 DGLW 108 (322)
T ss_pred ccce
Confidence 5533
No 485
>PRK09004 FMN-binding protein MioC; Provisional
Probab=20.05 E-value=4.1e+02 Score=20.31 Aligned_cols=75 Identities=12% Similarity=0.252 Sum_probs=42.1
Q ss_pred EEEECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCc--------CCCCcCcHHHHHHHHHHHHhh---CC
Q 024826 116 LILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTP--------QFYSASFLGDMQEVVAHVGSK---YP 184 (262)
Q Consensus 116 vv~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~--------~~~~~~~~~Dl~~~l~~l~~~---~~ 184 (262)
|.++.|-..+..+..-..+...+.+.|+.+.+.|.... .+.... .....+.-++...+.++++.. ..
T Consensus 4 i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~~--~~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~~~l~ 81 (146)
T PRK09004 4 ITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPLL--DDLSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQKPDLS 81 (146)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCCH--HHhccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCCCCC
Confidence 55666654444445556666777788998887775321 111111 111234456677777777653 33
Q ss_pred CCcEEEEE
Q 024826 185 KAHLYAVG 192 (262)
Q Consensus 185 ~~~i~lvG 192 (262)
..++.++|
T Consensus 82 g~~~aVfG 89 (146)
T PRK09004 82 QVRFAAIG 89 (146)
T ss_pred CCEEEEEe
Confidence 44677777
No 486
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.03 E-value=4.4e+02 Score=25.13 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=42.2
Q ss_pred EECCCCCCCCcHHHHHHHHHHHhCCceEEEEcCCCCCCCCCCCcCCCCcCcHHHHHHHHHHHHhhCCCCcEEEEEEcHHH
Q 024826 118 LMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGA 197 (262)
Q Consensus 118 ~lHG~~g~~~~~y~~~~~~~l~~~G~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG~SlGg 197 (262)
+=-|++.+.. .-....+.+..++||+|+.+|--|.-... .-+...+..+.+....+.|..+|--+=|
T Consensus 443 fekGYgkd~a-~vak~AI~~a~~~gfDVvLiDTAGR~~~~------------~~lm~~l~k~~~~~~pd~i~~vgealvg 509 (587)
T KOG0781|consen 443 FEKGYGKDAA-GVAKEAIQEARNQGFDVVLIDTAGRMHNN------------APLMTSLAKLIKVNKPDLILFVGEALVG 509 (587)
T ss_pred HhhhcCCChH-HHHHHHHHHHHhcCCCEEEEeccccccCC------------hhHHHHHHHHHhcCCCceEEEehhhhhC
Confidence 3346655432 33345566778899999999976653222 1122233333332233368888887777
Q ss_pred HHHHHHHh
Q 024826 198 NILIRYLG 205 (262)
Q Consensus 198 ~ia~~~a~ 205 (262)
+=++.-+.
T Consensus 510 ~dsv~q~~ 517 (587)
T KOG0781|consen 510 NDSVDQLK 517 (587)
T ss_pred cHHHHHHH
Confidence 76664443
Done!